CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013113	Pseudomonas aeruginosa strain Paer4_119 chromosome, complete genome	3 crisprs	csa3,DEDDh,cas3,PD-DExK,DinG,WYL	1	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013113_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013113_1

343958-344071

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013113_1

>merge|NZ_CP013113|1|343958-344071|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_CP013113|1|1|343958-344071|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013113.1\|WP_003084327.1\|352421_352976_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013113.1\|WP_003084303.1\|341922_343077_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP013113.1\|WP_003112945.1\|353241_353736_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP013113.1\|WP_003084299.1\|339248_340352_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP013113.1\|WP_003121702.1\|331845_332511_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013113.1\|WP_003121723.1\|351701_352400_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NZ_CP013113.1\|WP_003112938.1\|335545_336298_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP013113.1\|WP_003112937.1\|333890_335267_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP013113.1\|WP_003084297.1\|337762_339133_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP013113.1\|WP_003118762.1\|349251_349863_-\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_CP013113.1\|WP_003111119.1\|330804_331683_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP013113.1\|WP_003107781.1\|332573_333635_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP013113.1\|WP_003084339.1\|353738_354431_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP013113.1\|WP_003118142.1\|345114_347502_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_CP013113.1\|WP_003118141.1\|340770_341868_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP013113.1\|WP_003112941.1\|347612_348665_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP013113.1\|WP_003084290.1\|336338_337697_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP013113.1\|WP_031687187.1\|348643_349147_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013113.1\|WP_003118763.1\|349861_350881_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP013113.1\|WP_003084320.1\|350900_351653_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013113.1\|WP_003084339.1\|353738_354431_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NZ_CP013113.1\|WP_003084303.1\|341922_343077_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP013113.1\|WP_003084299.1\|339248_340352_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP013113.1\|WP_003121702.1\|331845_332511_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.12191e-09
NZ_CP013113.1\|WP_003121723.1\|351701_352400_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	9.16398e-77
NZ_CP013113.1\|WP_003112938.1\|335545_336298_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
NZ_CP013113.1\|WP_003112937.1\|333890_335267_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_CP013113.1\|WP_003084297.1\|337762_339133_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP013113.1\|WP_003118762.1\|349251_349863_-\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00342131
NZ_CP013113.1\|WP_003111119.1\|330804_331683_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP013113.1\|WP_003107781.1\|332573_333635_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NZ_CP013113.1\|WP_003118142.1\|345114_347502_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_CP013113.1\|WP_003118141.1\|340770_341868_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP013113.1\|WP_003112941.1\|347612_348665_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_CP013113.1\|WP_003084290.1\|336338_337697_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP013113.1\|WP_003112945.1\|353241_353736_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP013113.1\|WP_003118763.1\|349861_350881_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56

>NZ_CP013113.1|WP_003084303.1|341922_343077_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP013113.1|WP_003118141.1|340770_341868_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVISKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP013113.1|WP_003084299.1|339248_340352_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP013113.1|WP_003084297.1|337762_339133_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP013113.1|WP_003084290.1|336338_337697_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP013113.1|WP_003112938.1|335545_336298_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_CP013113.1|WP_003112937.1|333890_335267_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP013113.1|WP_003107781.1|332573_333635_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP013113.1|WP_003121702.1|331845_332511_-|TetR/AcrR-family-transcriptional-regulator
MQPTSPTRKPRASSQARIAAILDAARDLLADEGIGGLSIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLAGFISDLNR
>NZ_CP013113.1|WP_003111119.1|330804_331683_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_CP013113.1|WP_003118142.1|345114_347502_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAADADSPWWDDRRTERRETRADIVRAAWNASLAHLRSTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP013113.1|WP_003112941.1|347612_348665_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP013113.1|WP_031687187.1|348643_349147_-|hypothetical-protein
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDGQASKLIERVDDLQEDRLELRDKYVKRIAENVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP013113.1|WP_003118762.1|349251_349863_-|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP013113.1|WP_003118763.1|349861_350881_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP013113.1|WP_003084320.1|350900_351653_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP013113.1|WP_003121723.1|351701_352400_+|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAGIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLRVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP013113.1|WP_003084327.1|352421_352976_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP013113.1|WP_003112945.1|353241_353736_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP013113.1|WP_003084339.1|353738_354431_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Crispr_ID: NZ_CP013113_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013113_2

805128-805241

Orphan

Consensus_repeat	Method
TATCCGCCATGAAACGCCGGCGCAGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013113_2

>merge|NZ_CP013113|2|805128-805241|CRISPRCasFinder
TATCCGCCATGAAACGCCGGCGCAGCGGCGGATAACGCCGGTGGCGTTATTCGCCCTACGGCCCGACTACGGGGCCGCGGGACGCATATCCGCCGTGAAACGCCGGCGCAGCGG

>NZ_CP013113|2|2|805128-805241|CRISPRCasFinder
TATCCGCCATGAAACGCCGGCGCAGCGG	CGGATAACGCCGGTGGCGTTATTCGCCCTACGGCCCGACTACGGGGCCGCGGGACGCA
TATCCGCCGTGAAACGCCGGCGCAGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013113.1\|WP_003123955.1\|810519_811008_-\|phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|367435
NZ_CP013113.1\|WP_003118954.1\|806766_808650_-\|phenazine-specific-anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|223225
NZ_CP013113.1\|WP_003121868.1\|794897_796610_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013113.1\|WP_003093617.1\|812222_813227_+\|phenazine-specific-methyltransferase	unknown	unknown	gnl\|CDD\|366359
NZ_CP013113.1\|WP_003121870.1\|800584_800866_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013113.1\|WP_003093633.1\|803714_804923_-\|flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236046
NZ_CP013113.1\|WP_003121865.1\|784112_788429_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|341279
NZ_CP013113.1\|WP_003104727.1\|813237_814701_-\|multidrug-efflux-transporter-outer-membrane-subunit-OpmD	unknown	unknown	gnl\|CDD\|224455
NZ_CP013113.1\|WP_003115084.1\|800867_802373_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|225723
NZ_CP013113.1\|WP_003122798.1\|808646_809270_-\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238495
NZ_CP013113.1\|WP_003114727.1\|814697_817787_-\|MexW/MexI-family-multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|169983
NZ_CP013113.1\|WP_003111969.1\|798422_800585_+\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|227114
NZ_CP013113.1\|WP_003114729.1\|811037_811526_-\|phenazine-biosynthesis-protein-phzA-1	unknown	unknown	gnl\|CDD\|367435
NZ_CP013113.1\|WP_003121869.1\|796606_798331_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013113.1\|WP_003122799.1\|809266_810484_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|225741
NZ_CP013113.1\|WP_031687500.1\|788425_793855_+\|non-ribosomal-peptide-synthetase	unknown	unknown	gnl\|CDD\|341279
NZ_CP013113.1\|WP_003121872.1\|802365_803610_+\|RhtX/FptX-family-siderophore-transporter	unknown	unknown	gnl\|CDD\|131765
NZ_CP013113.1\|WP_003112073.1\|805246_805891_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|223337
NZ_CP013113.1\|WP_003117652.1\|805916_806753_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|334973
NZ_CP013113.1\|WP_003121867.1\|793851_794901_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|227037

Protein	Function_ID	Function_description	E-value
NZ_CP013113.1\|WP_003123955.1\|810519_811008_-\|phenazine-biosynthesis-protein	gnl\|CDD\|367435	pfam03284, PHZA_PHZB, Phenazine biosynthesis protein A/B.	7.14502e-105
NZ_CP013113.1\|WP_003118954.1\|806766_808650_-\|phenazine-specific-anthranilate-synthase-component-I	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	2.4585e-82
NZ_CP013113.1\|WP_003121868.1\|794897_796610_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.91013e-108
NZ_CP013113.1\|WP_003093617.1\|812222_813227_+\|phenazine-specific-methyltransferase	gnl\|CDD\|366359	pfam00891, Methyltransf_2, O-methyltransferase. This family includes a range of O-methyltransferases. These enzymes utilize S-adenosyl methionine.	8.40998e-26
NZ_CP013113.1\|WP_003114729.1\|811037_811526_-\|phenazine-biosynthesis-protein-phzA-1	gnl\|CDD\|367435	pfam03284, PHZA_PHZB, Phenazine biosynthesis protein A/B.	1.01158e-96
NZ_CP013113.1\|WP_003093633.1\|803714_804923_-\|flavin-dependent-oxidoreductase	gnl\|CDD\|236046	PRK07538, PRK07538, hypothetical protein; Provisional.	0
NZ_CP013113.1\|WP_003121865.1\|784112_788429_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|341279	cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes. The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety.	0
NZ_CP013113.1\|WP_003104727.1\|813237_814701_-\|multidrug-efflux-transporter-outer-membrane-subunit-OpmD	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	1.62823e-83
NZ_CP013113.1\|WP_003115084.1\|800867_802373_+\|PepSY-domain-containing-protein	gnl\|CDD\|225723	COG3182, PiuB, Uncharacterized iron-regulated membrane protein [Function unknown].	4.0438e-54
NZ_CP013113.1\|WP_003122798.1\|808646_809270_-\|isochorismatase-family-protein	gnl\|CDD\|238495	cd01013, isochorismatase, Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.	9.30038e-130
NZ_CP013113.1\|WP_003114727.1\|814697_817787_-\|MexW/MexI-family-multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|169983	PRK09579, PRK09579, multidrug efflux RND transporter permease subunit.	0
NZ_CP013113.1\|WP_003111969.1\|798422_800585_+\|TonB-dependent-siderophore-receptor	gnl\|CDD\|227114	COG4773, FhuE, Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism].	0
NZ_CP013113.1\|WP_003121869.1\|796606_798331_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.46902e-96
NZ_CP013113.1\|WP_003122799.1\|809266_810484_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|225741	COG3200, AroG, 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism].	0
NZ_CP013113.1\|WP_031687500.1\|788425_793855_+\|non-ribosomal-peptide-synthetase	gnl\|CDD\|341279	cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes. The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety.	0
NZ_CP013113.1\|WP_003121872.1\|802365_803610_+\|RhtX/FptX-family-siderophore-transporter	gnl\|CDD\|131765	TIGR02718, Probable_transporter., siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. [Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP013113.1\|WP_003112073.1\|805246_805891_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|223337	COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme metabolism].	2.11374e-98
NZ_CP013113.1\|WP_003117652.1\|805916_806753_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|334973	pfam02567, PhzC-PhzF, Phenazine biosynthesis-like protein. PhzC/PhzF is involved in dimerization of two 2,3-dihydro-3-oxo-anthranilic acid molecules to create PCA by P. fluorescens. This family also contains uncharacterized Mycobacterial proteins, though there is no significant sequence similarity to pfam00303 members. This family appears to be distantly related to pfam01678, including containing a weak internal duplication. However members of this family do not contain the conserved cysteines that are hypothesized to be active site residues (Bateman A pers obs).	1.94094e-111
NZ_CP013113.1\|WP_003121867.1\|793851_794901_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|227037	COG4693, PchG, Oxidoreductase (NAD-binding), involved in siderophore biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism].	9.52775e-163

>NZ_CP013113.1|WP_003093633.1|803714_804923_-|flavin-dependent-oxidoreductase
MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGRVLIGARDGHGKPLALGADVLVGADGIHSAVRAHLHPDQGPLSHGGITMWRGVTEFDRFLDGKTMIVANDEHWSRLVAYPISARHAAEGKSLVNWVCMVPSAAVGQLDNEADWNRNGRLEDVLPFFADWDLGWFDIRDLLTRNQLILQYPMVDRDPLPHWGRGRITLLGDAAHLMYPMGANGASQAILDGIELAAALARNADVAAALREYEEARRPTANKIILANREREKEEWAAASRPKTEKSAALEAITGSYRNQVERPR
>NZ_CP013113.1|WP_003121872.1|802365_803610_+|RhtX/FptX-family-siderophore-transporter
MLELYRHRRLVITLALLYLSQGIPIGLAMDALPTLLRQDGAPLQALAFLPLVGLPWVVKFLWAPWVDNHWSRRLGRRRSWILPMQCIVLACLLGLATLGLGVASAGWAVGLLALASLASATQDIATDGMAAEHFSGELLAKVNAVQIAGVMIGFFGGGAGSLILAGHFGQRAAFLVMACVPLASLCCVLALGRGDPHELPPAPAAKASLLRFLRRPLAPSLLALALLSAMTAVSGFGLSKLYLSDAGWALQDIGRLGMSGGLVTVFLGCGGGAWLVRRIGLWRGFALGVVLAGCSALLWYLQAGRWLALSEGLAWTCVLIGSLATGITSVAILTAAMRFAGQGGQAGTDVTAVQSTRDLGEMLASSFLVSLTAQIGYAGGFLTGSALAVLALLLALRLQAGEGRGEWKGRAEEA
>NZ_CP013113.1|WP_003115084.1|800867_802373_+|PepSY-domain-containing-protein
MAARPLLLSLHGGAGALFGVLLFVVLFSGAWSLGHDDLREWLRAPAQAGGEALALERLLERAGEEGVDIRDATLLLPAPGHAAFSVCDARLDCRLDLDPASGRVLPPMPALDLLLNLHKSLFVGFPGRVLVSLFGVSLLLLCLAGVLLHSRRWRDLRRWRRDRGLRLALFDLHGLIGIWGLPWLLLFGFTGALSGLGALGTLLLAPVAYPQEPNRVFVELMGPPPPAAEGRPLASRIDLDRLLAGDAVRAPGFVAQRLSLSHAGDVAGSVEIAGIRRGLPSTANFERHRYRLADGTLLGERSSAQRGFWLRAFIAVQPLHFAQYQWLGPGWSAALRGLHLAMGLGACLLCASGLYLWLQRRASAPDARVRLLQRLSQGFCAGLVAAAALLLLGLQLAPSELLAGPWPGRLFLVLWAAAGLAALLLPGDWPLARGLLGVAGLACLAAAVAHLAPWLMRGRLPALGPDLTLILCGALLIRHAWMQARAAAPPAHPRVTGDHHA
>NZ_CP013113.1|WP_003121870.1|800584_800866_+|hypothetical-protein
MPRQSGFGWAWRVPLALAGSLAAATASGYLLTRGLPLDDPLERLYAGLFGALGVGLLLLVGGLLARDPGNFAWRLGGSLLALGLALWLLAGRG
>NZ_CP013113.1|WP_003111969.1|798422_800585_+|TonB-dependent-siderophore-receptor
MKTETKVIKGRQGIARNRHTPLCLGLLLALSPLAAAVADARKDGETELPDMVISGESTSATQPPGVTTLGKVPLKPRELPQSASVIDHERLEQQNLFSLDEAMQQATGVTVQPFQLLTTAYYVRGFKVDSFELDGVPALLGNTASSPQDMAIYERVEILRGSNGLLHGTGNPAATVNLVRKRPQREFAASTTLSAGRWDRYRAEVDVGGPLSASGNVRGRAVAAYEDRDYFYDVADQGTRLLYGVTEFDLSPDTLLTVGAQYQHIDSITNMAGVPMAKDGSNLGLSRDTYLDVDWDRFKWDTYRAFGSLEQQLGGGWKGKVSAEYQEADSRLRYAGSFGAIDPQTGDGGQLMGAAYKFKSIQRSLDANLNGPVRLFGLTHELLGGVTYAQGETRQDTARFLNLPNTPVNVYRWDPHGVPRPQIGQYTSPGTTTTTQKGLYALGRIKLAEPLTLVVGGRESWWDQDTPATRFKPGRQFTPYGGLIWDFARDWSWYVSYAEVYQPQADRQTWNSEPLSPVEGKTYETGIKGELADGRLNLSLAAFRIDLENNPQEDPDHPGPPNNPFYISGGKVRSQGFELEGTGYLTPYWSLSAGYTYTSTEYLKDSQNDSGTRYSTFTPRHLLRLWSNYDLPWQDRRWSVGGGLQAQSDYSVDYRGVSMRQGGYALVNMRLGYKIDEHWTAAVNVNNLFDRTYYQSLSNPNWNNRYGEPRSFNVSLRGAF
>NZ_CP013113.1|WP_003121869.1|796606_798331_+|ABC-transporter-ATP-binding-protein
MTLFERMRALPEDCRAALRRASAWAVLAALLDAACGVLLVPLVEAWFAEGALPWRWVAALLGLSLAQALLQYLALRRGFAAGGSLAAGLVRSLVARLPRLAPPALRRVAPAEGLLRGPVMQAMGIPAHLLGPLIAALVTPLGVILGLFLIDPSIALCLLLAGAVLAALLRWSGRRNLAAEDARLAAERDAARQLQAFAERQPLLRAAQRESVARQGLEEALRSLHRSTLELLRRSLPSGLGFALAVQAAFAFALLGGAWAVERQWLDGARLVAVLVLLVRFIEPLAQLTHLDQALRGAWQALDTLLRVFALAPLRSPEPGERPHDASLAAEAVELRLEDGRALLEDISLRLEPGSLNVLVGPSGAGKSSLLALLGRLYDADAGRVLLGGVDIRRLSETTLAASRNLVFQDNGLFRGSVAWNLRMARADADLEALREAARAVGLLEEIEAWPQGWDSDVGPGGALLSGGQRQRLCLARGLLSAAPLLLLDEPTASLDAASEAQVLRSLLGLRGRRTLLVVTHRPALARQADQVLLLEKGRLRLSGRHADLLVRDDWYAGFVGLAGEESSATAVDR
>NZ_CP013113.1|WP_003121868.1|794897_796610_+|ABC-transporter-ATP-binding-protein
MTPVLWRLLRTYRWRLAAAMGLQALAGLCSLLPWMLLAWLAEPLARGQAQPALLALVLLAVLAWLGCQALAAHLAHRVDADLCNDLRLRLLAHLQRLPLDWFGRQGPDGVARLVEQDVRALHQLIAHAPNDLSNLLVVPLVALLWLAWLHPWLLLFCLLPLVLAAAGFLLLRSARYRDLVLRRNAALERLSADYGEFAHNLLLARQYPGAGIQQGAEASAAAFGEAFGAWVKRVGHLAALVYVQLSTPWLLAWVLLGALALDALGVPLALGQACAFLLLLRALAAPVQALGHGGDALLGARAAAERLQQVFDHAPLAEGRSTREPVDGAVALHGLGHAYEGVEVLADIDLELEDGSLVALVGPSGSGKSTLLHLLARYMDAQRGELEVGGLALKDMPDAVRHRHIALVGQQAAALEISLADNIALFRPDADLQEIRQAARDACLDERIMALPRGYDSVPGRDLQLSGGELQRLALARALLSPARLLLLDEPTSALDPQTARQVLRNLRERGGGRTRVIVAHRLAEVSDADLILVLVAGRLVERGEHAALLAADGAYARLWREQNGAEVAA
>NZ_CP013113.1|WP_003121867.1|793851_794901_+|Gfo/Idh/MocA-family-oxidoreductase
MSDVRSVVVAGSRFGQFYAAGVAADPRFVLRGILGQGSRRSRALAERLGVETWCEVEALPDDVRLACVAVGGAARGEQGPALAEALMARGIDVLIEHPLLPREWQDLLRSAERLGRRCLLNTFYPQLPAVARFIELGRQLHHRRGIRHLDAACGVQVGFATLDILAALLEGVGPWSLESPSNDLSAMRGLSLVLAEVPLSLHVLNELAAADDGRMTLLQRVSLTTDRGTLSLLSPHGPLLWTPAVAVPAEDDDGLFALFDEIAGEPLPSAQLWYAEPCSWAQVHQRLWPAAAAEALALLADGDEVRRRNQRSLEVAALWQRIGECLGFPEAPPASLAPASLEQVLEQAS
>NZ_CP013113.1|WP_031687500.1|788425_793855_+|non-ribosomal-peptide-synthetase
MSLGELLETCRSRRIELWSEAGRLRYRAPQGALDAGLAERLRAEREALLEHLEGGPGWRAEPDLAHQRFPLTPVQAAYVLGRQAAFDYGGNACQLYAEYDWPADTDPARLEAAWNAMVERHPMLRAVIEDNAWQRVLPEVPWQRLTVHACAGLDEAAFQAHLERVRERLDHACAALDQWPVLRPELSIGQDACVLHCSVDFTLVDYASLQLLLGEWRRRYLDPQWTAEPLEATFRDYVGVEQRRRQSPAWQRDRDWWLARLDALPGRPDLPLRAQPDTRSTRFRHFHARLDEAAWQALGARAGEHGLSAAGVALAAFAETIGRWSQAPAFCLNLTVLNRPPLHPQLAQVLGDFTALSLLAVDSRHGDSFVERARRIGEQMFDDLDHPTFSGVDLLRELARRRGRGADLMPVVFTSGIGSVQRLLGDGEAPRAPRYMISQTPQVWLDCQVTDQFGGLEIGWDVRLGLFPEGQAEAMFDDFVGLLRRLAQSPRAWTDGDATEPVEAPPQALPSSARSIAAGFAERALLTPDATVIHDAAGSYSYRQVAQHASALRRVLEAHGAGRGRRVAVMLPKSAAQLVAVIGILQAGAAYVPVDIRQPPLRRQAILASAEVVALVCLESDVPDVGCACVAIDRLAADSAWPPPPAAEVAADDLAYVIYTSGSTGTPKGVMLSHAAVSNTLLDINQRYGVDANDRVLGLAELSFDLSVYDFFGATAAGAQVVLPDPARGSDPSHWAELLERHAITLWNSVPAQGQMLIDYLESEPQRHLPGPRCVLWSGDWIPVSLPTRWWRRWPDSALFSLGGATEAAIWSIEQPIRPQHTELASIPYGRALRGQSVEVLDARGRRCPPGVRGEIHIGGVGLALGYAGDPQRTAERFVRHPDGRRLYRTGDLGRYLADGSIEFLGREDDQVKIRGHRIELAELDAALCAHPQVNLAATVVLGETHERSLASFVTLHAPVEAGEDPRTALDAVRQRAAQALRRDWGSEEGIAAAVAALDRACLASLAAWLAGSGLFASATPLDFATLCQRLGIAEARQRLLRHWLRQLEEGGYLRAEGEGWLGCAERPAQSPEDAWTAFAGCAPAALWPAELVAYLRDSAQSLGEQLAGRISPAALMFPQGSARIAEAMYSQGLHAQALHEAMAEAIAAIVERQPQRRWRLLELGAGTAAASRAVIARLAPLVQRGAEVDYLFTDVSSYFLAAARERFADQPWVRFGRFDMNGDLLDQGVAPHSVDILLSSGALNNALDTPALLAGLRELLSADAWLVIQELTREHNEISVSQSLMMENPRDLRDERRQLFVHTGQWLEWLAAQGGDLACGVVPPGSALDLLGYDVLLARCKTDRARLEPAELLAFVEARVPRYMLPAQLRVLERLPVTGNGKIDRKALTGFARQPQADLRHGVAQAPADELENALLALWREVLDNPSLGVEQDFFGAGGDSLLIAQLIARLRERLESARRHPFDRLLRWALSQPTPRGLAERLRSAPEEGRGPALAAARGVAPAQAGMSRAPLAEGAVALDPLVRLVPGEGVPRVLVHEGLGTLLPYRPLLRALGEGRPLLGLAVHDSDAYLAIPAEHLNACLGRRYAEALHGAGLREVDLLGYCSGGLVALETAKSLVQRGVRVRQLDIVSSYRIPYRVDDERLLLFSFAATLGLDTAALGFPAPERLGQAVQAALAQTPERLGAEALAGLPGVADLVALRGRVLQAASGSADAVSVERDTLYRLFCHSVRASQAEAPEPYVGALRLFVPDAGNPLVPRYAEALETQWRAAALGACGIHEVPGGHFDCLGEALAQSLSKPMPEEASR
>NZ_CP013113.1|WP_003121865.1|784112_788429_+|non-ribosomal-peptide-synthetase
MDLPPDSRTALRDWLTEQLADLLGEPLADVRALADDDDLLGCGLDSIRLMYLQERLRARGSTLDFAQLAQRPCLGAWLDLLACADRLSAPATVALPAAQDRDQPFELSSVQQAYWLGRGAGEVLGNVSCHAFLEFRARDVDPQRLAAAAECVRQRHPMLRARFFDGRQQILPTPPLSCFDLQDWRTLQVDEAERDWQALRDWRAHECLAVERGQVFLLGLVRMPGGEDRLWLSLDLLAADVESLRLLLAELGVAYLAPERLAEPPALHFADYLARRAAQRAEAAARARDYWLERLPRLPDAPALPLACAPESIRQPRTRRLAFQLSAGESRRLERLAAQHGVTLSSVFGCTFALVLARWSESAEFLLNVPLFDRHADDPRIGEVIADFTTLLLLECRMQAGVSFAEAVKSFQRNLHGAIDHAAFPALEVLREARRRGQPRSAPVVFASNLGEEGFVPAAFRDAFGDLHDMLSQTPQVWLDHQLYRVGDGILLAWDSVVGLFPEGLPETMFEAYVGLLQRLCDSAWEQPADLPLPWAQQARRALLNGQPACATARTLHRDFFLRAAEAPDADALLYRDQRVTRGELAERALRIAGGLREAGVRPGDAVEVSLPRGPQQVAAVFGVLAAGACYVPLDIDQPPARRRLIEEAAGVCLAITEEDDPQALPPRLDVQRLLRGPALAAPVPLAPQASAYVIYTSGSTGVPKGVEVSHAAAINTIDALLDLLRVDAADRLLAVSALDFDLSVFDLFGGLGAGASLVLPAQEQARDAAAWAEAIQRHAVSLWNSAPALLEMALSLPASQADYRSLRAVLLSGDWVALDLPGRLRPRCAEGCRLHVLGGATEAGIWSNLQSVDTVPPHWRSIPYGRPLPGQAYRVVDAHGRDVPDLVVGELWIGGASLARGYRNDPELSARRFVHDAQGRWYRTGDRGRYWGDGTLEFLGRVDQQVKVRGQRIELGEVEAALCAQAGVESACAAVLGGGVASLGAVLVPRLAPRAEGSMELPAAQPFAGLAEAEAVLTREILGALLEAPLELDDGLRRRWLDWLADSAASALPSLDEALRRLGWQAAGLTAMGNALRGLLAGEQAPAALLLDPWLAPQAVAARLPDGREALARLLEALPTPAAGERLRVAVLDTRAGLWLDQGMASLLRPGLELTLFERSRVLLDAAATRLPERIVVQALDDGLLPAEHLGRYDRVISFAALHAYAASREGLALAAALLRPQGRLLLVDLLCESPLALLGAALLDDRPLRLAELPSLLADLAAAGLAPRCLWRSERLALVEALAPGLGLDAAALQAGLEQRLPQAMRPERLWCLPSLPLNGNGKVDRRRLAESMTRALGECRHEPSAEEPLEAHEQALAECWEAVLKRPVRRREASFFSLGGDSLLATRLLAGIRERFGVRLGMADFYRQPTLAGLARHLQAQTVEIEETQLEEGVL
>NZ_CP013113.1|WP_003112073.1|805246_805891_-|pyridoxamine-5'-phosphate-oxidase
MGVNANISESLTGTIEAPFPEFEAPPANPMEVLRNWLERARRYGVREPRALALATVDGQGRPSTRIVVIAELGERGVVFATHADSQKGRELAQNPWASGVLYWRESSQQIILNGRAERLPDERADAQWLSRPYQTHPMSIASRQSETLADIHALRAEARRLAETDGPLPRPPGYCLFELCLESVEFWGNGTERLHERLRYDRDEGGWKHRYLQP
>NZ_CP013113.1|WP_003117652.1|805916_806753_-|PhzF-family-phenazine-biosynthesis-protein
MHRYVVIDAFASEPLQGNPVAVFFDCDDLSGERMQRMAREMNLSESTFVLRPQQDGDARIRIFTPVNELPFAGHPLLGTAIALGAETDKDRLFLETRMGTVPFALERQDGKVVACSMQQPIPTWEHFSRPAELLAALGLKGSTFPIEVYRNGPRHVFVGLESVAALSALHPDHRALCDFPDLAVNCFAGAGRHWRSRMFSPAYGVVEDAATGSAAGPLAIHLARHRQIPYGQQIEILQGVEIGRPSRMYARAEGAGERVSTVEVSGNGAAFAEGRAYL
>NZ_CP013113.1|WP_003118954.1|806766_808650_-|phenazine-specific-anthranilate-synthase-component-I
MNALPTSLLQRLLERPAPFALLYRPESNGPGLLDVIRGEALELHGLADLPLDEPGPGLPRHDLLALIPYRQIAERGFEALDDGTPLLALKVLEQELLPLEQALALLPNQALELSEEGFDLDDEAYAEVVGRVIADEIGRGEGANFVIKRRFQARIDGYATASALSFFRQLLLREKGAYWTFIVHTGERTLVGASPERHISVRDGLAVMNPISGTYRYPPAGPNLAEVMEFLDNRKEADELYMVVDEELKMMARICEDGGRVLGPYLKEMAHLAHTEYFIEGQTSRDVREVLRETLFAPTVTGSPLESACRVIRRYEPQGRGYYSGVAALIGGDGQGGRTLDSAILIRTAEIEGDGRLRIGVGSTIVRHSDPLGEAAESRAKASGLIAALKSQAPQRLGSHPHVVAALASRNAPIADFWLRGASERQQLQADLSGREVLIVDAEDTFTSMIAKQLKSLGLTVTVRGFQEPYSFDGYDLVIMGPGPGNPTEIGQPKIGHLHLAIRSLLSERRPFLAVCLSHQVLSLCLGLDLQRRQEPNQGVQKQIDLFGAAERVGFYNTFAARALQDRIEIPEVGPIEISRDRETGEVHALRGPRFASMQFHPESVLTREGPRIIADLLRHALVERRP
>NZ_CP013113.1|WP_003122798.1|808646_809270_-|isochorismatase-family-protein
MSGIPEITAYPLPTAQQLPANLARWSLEPRRAVLLVHDMQRYFLRPLPESLRAGLVANAARLRRWCVEQGVQIAYTAQPGSMTEEQRGLLKDFWGPGMRASPADREVVEELSPGPDDWLLTKWRYSAFFHSDLLQRMRAAGRDQLVLCGVYAHVGVLISTVDAYSNDIQPFLVADAIADFSEAHHRMALEYAASRCAMVVTTDEVLE
>NZ_CP013113.1|WP_003122799.1|809266_810484_-|3-deoxy-7-phosphoheptulonate-synthase
MDDLLQRVRRCEALQQPEWGDPSRLRDVQAYLRGSPALIRAGDILALRATLARVARGEALVVQCGDCAEDMDDHHAENVARKAAVLELLAGALRLAGRRPVIRVGRIAGQYAKPRSKPHEQVGEQTLPVYRGDMVNGREAHAEQRRADPQRILKGYAAARNIMRHLGWDAASGQEANASPVWTSHEMLLLDYELSMLREDEQRRVYLGSTHWPWIGERTRQVDGAHVALLAEVLNPVACKVGPEIGRDQLLALCERLDPHREPGRLTLIARMGAQKVGERLPPLVEAVRAAGHPVIWLSDPMHGNTIVAPCGNKTRLVRSIAEEVAAFRLAVSGSGGVAAGLHLETTPDDVTECVADSSGLHQVSRHYTSLCDPRLNPWQALSAVMAWSGAEAIPSATFPLETVA
>NZ_CP013113.1|WP_003123955.1|810519_811008_-|phenazine-biosynthesis-protein
MPDTTNPIGFTDANELREKNRATVEKYMNTKGQDRLRRHELFVEDGCGGLWTTDTGSPIVIRGKDKLAEHAVWSLKCFPDWEWYNINIFGTDDPNHFWVECDGHGKILFPGYPEGYYENHFLHSFELEDGKIKRNREFMNVFQQLRALSIPVPEIKREGIPT
>NZ_CP013113.1|WP_003114729.1|811037_811526_-|phenazine-biosynthesis-protein-phzA-1
MNGQRYRETPLDIERLRRLNRATVERYMAMKGAERLQRHSLFVEDGCAGNWTTESGEPLVFRGHESLRRLAEWLERCFPDWEWHNVRIFETEDPNHFWVECDGRGKALVPGYPQGYCENHYIHSFELENGRIKRNREFMNPIQKLRALGIAVPQIKRDGIPT
>NZ_CP013113.1|WP_003093617.1|812222_813227_+|phenazine-specific-methyltransferase
MNNSNLAAARNLIQVVTGEWKSRCVYVATRLGLADLIESGIDSDETLAAAVGSDAERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLLRDVEGSFRDMVLFYGEEFHAAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLDFRGRSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAARA
>NZ_CP013113.1|WP_003104727.1|813237_814701_-|multidrug-efflux-transporter-outer-membrane-subunit-OpmD
MKRSYPNLSRLALALAVGTGLAACSVGPDYQRPQSPPPRVASEHLGEFSGERREAPWWSFFDDPQLVRLVDQALARNHDIREARANLRSARALFDDRWLDQLPQVTSQAGYSRSIEQQLDYDGEPRRRLAESYRAGFDAQWEIDLFGRLGRLSDAALARAEAADADLRLVRLSIAADTARAYFEIQGYQRRLDVARAQVRSWRDTLELTRSSLQLGSGLPEDVENAQANLLRSEAAIPPLTTALESARYRLDVLRGEAPGSGAPILDGGAAAPLAKNLPLGDVDRLILQRPDVVSAERQLAASTEDVGAATAELYPRLDLGGFIGFFALRSGDLGSASRAFELAPSVSWPAFRLGNVRARLRAVEAQSDAALARYQRSLLLAQEDVGNALNQLAEHQRRLVALFQSATHGANALEIANERYRAGAGSYLAVLENQRALYQIREELAQAETASFVNVIALYKALGWGSGDLAPGAGQLAAGETAGANR
>NZ_CP013113.1|WP_003114727.1|814697_817787_-|MexW/MexI-family-multidrug-efflux-RND-transporter-permease-subunit
MTFTDLFVRRPVLALVVSTLILLLGLFSLGKLPIRQYPLLESSTITVTTEYPGASADLMQGFVTQPIAQAVSSVEGIDYLSSTSVQGRSVVTIRMLLNRDSTQAMTETMAKVNSVRYKLPERAYDSVIERSSGETTAVAYVGFSSKTLPIPALTDYLSRVVEPMFSSIDGVAKVQTFGGQRLAMRLWLDADRLAGRGLTASDVAEAIRRNNYQAAPGMVKGQYVLSNVRVNTDLTNVDDFREMVIRNDGNGLVRLRDVGTVELGAAATETSALMDGDPAVHLGLFPTPTGNPLVIVDGIRKLLPEIQKTLPPDVRVDLAYETSRFIQASIDEVVRTLVEALLIVVLVIYLCLGSLRSVLIPVATIPLSMLGAAALMLAFGFSVNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPVAAALIGAREVAGPVIAMTITLAAVYTPIGLMGGLTGALFREFALTLAGAVIVSGVVALTLSPVMSSLLLQAHQNEGRMGRAAEWFFGGLTRRYGQVLEFSLGHRWLTGGLALLVCISLPLLYSMPKRELAPTEDQAAVLTAIKAPQHANLDYVELFARKLDQVYTSIPETVSTWIINGTDGPAASFGGINLAAWEKRERDASAIQSELQGKVGDVEGSSIFAFQLAALPGSTGGLPVQMVLRSPQDYPVLYRTMEEIKQKARQSGLFVVVDSDLDYNNPVVQVRIDRAKANSLGIRMQDIGESLAVLVGENYVNRFGMEGRSYDVIPQSLRDQRFTPQALARQFVRTQDGNLVPLSTVVRVALQVEPNKLIQFDQQNAATLQAIPAPGVSMGQAVAFLDDVARGLPAGFSHDWQSDSRQYTQEGNTLVFAFLAALVVIYLVLAAQYESLADPLIILITVPLSICGALLPLALGYATMNIYTQIGLVTLIGLISKHGILMVEFANELQLHERLDRRAAILRAAQIRLRPVLMTTAAMVFGLVPLLFASGAGAASRFGLGVVIVSGMLVGTLFTLFVLPTVYTLLARNHAEVDKSPRSRQLAEADLLVNKA

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Crispr_ID: NZ_CP013113_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013113_3

1897734-1897835

Orphan

Consensus_repeat	Method
GCGGCGGGTATCGGCGGATAACGCC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP013113_3

>merge|NZ_CP013113|3|1897734-1897835|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCCTCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTGCGGCGGGGTATCGGCGGATAACGCC

>NZ_CP013113|3|3|1897734-1897835|CRISPRCasFinder
GCGGCGGGTATCGGCGGATAACGCC	TCCGGCGTTATTCGCCCTACGCGGAGGGTTCCCAGCTTTCGCTCCGCCGTTG
CGGCGGGGTATCGGCGGATAACGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013113.1\|WP_003114812.1\|1901570_1902134_-\|peptidylprolyl-isomerase-A	unknown	unknown	gnl\|CDD\|182824
NZ_CP013113.1\|WP_003091534.1\|1902949_1903879_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP013113.1\|WP_003109191.1\|1906197_1906533_-\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_CP013113.1\|WP_003116397.1\|1887957_1888815_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP013113.1\|WP_003116401.1\|1905288_1906188_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP013113.1\|WP_003114810.1\|1896704_1897331_+\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236391
NZ_CP013113.1\|WP_003122236.1\|1888954_1889758_-\|VacJ-family-lipoprotein	unknown	unknown	gnl\|CDD\|225409
NZ_CP013113.1\|WP_003091540.1\|1899127_1899394_-\|DUF2790-domain-containing-protein	unknown	unknown	gnl\|CDD\|371321
NZ_CP013113.1\|WP_003091547.1\|1892855_1893167_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP013113.1\|WP_003114814.1\|1904542_1905184_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_CP013113.1\|WP_003114813.1\|1902115_1902943_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|131480
NZ_CP013113.1\|WP_003114807.1\|1889761_1891123_-\|alpha/beta-fold-hydrolase	unknown	unknown	unknown
NZ_CP013113.1\|WP_003114811.1\|1897970_1899095_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|225688
NZ_CP013113.1\|WP_003091533.1\|1904078_1904396_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013113.1\|WP_003116398.1\|1894908_1896708_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP013113.1\|WP_003109182.1\|1897439_1897598_+\|DUF3309-domain-containing-protein	unknown	unknown	gnl\|CDD\|378708
NZ_CP013113.1\|WP_003091546.1\|1893163_1894819_+\|cation-acetate-symporter	unknown	unknown	gnl\|CDD\|236495
NZ_CP013113.1\|WP_003109184.1\|1899675_1901508_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP013113.1\|WP_003091551.1\|1891265_1891487_-\|DUF2061-domain-containing-protein	unknown	unknown	gnl\|CDD\|225746
NZ_CP013113.1\|WP_003122237.1\|1891780_1892638_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357

Protein	Function_ID	Function_description	E-value
NZ_CP013113.1\|WP_003114812.1\|1901570_1902134_-\|peptidylprolyl-isomerase-A	gnl\|CDD\|182824	PRK10903, PRK10903, peptidylprolyl isomerase A.	5.29669e-93
NZ_CP013113.1\|WP_003091534.1\|1902949_1903879_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.24343e-39
NZ_CP013113.1\|WP_003109191.1\|1906197_1906533_-\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.70058e-64
NZ_CP013113.1\|WP_003116397.1\|1887957_1888815_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.4231e-96
NZ_CP013113.1\|WP_003116401.1\|1905288_1906188_-\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	1.27099e-12
NZ_CP013113.1\|WP_003114810.1\|1896704_1897331_+\|3'-5'-exonuclease	gnl\|CDD\|236391	PRK09145, PRK09145, 3'-5' exonuclease.	2.00701e-94
NZ_CP013113.1\|WP_003122236.1\|1888954_1889758_-\|VacJ-family-lipoprotein	gnl\|CDD\|225409	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane].	5.4671e-101
NZ_CP013113.1\|WP_003091547.1\|1892855_1893167_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.28294e-48
NZ_CP013113.1\|WP_003114814.1\|1904542_1905184_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	1.18979e-103
NZ_CP013113.1\|WP_003114813.1\|1902115_1902943_-\|alpha/beta-hydrolase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	9.99012e-42
NZ_CP013113.1\|WP_003091540.1\|1899127_1899394_-\|DUF2790-domain-containing-protein	gnl\|CDD\|371321	pfam10976, DUF2790, Protein of unknown function (DUF2790). This family of proteins with unknown function appear to be restricted to Pseudomonadaceae.	1.53651e-35
NZ_CP013113.1\|WP_003114811.1\|1897970_1899095_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|225688	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP013113.1\|WP_003116398.1\|1894908_1896708_+\|cyclic-nucleotide-binding/CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	0
NZ_CP013113.1\|WP_003109182.1\|1897439_1897598_+\|DUF3309-domain-containing-protein	gnl\|CDD\|378708	pfam11752, DUF3309, Protein of unknown function (DUF3309). This family is conserved in bacteria but its function is not known.	2.8739e-06
NZ_CP013113.1\|WP_003091546.1\|1893163_1894819_+\|cation-acetate-symporter	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP013113.1\|WP_003109184.1\|1899675_1901508_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	3.066e-156
NZ_CP013113.1\|WP_003091551.1\|1891265_1891487_-\|DUF2061-domain-containing-protein	gnl\|CDD\|225746	COG3205, COG3205, Predicted membrane protein [Function unknown].	8.76037e-33
NZ_CP013113.1\|WP_003122237.1\|1891780_1892638_+\|glycine-betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.83762e-116

>NZ_CP013113.1|WP_003109182.1|1897439_1897598_+|DUF3309-domain-containing-protein
MSLGTILLIILILLLIGGLPVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI
>NZ_CP013113.1|WP_003114810.1|1896704_1897331_+|3'-5'-exonuclease
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSLDAESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRPLLGYYLSFDVAVLNRHLRQLLDRQLHNPSIEISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH
>NZ_CP013113.1|WP_003116398.1|1894908_1896708_+|cyclic-nucleotide-binding/CBS-domain-containing-protein
MPDSFNFASPPFDQLRPHQRETLKQALSVGYYAPGETLLEAGSAVPGLFVLLKGVVEERGDDGRVFAQYAADDLFDVRGLFSGSSKHRYLAIEESIVYELPASCFHQLCGENPGFARFFQADLAAKRQLAQRDGQNLAEFILTRIAREHLLPALEVEASLSLGDAARLQLSHGADALLVRLERDGPELGIVTRTDLMSAHFRDGRSELEAIGPLAHGPLASVELGDFLFDAMILMTRQRIERVAVTEDGQVIGLLHLTQVLSLFSTHSHVLALRIARADDLGDLRRCAETLDTLIATLAGNGIRLRFIMQLVSALNEQLLERLFELLLPPTLRGRCCLLVMGSEGRGEQLLKTDQDNALVLADDLPQEQALAMMQRFSAALLEFGYPPCPGGVMASRPEWCKPLAAWQAELRGTLLEGKPEQLLRLSILADAWPVAGNLQLFEPLRRQLRGFADGGERWLADIAAAALQFDTPLTFLGQLKTQDARLDLKRGGIFPIVHGIRTLALREGLETRGTLARIEALKRHKVLEARLADDLSESFELFLQLRLTRQLAGQRDGRQQGLDVSGMSRHDRDMLRYGLHVVKKFKQSVARQFHLETR
>NZ_CP013113.1|WP_003091546.1|1893163_1894819_+|cation-acetate-symporter
MIARLLAALGLAAFAPALWADALTGDVQRQPLNVSAIVMFVAFVGATLCITYWASKRNRSAADYYAAGGRITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQKQIRTLSACGSLVVVAFYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVLYVLFGGMLATTWVQIIKAVLLLSGASFMAIMVLKHVNFDVSTLFSEAIKVHPKGEAIMSPGGLVKDPISAFSLGFALMFGTAGLPHILMRFFTVSDAKEARKSVFYATGFIGYFYILTFIIGFGAILLVSTNPDFKDATGALIGGNNMAAVHLADAVGGSLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYASVFKGGKANEKDELRVSKMTTVALGVVAIVLGILFEKQNIAFMVGLAFSIAASCNFPVLLLSMYWKKLTTRGAMIGGWMGLITAVGLMVLGPTIWVQILGHEKAIYPYEYPALFSMIVAFVGIWFFSITDKSAAADEERARFFPQFIRSQTGLGASGAVAH
>NZ_CP013113.1|WP_003091547.1|1892855_1893167_+|DUF485-domain-containing-protein
MNDSIYQRIDTNPRFKELVAKRERFAWILSSIMLGLYVIFILLIAFQPQLLGARISPDSSVTWGIPMGVGLILAAFILTGLYVRRANGEFDSLNQEILKEAQQ
>NZ_CP013113.1|WP_003122237.1|1891780_1892638_+|glycine-betaine-ABC-transporter-substrate-binding-protein
MRMMRRLLCWSAGLAMSAAVGMAAAADKPVITIGYVDGWSDSVATTHVAAEVIREKLGYEVKLMPVAAGIMWQGVARGKLDAMLSAWLPGTHGAYYEKMKDKVVNLAINYPDARIGLIVPEYVSANGIADLQAQKDAFGGRVVGIDAGAGVMIKTDEAIKQYGLDYKLVASSGSGMIAELTRAENEKKPVVVTGWIPHWMFAKWKLKFLDDPKKVYGDTEHVDTVANPALEAKAKPVWEFLKKFGWRDGNEVGQVMLAIQEGAKPEDAAKQWVAANPGRVKDWVQ
>NZ_CP013113.1|WP_003091551.1|1891265_1891487_-|DUF2061-domain-containing-protein
MLKTLTFTVMHFIIAFSVAYALTGSIAVGGLVAAVEPLCNSVGFYFHEKIWKRFEKDGAPRPASAHGWLHRHA
>NZ_CP013113.1|WP_003114807.1|1889761_1891123_-|alpha/beta-fold-hydrolase
MPHFLRFAALLGGLALGCANLAQARDVDAASYGYPLTNPFEATIATTPPELRPELPHSEDIDQKDYSLKLRPEREFALPDNFWPVKKLRYRLARQDHAAPLIFIIAGTGAHYASSFPEYLKKLFYQAGYHVVQLSSPTSWDFMASASRFATPGFSSDDADDLYRVMQAVRAQQRDLPVTDYYLTGYSLGALNAAFVSHLDESRRSFNFKKVLLLNPPVNLYTSVSNLDKLVETQVKGITDSRTFYEVVLSKLTRYFRQKGYVDINDAMLYDFQQSKQRLSNEEMAMLIGTSFRFSAADIAFTSDLVNRRGLITPPNYPINEGTSLEPFFKRALQCDFECYMTEQLIPMWRARYDGGSLTQLVNQVSLYKLQDYLHDSPKIAVMHNADDVILGPGDLGFLRRTFGERLTVYPYGGHCGNLNYKVNAQDMLDFFATPAAGQTQVASAALTQQAGN
>NZ_CP013113.1|WP_003122236.1|1888954_1889758_-|VacJ-family-lipoprotein
MSRTAHWMFALLLSAAASAQADQAAAPAELPPRKLDGDGFSRPLDQLKFNPGLDQREFERATLDALNMYDPWESWNRRVYHFNYRFDEWVFLPVVRGYEYVTPHFVRSGVSNFFDNLGDVPNLLNNLAQLKGKAAMETTARLLFNTTFGVLGLWDPATRMGLHKRSEDFGQTLGFYGVGSGPYLVLPILGPSNLRDTGGLVVDYVGEYQVNYLNVPQASGDHPEITALRVVDKRYNTSFRYGQMNSPFEYEKLRYIYTEARKLQIAE
>NZ_CP013113.1|WP_003116397.1|1887957_1888815_-|pirin-family-protein
MTRYRDVLELHTGHPASDGAGVRLTRVIGGPSPERFDPFLMLDQFDTQNPDDYVAGFPSHPHRGFETVTYMLEGRMRHEDHLGNRGLLKPGGVQWMTAAHGIIHSEMPEQVEGAMRGFQLWVNLPAKNKLAPAGYRDIEPEDVPRLETAGGVKVTVIAGRFDDGQAQQIGAVERPDTEPHYYDLQLPAGGRIAPRLPDGHRVLLYVYEGSLTVEGERPVEIATNRLARLSEEGELSLRSEAGARVLVLAGKPLREPIVQYGPFVMNSREEIEQALRDYRDGVLAV
>NZ_CP013113.1|WP_003114811.1|1897970_1899095_+|GNAT-family-N-acetyltransferase
MPIQTLATLADIDAAEWDALLPPAQPFLRHAFLSALEDSHSVTPATGWRPAHRVLRDPQGRLCAALPAYVKAHSYGEYVFDWSWADACQRAGIRYYPKLLVGVPFTPVAGARLLGEDEGLQGLLASLGEEAEASGLSSIHVNFTDARADTLLAARDGWLERLGCQYHWHNRGYRDFQDFLEALSSRKRKQLRKEREQVGGQGIEFEWREGGQLSELEWDFVYLCYANTYLVRDRDPYLSREFFGLLAERMPEAIRVVFAHQRGKPVAMAFSLVAGDTLYGRYWGCLAEFDRLHFETCFYQGLEFAIGAGLARFDAGAQGEHKLIRGFEPVLTRSWHYLAHPGLRDAVAQFLEQERAGVRAYAEEAHGLLPYRQA
>NZ_CP013113.1|WP_003091540.1|1899127_1899394_-|DUF2790-domain-containing-protein
MKLASVVSAVITSLAPMAFAQDVDKDPGRGLPVEEYHYGMQLDVKNVLHRTDNSTRTGVVPVTVVYEDHSGELHKIRFLEWGGSTSNG
>NZ_CP013113.1|WP_003109184.1|1899675_1901508_-|ABC-transporter-ATP-binding-protein
MLYRRFERLIDPFRSASERMPPSEVLRFYVYFLRQVWPVFLALLVVGLIVALIEVALFSYLGRIVDLAQSTPSAEFFRVHANELIWMAVVALVLRPLFNALHDMLVHQSINPSMTNLIRWQNHRYVLKQSLGFFQNDFAGRIAQRIMQTGNSLRDSAVQVVDALWHVLIYTVSALVLFAEADWRLMIPLVLWVFAYVGALAYFVPQVKRRSVEASDSRSKLMGRIVDGYTNITTLKLFAHTRQEEDYAREAIGDQTLKSQRAGRVVTSMDVTITVMNGVLITGTTGLALWLWSQELISVGAIALATGLVIRINNMSGWIMWVVGGIFENIGQVQDGMQTIALPRKVVDREDAQPLRVERGEVEFEHIAFHYGKGSGVIQGLDLKVRPGEKIGLVGPSGAGKSTLVNLLLRLYDLESGRILVDGQDIAGVTQESLRAQIGMVTQDTSLLHRSIRDNLLYGRPGASDAELMEAVRKARADEFIPLLSDAEGRRGFDAHVGERGVKLSGGQRQRIAIARVLLKDAPILILDEATSALDSEVESAIQESLETLMQGKTVIAIAHRLSTIARMDRLVVLDKGHIAESGTHAELLAHGGLYARLWQHQTGGFVGVD
>NZ_CP013113.1|WP_003114812.1|1901570_1902134_-|peptidylprolyl-isomerase-A
MLKRLLIAACTLLFAGSLLAATPAAKPHVLIATSLGEIEVELDPAKAPISVKNFLEYVDSGYYDGTLFHRVIPGFMVQTGGFSAGMQEKKTRAPIKNEADNGLLNERGTLAMARTGVVDSATSQFFINLTDNDFLNHGARDFGYAVFGKVVRGMGVVDQIAKVPTTRRNGFADVPSDDVVILSAKRL
>NZ_CP013113.1|WP_003114813.1|1902115_1902943_-|alpha/beta-hydrolase
MPDFQHRDCTLVYDDHPGPTERAPVLLLHGLGSSARDWEYQLPALLGRYRLLVPDLRGHGRSGKPRGGYSMAGFAEDCAALLDRLGCGPVHLVGISMGGMIGFQLACDRPDLLRSLTIVNSTPEVIPRKPREHLEVAKRKLLSRLLSLRTIGRALGRLLFPKAEQAGLREKIEARWAENDKRAYLASLDAIIGWGVQERLAEIACPTLVISADRDYTPVSLKQAYCERIADARLVVVEDSRHATPMDQPEIFNTTLLGFLADIDKTKEQPCSNVS
>NZ_CP013113.1|WP_003091534.1|1902949_1903879_-|LysR-family-transcriptional-regulator
MKAPRVTLDQWRTLQAVVDHGGFAQAAEALHRSQSSISYTVARMQEQLGVPLLRIDGRKAVLTEAGEVLLRRSRQLVKQAGQLEELAHHMEQGWEPEVRLVVDAAYPTARIVRSLSAFMPQSRGCRVLLREEVLSGVEEALIQGAADLAISGLIIPGHLGADLSVVEFVAVAHPDHPLHRLQRELTHQDLETQMQVVIRDSGRLQPRDHGWLGAEQRWTVGSLATAATFVGNGLGFAWLPRHIIERELQSGQLKPLPLSQGGVRQSRFYLYTNKEKPLGPASQILMEMLKSFANVPLNAPFAAPEPAAE
>NZ_CP013113.1|WP_003091533.1|1904078_1904396_+|hypothetical-protein
MKRLCCFALSLLPLSAFAYPIEVDPQLNGTEVSYSTQDIGRDMGAILLTNLGGQAAECTAVFRNGPETPKVRKGVIQPGQNSNFTAQFGRDIIKLRIKLTCKIAK
>NZ_CP013113.1|WP_003114814.1|1904542_1905184_+|FMN-dependent-NADH-azoreductase
MSRVLVIESSARQRGSVSRLLTAEFISHWKIAHPADRFQVRDLAREPLPHLDELLLGAWTTPCDGHSAAERRALERSNRLTEELRMADVLVLAAPMYNFAIPSSLKSWFDHVLRAGLTFRYAEQGPEGLLQGKRAFVLTARGGIYAGGGLDHQEPYLRQVLGFVGIHDVTFIHAEGMNMGPEFREKGLARARERMRQALETDTSLCVPLPTLR
>NZ_CP013113.1|WP_003116401.1|1905288_1906188_-|DMT-family-transporter
MNRRSALAALHGGALLFGLTGVFGKLASASPGVIVFGRALFAVLALGLFARLAGQAWRALGPAQWLRLALCGLLLAGHWVSFFIAVKTAGVAIATLGFASFPAFTVILEGLLFRERIHLAEGLLVVLVSLGLVLVTPNFDLASGATLGLLWAILSGLLFALLSLANRSNSGQVGPVQAALWQNLVVALCLLPFAVGELPALPALDWLWLALLGVFCTGLAHSLFVASLAVVKARTAALVFALEPVYGIAFAWLLFHETPGPRMFLGGALIILAIVLSARLGARGRKTAVGDERGDPERA
>NZ_CP013113.1|WP_003109191.1|1906197_1906533_-|tRNA-binding-protein
MDIIEWQDFERVELRVGTILSAAPNPKARKPAYVLEVDLGPLGLRTSSAQLTAHYQAEQLVGRQVLCVCNFAPKQIAGVRSEVLVTGVYDSEDKVVLAGFDKPLPNGARLA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013113_2	2.1\|805156\|58\|NZ_CP013113\|CRISPRCasFinder	805156-805213	58	NZ_CP013113.1	3632370-3632427	2	0.966
NZ_CP013113_2	2.1\|805156\|58\|NZ_CP013113\|CRISPRCasFinder	805156-805213	58	NZ_CP013113.1	3632514-3632571	2	0.966

1. spacer 2.1|805156|58|NZ_CP013113|CRISPRCasFinder matches to position: 3632370-3632427, mismatch: 2, identity: 0.966

cggataacgccggtggcgttattcgccctacggcccgactacggggccgcgggacgca	CRISPR spacer
cggataacgccggtggcgttatccgccctacggcccgactccggggccgcgggacgca	Protospacer
**********************.***************** *****************

2. spacer 2.1|805156|58|NZ_CP013113|CRISPRCasFinder matches to position: 3632514-3632571, mismatch: 2, identity: 0.966

cggataacgccggtggcgttattcgccctacggcccgactacggggccgcgggacgca	CRISPR spacer
cggataacgccggtggcgttatccgccctacggcccgactccggggccgcgggacgca	Protospacer
**********************.***************** *****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013113_3	3.1\|1897759\|52\|NZ_CP013113\|CRISPRCasFinder	1897759-1897810	52	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	63791-63842	0	1.0

1. spacer 3.1|1897759|52|NZ_CP013113|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 0, identity: 1.0

tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	CRISPR spacer
tccggcgttattcgccctacgcggagggttcccagctttcgctccgccgttg	Protospacer
****************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

652497 : 715362

Pseudomonas_phage(23.33%)

tail,tRNA,integrase,plate

attL 644303:644319|attR 716656:716672

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
644303:644319	attL	NA	NA	NA	NA
WP_003121829.1\|652497_653571_-\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	3.2e-47	38.9
WP_031687214.1\|653791_657529_-	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	4.8e-13	35.4
WP_003085035.1\|657635_659489_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.2e-36	33.8
WP_003121834.1\|659568_661563_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.8e-73	40.7
WP_003085042.1\|661645_662095_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	5.0e-18	38.8
WP_003085057.1\|662164_662380_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_003099590.1\|662580_663606_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.4e-108	58.1
WP_003085061.1\|663684_664254_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|664337_664691_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003099585.1\|664681_665224_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003121835.1\|665196_666429_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	2.6e-77	43.1
WP_003085071.1\|666472_666979_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|667072_668626_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|668622_669894_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|669994_671917_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003099577.1\|672195_672528_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003121837.1\|672571_673423_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003121838.1\|673422_673803_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003121839.1\|673839_674646_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003085089.1\|674761_675748_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003109024.1\|675744_677037_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_029610110.1\|677017_679810_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_003099554.1\|679936_680953_+	phosphotransferase	NA	NA	NA	NA
WP_003099549.1\|680949_681624_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_003099547.1\|681625_682384_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_003099546.1\|682384_683446_-	DUF3530 family protein	NA	NA	NA	NA
WP_003142788.1\|683597_685991_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003099542.1\|686039_686669_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|686797_687832_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_003085109.1\|688065_689175_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|689230_690277_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003113206.1\|690391_691639_+	ABC transporter permease	NA	NA	NA	NA
WP_003099535.1\|691744_692575_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|692698_693373_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003099532.1\|693372_694191_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003085126.1\|694263_695742_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003121843.1\|696058_696373_-	transcriptional regulator	NA	NA	NA	NA
WP_003113202.1\|696472_697243_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_003085132.1\|697700_697901_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003118907.1\|697948_698308_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|698670_699120_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003101620.1\|699141_699657_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	1.8e-32	43.4
WP_003121844.1\|699653_700211_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	6.0e-45	70.3
WP_003121845.1\|700363_700690_+	hypothetical protein	A0A2H4JA09	uncultured_Caudovirales_phage	9.2e-30	59.3
WP_003161928.1\|700686_701574_+	bacteriophage protein	S4TNY7	Salmonella_phage	4.1e-88	59.8
WP_003118911.1\|701566_702100_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.9e-62	64.6
WP_003161927.1\|702101_704207_+\|tail	phage tail fiber protein	Q9ZXK6	Pseudomonas_virus	3.0e-222	52.7
WP_016852415.1\|704214_704655_+	hypothetical protein	NA	NA	NA	NA
WP_003121848.1\|704697_705858_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	1.2e-188	83.4
WP_003085175.1\|705870_706374_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003085178.1\|706388_706733_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_031638514.1\|706902_709140_+\|tail	phage tail length tape measure protein	NA	NA	NA	NA
WP_003121850.1\|709149_710022_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	4.6e-76	52.1
WP_003101635.1\|709996_710203_+	hypothetical protein	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003121851.1\|710260_711250_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	1.7e-106	55.8
WP_003113192.1\|711282_711912_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.6e-86	78.0
WP_003121852.1\|711908_712271_+	hypothetical protein	H2BDA0	Pseudomonas_phage	4.2e-15	47.9
WP_003118919.1\|712267_712525_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003101640.1\|712872_713478_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.0e-75	65.8
WP_003085203.1\|713479_714529_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003085205.1\|714525_715362_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9
716656:716672	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1472286 : 1481314

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003098558.1\|1472286_1472922_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3
WP_003115226.1\|1472967_1473861_+	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003113871.1\|1473965_1474970_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003092272.1\|1475395_1475719_-	ferredoxin family protein	NA	NA	NA	NA
WP_003122151.1\|1475785_1478353_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	2.4e-24	22.1
WP_003098486.1\|1478478_1479486_-	TolB family protein	NA	NA	NA	NA
WP_003092262.1\|1479633_1480140_+	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003092260.1\|1480273_1481314_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5

DBSCAN-SWA_3

2551909 : 2611236

Pseudomonas_virus(68.75%)

capsid,tRNA,portal,plate,terminase,head,holin,tail,protease,integrase,lysis

attL 2575412:2575441|attR 2612224:2612253

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003119971.1\|2551909_2553037_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_003097654.1\|2553080_2553551_-	NUDIX hydrolase	NA	NA	NA	NA
WP_003122606.1\|2553637_2555863_-	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA
WP_003090436.1\|2556221_2557478_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.1e-17	81.5
WP_003090435.1\|2557550_2557823_-	cold shock domain-containing protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-15	58.8
WP_003097649.1\|2558048_2558417_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.9e-11	41.6
WP_003090432.1\|2558444_2560721_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.4e-163	42.8
WP_002553999.1\|2560802_2561021_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_003097644.1\|2561125_2561833_-	arginyltransferase	NA	NA	NA	NA
WP_003108768.1\|2561887_2562568_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_003122607.1\|2562604_2563555_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.2e-61	43.0
WP_003119977.1\|2563782_2566218_+	DNA translocase FtsK	G1D482	Mycobacterium_virus	1.9e-87	52.8
WP_003090414.1\|2566243_2566870_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_003097632.1\|2566879_2568205_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.2e-80	39.2
WP_003097631.1\|2568326_2569607_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4
WP_003113366.1\|2569608_2571006_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003097628.1\|2571010_2571985_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003108776.1\|2572072_2573056_-	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
WP_003090393.1\|2573052_2573388_-	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.3e-38	69.4
WP_003090391.1\|2573384_2573690_-	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090389.1\|2573689_2574049_-	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090387.1\|2574045_2574441_-	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090386.1\|2574550_2575219_-	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
2575412:2575441	attL	NA	NA	NA	NA
WP_039843340.1\|2575559_2576729_-\|integrase	site-specific integrase	A0A2H4JGM5	uncultured_Caudovirales_phage	2.6e-151	65.8
WP_071659023.1\|2576949_2578860_-	DNA cytosine methyltransferase	A0A0U1T6D1	Pseudomonas_phage	1.1e-279	91.3
WP_034086370.1\|2579163_2579370_-	TraR/DksA family transcriptional regulator	Q9ZXI6	Pseudomonas_virus	1.6e-32	98.5
WP_023089226.1\|2579381_2579735_-	hypothetical protein	Q9ZXI7	Pseudomonas_virus	2.4e-60	97.4
WP_071659024.1\|2579779_2582500_-	bifunctional DNA primase/helicase	Q9ZXI8	Pseudomonas_virus	0.0e+00	97.0
WP_003098410.1\|2582496_2582730_-	hypothetical protein	Q9ZXI9	Pseudomonas_virus	7.8e-39	100.0
WP_039843298.1\|2582801_2583152_-	hypothetical protein	NA	NA	NA	NA
WP_034063875.1\|2583148_2583442_-	ogr/Delta-like zinc finger family protein	Q9ZXJ1	Pseudomonas_virus	9.4e-50	96.9
WP_033936176.1\|2583438_2583876_-	hypothetical protein	Q9ZXJ2	Pseudomonas_virus	1.0e-68	91.7
WP_079396003.1\|2584195_2584666_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_039843297.1\|2584702_2585170_+	hypothetical protein	NA	NA	NA	NA
WP_126566000.1\|2585315_2585723_+	hypothetical protein	NA	NA	NA	NA
WP_126565998.1\|2585939_2586806_+	hypothetical protein	NA	NA	NA	NA
WP_126453141.1\|2586798_2587395_+	hypothetical protein	NA	NA	NA	NA
WP_139148416.1\|2587488_2588052_-	hypothetical protein	NA	NA	NA	NA
WP_039843294.1\|2588175_2589447_-	phage late control D family protein	Q9ZXJ8	Pseudomonas_virus	3.0e-233	97.6
WP_015967206.1\|2589443_2589884_-\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	6.1e-77	100.0
WP_071659025.1\|2589889_2592649_-\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	0.0e+00	94.7
WP_003098394.1\|2592638_2592758_-\|tail	GpE family phage tail protein	Q9ZXK1	Pseudomonas_virus	1.8e-15	100.0
WP_023093078.1\|2592766_2593105_-\|tail	phage tail assembly protein	Q9ZXK2	Pseudomonas_virus	2.3e-39	84.3
WP_071659026.1\|2593158_2593674_-\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	4.2e-93	98.8
WP_039843305.1\|2593730_2594906_-\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	3.6e-217	97.2
WP_023876125.1\|2594996_2595458_-\|tail	tail fiber assembly protein	Q9ZXK5	Pseudomonas_virus	8.5e-37	53.9
WP_039843304.1\|2595509_2597900_-\|tail	phage tail fiber protein	Q9ZXK6	Pseudomonas_virus	0.0e+00	88.6
WP_015967199.1\|2597901_2598438_-\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	1.4e-99	100.0
WP_071659027.1\|2598437_2599352_-\|plate	baseplate assembly protein	Q9ZXK8	Pseudomonas_virus	1.0e-163	98.4
WP_033942401.1\|2599348_2599693_-\|plate	baseplate assembly protein	Q9ZXK9	Pseudomonas_virus	2.3e-55	96.5
WP_048521465.1\|2599689_2600262_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	3.0e-92	98.4
WP_153274382.1\|2600439_2600868_+	hypothetical protein	NA	NA	NA	NA
WP_039843367.1\|2600877_2601336_-	phage virion morphogenesis protein	Q9ZXL2	Pseudomonas_virus	3.2e-68	88.7
WP_016852031.1\|2601328_2601865_-\|tail	phage tail protein	Q9ZXL3	Pseudomonas_virus	7.9e-95	98.9
WP_039843366.1\|2601942_2602404_-\|lysis	LysB family phage lysis regulatory protein	Q9ZXL5	Pseudomonas_virus	2.4e-71	97.4
WP_039843365.1\|2602400_2603207_-	DUF3380 domain-containing protein	Q9ZXL6	Pseudomonas_virus	4.2e-148	97.4
WP_016852027.1\|2603203_2603476_-\|holin	phage holin family protein	Q9ZXL7	Pseudomonas_virus	1.2e-38	98.9
WP_003098379.1\|2603477_2603831_-	hypothetical protein	Q9ZXL8	Pseudomonas_virus	6.0e-59	100.0
WP_039843364.1\|2603855_2604068_-\|tail	tail protein X	Q9ZXL9	Pseudomonas_virus	1.4e-31	92.6
WP_071659028.1\|2604067_2604529_-\|head	head completion/stabilization protein	Q9ZXM1	Pseudomonas_virus	3.6e-80	99.3
WP_071659029.1\|2604632_2605334_-\|terminase	terminase endonuclease subunit	Q9ZXM2	Pseudomonas_virus	8.1e-124	98.7
WP_071659030.1\|2605339_2606356_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	5.0e-191	99.1
WP_015967183.1\|2606391_2607213_-\|capsid	GPO family capsid scaffolding protein	Q9ZXM4	Pseudomonas_virus	8.9e-130	100.0
WP_071659049.1\|2607368_2609132_+\|terminase	terminase ATPase subunit family protein	Q9ZXM5	Pseudomonas_virus	0.0e+00	99.7
WP_015967181.1\|2609128_2610181_+\|portal	phage portal protein	Q9ZXM6	Pseudomonas_virus	2.7e-203	100.0
WP_039843228.1\|2610375_2611236_-	ETX/MTX2 family pore-forming toxin	Q787C9	Pseudomonas_virus	1.3e-163	99.7
2612224:2612253	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4410430 : 4419268

Pseudomonas_phage(91.67%)

capsid,tRNA,integrase

attL 4408649:4408665|attR 4415256:4415272

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4408649:4408665	attL	NA	NA	NA	NA
WP_003082462.1\|4410430_4411255_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.4e-106	73.7
WP_023088456.1\|4411360_4412377_-\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	1.9e-190	99.4
WP_023090584.1\|4412376_4413669_-	hypothetical protein	Q56VN8	Pseudomonas_phage	2.6e-253	96.8
WP_023127904.1\|4413897_4415172_-	hypothetical protein	Q56VN9	Pseudomonas_phage	6.1e-202	88.7
WP_003114150.1\|4415175_4415532_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	7.9e-59	100.0
4415256:4415272	attR	NA	NA	NA	NA
WP_048521242.1\|4415536_4416811_-	hypothetical protein	Q56VP1	Pseudomonas_phage	1.9e-54	57.7
WP_023127902.1\|4416958_4417207_-\|capsid	phage capsid protein	Q56VP2	Pseudomonas_phage	1.3e-31	91.5
WP_023127901.1\|4417219_4417471_-	hypothetical protein	NA	NA	NA	NA
WP_023127900.1\|4417483_4417576_-	hypothetical protein	Q56VP4	Pseudomonas_phage	1.2e-08	96.7
WP_023127899.1\|4417592_4418027_-	hypothetical protein	Q56VP5	Pseudomonas_phage	6.5e-63	95.8
WP_052156582.1\|4418161_4418539_-	hypothetical protein	Q56VP6	Pseudomonas_phage	4.8e-62	99.2
WP_034056811.1\|4418542_4418830_-	DUF5447 family protein	Q56VP7	Pseudomonas_phage	2.0e-52	95.7
WP_033863618.1\|4418828_4419047_+	hypothetical protein	NA	NA	NA	NA
WP_022581007.1\|4419052_4419268_-	DNA-binding protein	Q56VP9	Pseudomonas_phage	1.4e-34	93.0

DBSCAN-SWA_5

4920681 : 4927943

Pseudomonas_phage(100.0%)

integrase

attL 4919710:4919737|attR 4932989:4933016

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4919710:4919737	attL	NA	NA	NA	NA
WP_031672657.1\|4920681_4921665_-\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	4.7e-93	52.0
WP_071659043.1\|4921664_4922957_-	hypothetical protein	Q56VN8	Pseudomonas_phage	1.4e-246	93.8
WP_049290957.1\|4923215_4924478_-	hypothetical protein	Q56VN9	Pseudomonas_phage	1.0e-116	55.2
WP_003159569.1\|4924479_4924830_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	5.5e-20	41.1
WP_003163344.1\|4924839_4925448_-	hypothetical protein	NA	NA	NA	NA
WP_003124953.1\|4926102_4926321_-	hypothetical protein	NA	NA	NA	NA
WP_003115130.1\|4926596_4926689_-	hypothetical protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
WP_003140508.1\|4926705_4927140_-	hypothetical protein	Q56VP5	Pseudomonas_phage	3.8e-63	100.0
WP_058129070.1\|4927274_4927652_-	hypothetical protein	Q56VP6	Pseudomonas_phage	4.4e-60	97.6
WP_042929587.1\|4927655_4927943_-	DUF5447 family protein	Q56VP7	Pseudomonas_phage	2.0e-52	94.7
4932989:4933016	attR	NA	NA	NA	NA

DBSCAN-SWA_6

5448882 : 5456155

Pseudomonas_phage(85.71%)

integrase

attL 5448307:5448366|attR 5464169:5464250

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5448307:5448366	attL	NA	NA	NA	NA
WP_004352688.1\|5448882_5449884_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	7.6e-75	46.8
WP_004352686.1\|5449880_5451173_-	hypothetical protein	Q56VN8	Pseudomonas_phage	1.8e-241	92.3
WP_031632030.1\|5451431_5452694_-	hypothetical protein	Q56VN9	Pseudomonas_phage	7.8e-117	54.7
WP_003159569.1\|5452695_5453046_-	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	5.5e-20	41.1
WP_003163344.1\|5453055_5453664_-	hypothetical protein	NA	NA	NA	NA
WP_003124953.1\|5454318_5454537_-	hypothetical protein	NA	NA	NA	NA
WP_003115130.1\|5454812_5454905_-	hypothetical protein	Q56VP4	Pseudomonas_phage	7.3e-09	100.0
WP_046890062.1\|5454921_5455356_-	hypothetical protein	Q56VP5	Pseudomonas_phage	5.5e-62	98.6
WP_071659052.1\|5455867_5456155_-	DUF5447 family protein	Q56VP7	Pseudomonas_phage	1.2e-52	95.7
5464169:5464250	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013113

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection