CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	0 crisprs	RT	0	0	1	0
NZ_CP017886	Pseudomonas frederiksbergensis strain ERDD5:01 chromosome, complete genome	2 crisprs	DEDDh,RT,cas3,csa3,DinG	0	1	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017886_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017886_1

1717802-1717884

Orphan

Consensus_repeat	Method
GGGCTTTTGCATGTTGAAAATCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017886_1

>merge|NZ_CP017886|1|1717802-1717884|CRISPRCasFinder
GGGCTTTTGCATGTTGAAAATCAATGGATCGTAGCCTTCGGCAGCGCCTACGGGGGACCGGGCTTTGGCATGTTGAAAATCAA

>NZ_CP017886|1|1|1717802-1717884|CRISPRCasFinder
GGGCTTTTGCATGTTGAAAATCAA	TGGATCGTAGCCTTCGGCAGCGCCTACGGGGGACC
GGGCTTTGGCATGTTGAAAATCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017886.1\|WP_071551670.1\|1717414_1717759_+\|pilin-assembly-protein	unknown	unknown	unknown
NZ_CP017886.1\|WP_071551667.1\|1712897_1713572_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP017886.1\|WP_071551663.1\|1709951_1710650_-\|extensin-family-protein	unknown	unknown	gnl\|CDD\|369129
NZ_CP017886.1\|WP_071551671.1\|1717945_1718272_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017886.1\|WP_071551668.1\|1713665_1714313_-\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NZ_CP017886.1\|WP_174553352.1\|1719213_1720512_-\|flavohemoglobin-expression-modulating-QEGLA-motif-protein	unknown	unknown	gnl\|CDD\|369651
NZ_CP017886.1\|WP_071551662.1\|1708433_1709216_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377360
NZ_CP017886.1\|WP_071551664.1\|1710666_1711488_-\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	unknown	unknown	gnl\|CDD\|379346
NZ_CP017886.1\|WP_071551669.1\|1714602_1717233_-\|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl\|CDD\|234570
NZ_CP017886.1\|WP_071551676.1\|1724278_1725280_-\|PleD-family-two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|226229
NZ_CP017886.1\|WP_071551674.1\|1721463_1722966_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP017886.1\|WP_071551677.1\|1725322_1726333_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|237135
NZ_CP017886.1\|WP_071551678.1\|1726329_1728618_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|223716
NZ_CP017886.1\|WP_071551666.1\|1712380_1712689_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017886.1\|WP_071551672.1\|1718268_1719183_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223999
NZ_CP017886.1\|WP_129586940.1\|1723076_1724172_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP017886.1\|WP_071555720.1\|1720644_1721349_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225767
NZ_CP017886.1\|WP_071551661.1\|1707652_1708300_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379522
NZ_CP017886.1\|WP_071551665.1\|1711520_1712381_-\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|182366
NZ_CP017886.1\|WP_071551679.1\|1728614_1729298_-\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905

Protein	Function_ID	Function_description	E-value
NZ_CP017886.1\|WP_071551667.1\|1712897_1713572_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	5.8873e-74
NZ_CP017886.1\|WP_071551663.1\|1709951_1710650_-\|extensin-family-protein	gnl\|CDD\|369129	pfam06904, Extensin-like_C, Extensin-like protein C-terminus. This family represents the C-terminus (approx. 120 residues) of a number of bacterial extensin-like proteins. Extensins are cell wall glycoproteins normally associated with plants, where they strengthen the cell wall in response to mechanical stress. Note that many family members of this family are hypothetical.	1.9793e-84
NZ_CP017886.1\|WP_071551668.1\|1713665_1714313_-\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	2.20181e-135
NZ_CP017886.1\|WP_174553352.1\|1719213_1720512_-\|flavohemoglobin-expression-modulating-QEGLA-motif-protein	gnl\|CDD\|369651	pfam08014, DUF1704, Domain of unknown function (DUF1704). This family contains many hypothetical proteins.	0
NZ_CP017886.1\|WP_071551662.1\|1708433_1709216_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377360	pfam04445, SAM_MT, Putative SAM-dependent methyltransferase. This is a family of putative SAM-dependent methyltransferases.	1.20083e-122
NZ_CP017886.1\|WP_071551664.1\|1710666_1711488_-\|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein	gnl\|CDD\|379346	pfam13714, PEP_mutase, Phosphoenolpyruvate phosphomutase. This domain includes the enzyme Phosphoenolpyruvate phosphomutase (EC:5.4.2.9). This protein has been characterized as catalyzing the formation of a carbon-phosphorus bond by converting phosphoenolpyruvate (PEP) to phosphonopyruvate (P-Pyr). This enzyme has a TIM barrel fold.	3.43586e-84
NZ_CP017886.1\|WP_071551669.1\|1714602_1717233_-\|phosphoenolpyruvate-carboxylase	gnl\|CDD\|234570	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed.	0
NZ_CP017886.1\|WP_071551676.1\|1724278_1725280_-\|PleD-family-two-component-system-response-regulator	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	5.82576e-102
NZ_CP017886.1\|WP_071551674.1\|1721463_1722966_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP017886.1\|WP_071551677.1\|1725322_1726333_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|237135	PRK12555, PRK12555, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NZ_CP017886.1\|WP_071551678.1\|1726329_1728618_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	1.99083e-134
NZ_CP017886.1\|WP_071551672.1\|1718268_1719183_-\|alpha/beta-hydrolase	gnl\|CDD\|223999	COG1073, COG1073, Hydrolases of the alpha/beta superfamily [General function prediction only].	2.87547e-20
NZ_CP017886.1\|WP_129586940.1\|1723076_1724172_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP017886.1\|WP_071555720.1\|1720644_1721349_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|225767	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown].	2.97259e-43
NZ_CP017886.1\|WP_071551661.1\|1707652_1708300_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|379522	pfam14246, TetR_C_7, AefR-like transcriptional repressor, C-terminal region. This family comprises the C-terminal domain of transcriptional regulators of the TetR family. It includes the AefR transcriptional regulator from P. syringae. It is found in association with pfam00440.	4.95623e-30
NZ_CP017886.1\|WP_071551665.1\|1711520_1712381_-\|DUF72-domain-containing-protein	gnl\|CDD\|182366	PRK10302, PRK10302, hypothetical protein; Provisional.	1.78968e-73
NZ_CP017886.1\|WP_071551679.1\|1728614_1729298_-\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	4.16087e-29

>NZ_CP017886.1|WP_071551670.1|1717414_1717759_+|pilin-assembly-protein
MKIRELAQHWEETATGRLTKTGYTIHLDVEAAARLAAITEMYPKRHPEELLGELIGAALEELEASFPYIKGQHVVATDEEGDPLYEDVGPTPRFLELSRRHLHDLSAQSGKQKH
>NZ_CP017886.1|WP_071551669.1|1714602_1717233_-|phosphoenolpyruvate-carboxylase
MTDIDARLREDVHLLGELLGNTIREQYGDGFLDKIELIRKGAKADRRGSTDAELRASLNQLTEDELLPVARAFNQFLNLANIAEQYQLIHRREESQPAPFEARVLPELLARLRAEGHGSDALARQLGRLEIELVLTAHPTEVARRTLIQKYDAIAAQLAAQDHRDLTTVEREQIQQRLQRLIAEAWHTEEIRRTRPTPVDEAKWGFAVIEHSLWQAIPNYLRKADQALHAATGLRLPLEAAPIRFASWMGGDRDGNPNVTAAVTREVLLLARWMAADLYLRDVDQLAADLSMQQASTELRTQAGDSAEPYRAVLKQLRERLRATRHWAQASLTETTAASAEVLQHNRELLDPLELCYQSLHECGMGVIADGPLLDCLRRAVTFGLFLVRLDVRQDSSRHASAMTEITDYLGLGRYEDWDEEARIRFLMGELNNRRPLLPAYFKPSADTAEVLATCREIAAAPAASLGSYVISMAGAASDVLAVQLLLKEAGVLRPMRVVPLFETLADLDNAGPVIEKLLLLPGYRSRLQGPQEVMIGYSDSAKDAGTTAAAWAQYRAQERLVDICREQQVELLLFHGRGGTVGRGGGPAHAAILSQPPGSVAGRFRTTEQGEMIRFKFGLPDIAEQNLNLYLAAVLEATLLPPPPPEPAWRSLMDELAADGVSAYRAVVRENPQFVEYFRQSTPEQELGRLPLGSRPAKRRAGGIESLRAIPWIFGWTQTRLMLPAWLGWEAALSNALARGEGELLAQMREQWPFFRTRIDMLEMVLAKADADIAQSYDERLVTPDLLPLGVHLRDLLSQACSVVLGLTGQSQLLAHSPDTLEFIRLRNTYLDPLHLLQAELLARSRQPEVAQGSPVEQALLVSVAGIAAGLRNTG
>NZ_CP017886.1|WP_071551668.1|1713665_1714313_-|adenylate-kinase
MRVILLGAPGAGKGTQAQFITEKFAIPQISTGDMLRAAVKAGTELGIKAKGIMDAGGLVSDDLIIALVKDRIAQADCANGFLFDGFPRTIPQAEALVDAGVELDHVVEIAVDDEEIVQRIAGRRVHEASGRVYHTVYNPPKVAGKDDITGEALVQRKDDTEETVRHRLSVYHSQTKPLVDFYQQLSVAKGKPVYSHIAGVGSVEAITGKVLEALS
>NZ_CP017886.1|WP_071551667.1|1712897_1713572_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MSTLLALDTATEACSVALLHDGKVTSHYEVIPRLHAQKLLPMIQQLLADAGTTLQAVDAIAFGRGPGAFTGVRIAIGVVQGLAFALDRPVLPVSNLAVLAQRALREHGAHQVAAAIDARMDEVYWGCYRETAGEMRLVGAEAVLPPEVAALPADATGDWFGAGTGWGYGERIAVNLIGQDAGMLPHAEDLLTLARFAWERGEGIPADDAQPVYLRDKVATPKAR
>NZ_CP017886.1|WP_071551666.1|1712380_1712689_-|hypothetical-protein
MRIDGLSSQSYPIKRKPRKGNVSVDESLEDIDGEQEFPSEEQLAARAAKASAQRLSNLPARQQDMIYHRAMSKSVAMALASYLSTAAFVDWDMEVLGLDLHI
>NZ_CP017886.1|WP_071551665.1|1711520_1712381_-|DUF72-domain-containing-protein
MRLPYCLGCPSWSENAWREYLYPQNARPNEFLGLYSQVFNAVEGNTTFYARPAQATVERWAQTMPEHFRFTAKFPGDISHGGDLREQLSAAETFVQLLSPLGERVSPLWLQLSAAFTPQRLAELAGFIDGLQRPLAVEVRHRDFFAKGDAERRLNRLLLDRSVERICLDPRALFSCTSTEPSVLHAQAKKPKVPPRPAAFTQFPQVRFIGHPVLEANDSFLTPWVEKIAQWIEEGRTPYIFLHTADNLLAAALAQRFHTRLMARLPGLPALPELYREPAAEQLGLL
>NZ_CP017886.1|WP_071551664.1|1710666_1711488_-|isocitrate-lyase/phosphoenolpyruvate-mutase-family-protein
MDAQTLRAQAFKALHESPGAFVIPNPWDAGSAKMLASLGYQALATTSAGYAFSLGRPDGAVKLEETLANVRAIVCASDLPVAVDLENGFADSPQQSAESLLRAASVGAVGGSIEDATGREDGPIYCFEHAVARIEAAVAAARSLPFPFILTARAENYLHGNPDLVDTIRRLQAFAEAGADVLYAPGLRSAEEILAVVRAVAPKPVNVLMSGGLKLNVAQLSEMGVKRISVGSAMARAAYGAFYQAAQEIQGQGTFDFADCTLPFGQINQMFKG
>NZ_CP017886.1|WP_071551663.1|1709951_1710650_-|extensin-family-protein
MRVLKVLLGVMLVIGGLLVGVWRGWLPLPAAWNPWAPLDVRAPPNLLTRFKLMRLRDNPPLCDQVLSGAGLKFTRQADSNPDVDCPLNNTLRVQGGEVALSSSFLASCPLAVAFVLFERHALQPAAEATYGQAVARVDHLGSFACRNMYNRENGSRSQHATADALDIAGFRLADGRSISVLRDWPKDNDDARFLRKVRDGACDMFSVVLSPDYNAAHRNHFHLDVGPWWVCR
>NZ_CP017886.1|WP_071551662.1|1708433_1709216_-|class-I-SAM-dependent-methyltransferase
MSEQPAASRIKVQALAEAFQARAEQWAERLNLPLLLDDAEFALQVGEHGLQLQQLGPDAPGPVRVDFVEGGAAHRRLYGGGSGQMIAKAVGVAQGVRPKVLDATAGLGKDGFVLASLGCEMSLIERQPLIGALLEDGLARAAEDFEVAPIVARMTLLKGNSIELMRNWEGEPPQVIYLDPMFPHREKTALVKKEMRLFRPLVGDDPDAPALLEAALALASHRVVVKRPRKAPCIEGPKPSHALDGKSSRYDIYPKKALKP
>NZ_CP017886.1|WP_071551661.1|1707652_1708300_+|TetR/AcrR-family-transcriptional-regulator
MSNNLPAPNGPGRPKDLAKREAILEAAKRLFLSNGYASTSMDTVAAEAGVSKLTVYSHFNDKETLFSSAVMAKCEEQLPTLFFELPDGMPIENVLLNIARGFHLLINSAESVNLHRLIMALGSQDPKLSLIFFEAGPQRMLLGMERLLTRIDQIGALSIDKPLNAAEHFFCLLKGAANFRLLYGCGEPLTEDAAEAHIQEVVGLFIRAYRPDTTR
>NZ_CP017886.1|WP_071551671.1|1717945_1718272_-|hypothetical-protein
MSEERNAIPLIITGICSILGTVGALWFYGYLHFAKPEDALLLNDFTMLKTVPGEDYKVSLEPAAEVAQCVDGVLVLFDTEQKGLTGVLVNNKKKAVRCMGQETPQLEQ
>NZ_CP017886.1|WP_071551672.1|1718268_1719183_-|alpha/beta-hydrolase
MRILGILCLLLTLGGCSSLLFYPDPGLPFTPRKAGLEYHDVSLTTADGVKLSGWWLPAKKGVAVKGTVLHLHGNGGNLAGHLGASWWLPKQGYQVLLVDYRGYGLSQGKPSLPAIYQDIDAAFKWLDQAPDVQGKPLIVLGQSLGGALAVHYLVEHPERQRQLKALVLDGVPASYRDVGRFALSTSWMTWPFQVPLSWLVPDSDSAINSMPQLNGVPKLIYHSIDDPLVPLSNGIRLYQAAPPPRVLQLTRGGHVQTFADPVWRKVMLRYLEDPQHFNGLRRLGETSNYPAPPNSEVEPPESPQ
>NZ_CP017886.1|WP_174553352.1|1719213_1720512_-|flavohemoglobin-expression-modulating-QEGLA-motif-protein
MFQREHRVDEYQQTIRTLSDRIVLAQTPIRVLDAVKWDDNIRKGFLKAKGKEMPAVDRDYYLNRPLSFDSSKVKLEFQNIERDITRQLGQFNPVGQIMRRMCKEYRMVVRMLEARGTEDFGLISQELYGAASDAFHAGDPTLADLGLMMSDYLNNIDGRGDLKDEPKILTAKEAVHLLQTRLNKVFGEAEETIRVFESDGIVADAAAGADYIKIRADAMFNERDVRALEVHEGLVHVGTTLNGLNQPICTFLSKGPPSSTVTQEGLAILMEIITFASYPSRLRKLTNRTRAIHMVEEGADFLQVFEFFRAQGFEMAESYSNTSRVFRGSVPNGLPFTKDLSYLKGFIMVYNYIQLAVRKGKLEQIPLLFCGKTTLEDMRTLRQLVDEGLVEPPKYLPDQFRDMNALSAWMCFSNFLNHLSLDRIEADYSNIL
>NZ_CP017886.1|WP_071555720.1|1720644_1721349_-|TetR-family-transcriptional-regulator
MAQEGAAGIATAVAESVQYQGRKASRQGSEQRRQEILDAAMRIVVRDGVRAVRHRAIAAEAGVPLSATTYYFKDIDDLLTDTFAQYVERSAAYMARLWANNEGLLRELVISGDGSPQSRSQLADDIARLMADYVQRQLINRREHLMAEQAFRQEALLNPRLALLVRSHQQILLQGTCQLFQVLGSREPQQDAKVLTAIVGRMEYQGLLNDAEPQAEQEMLGILTRYMHLVLASV
>NZ_CP017886.1|WP_071551674.1|1721463_1722966_-|lysine--tRNA-ligase
MSDLELDPQALQQEENSLIALRKEKLAAERTKGQAFPNDFRRDAYCEDLQKQYADKTKEELADAAIPVKVAGRLMLNRGSFMVIQDMSGRIQVYVNRKTLSEETLAAVKTWDLGDIIAAEGTLARSGKGDLYVEMTDVRLLTKSLRPLPDKHHGLSDTEQRYRQRYVDLIVNEDVRQTFRVRSQVIAHIRSFLMKRDFLEVETPMLQTIPGGAAAKPFETHHNALDMGMFLRIAPELYLKRLVVGGFEKVFEINRNFRNEGVSTRHNPEFTMLEFYQAYADYEDNMDLTEELFRELAQLVLGSTDVPYGDKVFHFGEPFVRLSVFDSILKYNPELTADDLTDIDKARAIAKKAGAKVLGFEGLGKLQVMIFEELVEHKLEQPHFITQYPFEVSPLARRNDENPNVTDRFELFIGGREIANAYSELNDAEDQAERFMAQVADKDAGDDEAMHYDADFVRALEYGMPPTAGEGIGIDRLVMLLTNSPSIRDVILFPHMRPQA
>NZ_CP017886.1|WP_129586940.1|1723076_1724172_-|peptide-chain-release-factor-2
MEINPILNSIKDLSERSETIRGYLDYDQKHERLTEVNRELEDPNVWNNPSYAQELGRERSLLAQIVETLDQMHSGLADAKDLLLMSAEEEDQAAVDDVAAEVERLREALEKLEFRRMFSGEMDANNAYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFDATIMELSAGEVAGIKGATLHIKGEYAFGWLRTEIGVHRLVRKSPYDSGNRRHTSFSAVFVSPEIDDNIEIDINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHVPSNTVVSCQNERSQHANKDTAMKMLRARLYEQEVQKRNAASQALEDTKSDIGWGHQIRSYVLDQSRIKDLRTNVERSDCDKVLDGDIDEYLVASLKQGL
>NZ_CP017886.1|WP_071551676.1|1724278_1725280_-|PleD-family-two-component-system-response-regulator
MDDLQLDAFKTDENAAMVLLVDDQAMIGEAVRRGLANEDNIDFHFCADPHQAIAHAIRIKPTVILQDLVMPGLDGLSLVREYRNHPATKDIPIIVLSTKEDPLIKSAAFAAGANDYLVKLPDNIELVARIRYHSRSYMTLIQRDAAYRALRVSQQQLLDTNLVLQRLMNSDGLTGLSNRRHFDEYLELEWRRALREQTQLSLLMIDVDYFKLYNDSFGHLEGDEALRKVATAIRNASSRPSDLPARYGGEEFVLVLPNTSPGGARLVAEKLRQTVAGMKIPHVCPAEGASLTISIGLSTMTPQSGTDCRQLISAADKGLYLAKNNGRNQVGIE
>NZ_CP017886.1|WP_071551677.1|1725322_1726333_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MKIAIVNDMPMAVEALRRALTFEPAHELVWVARNGAEAVQRCAELTPDLILMDLIMPVMDGVEATRRIMAETPCAIVIVTVDRQQNVHRVFEAMGHGALDVVDTPTLGAGGPKEAAAPLLRKIMNIGWLIGERGNRVQSAPTHPRISGQRQSLVAIGSSAGGPAALEILLKSLPRDFAPAIVLVQHVDQVFAAGMAEWLGSASGLDVRLAQEGEPPQSGTVLLAGTNHHIRLLKNGTLAYTAEPVNEIYRPSIDVFFESVATYWNGDAVGVLLTGMGRDGAQGLKLMRQRGYLTIAQDQRSSAVYGMPKAAADINAAVEVRPLDKIAPRLLEIFAR
>NZ_CP017886.1|WP_071551678.1|1726329_1728618_-|hybrid-sensor-histidine-kinase/response-regulator
MTPDQMRDASLLELFSLEAEAQTQVLSAGLLALERDPTQADHLEACMRAAHSLKGAARIVGVDAGVSVSHVMEDCLVSAQEGRLFLRPEHIDALLQGTDLLMRIATPDSANVGPGDIETYVALMGRLLDPSSVVAPAVVQPSLPPEPPAPRVEPPDLVSELESSLAASVEASRKAKRVTEGGERVLRVTAERLNSLLDLSSKSLVETLRLKPYLATMQRLKRTQSNSLRALEALNVHLKEQDLSLEAQEALGDARRLLAESQQLLAEKTAELDEFAWQASQRAQVLYDTALACRMRPFADVLTGQARMVRDLGRSLGKQVRLEIEGEKTQVDRDVLEKLEAPLTHLLRNAVDHGIEMPEQRLLAGKPAEGLIRLRASHQAGLLVLELSDDGNGVDLERVRRSIVERQLSPVETAAQLSEAELLTFLFLPGFSLRDKVTEVSGRGVGLDAVQHMVRQLRGAVVLDQKAGEGSRFHLEVPLTLSVVRSLVVEVGEEAYAFPLAHIERMCDLASDDIVQVEGRQHFWHEGRHVGLVAASQLLNRPPSQNSPETLKVVVIRERDAVYGVAVERFIGERTLVVLPLDERLGKVQDISAGALLDDGSVVLIVDVEDLLRSVDKLLNTGRLERIARHSQQAIVARKRILVVDDSLTVRELQRKLLLNRGYDVAVAVDGMDGWNALRAEDFDLLITDIDMPRMDGIELVSLLRRDNRLQSLPVMVVSYKDREEDRRRGLDAGADYYLAKASFHDDALLDAVAELIGGARA
>NZ_CP017886.1|WP_071551679.1|1728614_1729298_-|purine-binding-chemotaxis-protein-CheW
MTGSVVLNVTHEDAQAIDDCWNRIGIHGNKSCPLLVEHIHCRNCAVYSAAATRLLDRYALQQDDRAQASIGVESDVVTRSLLMFRLGEEWFALATRSLVEVAPLQAIHSLPHQRSRALLGVANVRGALVACLSLVELLGLDAVTGVASAARIMPRMLIIAAHGGPVVVPVDEVDGIHAIDERILNAASRSGQQASAKYTRGVLQFRGRSLCWLDEEQLLSAVTRSLT

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Crispr_ID: NZ_CP017886_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017886_2

3907987-3908112

Orphan

Consensus_repeat	Method
CCGGGTAGTGGCCAATTCCTCCCTGCTTGAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017886_2

>merge|NZ_CP017886|2|3907987-3908112|CRISPRCasFinder
CCGGGTAGTGGCCAATTCCTCCCTGCTTGAATCAGTGGCAGAAGGGCTTTGTAATACCGATTAGCCAGCGCTTGAACCGTTAGTCGCATCACCCGGGTAGTGGCCAATTCCCTCCCTGCTTGAATC

>NZ_CP017886|2|2|3907987-3908112|CRISPRCasFinder
CCGGGTAGTGGCCAATTCCTCCCTGCTTGAATCA	GTGGCAGAAGGGCTTTGTAATACCGATTAGCCAGCGCTTGAACCGTTAGTCGCATCAC
CCGGGTAGTGGCCAATTCCCTCCCTGCTTGAATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017886.1\|WP_007904374.1\|3903480_3904074_-\|phosphoheptose-isomerase	unknown	unknown	gnl\|CDD\|237567
NZ_CP017886.1\|WP_071553408.1\|3901013_3901427_+\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|236987
NZ_CP017886.1\|WP_174553366.1\|3917085_3918297_+\|putative-lipid-II-flippase-FtsW	unknown	unknown	gnl\|CDD\|274232
NZ_CP017886.1\|WP_071553423.1\|3919349_3920810_+\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NZ_CP017886.1\|WP_071553418.1\|3913281_3914649_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	unknown	unknown	gnl\|CDD\|273468
NZ_CP017886.1\|WP_071553420.1\|3915736_3917083_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|235160
NZ_CP017886.1\|WP_071553417.1\|3911825_3913289_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	unknown	unknown	gnl\|CDD\|234660
NZ_CP017886.1\|WP_071553415.1\|3909793_3910087_+\|cell-division-protein-FtsL	unknown	unknown	gnl\|CDD\|368229
NZ_CP017886.1\|WP_071553407.1\|3899446_3900229_+\|cytochrome-c1	unknown	unknown	gnl\|CDD\|225413
NZ_CP017886.1\|WP_071553406.1\|3898235_3899447_+\|cytochrome-bc-complex-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|224209
NZ_CP017886.1\|WP_071553422.1\|3918286_3919357_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|234825
NZ_CP017886.1\|WP_071553411.1\|3904537_3906349_-\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|225649
NZ_CP017886.1\|WP_019693569.1\|3904175_3904538_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NZ_CP017886.1\|WP_071555794.1\|3906557_3907430_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP017886.1\|WP_071553410.1\|3902905_3903484_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP017886.1\|WP_071553412.1\|3908398_3908854_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	unknown	unknown	gnl\|CDD\|234728
NZ_CP017886.1\|WP_071553419.1\|3914648_3915731_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP017886.1\|WP_174553365.1\|3910086_3911826_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|223839
NZ_CP017886.1\|WP_019693572.1\|3900379_3900997_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236537
NZ_CP017886.1\|WP_019693575.1\|3897642_3898236_+\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|273610

Protein	Function_ID	Function_description	E-value
NZ_CP017886.1\|WP_007904374.1\|3903480_3904074_-\|phosphoheptose-isomerase	gnl\|CDD\|237567	PRK13936, PRK13936, phosphoheptose isomerase; Provisional.	3.92332e-142
NZ_CP017886.1\|WP_071553408.1\|3901013_3901427_+\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|236987	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional.	7.10492e-82
NZ_CP017886.1\|WP_174553366.1\|3917085_3918297_+\|putative-lipid-II-flippase-FtsW	gnl\|CDD\|274232	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW. This family consists of FtsW, an integral membrane protein with ten transmembrane segments. In general, it is one of two paralogs involved in peptidoglycan biosynthesis, the other being RodA, and is essential for cell division. All members of the seed alignment for this model are encoded in operons for the biosynthesis of UDP-N-acetylmuramoyl-pentapeptide, a precursor of murein (peptidoglycan). The FtsW designation is not used in endospore-forming bacterial (e.g. Bacillus subtilis), where the member of this family is designated SpoVE and three or more RodA/FtsW/SpoVE family paralogs are present. SpoVE acts in spore cortex formation and is dispensible for growth. Biological rolls for FtsW in cell division include recruitment of penicillin-binding protein 3 to the division site. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.24356e-145
NZ_CP017886.1\|WP_071553423.1\|3919349_3920810_+\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NZ_CP017886.1\|WP_071553418.1\|3913281_3914649_+\|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase	gnl\|CDD\|273468	TIGR01143, murF, UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase. This family consists of the strictly bacterial MurF gene of peptidoglycan biosynthesis. This enzyme is almost always UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a few species, MurE adds lysine rather than diaminopimelate. This enzyme acts on the product from MurE activity, and so is also subfamily rather than equivalog. Staphylococcus aureus is an example of species in this MurF protein would differ. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.642e-176
NZ_CP017886.1\|WP_071553420.1\|3915736_3917083_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|235160	PRK03803, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional.	0
NZ_CP017886.1\|WP_071553417.1\|3911825_3913289_+\|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase	gnl\|CDD\|234660	PRK00139, murE, UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional.	0
NZ_CP017886.1\|WP_071553415.1\|3909793_3910087_+\|cell-division-protein-FtsL	gnl\|CDD\|368229	pfam04999, FtsL, Cell division protein FtsL. In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein pfam04977, however this interaction may be indirect.	1.09738e-37
NZ_CP017886.1\|WP_071553407.1\|3899446_3900229_+\|cytochrome-c1	gnl\|CDD\|225413	COG2857, CYT1, Cytochrome c1 [Energy production and conversion].	2.03738e-77
NZ_CP017886.1\|WP_071553406.1\|3898235_3899447_+\|cytochrome-bc-complex-cytochrome-b-subunit	gnl\|CDD\|224209	COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy production and conversion].	1.47699e-128
NZ_CP017886.1\|WP_071553422.1\|3918286_3919357_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|234825	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional.	4.778e-166
NZ_CP017886.1\|WP_071553411.1\|3904537_3906349_-\|penicillin-binding-protein-activator	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	6.01378e-169
NZ_CP017886.1\|WP_019693569.1\|3904175_3904538_-\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	4.31835e-57
NZ_CP017886.1\|WP_071555794.1\|3906557_3907430_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	7.68398e-130
NZ_CP017886.1\|WP_071553410.1\|3902905_3903484_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	8.77544e-49
NZ_CP017886.1\|WP_071553412.1\|3908398_3908854_+\|division/cell-wall-cluster-transcriptional-repressor-MraZ	gnl\|CDD\|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	8.45885e-66
NZ_CP017886.1\|WP_071553419.1\|3914648_3915731_+\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	0
NZ_CP017886.1\|WP_174553365.1\|3910086_3911826_+\|penicillin-binding-protein-2	gnl\|CDD\|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	3.33618e-171
NZ_CP017886.1\|WP_019693572.1\|3900379_3900997_+\|glutathione-S-transferase-N-terminal-domain-containing-protein	gnl\|CDD\|236537	PRK09481, sspA, stringent starvation protein A; Provisional.	2.45264e-95
NZ_CP017886.1\|WP_019693575.1\|3897642_3898236_+\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	gnl\|CDD\|273610	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit. This model represents the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulfur as found in ubiquinol-cytochrome c reductase. The model excludes the Rieske iron-sulfur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. [Energy metabolism, Electron transport].	5.50794e-82

>NZ_CP017886.1|WP_071555794.1|3906557_3907430_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MTAPGALNSVAGSLYVVATPIGNLDDISARALKILREVALIAAEDTRHSLRLLQHFGIATPLAACHEHNERDEGSRFITRLLAGDSVALISDAGTPLISDPGYHLVRQARAAGINVVPVPGACALIAALSAAGLPSDRFIFEGFLPAKAVGRRARLESIKEEPRTLIFYEAPHRILECLQDMELVFGAERPALLARELTKTFETLKGLPLAELRAFVENDSNQQRGECVVLVAGWSAPESEEAVSSEAMRILNLLLEEMPLKRAAALAAQITGERKNVLYQVALDKQKGE
>NZ_CP017886.1|WP_071553411.1|3904537_3906349_-|penicillin-binding-protein-activator
MIACLRLFSALCLAALLVACASSPSSSLGELPRTADASIEQLLEQAATSTTPEKAALLRLSAADLAYRQGNAGQSAQILQQVPMDQLKPGQQVFASTLAAELAMTRNQPKAALTALSHPSLQRLSELPVEQQVRTGTVHARALEADGQTLAAARERIFIAPLLSGDVASKNHEAIWALIASLPTDQLQPITTDDLGGWMSLAVAVKNAGTLEQQQAAIDNWRAQHPKHPAAIVLPLPLTQLKQMASQPLSKIGLLLPQDGPLASVAKALREGFMAAHYQAQQAGQKPPAIEFYDSSHLTSLDDFYRKAQADGVQLVIGPLEKPLVKQLSARPQLPITTLALNYSEGEQGPAQLFQFGLAAEDEAREVARRARADGLHRAAALVPKGEWGDRVLKAFRQDWEANGGTVIGIERVDQPVALAQQIADLFQLRQSEGRAKSLQSTVGSQVAAQPSRRQDIEFIFLAATPQQAQQIKPTLNFQYAGDVPVYATSHVYSASGDQNQYNDMNGIRFCETPWLLDANDPLRRQVTAQWPQAAGSLGRLYAMGVDAYRLAPRLGQLKALPDSSIDGQSGTLSMTSSQRIQRQLPWAQFINGQVQRLPDTPR
>NZ_CP017886.1|WP_019693569.1|3904175_3904538_-|YraN-family-protein
MPDRSRQQSGRDAESQALKHLQQQGLRLLAQNWLCKRGELDLVMLDGDTVVFVEVRYRQNTQWGGALGSIDARKRQKLILAAQYFLQRESRWANSPCRFDVVAIDGSAAHLNWLRNAFDS
>NZ_CP017886.1|WP_007904374.1|3903480_3904074_-|phosphoheptose-isomerase
MDMQSRIRQLFQASIDTKQQAMDVLAPHIEQASQVMVNALLNEGKMLSCGNGGSAGDAQHFSSELLNRFERERPSLPAIALTTDSSTITSIANDYSYNEIFSKQIRALGQPGDVLLAISTSGNSANIIQAIQAAHDREMIVVALTGRDGGGMASLLLPEDVEIRVPANVTARIQEVHLLAIHCLCDLIDSQLFGSEE
>NZ_CP017886.1|WP_071553410.1|3902905_3903484_-|BON-domain-containing-protein
MTLNRLGLLALTLSLGISGCTSVITASREAPIEDDRGTRTFGSKIDDSLIETKVGVNVAKANPDLDKSSHIIVTSFNGVVLLAGQTPRPDLKELAGQAAAAVQRVKTVHNELQVMQPSSILARNNDAWLTTKIKTQMLADASIPGSRIKVVTENGIVYLLGLLTKQEADQATNLVQGVSGVQKIVKLFEYID
>NZ_CP017886.1|WP_071553408.1|3901013_3901427_+|ClpXP-protease-specificity-enhancing-factor
MNSSRPYLVRALYEWIVDNDCTPHMLVNSEYPSVQVPQGFASDGQIVLNVSPAAVRHLHMDNDAVSFEGRFGGVPHTLYVPIAAILGIYARENGQGMVFDLESPMEDEEEIESDDDLPPPDSEPPRPSGRPSLKVVK
>NZ_CP017886.1|WP_019693572.1|3900379_3900997_+|glutathione-S-transferase-N-terminal-domain-containing-protein
MGVTNRLACYSDPADHYSHRVRIVLAEKGVSAEIISVEAGRQPPKLIEVNPYGSLPTLVDRDLALWESTVVMEYLDERYPHPPLLPVYPVARANSRLLIHRIQRDWCVLVDLILDSRTKEPARVQARKELRESLTGVSPLFADKPFFLSEEQSLVDCCLLPILWRLPILGIELPRPAKPLLDYMERQFAREAFQASLSGVERDMR
>NZ_CP017886.1|WP_071553407.1|3899446_3900229_+|cytochrome-c1
MKKLFAVLILAALPVLSFAAEHGGPELEKVDIDVSDKAAMQDGARTFANYCMGCHSAKFQRYERVADDLGIPHDLMLKNLVFTGAKIGDHMSTGMQPADAKAWFGAAPPDLTLVARVRGTDWLYGYLRSFYEDPSRPWGVNNKVFPNVGMPNVLVGLQGRQVVGCKQVQIVENGKKQYDPLTGTPLTHEACDQLTIVPKTGALNEEQFDEKVKNLVTFLAYSANPVKLQHQRIGTYVLLYLAFFFVFAYLLKREYWKDVH
>NZ_CP017886.1|WP_071553406.1|3898235_3899447_+|cytochrome-bc-complex-cytochrome-b-subunit
MSKFMDWVDARFPATKMWEDHLSKYYAPKNFNFFYFFGSLALLVLVNQIVTGVWLTMSYTPSAEEAFASVEYIMRDVEYGSILRLLHSTGASAFFIVVYLHMFRGLLYGSYQKPRELVWVFGMLIYLALMAEAFMGYLLPWGQMSYWGAQVIISLFGAIPVIGNDLTQWIRGDYLISGITLNRFFALHVVALPIVILGLVVLHVLALHEVGSNNPDGVDIKKHKDENGVPLDGIAFHPYYTVKDIVGVVVFLFIFCAIVFFFPEMGGYFLEKPNFEVANAFKTPEHIAPVWYFTPFYAILRAIPDKLMGVVAMGASIAMLFVLPWLDRSPVKSMRYKGWLSKIWLWVFCISFVILGWLGVMAPTPERTLLSQVCTFLYFAYFILMPFYTRLEKTKPVPERVTG
>NZ_CP017886.1|WP_019693575.1|3897642_3898236_+|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit
MSNDGVNAGRRRFLVAATSVVGAAGAVGAAVPFVGSWFPSAKAKAAGAPVKVNVSKIEPGQQMIAEWRGQPVFIVRRTQEILGNLAKIEGDLSDPDSKNSVQPTYVDPKTRSIKPEVLLLIGICTHLGCSPTFRPEVAPADLGPKWVGGYFCPCHGSHYDLAGRVFKSQPAPLNLPVPPHSYESNDIIVIGVDTEKA
>NZ_CP017886.1|WP_071553412.1|3908398_3908854_+|division/cell-wall-cluster-transcriptional-repressor-MraZ
MFRGANAISLDAKGRLAMPSRYRDELVSRSSGQLIVTIDAVDPCLCVYPLDEWELIETKLRALPSLREENRRLQRLLIGNAVDLELDSSGRFLVPPRLREYAKLDKRAMLVGQLNKFQLWDEDAWDAVSAADLAAIQQPGAMPDELRDLIL
>NZ_CP017886.1|WP_071553415.1|3909793_3910087_+|cell-division-protein-FtsL
MSKLFAKPLPGGSFFMLLLFIAVLISAIGVSYSAHWNRQLLNSLYNELSVRDKAQAEWGRLILEQSTWTAHSRIEVLATEQLKMRIPGAAEVRMVAP
>NZ_CP017886.1|WP_174553365.1|3910086_3911826_+|penicillin-binding-protein-2
MKLEGALFPWRFRVVLGLLGVMVAAIAWRIIDLQVIDRDFLIGQGDARSVRHIPIPAHRGLITDRNGEPLAVSTPVTTLWANPKEMQLAKEKWPALAAALGQDPKALAERLEAQANKEFIYLVRGLTPEQGQVVIDLKVPGVYGIEEFRRFYPAGEVTAHMVGFTDIDDHGREGVELAYDEWLAGVAGKRQVIKDRRGRLIKDVQVTKNAKAGKPLALSIDLRLQYLANRELRNAIIENGAKAGSLVIMDVKTGEILAMVNQPTYNPNNRRNLQPAMMRNRAMIDVFEPGSTMKAISMSAAIETGRWKPSDTVEVYPGSLQIGKYTIKDVSKTEGPVLDLTGILINSSNVGMSKVAFDIGGETIFRLAQKVGLGQDTGLGFPGERVGNLPNYREWRKAETATLSYGYGISVTAIQLVHAFSALANNGRIAPLTLIKTDKAAQTTQVIPEAVAKTMQGMLQQVIEAPRGVFRAQVPAYHVAGKSGTARKTSVGTKGYAENSYRSLFAGFGPMSDPRYAIVVVIDEPTKAGYFGGLVSAPVFSKVMSGTLRLMNVTPDNLPTTQQANATPVIPVKANGGRG
>NZ_CP017886.1|WP_071553417.1|3911825_3913289_+|UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,-6-diaminopimelate-ligase
MSLSLNKIFAHAGRDLLIRELTLDSRNVRAGDLFLAVPGAKLDGRTHIADALQRGAAAVAYEVEGATVLPITDVPLIPVKGLAAQLSDVAGRFYGDPSRNLNLIGVTGTNGKTSVTQLVAQALDLLGQHCGIVGTLGTGFYGALESGLHTTPNPIAVQATLADLKKAGAKAVAMEVSSHGLDQGRVTALAFDVAVMTNLSRDHLDYHGTMQAYGEAKAKLFAWNDLKCRVVNLDDEFGRQLAAQERESRLITYSLEDTSAYLYCREAQFDDEGVRATLVTPQGEHHLRSTLLGRFNLSNVLAAVGALLGLDYALDEILCVLPKLEGPAGRMQRLGGGTQPLVVVDYAHTPDALEKVLMALRPHAKGQLLCLFGCGGDRDRGKRPLMAEVVERLADGVLVTDDNPRSEDPAQIFDDIRAGFTAVDNVRFVAGRGQAIAQLIASASADDVIVLAGKGHEDYQEINGERHDFSDLVEADRALTAWEVAHA
>NZ_CP017886.1|WP_071553418.1|3913281_3914649_+|UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D--alanine-ligase
MLKALTLSEVTGPLAGRLLAADSRFDGVSIDSRAIKPGQLFVALTGPRFDGHDYLNDVAAKGAVAALVEREVANATLPQLLVKDTRQALGELGALNRAAYSNPVAAITGSSGKTTVKEMLASILRTRGPVLATRGNLNNDLGVPLTLLELAAEHTAAVIELGASRIGEIAYTVGMTKPHVAVINNAGSAHVGEFGGPEKIVEAKGEILEGLDADGVAVLNLDDKAFDIWKKRAAGRQVLSFALNDSRADFHATDLARDARGCPSFKLHSPQGVEPVQLNLLGNHNVANALAAAAAAHALGVSLFGIATGLNAVQPVKGRTVAQLATNGMRVIDDTYNANPASMCAAIDILAGFSGRTVLVLGDIGELGEWAEQGHRDVGAYASGKVSALYAVGPMMAHAVAAFGEQARHFANQADLIAALGAEHDTNTTILIKGSRSAAMENVVAALCGSSGEKH
>NZ_CP017886.1|WP_071553419.1|3914648_3915731_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MLLLLAEYLQQFYKGFAVFQYLTLRGILGVLTALSLSLCLGPWMIRTLQNRQIGQSVRNDGPQSHLSKSGTPTMGGALILTAIGVSTLLWADLHNRYVWVVLLVTLLFGAVGWVDDYRKVIEKNSRGLPSRWKYFWQSVFGLGAAIFLYMTATSPVETTLILPMLKDYSIPLGAGFIVLTYFVIVGSSNAVNLTDGLDGLAIMPTVMVGGALGIFCYLSGNVKFAEYLLIPYVPGAGELIVFCGALIGAGLGFLWFNTYPAQVFMGDVGALALGAALGTIAVIVRQEIVLFIMGGVFVMETLSVVIQVASFKLTGRRVFRMAPIHHHFELKGWPEPRVIVRFWIITVILVLVGLATLKLR
>NZ_CP017886.1|WP_071553420.1|3915736_3917083_+|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MSLIASDHFRIVVGLGKSGMSLVRFLANRGVSFAVADTRENPPELATLRRDYPQVEVRCGELDVEFLCRADELYVSPGLALATPALQAAAARGVKLSGDIELFARNAKAPIVAISGSNAKSTVTTLVGEMAAAAGKRVAVGGNLGTPALDLLSDDVELYVMELSSFQLETTDHLGAEVATVLNVSEDHMDRYSGLPAYHLAKHRIFRGAKQVVVNRQDALSRPLMSEGLPCWTFGLSKPDFKAFGLREENGEKYLAFEFQNLMPVRELKIRGAHNQSNALAALALGHAVGLPFDAMLSSLRTFAGLEHRCQWVRDLNGVSYYNDSKATNVGAALAAIEGLGADIEGKLVLIAGGDGKGAEFKDLRDPVAANCRAVVLMGRDSELIGQAIGDAVPLIRVNSLIEAVEQCRAIAQPGDAVLLSPACASFDMFKNYEERGHLFAQAVEDLA
>NZ_CP017886.1|WP_174553366.1|3917085_3918297_+|putative-lipid-II-flippase-FtsW
MTNIIKPYPSPLITGRGIDLDFPMLAGCLALLGLGLVMIASASTEVAAVQSGSALYYMIRHLIYVVLGLGACIVTMMIPIATWQRLGWLMLIGAFGLLVMVIVPGIGREVNGSMRWIGFSFFNVQPSEIAKVFVVIYLAGYLVRRQKEVRESWMGFFKPFIVLLPMAGLLLMEPDFGATVVMMAAAAAMLFLGGVGLFRFSLMVVLAVAAVVLLIQVQPYRMARLTNFADPWADQFGAGYQLSQALIAFGRGEWLGVGLGNSVQKQFYLPEAHTDFVFSVLAEELGAVGSLCTVALFVFVCIRGMYIGLWAEKAKQFFAAYVAYGLSFLWIGQFLINIGVNVGLLPTKGLTLPFLSYGGSSLVICCACLGLLLRIEWESRTHLGSEEMEFSESDFAEEPTHGR
>NZ_CP017886.1|WP_071553422.1|3918286_3919357_+|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MGANVLIMAGGTGGHVFPALACAREFQARGYTVHWLGTPRGIENELVPNAGLPLHLINVSGLRGKSKLSLLKAPFVLLKAIWQARAVIRQLKPVCVLGFGGYVTGPGGVAAKLAGVPVIVHEQNAVAGTANRLLVPLAARVCEAFPDTFAASGSRRTTGNPVRTELFLETSRPALAGRKARLLILGGSLGAEPLNKLLPEALSLVPAELRPEVFHQAGKNHDEVTAERYRTVGVEAQVQPFIKDMAQAYGWADLVVCRAGALTVSELAAAGLPSMLVPLPHAIDDHQTRNAEYLAREGAAFLMPQRTTGAADLAARLTEVLMQPQRLNDMAGAARRLAKPDATRNVVDICLEVVHG
>NZ_CP017886.1|WP_071553423.1|3919349_3920810_+|UDP-N-acetylmuramate--L-alanine-ligase
MVENQKAMPQPEMRRIRRIHFVGIGGVGMCGIAEVLLNLGYQVSGSDLKASPVTERLESFGAQIFIGHRAENSASADVLVVSSAVNTSNPEVATALERRIPVVPRAEMLAELMRYRHGIAVAGTHGKTTTTSLIASVFAAGGLDPTFVIGGRLNAAGTNAQLGTSRYLIAEADESDASFLHLQPLVAVVTNIDADHMATYDGDFNKLKKTFVEFLHNLPFYGLAVMCLDDPVVREILPLVKRPTVTYGFSEDADVRAINVRQQGMQTFFTVLRPDREPLDVSVNMPGNHNVLNSLATICIATDEGVSDEAIVQGLSGFQGVGRRFQVYGELPVEGGNVMLVDDYGHHPTEVAAVIKAVRGGWPDRRLVMVYQPHRYSRTRDLYDDFVNVLADANVLLLMEVYPAGEEPIPGADSRKLCNSIRQRGQLDPIYIERGVDLAPVVKPLLRAGDILLCQGAGDIGGLAPKLLKSPLFAGAVVAPSEGKLK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017886_1	1.1\|1717826\|35\|NZ_CP017886\|CRISPRCasFinder	1717826-1717860	35	CP000664	Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03, complete sequence	91797-91831	10	0.714
NZ_CP017886_1	1.1\|1717826\|35\|NZ_CP017886\|CRISPRCasFinder	1717826-1717860	35	NZ_CP031753	Rhodobacter sphaeroides strain EBL0706 plasmid p.B, complete sequence	105260-105294	10	0.714

1. spacer 1.1|1717826|35|NZ_CP017886|CRISPRCasFinder matches to CP000664 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03, complete sequence) position: , mismatch: 10, identity: 0.714

tggatcgtagccttcggcagcgcctacgggggacc	CRISPR spacer
tcgatcctcgccttcggcagcgcctacatgctggt	Protospacer
* **** * ******************. *  . .

2. spacer 1.1|1717826|35|NZ_CP017886|CRISPRCasFinder matches to NZ_CP031753 (Rhodobacter sphaeroides strain EBL0706 plasmid p.B, complete sequence) position: , mismatch: 10, identity: 0.714

tggatcgtagccttcggcagcgcctacgggggacc	CRISPR spacer
tcgatcctggccttcggcagcgcctacatgctggt	Protospacer
* **** *.******************. *  . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

382507 : 453089

Pseudomonas_phage(38.33%)

plate,terminase,transposase,lysis,capsid,bacteriocin,integrase,tail

attL 415974:415989|attR 455094:455109

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_129586922.1\|382507_383669_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.3e-86	54.3
WP_129586923.1\|383841_384057_-	hypothetical protein	NA	NA	NA	NA
WP_071550505.1\|384218_384449_-	hypothetical protein	NA	NA	NA	NA
WP_071550506.1\|384574_384775_+	hypothetical protein	NA	NA	NA	NA
WP_071550507.1\|384788_385031_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_071550508.1\|385274_386027_+	carbonic anhydrase	NA	NA	NA	NA
WP_161492336.1\|386090_386267_-	hypothetical protein	NA	NA	NA	NA
WP_071550509.1\|386594_387023_-	hypothetical protein	NA	NA	NA	NA
WP_071550510.1\|387541_387778_-	hypothetical protein	NA	NA	NA	NA
WP_071555672.1\|387934_388177_-	hypothetical protein	NA	NA	NA	NA
WP_071550511.1\|388825_389050_+	hypothetical protein	NA	NA	NA	NA
WP_071550512.1\|389141_389633_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
WP_071550514.1\|391589_391931_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071550515.1\|392030_392357_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_071550516.1\|393251_393677_-\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	2.4e-25	49.3
WP_071550517.1\|393689_395360_-	hypothetical protein	A0A291LA16	Bordetella_phage	7.6e-19	43.8
WP_071550518.1\|395359_395941_-\|tail	phage tail protein	Q6QI98	Burkholderia_phage	1.2e-51	58.8
WP_071550519.1\|395933_397055_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	1.1e-90	49.3
WP_071550520.1\|397038_397416_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.5e-31	59.3
WP_071550521.1\|397505_398123_+	hypothetical protein	NA	NA	NA	NA
WP_071550522.1\|398452_398986_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_071550523.1\|399004_400117_-	late control protein D	A4JWL3	Burkholderia_virus	8.8e-64	39.2
WP_129586924.1\|400104_400311_-\|tail	tail protein X	Q6QIA3	Burkholderia_phage	2.4e-15	56.5
WP_071550525.1\|400310_401189_-\|tail	phage tail protein	A0A059WRP1	Vibrio_phage	2.4e-08	34.1
WP_071550526.1\|401188_403897_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.8e-103	34.6
WP_071550527.1\|404058_404388_-\|tail	phage tail assembly protein	Q6QIA8	Burkholderia_phage	1.4e-09	40.7
WP_071550528.1\|404564_404801_-	hypothetical protein	NA	NA	NA	NA
WP_071550529.1\|404831_405356_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	4.4e-50	54.7
WP_071550530.1\|405356_406781_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	4.4e-185	66.8
WP_081427275.1\|406770_407046_-	hypothetical protein	NA	NA	NA	NA
WP_071550531.1\|407042_407531_-	hypothetical protein	NA	NA	NA	NA
WP_071550532.1\|407527_407962_-	DUF1320 domain-containing protein	Q6QIB3	Burkholderia_phage	2.4e-41	57.3
WP_161492337.1\|407969_408302_-	DUF2190 family protein	Q6QIB4	Burkholderia_phage	2.4e-25	57.3
WP_071550533.1\|408298_408643_-	hypothetical protein	NA	NA	NA	NA
WP_071550534.1\|408651_409575_-	hypothetical protein	A4JWK0	Burkholderia_virus	1.2e-79	49.3
WP_071550535.1\|409587_410694_-	peptidase	A4JWJ9	Burkholderia_virus	1.9e-90	46.9
WP_071550536.1\|410927_411404_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	2.4e-18	38.2
WP_071550537.1\|411417_412248_-\|capsid	minor capsid protein	A0A0A1IX74	Pseudomonas_phage	9.4e-87	59.1
WP_071550538.1\|412249_413746_-	DUF935 family protein	Q6QIC0	Burkholderia_phage	5.5e-162	58.0
WP_071550539.1\|413742_415347_-	hypothetical protein	A0A219VH72	Ochrobactrum_phage	2.6e-117	46.6
WP_071550540.1\|415343_415895_-	DUF3486 family protein	J9SH37	Pseudomonas_phage	6.6e-28	46.0
WP_071550541.1\|415897_416194_-	hypothetical protein	J9SNG3	Pseudomonas_phage	3.1e-24	62.0
415974:415989	attL	NA	NA	NA	NA
WP_060765883.1\|416190_416496_-	hypothetical protein	J9STR5	Pseudomonas_phage	2.3e-14	41.7
WP_071550542.1\|416492_416714_-	TraR/DksA C4-type zinc finger protein	Q9ZXI6	Pseudomonas_virus	6.3e-06	41.4
WP_071550543.1\|416720_417335_-\|lysis	lysis protein	J9SVX5	Pseudomonas_phage	2.3e-42	52.6
WP_071550544.1\|417530_417752_-	hypothetical protein	NA	NA	NA	NA
WP_071550545.1\|417748_418243_-	structural protein	J9Q7Y7	Salmonella_phage	3.0e-40	53.4
WP_071550546.1\|418348_418531_-	hypothetical protein	Q6QID0	Burkholderia_phage	1.1e-16	72.7
WP_071550547.1\|418544_418961_-	hypothetical protein	NA	NA	NA	NA
WP_071550548.1\|419073_419673_-	hypothetical protein	NA	NA	NA	NA
WP_071550549.1\|419675_420041_-	hypothetical protein	NA	NA	NA	NA
WP_071550550.1\|420184_420439_+	DNA-binding protein	NA	NA	NA	NA
WP_071550551.1\|420451_420754_+	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	3.7e-25	65.2
WP_071550552.1\|420767_421655_+	DUF3102 domain-containing protein	Q5ZR03	Pseudomonas_phage	3.0e-91	60.8
WP_071550553.1\|421657_423430_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0S4L2U5	Pseudomonas_phage	1.2e-192	60.4
WP_071550554.1\|423429_424611_+	AAA family ATPase	A4JWN1	Burkholderia_virus	5.2e-131	62.1
WP_071550555.1\|424612_424930_+	hypothetical protein	J9RWC3	Pseudomonas_phage	1.6e-15	45.7
WP_071550556.1\|424926_425406_+	hypothetical protein	NA	NA	NA	NA
WP_071550557.1\|425398_426016_+	DUF3164 family protein	Q6QIE4	Burkholderia_phage	1.6e-43	42.9
WP_071550558.1\|426017_426707_+	DUF2786 domain-containing protein	Q5ZR11	Pseudomonas_phage	8.1e-84	68.1
WP_071550559.1\|426708_426927_+	hypothetical protein	NA	NA	NA	NA
WP_071550560.1\|426961_427402_+	regulatory protein GemA	Q6QIE7	Burkholderia_phage	2.0e-27	53.0
WP_071550561.1\|427398_427752_+	DNA-binding protein	NA	NA	NA	NA
WP_071550562.1\|428675_429140_-	hypothetical protein	NA	NA	NA	NA
WP_071550563.1\|429172_430258_-\|capsid	minor capsid protein	A0A1B0VMF3	Pseudomonas_phage	5.9e-182	91.7
WP_071550564.1\|430232_431648_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	2.7e-243	86.2
WP_071550565.1\|431644_433132_-\|terminase	terminase	A0A2H4J2I1	uncultured_Caudovirales_phage	5.0e-256	83.7
WP_071550566.1\|433133_433658_-	hypothetical protein	A0A2H4J2I6	uncultured_Caudovirales_phage	5.8e-58	68.4
WP_071550567.1\|433744_434185_+	hypothetical protein	NA	NA	NA	NA
WP_071550568.1\|434456_434717_-	hypothetical protein	A0A1B0VME7	Pseudomonas_phage	1.9e-25	67.5
WP_071550569.1\|434719_435031_-	peptidase M48, Ste24p	A0A125RNL3	Pseudomonas_phage	8.8e-14	53.2
WP_071550570.1\|435171_436047_-\|bacteriocin	putidacin L1 family lectin-like bacteriocin	NA	NA	NA	NA
WP_071550571.1\|436056_436245_-	Com family DNA-binding transcriptional regulator	B5TK59	Pseudomonas_phage	8.5e-12	86.8
WP_071550572.1\|436437_437133_-	hypothetical protein	A0A1B0YZZ3	Pseudomonas_phage	5.0e-65	59.1
WP_071550573.1\|437129_437711_-	recombination protein NinG	A0A125RNK9	Pseudomonas_phage	7.3e-70	67.0
WP_071550574.1\|437707_438295_-	DUF1367 family protein	Q9MC49	Pseudomonas_phage	3.3e-94	83.1
WP_071555675.1\|438305_438806_-	hypothetical protein	NA	NA	NA	NA
WP_071550575.1\|438811_439606_-	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	1.3e-56	51.7
WP_071550576.1\|439592_440576_-	phage replication protein	A0A1B0VME0	Pseudomonas_phage	1.3e-111	67.6
WP_081427276.1\|440577_441438_-	Rha family transcriptional regulator	A0A2H4J5H6	uncultured_Caudovirales_phage	7.5e-63	50.9
WP_071550577.1\|441599_441800_-	hypothetical protein	A0A2K8HL98	Pseudomonas_phage	3.8e-10	52.3
WP_071550578.1\|441907_442630_+	peptidase S24	F1C599	Cronobacter_phage	3.0e-49	49.2
WP_071550579.1\|442734_443235_+	hypothetical protein	NA	NA	NA	NA
WP_071550580.1\|443330_443588_+	hypothetical protein	NA	NA	NA	NA
WP_071550581.1\|443621_443849_+	hypothetical protein	NA	NA	NA	NA
WP_071550582.1\|443938_444142_+	hypothetical protein	NA	NA	NA	NA
WP_071550583.1\|444485_444701_+	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	6.7e-21	78.8
WP_071550584.1\|444869_445121_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_071555677.1\|445676_446060_+	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	5.0e-27	64.9
WP_071550585.1\|446129_446525_+	hypothetical protein	A0A0U4IIY3	Pseudomonas_phage	1.0e-35	57.8
WP_071550587.1\|446997_447246_+	hypothetical protein	A0A2H4J404	uncultured_Caudovirales_phage	3.0e-20	61.0
WP_071550588.1\|447249_447699_+	hypothetical protein	A0A2H4J7X7	uncultured_Caudovirales_phage	3.1e-60	75.8
WP_167368523.1\|447695_447872_+	hypothetical protein	A0A0S2SY66	Pseudomonas_phage	2.9e-06	49.1
WP_071550589.1\|448037_448928_+	recombinase RecT	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	4.1e-80	63.3
WP_071550590.1\|448924_450556_+	YqaJ viral recombinase family protein	A0A2H4J6P1	uncultured_Caudovirales_phage	2.4e-179	64.3
WP_071550591.1\|450637_451141_+	hypothetical protein	NA	NA	NA	NA
WP_129586925.1\|451128_451491_-	hypothetical protein	NA	NA	NA	NA
WP_071550593.1\|451487_451946_-	hypothetical protein	NA	NA	NA	NA
WP_071550594.1\|452081_453089_+	nucleoid-associated protein YejK	L7TI92	Pseudomonas_virus	3.8e-122	64.5
455094:455109	attR	NA	NA	NA	NA

DBSCAN-SWA_2

458840 : 510046

Pseudomonas_phage(23.08%)

lysis,integrase,transposase,holin

attL 459954:460012|attR 501989:502047

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071550604.1\|458840_459872_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	1.5e-97	55.7
459954:460012	attL	NA	NA	NA	NA
WP_071550605.1\|460253_460472_+	hypothetical protein	NA	NA	NA	NA
WP_129586993.1\|460887_462981_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_071550607.1\|464120_464999_+	hypothetical protein	NA	NA	NA	NA
WP_071550608.1\|465198_465876_+	HNH endonuclease	M1U3A7	Cyanophage	1.1e-08	41.1
WP_071550609.1\|466125_467295_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	38.8
WP_071550610.1\|467641_468217_+	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_129586926.1\|468237_469463_-\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	7.0e-155	93.5
WP_129586927.1\|469626_470115_+	hypothetical protein	NA	NA	NA	NA
WP_071550612.1\|470136_470907_+	hypothetical protein	NA	NA	NA	NA
WP_071550614.1\|471277_472003_-	hypothetical protein	NA	NA	NA	NA
WP_071550615.1\|472932_473451_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_071550616.1\|473584_475627_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	4.4e-37	27.6
WP_071550617.1\|475616_476357_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_167368524.1\|476353_481225_+	RHS domain-containing protein	A0A2H4JFP5	uncultured_Caudovirales_phage	1.5e-35	48.6
WP_071550618.1\|481236_481626_+	immunity 22 family protein	NA	NA	NA	NA
WP_071550619.1\|482122_482482_+	hypothetical protein	NA	NA	NA	NA
WP_071550620.1\|482679_482934_+	hypothetical protein	NA	NA	NA	NA
WP_071550621.1\|482936_483158_+	hypothetical protein	NA	NA	NA	NA
WP_071550622.1\|483442_483655_+	hypothetical protein	A0A2H4J177	uncultured_Caudovirales_phage	3.5e-22	81.8
WP_071550623.1\|483779_484181_+	GFA family protein	NA	NA	NA	NA
WP_071550624.1\|484483_484831_+	hypothetical protein	NA	NA	NA	NA
WP_071550625.1\|485024_488222_-	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_161492339.1\|488221_489427_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_071550627.1\|489615_491592_-	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	1.1e-32	25.3
WP_071550628.1\|492623_492824_+	KTSC domain-containing protein	NA	NA	NA	NA
WP_071550629.1\|492962_493295_-\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	2.5e-43	81.9
WP_071550630.1\|493824_494184_-	hypothetical protein	NA	NA	NA	NA
WP_071550631.1\|494176_496396_-	toprim domain-containing protein	A0A2D1GN57	Marinobacter_phage	1.5e-192	47.5
WP_071555678.1\|496385_496610_-	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_071550632.1\|496602_497121_-	hypothetical protein	NA	NA	NA	NA
WP_045123078.1\|497441_497666_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071550633.1\|497766_498516_+	helix-turn-helix transcriptional regulator	A0A1W6JNY2	Morganella_phage	7.3e-30	36.2
WP_071550634.1\|498593_498773_+	hypothetical protein	NA	NA	NA	NA
WP_071550635.1\|498769_499360_+	hypothetical protein	NA	NA	NA	NA
WP_071550636.1\|499370_499652_+	phage antirepressor KilAC domain-containing protein	NA	NA	NA	NA
WP_167368525.1\|499677_499818_+	hypothetical protein	NA	NA	NA	NA
WP_071550637.1\|499810_500191_+	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_071550638.1\|500187_500661_+	hypothetical protein	NA	NA	NA	NA
WP_071550639.1\|500657_500864_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_071550640.1\|500864_501896_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	5.6e-97	55.2
WP_071550641.1\|502753_505213_-	hypothetical protein	NA	NA	NA	NA
501989:502047	attR	NA	NA	NA	NA
WP_071550642.1\|505272_506451_-	hypothetical protein	NA	NA	NA	NA
WP_071550643.1\|506503_507145_-	hypothetical protein	NA	NA	NA	NA
WP_071550644.1\|507141_507873_-	hypothetical protein	NA	NA	NA	NA
WP_071550646.1\|509041_509443_+	hypothetical protein	NA	NA	NA	NA
WP_071550647.1\|509503_510046_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	7.6e-53	69.2

DBSCAN-SWA_3

537934 : 544190

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071555684.1\|537934_538327_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.8e-57	82.3
WP_071550674.1\|538330_538693_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	2.4e-39	65.0
WP_071550675.1\|538692_538992_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	8.7e-35	70.7
WP_071550676.1\|538988_539324_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	4.2e-46	80.2
WP_174553346.1\|539338_540322_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.7e-164	85.8
WP_071550678.1\|540410_541412_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_071550679.1\|541514_542909_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_071550680.1\|542909_544190_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.0e-96	53.0

DBSCAN-SWA_4

762555 : 856645

uncultured_Caudovirales_phage(51.35%)

portal,plate,terminase,transposase,holin,protease,tRNA,lysis,capsid,integrase,tail,head

attL 811887:811921|attR 855686:855720

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071550848.1\|762555_763380_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
WP_071550849.1\|763578_766203_-	FimV family protein	NA	NA	NA	NA
WP_071550850.1\|766384_767395_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_071550851.1\|767605_768718_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_071550852.1\|768785_769868_-	3-isopropylmalate dehydrogenase	NA	NA	NA	NA
WP_071550853.1\|769927_770695_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_071550854.1\|770813_771458_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_071550855.1\|771469_772888_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_071550856.1\|773037_773928_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_071550857.1\|773996_777287_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	2.2e-14	31.4
WP_071550858.1\|777334_777781_-	Hsp20 family protein	A0A1D8KN82	Synechococcus_phage	5.9e-19	40.7
WP_071550859.1\|777911_778871_-\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_071550860.1\|778933_779371_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_071550861.1\|779418_780252_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_071550862.1\|780281_780821_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_071550863.1\|781799_783281_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_071550864.1\|783512_784559_+	HlyD family secretion protein	NA	NA	NA	NA
WP_174553347.1\|784608_786099_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_071550866.1\|786223_788239_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_071550867.1\|788588_789785_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_071550868.1\|789955_790159_+	hypothetical protein	NA	NA	NA	NA
WP_019692692.1\|790165_790399_-	hypothetical protein	NA	NA	NA	NA
WP_014860758.1\|793683_794016_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_071550869.1\|794060_795167_+	alkene reductase	NA	NA	NA	NA
WP_071550870.1\|795215_795434_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA
WP_071550871.1\|796316_796646_-	thioredoxin family protein	C4NTC0	Sulfitobacter_phage	1.2e-05	32.9
WP_071550872.1\|796709_797408_-	DsbA family oxidoreductase	NA	NA	NA	NA
WP_071550873.1\|797431_798004_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_071550874.1\|798109_798883_-	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	3.5e-11	27.6
WP_071550875.1\|798981_799536_-	OsmC family protein	NA	NA	NA	NA
WP_071550876.1\|799933_800509_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_071550144.1\|800954_801932_-\|transposase	IS5 family transposase	A0A077K814	Ralstonia_phage	2.8e-98	58.9
WP_071550877.1\|802207_803728_-	purine permease	NA	NA	NA	NA
WP_071550878.1\|803946_804774_-	arylamine N-acetyltransferase	NA	NA	NA	NA
WP_071550879.1\|804788_805688_-	class A beta-lactamase	A0A1B0VBP7	Salmonella_phage	2.7e-79	55.8
WP_071550880.1\|805749_807324_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	6.1e-18	36.0
WP_161492341.1\|807530_807674_+	demethoxyubiquinone hydroxylase family protein	NA	NA	NA	NA
WP_129586929.1\|807680_807977_+	hypothetical protein	NA	NA	NA	NA
WP_071550882.1\|807973_808627_+	HAD family phosphatase	NA	NA	NA	NA
WP_071550883.1\|808623_808992_+	hypothetical protein	NA	NA	NA	NA
WP_071550884.1\|809062_809725_-	ribonuclease T2	NA	NA	NA	NA
WP_071550885.1\|809870_810359_+	hypothetical protein	NA	NA	NA	NA
WP_071550887.1\|811266_811659_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
811887:811921	attL	NA	NA	NA	NA
WP_071550888.1\|812332_816238_-	CHAT domain-containing protein	NA	NA	NA	NA
WP_071550889.1\|816634_817180_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_071550890.1\|817190_817973_+	hypothetical protein	NA	NA	NA	NA
WP_129586930.1\|817957_818341_+	hypothetical protein	NA	NA	NA	NA
WP_174553324.1\|818532_819327_-	hypothetical protein	NA	NA	NA	NA
WP_071550891.1\|819606_819837_+	hypothetical protein	NA	NA	NA	NA
WP_071550892.1\|820004_820331_+	hypothetical protein	NA	NA	NA	NA
WP_071550893.1\|820429_821224_-	DNA adenine methylase	C7BGE1	Burkholderia_phage	3.8e-101	66.5
WP_071550894.1\|821374_821917_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	1.4e-51	67.8
WP_071550895.1\|821898_822462_-	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	1.3e-76	75.4
WP_071550896.1\|822514_823564_-	late control protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.5e-153	80.5
WP_071550897.1\|824690_827348_-\|tail	phage tail tape measure protein	A0A2H4JG00	uncultured_Caudovirales_phage	1.8e-83	37.8
WP_071550898.1\|827496_827808_-\|tail	phage tail assembly protein	A0A2H4J873	uncultured_Caudovirales_phage	1.8e-22	58.1
WP_071550899.1\|827820_828324_-\|tail	phage major tail tube protein	A0A2H4JBU0	uncultured_Caudovirales_phage	3.3e-66	71.3
WP_071550900.1\|828336_829503_-\|tail	phage tail sheath family protein	A0A2H4J869	uncultured_Caudovirales_phage	1.1e-170	78.7
WP_071550901.1\|829605_830037_-\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	4.6e-29	53.4
WP_071550902.1\|830152_831706_-\|tail	phage tail protein	A0A077K818	Ralstonia_phage	7.7e-66	39.8
WP_071550903.1\|831702_832308_-\|tail	phage tail protein I	A0A2H4JDH5	uncultured_Caudovirales_phage	8.7e-82	72.9
WP_071550904.1\|832309_833194_-\|plate	baseplate J/gp47 family protein	A0A2H4JFK9	uncultured_Caudovirales_phage	1.7e-110	71.4
WP_071550905.1\|833190_833517_-	GPW/gp25 family protein	A0A2H4JA09	uncultured_Caudovirales_phage	8.1e-34	64.2
WP_071550906.1\|833522_833762_-	hypothetical protein	NA	NA	NA	NA
WP_071550907.1\|833818_834400_-\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	1.2e-56	72.9
WP_129586996.1\|834396_834933_-	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	9.1e-59	61.8
WP_071550909.1\|834937_835594_-	hypothetical protein	A0A2H4JBV1	uncultured_Caudovirales_phage	2.9e-83	71.4
WP_071550910.1\|835590_835911_-	hypothetical protein	A0A2H4J879	uncultured_Caudovirales_phage	1.1e-38	69.5
WP_071550911.1\|835913_836909_-\|capsid	major capsid protein	A0A2H4J890	uncultured_Caudovirales_phage	2.9e-167	88.2
WP_071550912.1\|836972_837317_-\|head	head decoration protein	A0A2H4JF15	uncultured_Caudovirales_phage	1.3e-42	76.3
WP_071550913.1\|837313_838468_-\|protease	Clp protease ClpP	A0A2H4JDI2	uncultured_Caudovirales_phage	2.6e-151	74.8
WP_071550914.1\|838464_839946_-\|portal	phage portal protein	A0A2H4JFL5	uncultured_Caudovirales_phage	3.4e-244	85.0
WP_071550915.1\|839945_840152_-	hypothetical protein	A0A2H4JA19	uncultured_Caudovirales_phage	2.4e-23	77.9
WP_071550916.1\|840153_842172_-\|terminase	phage terminase large subunit family protein	A0A2H4J898	uncultured_Caudovirales_phage	0.0e+00	83.8
WP_071550917.1\|842176_842779_-\|terminase	terminase small subunit	A0A2H4JG15	uncultured_Caudovirales_phage	1.8e-63	68.4
WP_071550918.1\|842945_843290_-\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	4.4e-46	86.1
WP_071550919.1\|844167_846387_-	conjugal transfer protein TraC	A0A2D1GN57	Marinobacter_phage	2.9e-191	47.4
WP_071550920.1\|846379_846604_-	TraR/DksA family transcriptional regulator	A2I309	Vibrio_virus	2.6e-07	44.6
WP_071550921.1\|846596_847115_-	hypothetical protein	NA	NA	NA	NA
WP_071550922.1\|847442_847667_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071550923.1\|847767_848493_+	helix-turn-helix transcriptional regulator	A0A0P0ZE37	Stx2-converting_phage	6.8e-33	52.7
WP_071550924.1\|848750_849341_+	hypothetical protein	NA	NA	NA	NA
WP_071550925.1\|849351_849633_+	phage antirepressor KilAC domain-containing protein	NA	NA	NA	NA
WP_071550926.1\|849791_850109_+	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_071550927.1\|850164_850644_+	hypothetical protein	NA	NA	NA	NA
WP_071550928.1\|851272_851542_+	pyocin activator PrtN family protein	A0A2K8HN48	Pseudomonas_phage	1.5e-22	63.6
WP_071550929.1\|851614_853546_-	AAA family ATPase	NA	NA	NA	NA
WP_071550930.1\|853612_854338_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_071550931.1\|854428_855523_-\|integrase	site-specific integrase	L7TP61	Pseudomonas_virus	1.4e-154	72.5
WP_071550932.1\|855625_856645_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
855686:855720	attR	NA	NA	NA	NA

DBSCAN-SWA_5

997832 : 1052245

Pseudomonas_virus(48.65%)

portal,plate,terminase,holin,protease,capsid,bacteriocin,integrase,tail,head

attL 990689:990721|attR 1061294:1061326

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
990689:990721	attL	NA	NA	NA	NA
WP_071551030.1\|997832_998369_+\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_071551031.1\|998374_999907_+	inactive transglutaminase family protein	NA	NA	NA	NA
WP_071551032.1\|999906_1000893_+	alpha-L-glutamate ligase-like protein	NA	NA	NA	NA
WP_071551033.1\|1001017_1002361_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	3.0e-50	35.6
WP_071551034.1\|1002476_1003094_-	bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH	NA	NA	NA	NA
WP_071551035.1\|1003268_1004003_+	phosphoadenylyl-sulfate reductase	NA	NA	NA	NA
WP_071551036.1\|1004080_1005004_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_071551037.1\|1005129_1005876_+	3-oxoacyl-ACP reductase FabG	NA	NA	NA	NA
WP_071551038.1\|1005959_1006652_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_071551039.1\|1006907_1007162_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A1S5NR91	Burkholderia_phage	3.2e-22	60.7
WP_019689429.1\|1007142_1007469_+	helix-turn-helix transcriptional regulator	A0A1S5NNJ5	Burkholderia_phage	1.9e-30	65.4
WP_071551040.1\|1007588_1007933_-\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_071551041.1\|1008301_1008493_-	hypothetical protein	NA	NA	NA	NA
WP_071551042.1\|1008751_1008946_+	hypothetical protein	NA	NA	NA	NA
WP_071551043.1\|1008978_1009968_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_071551044.1\|1010062_1010968_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_071551045.1\|1011422_1012001_+	DUF4337 domain-containing protein	NA	NA	NA	NA
WP_071551046.1\|1012088_1012424_-	hypothetical protein	NA	NA	NA	NA
WP_071551047.1\|1012643_1013006_+	osmotically-inducible lipoprotein OsmE	NA	NA	NA	NA
WP_071551048.1\|1013161_1013497_+	cytochrome c	NA	NA	NA	NA
WP_071551049.1\|1013550_1013805_-	DUF1652 domain-containing protein	NA	NA	NA	NA
WP_081427283.1\|1013881_1014178_+	Hsp20 family protein	NA	NA	NA	NA
WP_071551051.1\|1014280_1014739_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_071551052.1\|1015996_1016305_-	BrnA antitoxin family protein	K4NZP3	Burkholderia_phage	2.1e-07	58.3
WP_071551053.1\|1016282_1016558_-	BrnT family toxin	NA	NA	NA	NA
WP_071551054.1\|1017590_1018643_-\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	8.7e-162	82.6
WP_071551055.1\|1018642_1020400_-\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	2.1e-285	81.1
WP_071551056.1\|1020551_1021430_+\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	1.3e-81	59.7
WP_071551057.1\|1021475_1022483_+\|capsid	phage major capsid protein, P2 family	A4PE30	Ralstonia_virus	1.3e-122	64.6
WP_071551058.1\|1022494_1023202_+\|terminase	terminase endonuclease subunit	A0A2H4J948	uncultured_Caudovirales_phage	2.0e-74	64.8
WP_071551059.1\|1023304_1023766_+\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	2.7e-51	66.9
WP_071551060.1\|1023765_1023978_+\|tail	tail protein X	Q9ZXL9	Pseudomonas_virus	3.8e-24	79.1
WP_174553325.1\|1024023_1024347_+\|holin	phage holin, lambda family	A0A2H4JFM8	uncultured_Caudovirales_phage	1.6e-26	57.7
WP_071551061.1\|1024343_1025186_+	N-acetylmuramidase family protein	Q9ZXL6	Pseudomonas_virus	2.6e-100	69.7
WP_071551062.1\|1025182_1025389_+	hypothetical protein	NA	NA	NA	NA
WP_071551063.1\|1025385_1025868_+	hypothetical protein	NA	NA	NA	NA
WP_071551064.1\|1025864_1026308_+	peptidase	Q9ZXL5	Pseudomonas_virus	7.6e-27	52.1
WP_071551066.1\|1026618_1027095_+\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	6.7e-45	67.7
WP_071551067.1\|1027091_1027553_+	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	1.4e-47	63.8
WP_071551068.1\|1027621_1028494_+	hypothetical protein	NA	NA	NA	NA
WP_071551069.1\|1028586_1029159_+\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	3.6e-61	63.0
WP_071551070.1\|1029155_1029500_+	GPW/gp25 family protein	Q9ZXK9	Pseudomonas_virus	1.6e-35	64.6
WP_071551071.1\|1029496_1030408_+\|plate	baseplate assembly protein	Q9ZXK8	Pseudomonas_virus	5.1e-118	73.4
WP_071551072.1\|1030407_1031028_+\|tail	phage tail protein I	A0A2H4JAU2	uncultured_Caudovirales_phage	9.5e-76	68.7
WP_071551073.1\|1033357_1033783_+\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	6.2e-26	48.2
WP_071551074.1\|1033913_1035083_+\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	4.6e-172	76.9
WP_071551075.1\|1035140_1035656_+\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	3.8e-70	72.5
WP_071551076.1\|1035695_1036025_+\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	3.7e-26	60.6
WP_041752072.1\|1036033_1036153_+\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	1.7e-10	79.5
WP_071551078.1\|1038920_1039361_+\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	5.4e-57	74.0
WP_071551079.1\|1039357_1040629_+	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	2.7e-194	80.2
WP_161492342.1\|1040659_1040824_-	hypothetical protein	NA	NA	NA	NA
WP_071551080.1\|1040949_1041729_-	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_071551081.1\|1041795_1042116_-	helix-turn-helix transcriptional regulator	K4NXA8	Burkholderia_phage	1.7e-12	41.6
WP_071551082.1\|1042200_1042413_+	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	1.7e-08	51.5
WP_071551083.1\|1042442_1042916_+	hypothetical protein	A0A2H4JG61	uncultured_Caudovirales_phage	1.3e-43	56.5
WP_071551084.1\|1042912_1043203_+	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	1.3e-14	45.7
WP_071551085.1\|1043199_1043571_+	hypothetical protein	NA	NA	NA	NA
WP_071551086.1\|1043646_1043880_+	hypothetical protein	NA	NA	NA	NA
WP_071551087.1\|1043892_1046616_+	toprim domain-containing protein	A0A2H4J936	uncultured_Caudovirales_phage	4.1e-272	51.8
WP_071551088.1\|1046641_1047460_+	hypothetical protein	A0A077K8T2	Ralstonia_phage	6.3e-27	34.7
WP_071551089.1\|1047483_1048215_+	hypothetical protein	A0A0S3UFR8	Pseudomonas_phage	1.3e-23	33.6
WP_071551090.1\|1048228_1048435_+	hypothetical protein	NA	NA	NA	NA
WP_071551091.1\|1048492_1048756_+	hypothetical protein	NA	NA	NA	NA
WP_071551092.1\|1048758_1049349_+	hypothetical protein	NA	NA	NA	NA
WP_071551093.1\|1049345_1049852_+	SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	1.5e-58	62.6
WP_071551095.1\|1050111_1050459_+	hypothetical protein	A0A1B0VMC7	Pseudomonas_phage	3.5e-19	50.4
WP_071551096.1\|1050448_1050745_+	hypothetical protein	NA	NA	NA	NA
WP_071551097.1\|1050747_1050957_+	hypothetical protein	NA	NA	NA	NA
WP_071551098.1\|1051051_1052245_+\|integrase	site-specific integrase	A0A2H4JGM5	uncultured_Caudovirales_phage	1.9e-136	59.4
1061294:1061326	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1579306 : 1691587

112

Pseudomonas_phage(46.51%)

plate,holin,protease,tRNA,lysis,bacteriocin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071551549.1\|1579306_1579564_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_071551550.1\|1579560_1580985_-	S-type pyocin domain-containing protein	NA	NA	NA	NA
WP_071551551.1\|1581495_1581870_+	hypothetical protein	B5TK57	Pseudomonas_phage	2.4e-21	52.1
WP_071551552.1\|1582000_1582759_-	collagen-like triple helix repeat-containing protein	NA	NA	NA	NA
WP_071551553.1\|1582751_1583030_-	DUF1145 domain-containing protein	NA	NA	NA	NA
WP_071551554.1\|1583282_1583780_+	hypothetical protein	NA	NA	NA	NA
WP_071551555.1\|1583784_1584261_+	YchJ family protein	NA	NA	NA	NA
WP_071551556.1\|1584349_1584835_+	LEA type 2 family protein	NA	NA	NA	NA
WP_046046248.1\|1584840_1585059_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_071551557.1\|1585105_1585654_-	cysteine hydrolase	NA	NA	NA	NA
WP_071551558.1\|1585863_1588314_+	penicillin acylase family protein	NA	NA	NA	NA
WP_071551559.1\|1588554_1589334_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_071551560.1\|1589392_1590121_+	ABC transporter permease	NA	NA	NA	NA
WP_071551561.1\|1590117_1590828_+	ABC transporter permease	NA	NA	NA	NA
WP_071551562.1\|1590840_1591959_+	succinylglutamate desuccinylase/aspartoacylase family protein	NA	NA	NA	NA
WP_071551563.1\|1591972_1592737_+	ATP-binding cassette domain-containing protein	G3M9Y6	Bacillus_virus	8.0e-16	28.9
WP_071551564.1\|1592760_1592979_-	hypothetical protein	NA	NA	NA	NA
WP_071551565.1\|1593086_1593653_-	dCTP deaminase	S5VM63	Pseudomonas_phage	3.3e-75	74.2
WP_002554837.1\|1594006_1594216_+	cold-shock protein	Q9AZD3	Lactococcus_phage	2.2e-16	66.7
WP_071551566.1\|1594279_1595287_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_071551567.1\|1595451_1595805_+	MGMT family protein	NA	NA	NA	NA
WP_071551568.1\|1595848_1597411_+	AmpG family muropeptide MFS transporter	NA	NA	NA	NA
WP_071551569.1\|1597540_1599256_+\|tRNA	proline--tRNA ligase	A0A2K9L0T2	Tupanvirus	2.4e-07	25.9
WP_071551570.1\|1599273_1600227_+	hypothetical protein	NA	NA	NA	NA
WP_071551571.1\|1600306_1601368_-	DNA polymerase IV	NA	NA	NA	NA
WP_071551572.1\|1602320_1604963_+	bifunctional lysylphosphatidylglycerol flippase/synthetase MprF	NA	NA	NA	NA
WP_071551573.1\|1604962_1606258_+	virulence factor family protein	NA	NA	NA	NA
WP_071551574.1\|1606333_1606627_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_071551575.1\|1606780_1608682_-	potassium transporter Kup	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	5.2e-72	33.5
WP_071551576.1\|1609004_1610339_+	30S ribosomal protein S12 methylthiotransferase RimO	NA	NA	NA	NA
WP_071551577.1\|1610454_1610928_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_071551578.1\|1611010_1611721_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_071551579.1\|1611788_1612256_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.8e-37	50.7
WP_071551580.1\|1612258_1612963_+\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_003189055.1\|1613106_1613886_-	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_167368534.1\|1614034_1614961_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_071551582.1\|1614986_1615349_-	diacylglycerol kinase	NA	NA	NA	NA
WP_071551583.1\|1615424_1616075_-	response regulator transcription factor	NA	NA	NA	NA
WP_071551584.1\|1616299_1617058_-	DTW domain-containing protein	NA	NA	NA	NA
WP_071551585.1\|1617247_1617673_+	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA
WP_071551586.1\|1617673_1617868_-	hypothetical protein	NA	NA	NA	NA
WP_071551587.1\|1618373_1619489_+	TIGR00730 family Rossman fold protein	NA	NA	NA	NA
WP_071551588.1\|1619531_1619999_-	recombination regulator RecX	NA	NA	NA	NA
WP_054595966.1\|1620007_1621060_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.2e-110	60.3
WP_071551589.1\|1621143_1621644_-	CinA family protein	B5TK85	Pseudomonas_phage	5.0e-75	86.7
WP_071551590.1\|1621726_1622263_-\|lysis	lysis protein	B5TK84	Pseudomonas_phage	3.7e-60	70.8
WP_071551591.1\|1622244_1622808_-	glycoside hydrolase family 19 protein	B5TK83	Pseudomonas_phage	1.8e-89	86.0
WP_129586939.1\|1622826_1623975_-\|tail	tail fiber protein	B5TK79	Pseudomonas_phage	1.8e-27	34.5
WP_071551593.1\|1623986_1624586_-	DUF2313 domain-containing protein	B5TK76	Pseudomonas_phage	1.4e-100	87.9
WP_071551594.1\|1624573_1625614_-\|plate	baseplate J/gp47 family protein	B5TK75	Pseudomonas_phage	4.7e-168	87.3
WP_071551595.1\|1625603_1626002_-	phage GP46 family protein	B5TK74	Pseudomonas_phage	1.0e-62	88.6
WP_071551596.1\|1626001_1626511_-\|plate	phage baseplate assembly protein	B5TK73	Pseudomonas_phage	1.2e-79	89.9
WP_071551597.1\|1626657_1627698_-\|plate	baseplate protein	B5TK72	Pseudomonas_phage	1.3e-165	85.0
WP_071551598.1\|1627701_1628940_-	DNA circularization N-terminal domain-containing protein	B5TK71	Pseudomonas_phage	1.1e-179	77.2
WP_071551599.1\|1628926_1630444_-\|tail	phage tail protein	B5TK70	Pseudomonas_phage	5.9e-95	73.7
WP_071551600.1\|1630574_1630871_-\|tail	phage tail assembly protein	B5TK69	Pseudomonas_phage	6.8e-40	90.6
WP_071551601.1\|1630867_1631215_-\|tail	phage tail tube protein	B5TK68	Pseudomonas_phage	5.2e-55	88.7
WP_071551602.1\|1631281_1632778_-\|tail	phage tail sheath subtilisin-like domain-containing protein	B5TK67	Pseudomonas_phage	1.0e-253	89.2
WP_071551603.1\|1632777_1632960_-	DUF2635 domain-containing protein	B5TK66	Pseudomonas_phage	8.5e-25	91.7
WP_071551604.1\|1632956_1633541_-	hypothetical protein	B5TK65	Pseudomonas_phage	2.8e-69	68.2
WP_071551605.1\|1633703_1634051_-\|holin	pyocin R2, holin	B5TK61	Pseudomonas_phage	8.0e-48	83.5
WP_071555718.1\|1634557_1635292_-	helix-turn-helix transcriptional regulator	B5TK58	Pseudomonas_phage	1.5e-128	93.4
WP_071551606.1\|1635548_1636235_+	WbqC family protein	NA	NA	NA	NA
WP_071551607.1\|1636231_1637155_+	glycosyltransferase family 2 protein	B9UDL7	Salmonella_phage	1.9e-27	30.2
WP_071551608.1\|1637233_1637644_+	GtrA family protein	NA	NA	NA	NA
WP_071551609.1\|1637640_1638393_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_071551610.1\|1638406_1639546_+	dTDP-4-amino-4,6-dideoxygalactose transaminase	A0A0F7LAY0	uncultured_marine_virus	1.6e-20	35.6
WP_071551611.1\|1639601_1641248_-	hypothetical protein	NA	NA	NA	NA
WP_071551612.1\|1641386_1641965_-	hypothetical protein	NA	NA	NA	NA
WP_161492344.1\|1642382_1642553_+	hypothetical protein	NA	NA	NA	NA
WP_167368557.1\|1643680_1646248_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	1.4e-27	22.6
WP_071551614.1\|1646387_1646711_+	ferredoxin family protein	NA	NA	NA	NA
WP_071551615.1\|1647294_1648299_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.6e-34	35.8
WP_071551616.1\|1648404_1649262_-	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	6.5e-06	33.3
WP_174553351.1\|1649473_1650109_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.2e-41	52.9
WP_071551618.1\|1650150_1650900_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.8e-68	53.4
WP_071551619.1\|1650887_1651946_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_071551620.1\|1651942_1652416_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_071551621.1\|1652458_1653304_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_071551622.1\|1653312_1654425_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	2.8e-33	29.1
WP_071551623.1\|1654531_1655428_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_071551624.1\|1655909_1656617_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_019692104.1\|1656613_1656892_-	cell division protein FtsB	NA	NA	NA	NA
WP_071551625.1\|1657061_1658351_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	2.2e-138	59.7
WP_071551626.1\|1658507_1659353_-	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	4.7e-49	42.8
WP_071551627.1\|1659358_1660990_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	8.2e-159	53.5
WP_071551628.1\|1661264_1662602_-\|tRNA	tRNA lysidine(34) synthetase TilS	A7IXR9	Paramecium_bursaria_Chlorella_virus	4.5e-06	24.7
WP_071551629.1\|1662731_1663679_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_071551630.1\|1663831_1667353_-	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	7.8e-199	36.2
WP_071551631.1\|1667492_1668119_-	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	2.0e-28	40.2
WP_167368558.1\|1668130_1669267_-	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_071551633.1\|1669266_1670043_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_071551634.1\|1670039_1670480_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_071551635.1\|1670588_1671644_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_071551636.1\|1671647_1672151_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_071551637.1\|1672196_1674575_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_071551638.1\|1674649_1676002_-\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_071551639.1\|1676056_1677247_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_071551640.1\|1677243_1678050_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_071551641.1\|1678049_1678805_-	di-trans,poly-cis-decaprenylcistransferase	R9W0U9	Flavobacterium_phage	8.5e-18	38.1
WP_071551642.1\|1678818_1679376_-	ribosome recycling factor	NA	NA	NA	NA
WP_019692086.1\|1679372_1680116_-	UMP kinase	NA	NA	NA	NA
WP_071551643.1\|1680326_1681190_-	elongation factor Ts	NA	NA	NA	NA
WP_003219330.1\|1681395_1682133_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_071551644.1\|1682504_1683287_+	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_071551645.1\|1683330_1686033_+	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_071551646.1\|1686076_1687276_+	succinyldiaminopimelate transaminase	NA	NA	NA	NA
WP_071551647.1\|1687567_1687930_+	ArsC family reductase	NA	NA	NA	NA
WP_071551648.1\|1687963_1688998_+	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_071551649.1\|1689073_1690279_+	cysteine desulfurase	Q2XUY6	environmental_halophage	3.4e-69	36.6
WP_071551650.1\|1690275_1690683_+	SufE family protein	NA	NA	NA	NA
WP_167368535.1\|1690777_1691587_-\|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	S4VW33	Pandoravirus	1.1e-12	30.6

DBSCAN-SWA_7

2319462 : 2412092

uncultured_Caudovirales_phage(58.33%)

plate,transposase,protease,tRNA,integrase,tail,head

attL 2377905:2377935|attR 2412343:2412373

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019691508.1\|2319462_2320332_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_071552123.1\|2320331_2321498_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_071552124.1\|2321594_2322896_-	GTPase HflX	NA	NA	NA	NA
WP_019691505.1\|2322908_2323169_-	RNA chaperone Hfq	NA	NA	NA	NA
WP_071552125.1\|2323262_2324234_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_174553354.1\|2324233_2326132_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.8e-93	34.7
WP_071552127.1\|2326140_2327577_-	N-acetylmuramoyl-L-alanine amidase	A0A067ZJB6	Vibrio_phage	7.7e-12	29.3
WP_071552128.1\|2327577_2328048_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_071552129.1\|2328035_2329535_-	bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase	NA	NA	NA	NA
WP_071552130.1\|2329598_2330663_+\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_071552132.1\|2330764_2331376_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA
WP_071552134.1\|2331558_2332101_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	1.8e-25	39.2
WP_071552136.1\|2332208_2333240_+	small ribosomal subunit biogenesis GTPase RsgA	NA	NA	NA	NA
WP_071552138.1\|2333339_2334380_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_071552139.1\|2334383_2335235_-	flagellar motor stator protein MotA	NA	NA	NA	NA
WP_071552140.1\|2335401_2336940_+	HDOD domain-containing protein	NA	NA	NA	NA
WP_071552141.1\|2336983_2337808_+	thiosulfate sulfurtransferase	NA	NA	NA	NA
WP_071552142.1\|2337817_2338678_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
WP_071555742.1\|2338823_2340038_-	phosphoserine phosphatase SerB	NA	NA	NA	NA
WP_071552144.1\|2340172_2341711_+	HAMP domain-containing protein	NA	NA	NA	NA
WP_071552145.1\|2341976_2342684_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_071552147.1\|2342861_2345126_-	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	6.8e-87	34.9
WP_071552149.1\|2345204_2346188_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_071552151.1\|2346187_2348092_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	1.0e-96	36.2
WP_071552153.1\|2348135_2348744_-	esterase	NA	NA	NA	NA
WP_071552155.1\|2348909_2349725_-	3',5'-cyclic-AMP phosphodiesterase	NA	NA	NA	NA
WP_071552157.1\|2349824_2350277_-	DUF1249 domain-containing protein	NA	NA	NA	NA
WP_071552158.1\|2350267_2350885_-	NUDIX domain-containing protein	NA	NA	NA	NA
WP_071552160.1\|2351109_2351856_+	DUF3298 domain-containing protein	NA	NA	NA	NA
WP_071552162.1\|2351824_2353117_-	putative hydroxymethylpyrimidine transporter CytX	NA	NA	NA	NA
WP_071552164.1\|2353190_2355080_-	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_071552166.1\|2355553_2356993_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_071552169.1\|2357093_2358371_-	lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
WP_071552171.1\|2358394_2359285_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_071552173.1\|2359388_2359721_+	multidrug efflux SMR transporter	NA	NA	NA	NA
WP_071552174.1\|2359882_2361058_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_071552175.1\|2361054_2361864_+	aldo/keto reductase	NA	NA	NA	NA
WP_071552177.1\|2361907_2362873_+	metal ABC transporter ATPase	NA	NA	NA	NA
WP_071552179.1\|2362942_2364367_-	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	A0A0K0KVL9	Prochlorococcus_phage	4.2e-18	38.2
WP_071552181.1\|2364470_2365082_-	adenylyl-sulfate kinase	A0A2K9L4R9	Tupanvirus	5.6e-20	41.6
WP_071552182.1\|2365074_2365779_-	sulfotransferase family 2 domain-containing protein	B2ZYD5	Ralstonia_phage	1.2e-13	28.1
WP_071552183.1\|2365966_2367775_-	lipid A export permease/ATP-binding protein MsbA	W8CYL7	Bacillus_phage	1.7e-56	31.2
WP_071552184.1\|2367790_2368963_-	O-antigen ligase family protein	NA	NA	NA	NA
WP_071552185.1\|2369072_2369672_+	toluene tolerance protein	NA	NA	NA	NA
WP_071552186.1\|2369663_2370767_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_071552187.1\|2370849_2371806_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
WP_081427299.1\|2371890_2373318_-	PIG-L family deacetylase	NA	NA	NA	NA
WP_071552188.1\|2373314_2374211_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_071552189.1\|2374210_2375341_-	glycosyltransferase	NA	NA	NA	NA
WP_071552190.1\|2375324_2377082_-	carbamoyltransferase	E3SL71	Synechococcus_phage	5.2e-34	31.1
WP_071552191.1\|2377429_2377801_+	hypothetical protein	NA	NA	NA	NA
2377905:2377935	attL	NA	NA	NA	NA
WP_071552192.1\|2378647_2379076_-\|tail	tail fiber assembly protein	A0A2P1JUG3	Erwinia_phage	1.2e-16	42.4
WP_071552193.1\|2379089_2380094_-	hypothetical protein	NA	NA	NA	NA
WP_174553331.1\|2380137_2380668_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_071552194.1\|2380664_2381735_-\|plate	baseplate J/gp47 family protein	A0A2H4JC98	uncultured_Caudovirales_phage	1.1e-71	42.3
WP_071552195.1\|2381736_2382087_-	phage GP46 family protein	A0A2H4JDR8	uncultured_Caudovirales_phage	8.1e-40	69.8
WP_071552196.1\|2382452_2383013_-\|plate	phage baseplate assembly protein	A0A2H4JFE0	uncultured_Caudovirales_phage	1.2e-61	59.1
WP_129587003.1\|2383012_2384125_-\|tail	phage tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	1.6e-158	72.8
WP_071552198.1\|2384126_2385452_-	DNA circularization N-terminal domain-containing protein	A0A2H4JGT4	uncultured_Caudovirales_phage	4.0e-140	56.8
WP_071552199.1\|2385448_2387692_-\|tail	phage tail tape measure protein	A0A2H4JC53	uncultured_Caudovirales_phage	1.1e-219	58.3
WP_071552200.1\|2387825_2388212_-	hypothetical protein	A0A2H4JD25	uncultured_Caudovirales_phage	9.9e-39	70.7
WP_071552201.1\|2388216_2388588_-\|tail	phage tail protein	A0A2H4J9F8	uncultured_Caudovirales_phage	2.1e-46	72.4
WP_071552202.1\|2388601_2389702_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A2H4JFT7	uncultured_Caudovirales_phage	3.0e-141	74.0
WP_071552203.1\|2389698_2389890_-	DUF2635 domain-containing protein	A0A2H4JED6	uncultured_Caudovirales_phage	1.1e-09	56.9
WP_071552204.1\|2389889_2390441_-	DUF1834 family protein	A0A2H4JEC0	uncultured_Caudovirales_phage	6.1e-58	58.3
WP_071552205.1\|2390440_2390929_-	DUF1320 family protein	A0A2H4JB66	uncultured_Caudovirales_phage	1.3e-48	62.5
WP_071552206.1\|2390925_2391441_-	hypothetical protein	NA	NA	NA	NA
WP_071552208.1\|2391450_2392344_-\|head	Mu-like prophage major head subunit gpT family protein	A0A0A1IWZ9	Pseudomonas_phage	5.7e-90	56.1
WP_071552210.1\|2392369_2393347_-	hypothetical protein	A0A2H4J9A2	uncultured_Caudovirales_phage	2.9e-95	56.8
WP_071552212.1\|2393599_2394163_-	phage virion morphogenesis protein	A0A2H4J9E5	uncultured_Caudovirales_phage	1.4e-65	68.5
WP_071552213.1\|2394172_2395441_-	hypothetical protein	A0A2H4IYU7	uncultured_Caudovirales_phage	5.0e-156	63.0
WP_071552215.1\|2395510_2395870_+	hypothetical protein	NA	NA	NA	NA
WP_071552217.1\|2395877_2397434_-	DUF935 domain-containing protein	A0A2H4JGA9	uncultured_Caudovirales_phage	8.7e-227	75.9
WP_071552219.1\|2397433_2398987_-	hypothetical protein	A0A2H4JF57	uncultured_Caudovirales_phage	1.1e-248	81.4
WP_071552221.1\|2398983_2399496_-	DUF3486 family protein	A0A2H4JD50	uncultured_Caudovirales_phage	3.5e-60	73.3
WP_071552223.1\|2399499_2399811_-	hypothetical protein	A0A2H4JGU5	uncultured_Caudovirales_phage	9.4e-40	72.5
WP_081427300.1\|2399807_2400140_-	hypothetical protein	A0A2H4J7V5	uncultured_Caudovirales_phage	8.8e-28	61.8
WP_081427301.1\|2400136_2400331_-	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_071552227.1\|2400344_2400980_-	DNA-packaging protein	A0A2H4JEG6	uncultured_Caudovirales_phage	3.8e-27	38.0
WP_167368561.1\|2400976_2401588_-	transglycosylase SLT domain-containing protein	A0A2H4J9H7	uncultured_Caudovirales_phage	1.6e-88	75.7
WP_129587005.1\|2401611_2401863_-	hypothetical protein	A0A2H4J783	uncultured_Caudovirales_phage	1.7e-23	72.3
WP_071552230.1\|2401901_2402243_-	hypothetical protein	NA	NA	NA	NA
WP_071552231.1\|2402352_2402895_-	hypothetical protein	NA	NA	NA	NA
WP_071552232.1\|2402917_2403355_-	transcriptional regulator	A0A2H4J0B0	uncultured_Caudovirales_phage	1.2e-40	57.0
WP_071552233.1\|2403354_2403768_-	regulatory protein GemA	A0A2H4J581	uncultured_Caudovirales_phage	6.2e-39	59.9
WP_174553332.1\|2403764_2404058_-	hypothetical protein	NA	NA	NA	NA
WP_071552235.1\|2404113_2404785_-	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	1.0e-67	59.5
WP_071552236.1\|2404859_2405081_-	hypothetical protein	NA	NA	NA	NA
WP_071552237.1\|2405089_2405512_-	hypothetical protein	A0A076FRH0	Pseudomonas_phage	7.5e-24	44.0
WP_071552238.1\|2405514_2405745_-	hypothetical protein	NA	NA	NA	NA
WP_071552239.1\|2405746_2406370_-	DUF3164 family protein	A0A0A1IVF8	Pseudomonas_phage	3.4e-81	75.5
WP_071552240.1\|2406381_2406705_-	hypothetical protein	H6V800	Pseudomonas_virus	5.6e-19	54.5
WP_071552241.1\|2406688_2407066_-	hypothetical protein	A0A0A1IWY8	Pseudomonas_phage	2.8e-30	60.0
WP_081427302.1\|2407062_2407677_-	hypothetical protein	L7P7I3	Pseudomonas_phage	2.2e-32	43.0
WP_071552242.1\|2407676_2408399_-	AAA family ATPase	A0A2H4J809	uncultured_Caudovirales_phage	5.7e-96	72.1
WP_071552243.1\|2408423_2410457_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4JEQ4	uncultured_Caudovirales_phage	7.4e-234	59.8
WP_071552244.1\|2410449_2410890_-	hypothetical protein	L7P7J4	Pseudomonas_phage	2.9e-58	79.7
WP_071552245.1\|2410892_2411228_-	helix-turn-helix domain-containing protein	A0A2H4J3B6	uncultured_Caudovirales_phage	5.8e-27	59.6
WP_071552246.1\|2411387_2412092_+	helix-turn-helix domain-containing protein	A0A076FRF7	Pseudomonas_phage	9.1e-83	64.4
2412343:2412373	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2568572 : 2619380

Rhizobium_phage(22.22%)

portal,terminase,protease,tRNA,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071552357.1\|2568572_2570027_-\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_010464555.1\|2570356_2571763_+	glutamate--ammonia ligase	NA	NA	NA	NA
WP_071552359.1\|2571895_2572459_+	chorismate mutase	NA	NA	NA	NA
WP_071552360.1\|2572654_2573161_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_071552361.1\|2573157_2573784_+	DUF4124 domain-containing protein	NA	NA	NA	NA
WP_071552362.1\|2574016_2575102_+	nitrogen regulation protein NR(II)	Q8QKV7	Ectocarpus_siliculosus_virus	2.3e-08	23.5
WP_071552363.1\|2575098_2576535_+	nitrogen regulation protein NR(I)	NA	NA	NA	NA
WP_071552364.1\|2576995_2577436_-	hypothetical protein	NA	NA	NA	NA
WP_019691309.1\|2577434_2577890_+\|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_071552365.1\|2578083_2578566_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_071552366.1\|2578605_2578860_-	glutaredoxin 3	V9QKN6	Rhizobium_phage	1.8e-12	42.1
WP_054595164.1\|2578861_2579275_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_071552367.1\|2579426_2580956_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_071552368.1\|2581095_2582388_+	murein hydrolase activator EnvC	A8ATH6	Listeria_phage	1.8e-07	34.8
WP_071552369.1\|2582422_2583730_+	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	5.0e-26	29.5
WP_071552370.1\|2583731_2584511_+	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_071552371.1\|2584607_2585363_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_054595158.1\|2585428_2586199_-	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_054595157.1\|2586208_2586946_-	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_071552372.1\|2586988_2587246_-	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_071552373.1\|2587245_2587884_-	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_071552374.1\|2587883_2588477_-	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_071552375.1\|2588703_2590365_-	OFA family MFS transporter	NA	NA	NA	NA
WP_071552376.1\|2590639_2591038_+	acetyl-CoA sensor PanZ family protein	NA	NA	NA	NA
WP_071552377.1\|2591120_2593352_+	AsmA family protein	NA	NA	NA	NA
WP_071552378.1\|2593348_2594416_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_054595151.1\|2594412_2594685_+	oxidative damage protection protein	NA	NA	NA	NA
WP_071552379.1\|2595379_2595964_+\|tail	tail assembly protein	A0A1B0VMI5	Pseudomonas_phage	4.6e-64	68.6
WP_071552380.1\|2596004_2596358_+	hypothetical protein	NA	NA	NA	NA
WP_071552381.1\|2596674_2597274_+	hypothetical protein	NA	NA	NA	NA
WP_071552382.1\|2599509_2600592_+	hypothetical protein	NA	NA	NA	NA
WP_071552383.1\|2600710_2601502_+	TSUP family transporter	NA	NA	NA	NA
WP_071552384.1\|2601642_2602098_-	hypothetical protein	NA	NA	NA	NA
WP_071552385.1\|2602342_2603308_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_071552386.1\|2603345_2603762_+	hypothetical protein	NA	NA	NA	NA
WP_071552387.1\|2603768_2604221_+	hypothetical protein	NA	NA	NA	NA
WP_054595147.1\|2604411_2604642_+	antitoxin	NA	NA	NA	NA
WP_071552388.1\|2604641_2605049_+\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA
WP_071552389.1\|2605120_2606512_-	GABA permease	NA	NA	NA	NA
WP_071552390.1\|2607066_2607840_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.3e-20	31.6
WP_071552391.1\|2607853_2608609_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_071552392.1\|2608689_2609385_+	ABC transporter permease	NA	NA	NA	NA
WP_071552393.1\|2609381_2610071_+	ABC transporter permease	NA	NA	NA	NA
WP_071552394.1\|2611591_2612833_+	nucleoside deaminase	NA	NA	NA	NA
WP_071552395.1\|2613019_2613841_+	FkbM family methyltransferase	NA	NA	NA	NA
WP_071552396.1\|2613875_2614403_+	serine acetyltransferase	NA	NA	NA	NA
WP_071552397.1\|2614706_2615021_-\|head	phage head closure protein	NA	NA	NA	NA
WP_071552398.1\|2615020_2615302_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_071552399.1\|2615298_2616795_-\|terminase	terminase large subunit	F1C585	Cronobacter_phage	4.5e-180	62.7
WP_071552400.1\|2616791_2617253_-	TerS protein	NA	NA	NA	NA
WP_071552401.1\|2617267_2617633_-	HNH endonuclease	NA	NA	NA	NA
WP_071552402.1\|2617629_2618865_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	9.5e-67	40.3
WP_071552403.1\|2618861_2619380_-\|head,protease	HK97 family phage prohead protease	B4UTP2	Rhizobium_phage	3.0e-30	48.3

DBSCAN-SWA_9

3361516 : 3403278

Catovirus(25.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071552995.1\|3361516_3363220_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	3.2e-49	29.8
WP_071552996.1\|3363373_3364846_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_071552997.1\|3364954_3365548_-	transcriptional regulator BetI	NA	NA	NA	NA
WP_071552998.1\|3365971_3367969_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	5.3e-19	25.8
WP_071552999.1\|3368142_3369321_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-25	37.1
WP_071553000.1\|3369317_3370163_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_071553001.1\|3370228_3371179_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_071553002.1\|3371609_3372986_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_071553003.1\|3373433_3374537_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_071553004.1\|3374652_3374916_-	hypothetical protein	NA	NA	NA	NA
WP_071553006.1\|3375255_3376419_-	gamma-butyrobetaine dioxygenase	NA	NA	NA	NA
WP_071553007.1\|3376438_3376915_-	thioesterase family protein	NA	NA	NA	NA
WP_071553008.1\|3377102_3378068_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_071553009.1\|3378193_3379081_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_071553010.1\|3379199_3380144_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_071555774.1\|3380338_3381298_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_071553011.1\|3381366_3382548_+	hypothetical protein	NA	NA	NA	NA
WP_071553012.1\|3382561_3382981_-	DUF3010 family protein	NA	NA	NA	NA
WP_071553013.1\|3383249_3383546_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071553014.1\|3383542_3384781_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_071553015.1\|3384785_3385187_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_071553017.1\|3385424_3386402_+	dipeptidase	NA	NA	NA	NA
WP_027606002.1\|3386565_3387096_+	hypothetical protein	NA	NA	NA	NA
WP_071553018.1\|3387111_3389172_+	dimethylglycine demethylation protein DgcA	NA	NA	NA	NA
WP_071553019.1\|3389312_3391262_+	dimethylglycine demethylation protein DgcB	NA	NA	NA	NA
WP_071553020.1\|3391261_3392482_+	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_071553021.1\|3392497_3393268_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_071553022.1\|3393351_3393918_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_071553023.1\|3394695_3395991_-	glycine-betaine demethylase subunit GbcA	NA	NA	NA	NA
WP_071553024.1\|3396273_3397374_+	glycine-betaine demethylase subunit GbcB	NA	NA	NA	NA
WP_071553025.1\|3397428_3397731_-	hypothetical protein	NA	NA	NA	NA
WP_071553026.1\|3398594_3398981_-	hypothetical protein	NA	NA	NA	NA
WP_071553027.1\|3398977_3400453_-	hypothetical protein	A0A2H4JEI9	uncultured_Caudovirales_phage	5.4e-109	59.9
WP_071553028.1\|3400449_3400935_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_071553029.1\|3401130_3403278_-\|holin	phospholipase C, phosphocholine-specific	NA	NA	NA	NA

DBSCAN-SWA_10

4523321 : 4574947

Pseudomonas_phage(50.0%)

terminase,holin,lysis,capsid,integrase,tail

attL 4523271:4523292|attR 4574284:4574305

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4523271:4523292	attL	NA	NA	NA	NA
WP_071554022.1\|4523321_4524527_-\|integrase	site-specific integrase	J7HXC4	Pseudomonas_phage	1.2e-122	58.4
WP_071554024.1\|4524749_4525289_-	hypothetical protein	A0A1B0VM52	Pseudomonas_phage	7.1e-43	66.7
WP_161492351.1\|4525340_4525514_-	hypothetical protein	NA	NA	NA	NA
WP_071554026.1\|4525560_4525890_-	hypothetical protein	A0A1B0VM42	Pseudomonas_phage	1.7e-44	71.7
WP_071554028.1\|4525937_4526117_-	hypothetical protein	NA	NA	NA	NA
WP_071554030.1\|4526113_4526533_-	hypothetical protein	NA	NA	NA	NA
WP_071554032.1\|4526529_4527153_-	hypothetical protein	NA	NA	NA	NA
WP_071554034.1\|4527204_4527474_+	hypothetical protein	NA	NA	NA	NA
WP_071554035.1\|4527571_4527805_+	hypothetical protein	NA	NA	NA	NA
WP_129586970.1\|4527830_4528136_+	hypothetical protein	NA	NA	NA	NA
WP_071554039.1\|4528458_4530192_-	DNA cytosine methyltransferase	A0A2I7QRH3	Vibrio_phage	7.5e-102	42.8
WP_071554041.1\|4530276_4530525_+	hypothetical protein	NA	NA	NA	NA
WP_071554043.1\|4530609_4530822_-	hypothetical protein	A0A2H4J2C6	uncultured_Caudovirales_phage	7.9e-14	54.0
WP_071554044.1\|4530818_4530998_-	hypothetical protein	NA	NA	NA	NA
WP_071554046.1\|4531099_4531312_+	hypothetical protein	NA	NA	NA	NA
WP_129586971.1\|4531393_4531606_+	hypothetical protein	NA	NA	NA	NA
WP_071554050.1\|4531674_4532682_-	nucleoid-associated protein YejK	L7TI92	Pseudomonas_virus	8.4e-130	68.7
WP_071554054.1\|4533024_4533516_-	hypothetical protein	A0A1B0VMB5	Pseudomonas_phage	2.0e-20	40.5
WP_071554056.1\|4533603_4534266_-	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	7.6e-31	37.3
WP_071554058.1\|4534265_4535255_-	recombinase RecT	A0A193GYL3	Enterobacter_phage	8.4e-66	56.3
WP_071555815.1\|4535308_4536430_-	hypothetical protein	NA	NA	NA	NA
WP_071554059.1\|4536577_4536811_-	hypothetical protein	NA	NA	NA	NA
WP_071554060.1\|4536807_4537041_-	hypothetical protein	NA	NA	NA	NA
WP_071555816.1\|4537046_4537295_-	hypothetical protein	A0A2H4J404	uncultured_Caudovirales_phage	3.0e-20	63.3
WP_071554062.1\|4537881_4538661_-	hypothetical protein	A0A1B0YZY3	Pseudomonas_phage	6.3e-93	67.4
WP_071554064.1\|4538737_4539121_-	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	5.0e-27	63.6
WP_071554066.1\|4539688_4539937_-	DUF1654 domain-containing protein	A0A0H5ARP1	Pseudomonas_phage	2.4e-06	36.9
WP_071554068.1\|4540088_4540337_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_071554070.1\|4540336_4540678_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_071554072.1\|4540788_4541028_-	hypothetical protein	NA	NA	NA	NA
WP_081427319.1\|4541315_4541504_+	hypothetical protein	NA	NA	NA	NA
WP_071554074.1\|4541498_4542299_-	helix-turn-helix domain-containing protein	A0A2H4J6Q0	uncultured_Caudovirales_phage	7.5e-57	46.2
WP_071555818.1\|4542415_4542613_+	helix-turn-helix domain-containing protein	A0A2H4JF66	uncultured_Caudovirales_phage	3.1e-12	60.7
WP_071554075.1\|4542768_4543581_+	phage regulatory protein/antirepressor Ant	A0A0U4J8Z7	Pseudomonas_phage	4.6e-38	41.9
WP_071554076.1\|4543577_4543910_+	hypothetical protein	NA	NA	NA	NA
WP_081427320.1\|4543906_4544695_+	hypothetical protein	A0A1J0MCP9	Streptomyces_phage	2.8e-16	40.3
WP_071555819.1\|4544730_4545444_+	Replication protein P	A0A2D1GNB3	Pseudomonas_phage	1.1e-94	75.7
WP_071554078.1\|4545436_4545655_+	hypothetical protein	NA	NA	NA	NA
WP_071554080.1\|4545654_4546092_+	hypothetical protein	NA	NA	NA	NA
WP_071554082.1\|4546084_4546672_+	DUF1367 family protein	Q9MC49	Pseudomonas_phage	2.1e-93	81.5
WP_161492352.1\|4546668_4546806_+	hypothetical protein	NA	NA	NA	NA
WP_071554084.1\|4546802_4547381_+	recombination protein NinG	A0A125RNK9	Pseudomonas_phage	1.1e-70	67.2
WP_071554086.1\|4547377_4547959_+	hypothetical protein	A0A059VF83	Pseudomonas_phage	3.8e-74	68.9
WP_071554088.1\|4548420_4549143_+	DUF1983 domain-containing protein	NA	NA	NA	NA
WP_071554090.1\|4549197_4549575_+	hypothetical protein	A0A2H4J7X6	uncultured_Caudovirales_phage	1.1e-50	76.6
WP_071554092.1\|4549574_4549856_+\|holin	phage holin family protein	A0A2H4J0H1	uncultured_Caudovirales_phage	1.3e-32	70.7
WP_071554095.1\|4549965_4550307_-	hypothetical protein	NA	NA	NA	NA
WP_071554097.1\|4550395_4550917_+	hypothetical protein	A0A0H5AUE2	Pseudomonas_phage	1.6e-60	74.3
WP_071554099.1\|4550918_4552406_+\|terminase	terminase	A0A2H4J2I1	uncultured_Caudovirales_phage	4.2e-255	83.5
WP_071554101.1\|4552402_4553818_+	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	3.5e-243	86.2
WP_071554103.1\|4553792_4554878_+\|capsid	minor capsid protein	A0A1B0VMF3	Pseudomonas_phage	7.0e-183	92.0
WP_071554105.1\|4554960_4555689_+	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	2.5e-120	93.4
WP_071554107.1\|4555701_4556667_+	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	3.9e-161	89.3
WP_071554109.1\|4556712_4557030_+	hypothetical protein	A0A1B0VMF7	Pseudomonas_phage	4.5e-13	65.0
WP_071554111.1\|4557033_4557537_+	hypothetical protein	A0A1B0VND3	Pseudomonas_phage	1.5e-74	84.4
WP_071554113.1\|4557539_4557911_+	hypothetical protein	A0A1B0VRJ4	Pseudomonas_phage	1.6e-41	69.9
WP_071554115.1\|4557907_4558561_+	hypothetical protein	A0A1B0VMI1	Pseudomonas_phage	1.1e-101	85.2
WP_071554117.1\|4558557_4558974_+	DUF4128 domain-containing protein	A0A2H4J4N2	uncultured_Caudovirales_phage	1.1e-40	60.9
WP_071554119.1\|4559043_4559697_+\|tail	phage tail protein	A0A1B0VMG2	Pseudomonas_phage	2.0e-100	85.7
WP_071554121.1\|4559700_4560081_+\|tail	phage tail assembly chaperone	A0A2H4J9Y6	uncultured_Caudovirales_phage	5.9e-28	52.0
WP_071554123.1\|4560140_4560398_+	DUF1799 domain-containing protein	A0A2H4J4F7	uncultured_Caudovirales_phage	3.1e-20	56.1
WP_071554125.1\|4560394_4563661_+\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	7.1e-178	50.3
WP_071554127.1\|4563660_4563999_+\|tail	phage tail protein	A0A2H4JI07	uncultured_Caudovirales_phage	1.1e-49	78.6
WP_071554129.1\|4564759_4565515_+	C40 family peptidase	A0A2H4J1J7	uncultured_Caudovirales_phage	5.1e-132	82.9
WP_071554131.1\|4565548_4565947_+	hypothetical protein	A0A1B0VMK5	Pseudomonas_phage	2.2e-17	40.9
WP_081427361.1\|4566022_4566583_+\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	3.6e-66	69.9
WP_071554135.1\|4566639_4570272_+\|tail	phage tail protein	A0A2H4J8Z6	uncultured_Caudovirales_phage	0.0e+00	66.3
WP_071554137.1\|4570287_4570599_+	hypothetical protein	NA	NA	NA	NA
WP_071554139.1\|4570598_4571279_+	hypothetical protein	A0A2D1GNS6	Pseudomonas_phage	3.1e-43	40.9
WP_071554141.1\|4571343_4572294_+	hypothetical protein	A0A2H4J1J6	uncultured_Caudovirales_phage	4.4e-80	52.7
WP_081427322.1\|4572345_4572771_+	structural protein	A0A2H4J6R1	uncultured_Caudovirales_phage	3.6e-66	86.4
WP_071554143.1\|4572776_4573298_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	9.2e-56	69.2
WP_071554145.1\|4573302_4573698_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_071554147.1\|4574389_4574947_-	Smr/MutS family protein	A0A0P0IDT4	Acinetobacter_phage	3.1e-17	33.1
4574284:4574305	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4956203 : 5036495

Burkholderia_phage(36.84%)

plate,transposase,tRNA,lysis,capsid,integrase,tail

attL 4948723:4948757|attR 5039832:5039866

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4948723:4948757	attL	NA	NA	NA	NA
WP_071554725.1\|4956203_4957301_+\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_071554727.1\|4957344_4958400_-	permease	NA	NA	NA	NA
WP_071554728.1\|4958487_4959162_-	histidine phosphatase family protein	M1IB93	Acanthocystis_turfacea_Chlorella_virus	3.2e-32	38.5
WP_071554730.1\|4959492_4960191_+	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_071554732.1\|4960260_4960881_-	LysE family transporter	NA	NA	NA	NA
WP_071554734.1\|4961152_4962127_+	porphobilinogen synthase	NA	NA	NA	NA
WP_071554736.1\|4962145_4963675_-	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_071554738.1\|4963766_4964426_-	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
WP_071554740.1\|4970352_4970727_-	DUF2784 domain-containing protein	NA	NA	NA	NA
WP_071554742.1\|4970943_4972014_+	hypothetical protein	NA	NA	NA	NA
WP_071554744.1\|4972070_4972634_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_071554746.1\|4972649_4974305_-	MCE family protein	NA	NA	NA	NA
WP_071554748.1\|4974285_4974930_-	paraquat-inducible protein A	NA	NA	NA	NA
WP_071554751.1\|4974926_4975523_-	paraquat-inducible protein A	NA	NA	NA	NA
WP_071554753.1\|4975726_4976167_-	CBS domain-containing protein	NA	NA	NA	NA
WP_071554755.1\|4976375_4976705_-	hypothetical protein	NA	NA	NA	NA
WP_167368548.1\|4977308_4979672_+	DNA polymerase II	A0A0P0YM26	Yellowstone_lake_phycodnavirus	2.2e-32	26.8
WP_054598130.1\|4980111_4980327_+	TOBE domain-containing protein	NA	NA	NA	NA
WP_071554759.1\|4980426_4981632_-	benzoate/H(+) symporter BenE family transporter	NA	NA	NA	NA
WP_071554761.1\|4981982_4983371_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_071554762.1\|4983661_4984555_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_167368577.1\|4984551_4985433_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_071554766.1\|4985462_4986605_-	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.8e-27	35.6
WP_071554768.1\|4986828_4987605_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_071554772.1\|4987885_4989262_+	glutamine synthetase	NA	NA	NA	NA
WP_071554774.1\|4989456_4990947_+	aldehyde dehydrogenase	NA	NA	NA	NA
WP_071554776.1\|4990999_4992298_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_071554778.1\|4992631_4993180_+	cupin domain-containing protein	NA	NA	NA	NA
WP_071554780.1\|4993258_4993705_+	NUDIX hydrolase	NA	NA	NA	NA
WP_071554782.1\|4993983_4994493_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_071554784.1\|4994599_4995073_+	DUF2867 domain-containing protein	NA	NA	NA	NA
WP_071554786.1\|4995227_4996280_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_071554788.1\|4996630_4997209_-	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA
WP_071554790.1\|4997979_4998405_-\|tail	phage tail protein	Q9ZXK5	Pseudomonas_virus	8.1e-26	48.6
WP_071554792.1\|4998417_5000085_-	hypothetical protein	A0A291LA16	Bordetella_phage	2.7e-16	37.0
WP_071554794.1\|5000084_5000666_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	2.6e-51	58.2
WP_071554796.1\|5000658_5001780_-\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	2.9e-91	49.3
WP_071554798.1\|5001763_5002141_-	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	3.9e-32	61.2
WP_071554800.1\|5002245_5002671_-	hypothetical protein	NA	NA	NA	NA
WP_071554802.1\|5002697_5003231_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_071554804.1\|5003249_5004362_-	late control protein D	A4JWL3	Burkholderia_virus	1.7e-62	38.7
WP_071554806.1\|5004349_5004556_-\|tail	tail protein X	Q6QIA3	Burkholderia_phage	7.4e-17	58.0
WP_071554808.1\|5004555_5005434_-\|tail	phage tail protein	A0A059WRP1	Vibrio_phage	5.4e-08	34.1
WP_071554810.1\|5005433_5008130_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.6e-101	34.3
WP_071554812.1\|5008291_5008621_-\|tail	phage tail assembly protein	Q6QIA8	Burkholderia_phage	9.7e-11	42.3
WP_071554814.1\|5008797_5009034_-	hypothetical protein	NA	NA	NA	NA
WP_071554816.1\|5009064_5009589_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	5.8e-50	54.7
WP_071554818.1\|5009589_5011014_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A4JWK5	Burkholderia_virus	2.0e-185	67.0
WP_081427275.1\|5011003_5011279_-	hypothetical protein	NA	NA	NA	NA
WP_081427327.1\|5011275_5011764_-	hypothetical protein	NA	NA	NA	NA
WP_071554820.1\|5011760_5012195_-	DUF1320 domain-containing protein	Q6QIB3	Burkholderia_phage	9.1e-41	56.7
WP_071554822.1\|5012202_5012535_-	DUF2190 family protein	Q6QIB4	Burkholderia_phage	2.0e-24	57.3
WP_071554823.1\|5012531_5012936_-	hypothetical protein	NA	NA	NA	NA
WP_071554825.1\|5012944_5013868_-	hypothetical protein	A4JWK0	Burkholderia_virus	9.5e-80	49.3
WP_071554827.1\|5013880_5014987_-	peptidase	A4JWJ9	Burkholderia_virus	5.1e-88	46.5
WP_071554829.1\|5015220_5015697_-	phage virion morphogenesis protein	Q6QIB8	Burkholderia_phage	5.3e-18	37.6
WP_071554831.1\|5015710_5016541_-\|capsid	minor capsid protein	A0A0A1IX74	Pseudomonas_phage	4.7e-86	59.8
WP_071554833.1\|5016542_5018045_-	DUF935 family protein	Q6QIC0	Burkholderia_phage	1.4e-160	57.6
WP_071554835.1\|5018041_5019646_-	hypothetical protein	A0A219VH72	Ochrobactrum_phage	4.6e-114	45.6
WP_071554837.1\|5019642_5020194_-	DUF3486 family protein	J9SH37	Pseudomonas_phage	6.6e-28	46.0
WP_071554839.1\|5020196_5020493_-	hypothetical protein	J9SNG3	Pseudomonas_phage	2.6e-23	60.0
WP_060765883.1\|5020489_5020795_-	hypothetical protein	J9STR5	Pseudomonas_phage	2.3e-14	41.7
WP_071554841.1\|5020791_5021010_-	TraR/DksA C4-type zinc finger protein	Q9ZXI6	Pseudomonas_virus	1.8e-05	43.7
WP_081427328.1\|5021016_5021631_-\|lysis	lysis protein	J9SVX5	Pseudomonas_phage	2.2e-40	50.0
WP_071554845.1\|5021617_5021818_-	hypothetical protein	NA	NA	NA	NA
WP_071554847.1\|5021814_5022036_-	hypothetical protein	NA	NA	NA	NA
WP_071554849.1\|5022032_5022527_-	structural protein	J9Q7Y7	Salmonella_phage	3.7e-38	50.9
WP_071554851.1\|5022633_5023161_-	hypothetical protein	Q6QID0	Burkholderia_phage	2.1e-55	64.0
WP_071554853.1\|5023371_5024043_-	hypothetical protein	NA	NA	NA	NA
WP_071554855.1\|5024062_5024734_-	hypothetical protein	NA	NA	NA	NA
WP_071554857.1\|5024754_5025177_-	helix-turn-helix domain-containing protein	Q6QID2	Burkholderia_phage	1.5e-11	61.3
WP_071554859.1\|5025341_5025596_+	DNA-binding protein	NA	NA	NA	NA
WP_071554861.1\|5025608_5025911_+	helix-turn-helix domain-containing protein	Q5ZR02	Pseudomonas_phage	1.3e-25	65.2
WP_071554863.1\|5025924_5026857_+	hypothetical protein	J9SND0	Pseudomonas_phage	1.3e-73	53.4
WP_071554865.1\|5026859_5028632_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0S4L2U5	Pseudomonas_phage	2.3e-191	60.0
WP_071554867.1\|5028631_5029813_+	AAA family ATPase	A4JWN1	Burkholderia_virus	1.6e-132	62.9
WP_071554869.1\|5029814_5030132_+	hypothetical protein	NA	NA	NA	NA
WP_071554871.1\|5030128_5030413_+	hypothetical protein	NA	NA	NA	NA
WP_071554873.1\|5030497_5031115_+	DUF3164 family protein	B5TA85	Burkholderia_phage	1.4e-42	41.8
WP_071554875.1\|5031116_5031806_+	DUF2786 domain-containing protein	Q5ZR11	Pseudomonas_phage	3.4e-82	67.2
WP_071554877.1\|5031807_5032026_+	hypothetical protein	NA	NA	NA	NA
WP_071554879.1\|5032060_5032501_+	regulatory protein GemA	Q6QIE7	Burkholderia_phage	2.4e-28	54.5
WP_071554881.1\|5032497_5032851_+	DNA-binding protein	NA	NA	NA	NA
WP_071554883.1\|5033194_5033671_+	hypothetical protein	NA	NA	NA	NA
WP_071554885.1\|5033689_5034394_-	DUF4225 domain-containing protein	NA	NA	NA	NA
WP_071554886.1\|5034386_5034887_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_071551365.1\|5035109_5036495_-\|transposase	IS4 family transposase	NA	NA	NA	NA
5039832:5039866	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP017887

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

173622 : 262344

Ralstonia_phage(20.0%)

transposase,integrase,plate

attL 173495:173519|attR 176845:176869

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
173495:173519	attL	NA	NA	NA	NA
WP_071556022.1\|173622_174846_+\|integrase	tyrosine-type recombinase/integrase	A0A1B1P7C7	Bacillus_phage	2.6e-08	24.5
WP_071556023.1\|174842_175787_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_071556024.1\|175779_176778_+\|integrase	tyrosine-type recombinase/integrase	A0A2P1A0S4	Gordonia_phage	7.0e-12	31.4
WP_129587038.1\|177989_179518_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.7e-05	24.0
176845:176869	attR	NA	NA	NA	NA
WP_150128050.1\|179514_179871_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_071556152.1\|179867_180200_-\|transposase	transposase	NA	NA	NA	NA
WP_071556027.1\|184189_185176_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_071556028.1\|185388_187623_+	catalase/peroxidase HPI	NA	NA	NA	NA
WP_129587039.1\|187898_189122_-	OprD family porin	NA	NA	NA	NA
WP_071556029.1\|189348_190269_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_080394283.1\|195766_196123_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_071556030.1\|196141_197674_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	9.2e-88	37.3
WP_129587040.1\|197643_197997_+	hypothetical protein	NA	NA	NA	NA
WP_071556031.1\|197963_198224_-	hypothetical protein	NA	NA	NA	NA
WP_071556030.1\|198313_199846_-\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	9.2e-88	37.3
WP_080394283.1\|199864_200221_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_071556032.1\|200840_201050_-	hypothetical protein	NA	NA	NA	NA
WP_129587041.1\|201208_201958_-	hypothetical protein	NA	NA	NA	NA
WP_071556034.1\|201966_204963_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_071556035.1\|204959_205415_-	hypothetical protein	NA	NA	NA	NA
WP_071556154.1\|205595_205925_+	hypothetical protein	NA	NA	NA	NA
WP_071556036.1\|206016_206985_+	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	1.8e-60	41.2
WP_071556037.1\|208162_209071_+	hydrolase or metal-binding protein	NA	NA	NA	NA
WP_071556038.1\|209092_209425_+	hypothetical protein	NA	NA	NA	NA
WP_071556039.1\|209439_209787_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071556040.1\|209928_210288_+	hypothetical protein	NA	NA	NA	NA
WP_081427387.1\|210405_211035_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_071556155.1\|211200_211929_+	hypothetical protein	NA	NA	NA	NA
WP_071556042.1\|213210_213729_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_071556043.1\|213826_216580_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	7.3e-43	43.5
WP_071556044.1\|216572_217187_+	hypothetical protein	NA	NA	NA	NA
WP_071556045.1\|217183_217921_+	hypothetical protein	NA	NA	NA	NA
WP_161492370.1\|217985_218129_+	hypothetical protein	NA	NA	NA	NA
WP_071556046.1\|218121_220266_+	alpha/beta fold hydrolase	A0A077K801	Ralstonia_phage	2.6e-35	25.2
WP_071556047.1\|220418_221864_+	DUF2875 family protein	NA	NA	NA	NA
WP_161492371.1\|221980_222127_+	hypothetical protein	NA	NA	NA	NA
WP_071556048.1\|222123_224271_+	DUF3274 domain-containing protein	A0A077K801	Ralstonia_phage	8.0e-37	25.9
WP_129587043.1\|224270_225869_+	DUF2875 family protein	NA	NA	NA	NA
WP_071556050.1\|225941_226202_+	PAAR domain-containing protein	E5E3Y0	Burkholderia_phage	4.5e-11	50.0
WP_071556051.1\|227994_229425_-	short-chain fatty acid transporter	NA	NA	NA	NA
WP_071556052.1\|229528_230797_-	OprD family porin	NA	NA	NA	NA
WP_071556053.1\|232021_233002_-	serine/threonine protein kinase	A0A2R8FEI0	Brazilian_cedratvirus	6.9e-12	35.5
WP_071556054.1\|232998_233727_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_071556055.1\|233726_237266_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_071556056.1\|237279_238155_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_071556057.1\|238160_239492_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_071556058.1\|239494_239995_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_071556059.1\|241214_241355_-	type VI secretion protein	NA	NA	NA	NA
WP_071556060.1\|241448_243056_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_071556061.1\|243066_245715_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	2.0e-90	30.0
WP_071556062.1\|245728_246736_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_071556156.1\|246699_248487_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_071556063.1\|248500_248914_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_071556064.1\|248927_250403_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003229587.1\|250428_250932_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_071556065.1\|250964_252521_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_071556066.1\|253457_255779_-	lipase family protein	A0A1B1IT35	uncultured_Mediterranean_phage	1.5e-09	30.1
WP_071556067.1\|255775_256570_-	hypothetical protein	NA	NA	NA	NA
WP_071556068.1\|256566_257415_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_071556157.1\|257411_259439_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	7.3e-32	27.9
WP_071556069.1\|259602_260121_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_129587038.1\|260815_262344_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.7e-05	24.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017886

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP017887

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection