CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP013250	Vibrio parahaemolyticus strain FORC_022 plasmid, complete sequence	0 crisprs	NA	0	1
NZ_CP013248	Vibrio parahaemolyticus strain FORC_022 chromosome 1, complete sequence	1 crisprs	cas3,RT,DinG,csa3,csx1,DEDDh	0	3
NZ_CP013249	Vibrio parahaemolyticus strain FORC_022 chromosome 2, complete sequence	3 crisprs	DEDDh,WYL,csa3,cas3,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	16	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12574 : 69252

Macacine_betaherpesvirus(14.29%)

transposase,integrase,protease

attL 5469:5485|attR 42037:42053

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5469:5485	attL	NA	NA	NA	NA
WP_017449255.1\|12574_13009_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_071653114.1\|13492_13708_+	hypothetical protein	NA	NA	NA	NA
WP_071653115.1\|14401_15334_+	OmpA family protein	NA	NA	NA	NA
WP_025789522.1\|15415_15664_+	hypothetical protein	NA	NA	NA	NA
WP_071653116.1\|15739_16039_+	hypothetical protein	NA	NA	NA	NA
WP_154036257.1\|16445_16622_+	hypothetical protein	NA	NA	NA	NA
WP_079866617.1\|17524_17869_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_129831129.1\|18487_18700_+	hypothetical protein	NA	NA	NA	NA
WP_071653119.1\|18715_19033_-	CcdB family protein	NA	NA	NA	NA
WP_017449246.1\|19032_19278_-	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_079866611.1\|19378_19864_-	recombinase family protein	NA	NA	NA	NA
WP_140062600.1\|19864_20053_-	hypothetical protein	NA	NA	NA	NA
WP_071653120.1\|20532_21609_+	replication initiation protein	NA	NA	NA	NA
WP_071653121.1\|22852_23584_+	hypothetical protein	NA	NA	NA	NA
WP_023624650.1\|24460_24802_-	endoribonuclease MazF	NA	NA	NA	NA
WP_071653122.1\|24798_25029_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_017449237.1\|25479_26205_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	3.7e-10	36.6
WP_071653123.1\|27896_28418_+	hypothetical protein	NA	NA	NA	NA
WP_079866612.1\|28417_29335_+	hypothetical protein	A5LH53	Enterobacteria_phage	1.0e-17	28.0
WP_154036182.1\|30353_31531_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.1e-117	65.8
WP_029865899.1\|34140_34653_+	hypothetical protein	NA	NA	NA	NA
WP_017449230.1\|36697_37759_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_017449229.1\|37755_38745_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_017449228.1\|38741_40085_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	3.7e-56	35.0
WP_071653126.1\|40233_40542_-	DUF1840 domain-containing protein	NA	NA	NA	NA
WP_100224982.1\|40634_40943_-	type II secretion system pilot lipoprotein GspS-beta	NA	NA	NA	NA
WP_017449226.1\|40995_42108_-	alanine/ornithine racemase family PLP-dependent enzyme	NA	NA	NA	NA
42037:42053	attR	NA	NA	NA	NA
WP_017449225.1\|42104_43310_-	DUF1611 domain-containing protein	NA	NA	NA	NA
WP_017449223.1\|45003_46116_+	OmpA family protein	G3M9Z0	Bacillus_virus	1.3e-11	30.2
WP_017449222.1\|46127_48635_+	hypothetical protein	A0A140XG62	Salmonella_phage	5.0e-06	23.1
WP_017449221.1\|49741_50026_+	hypothetical protein	NA	NA	NA	NA
WP_071653128.1\|51308_51494_+	hypothetical protein	NA	NA	NA	NA
WP_071653129.1\|51657_51948_+	hypothetical protein	NA	NA	NA	NA
WP_071653130.1\|52100_53006_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	5.9e-58	42.6
WP_071653131.1\|53075_53417_+	hypothetical protein	NA	NA	NA	NA
WP_071653132.1\|53577_53991_+	hypothetical protein	NA	NA	NA	NA
WP_024700500.1\|54096_54489_+	hypothetical protein	NA	NA	NA	NA
WP_071653133.1\|54803_55097_-	hypothetical protein	NA	NA	NA	NA
WP_017449212.1\|55126_55336_-	hypothetical protein	NA	NA	NA	NA
WP_071653163.1\|55912_58123_-	DNA topoisomerase III	NA	NA	NA	NA
WP_017449210.1\|58189_58930_-	hypothetical protein	NA	NA	NA	NA
WP_071653134.1\|58926_59466_-	DUF1845 domain-containing protein	NA	NA	NA	NA
WP_071653135.1\|59496_61458_-	TraM recognition domain-containing protein	NA	NA	NA	NA
WP_017449207.1\|62451_62859_-	H-NS histone family protein	NA	NA	NA	NA
WP_050914803.1\|63265_63652_-	hypothetical protein	NA	NA	NA	NA
WP_017449205.1\|63648_64362_-	hypothetical protein	NA	NA	NA	NA
WP_017449204.1\|64354_64645_-	hypothetical protein	NA	NA	NA	NA
WP_017449203.1\|64760_65342_-	hypothetical protein	NA	NA	NA	NA
WP_071653136.1\|65406_65922_-	lytic transglycosylase domain-containing protein	NA	NA	NA	NA
WP_153939781.1\|65935_66499_-	conjugative transfer signal peptidase TraF	NA	NA	NA	NA
WP_017449302.1\|67325_67478_-	Hok/Gef family protein	NA	NA	NA	NA
WP_017449301.1\|67798_68068_-	hypothetical protein	NA	NA	NA	NA
WP_071653137.1\|68211_69252_-\|protease	trypsin-like serine protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013248

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013248_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013248_1

2402779-2402890

Orphan

Consensus_repeat	Method
CAGCCATCGATGCCAATGCATCTTCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013248_1

>merge|NZ_CP013248|1|2402779-2402890|CRISPRCasFinder
CAGCCATCGATGCCAATGCATCTTCTTCCGCTTCGGCCGTTGGTGCTGCGGCTTGAACTTCAGATTCTGGTAGCTCAGGCTCGGCAGCCATGGATGCCAATGCATCTTCTTC

>NZ_CP013248|1|1|2402779-2402890|CRISPRCasFinder
CAGCCATCGATGCCAATGCATCTTCTTC	CGCTTCGGCCGTTGGTGCTGCGGCTTGAACTTCAGATTCTGGTAGCTCAGGCTCGG
CAGCCATGGATGCCAATGCATCTTCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013248.1\|WP_071652324.1\|2410336_2412355_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	unknown	unknown	gnl\|CDD\|234978
NZ_CP013248.1\|WP_005484550.1\|2397412_2397904_-\|bacteriocin-production-protein	unknown	unknown	gnl\|CDD\|182773
NZ_CP013248.1\|WP_005494426.1\|2393536_2394643_-\|response-regulator	unknown	unknown	gnl\|CDD\|182652
NZ_CP013248.1\|WP_071652325.1\|2412458_2412983_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
NZ_CP013248.1\|WP_005479529.1\|2401007_2401802_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP013248.1\|WP_011106036.1\|2412936_2413101_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013248.1\|WP_005460107.1\|2394917_2395793_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP013248.1\|WP_071652322.1\|2398588_2399851_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	unknown	unknown	gnl\|CDD\|182774
NZ_CP013248.1\|WP_005484378.1\|2395861_2397376_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236427
NZ_CP013248.1\|WP_011106037.1\|2414253_2414376_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013248.1\|WP_005460137.1\|2406454_2407468_-\|aspartate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237845
NZ_CP013248.1\|WP_005460738.1\|2408996_2410208_-\|beta-ketoacyl-ACP-synthase-I	unknown	unknown	gnl\|CDD\|181184
NZ_CP013248.1\|WP_021484851.1\|2397965_2398574_-\|SPOR-domain-containing-protein	unknown	unknown	gnl\|CDD\|225689
NZ_CP013248.1\|WP_005479532.1\|2413262_2413526_-\|YfcL-family-protein	unknown	unknown	gnl\|CDD\|378085
NZ_CP013248.1\|WP_005460141.1\|2399896_2400823_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP013248.1\|WP_005457667.1\|2414413_2415037_+\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
NZ_CP013248.1\|WP_005380608.1\|2393162_2393294_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013248.1\|WP_025506655.1\|2413550_2414081_-\|elongation-factor-P-hydroxylase	unknown	unknown	gnl\|CDD\|377299
NZ_CP013248.1\|WP_005494429.1\|2392742_2393147_-\|YbaN-family-protein	unknown	unknown	gnl\|CDD\|377291
NZ_CP013248.1\|WP_021453433.1\|2407464_2408598_-\|4-phosphoerythronate-dehydrogenase	unknown	unknown	gnl\|CDD\|240635

Protein	Function_ID	Function_description	E-value
NZ_CP013248.1\|WP_071652324.1\|2410336_2412355_+\|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC	gnl\|CDD\|234978	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC.	0
NZ_CP013248.1\|WP_005484550.1\|2397412_2397904_-\|bacteriocin-production-protein	gnl\|CDD\|182773	PRK10845, PRK10845, colicin V production protein; Provisional.	1.80641e-74
NZ_CP013248.1\|WP_005494426.1\|2393536_2394643_-\|response-regulator	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	5.86726e-44
NZ_CP013248.1\|WP_071652325.1\|2412458_2412983_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	3.19109e-32
NZ_CP013248.1\|WP_005479529.1\|2401007_2401802_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	5.39761e-151
NZ_CP013248.1\|WP_005460107.1\|2394917_2395793_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.47903e-64
NZ_CP013248.1\|WP_071652322.1\|2398588_2399851_-\|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase	gnl\|CDD\|182774	PRK10846, PRK10846, bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional.	0
NZ_CP013248.1\|WP_005484378.1\|2395861_2397376_-\|amidophosphoribosyltransferase	gnl\|CDD\|236427	PRK09246, PRK09246, amidophosphoribosyltransferase; Provisional.	0
NZ_CP013248.1\|WP_005460137.1\|2406454_2407468_-\|aspartate-semialdehyde-dehydrogenase	gnl\|CDD\|237845	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional.	0
NZ_CP013248.1\|WP_005460738.1\|2408996_2410208_-\|beta-ketoacyl-ACP-synthase-I	gnl\|CDD\|181184	PRK07967, PRK07967, beta-ketoacyl-ACP synthase I.	0
NZ_CP013248.1\|WP_021484851.1\|2397965_2398574_-\|SPOR-domain-containing-protein	gnl\|CDD\|225689	COG3147, DedD, Uncharacterized protein conserved in bacteria [Function unknown].	6.24339e-45
NZ_CP013248.1\|WP_005479532.1\|2413262_2413526_-\|YfcL-family-protein	gnl\|CDD\|378085	pfam08891, YfcL, YfcL protein. This family of proteins are functionally uncharacterized. THey are related to the short YfcL protein from E. coli.	7.21812e-35
NZ_CP013248.1\|WP_005460141.1\|2399896_2400823_-\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_CP013248.1\|WP_005457667.1\|2414413_2415037_+\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	1.7899e-79
NZ_CP013248.1\|WP_025506655.1\|2413550_2414081_-\|elongation-factor-P-hydroxylase	gnl\|CDD\|377299	pfam04315, EpmC, Elongation factor P hydroxylase. This family catalyzes the final step in the elongation factor P modification pathway. It hydroxylates Lys-34 of elongation factor P. Members of this family have a conserved HEXXH motif, suggesting they are putative peptidases of zincin fold.	7.46525e-108
NZ_CP013248.1\|WP_005494429.1\|2392742_2393147_-\|YbaN-family-protein	gnl\|CDD\|377291	pfam04304, DUF454, Protein of unknown function (DUF454). Predicted membrane protein.	7.06744e-43
NZ_CP013248.1\|WP_021453433.1\|2407464_2408598_-\|4-phosphoerythronate-dehydrogenase	gnl\|CDD\|240635	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains. D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence.	0

>NZ_CP013248.1|WP_005479529.1|2401007_2401802_-|tRNA-pseudouridine(38-40)-synthase-TruA
MRIALGIEYNGTNYFGWQRQREVKSVQEELEKALSIVANHPVEVQCAGRTDAGVHGTGQVVHFDTNVNRKMVAWTMGANANMPSDIAVRWAKEVPDDFHARFSATARRYRYIIFNHALRPGILNSGVSHYHGELDEKKMHEAGQYLLGENDFSSFRAAHCQSLSPCRNLMHLNVTRHGDYVVIDIKANAFVHHMVRNITGSLIKVGRGEEKPEWIKWLLEAKDRKLAGATAKAEGLYLVDVDYPEEFELPCVPIGPLFLPDNLN
>NZ_CP013248.1|WP_005460141.1|2399896_2400823_-|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MSWLEKILEKSNLVSSRKASIPEGVWTKCTSCEQVLYHAELERNLEVCPKCNHHMRMKARRRLETFLDEGNRVELGTELEPQDKLKFKDSKRYKERISAAQKSSGEKDALIVMQGELLGMPLVACAFEFSFMGGSMGSVVGARFVKAVEAAIENNCALVCFSASGGARMQEALMSLMQMAKTSAALERLSEKGLPFISVLTDPTMGGVSASLAMLGDINIGEPKALIGFAGRRVIEQTVREDLPEGFQRSEFLLEHGAIDMIVDRREMRQRVGGLIAKMTNHKSPLVVSVNESPNEEPYSVPEVDEKG
>NZ_CP013248.1|WP_071652322.1|2398588_2399851_-|bifunctional-tetrahydrofolate-synthase/dihydrofolate-synthase
MTQNPIPQATSPLAMWLDYLSNIHSSAIDLGLDRVQAVATKANLTKPAPTVITVAGTNGKGSTCALMEAILLDAGYSVGVYSSPHLIRYNERVRINGVDVEDAKHCEAFDYVEKQRGDISLSLFEFGTLAALRIFQVENVDVVLLEVGLGGRLDATNVVDHDVSVITSLAIDHVDWLGDDINVIGFEKAGIYRAGKPAICGQPLPPATVAAHADDIGAEFFQVGIQFDYALTEKGWKWSSGAFALEDLPLPSLPLPNAATALMALGASELQITDINIVNGLNNARLAGRMQVLQHEPEIVLDVAHNPHSAEYLVEKVKTQYAGKTIHVVIAMLHDKDIKATLAALKPIATHWYPASLTGPRAATADELCQYLPQGQVQFQTPIEAFESALSSAASDDVVLVAGSFHTVGEVLEHWQSKNK
>NZ_CP013248.1|WP_021484851.1|2397965_2398574_-|SPOR-domain-containing-protein
MASKFQSRLVGTIILVAVGVIVLPDVLDGKKLHYKEEFASIPIKPELDSDVENFEILEPVEDDIVLPESPVEAVVQESEERQVNASQPEQKPEPTPQPVEVKQPKQPEQVEIAVRPVEEKNQYEDSAWIIQLMALKNHENAEALVADLQKRGYQAHTKKENDFTRVIVGPDVSKSKLERQVQELQKITGSKGQLLKFKPLNP
>NZ_CP013248.1|WP_005484550.1|2397412_2397904_-|bacteriocin-production-protein
MNWIDFIILGVIGFSALISLVRGFAKEALSLVIWFGAFFISSNYYAKLAVYFTNIKDDMFRNGAAIAALFVATLVVGAVVNYVIGQLVQKTGLSGTDRILGIVFGGLRGVLIVSAVLFFMDAFTAFPSSDWWKESQLIPEFSRIIAPFFEHLQATSSFLSGTI
>NZ_CP013248.1|WP_005484378.1|2395861_2397376_-|amidophosphoribosyltransferase
MCGIVGIVGTTPVNQSIYDALTVLQHRGQDAAGICTIESNRFRLRKANGLVKDVFEARHMQRLQGEVGIGHVRYPTAGSSSASEAQPFYVNSPFGITLAHNGNLTNAHEVRQKLFEKDRRHINTTSDSEVLLNVLAHEIDTVKGNVTAEDVFRAVTNVHRTIRGAYAVTAMIIGHGMIAFRDPHGIRPLCLGKREVAGRTEYMVASESVALDAVGFDFVRDVAPGEAVYATFEGELFTKQCADNPKLNPCIFEFVYFARPDSFIDKISVYSARVEMGKKLGERIREDYADLDIDVVIPIPETSCDIALQIAQAIDIPYRQGFVKNRYVGRTFIMPGQQQRKKSVRRKLNAIRSEFKDKNVLLVDDSIVRGTTSEQIIEMARDSGAKKVYMVSAAPEVRFPNVYGIDMPSATELIAHGRDNETICKQIGADALIYQRLDDLVEAVGLGNQDITQFDTSVFNGEYVTGDIDQQYLDFLDGLRNDDAKTQREIQQDLANLELHNEGA
>NZ_CP013248.1|WP_005460107.1|2394917_2395793_+|LysR-family-transcriptional-regulator
MKLDDLNLFRLVVENGSYTATSRKTMIPVATITRRIQALEDSVNLRLLNRHARKLSLTEAGERFYHECSPLLQRLTSTAEEITDDCRGASGKIKISAPYNLTKRMMMPMFNDFMKKYPDINIELTTENNADQLDPTEWDVIFRVGPQRDSSLIARKIGEVKDILVASQDYLAANPAPNHAEELSNHSLLKGYPLIKWTLINSKGESVVNVERGRFQANALNVVRSACSEGLGITLMPDVMIKEYIESGELLRVLPDWSANPRDIYMLYNHKDHLPEKVRLFIDFVIAYNIH
>NZ_CP013248.1|WP_005494426.1|2393536_2394643_-|response-regulator
MFKTHSQTAMVSAQEVVNRKLIMLVDDDPIFRNVTNAYLESQGFKVVEAENGLEALHQLRECQPDLVLCDLSMPVLDGIEFVEEVSLEYPSLPLIVVSGTDEMSDVAKALRFGIKDFLPKPIGNYEHLSQAIDNTLEDSDCHFAEQRDFSSQWFRVDDGGEIPDEQELHWHLEYLQQNPNAARDLLHALLPDKDASQGDWRCSYRLLQSADLMPLVFDYRWLMNGQFAFYLVDSASQENGGVATTLLVRALFDDYLRNLKSFSADLKDMVNIMEKGIECSDCAGAVKAVFGVADLASSTVSLLPAGLDSQWSDGHENQHIAAGNRLGDGSMKNFITRDLPLKTTGQLSIGCLGASSFSLNITRVNRLV
>NZ_CP013248.1|WP_005380608.1|2393162_2393294_-|hypothetical-protein
MADKDFKEPYNIFYFLGFIAVLLIPTLPATLTWLRVMNGYAGF
>NZ_CP013248.1|WP_005494429.1|2392742_2393147_-|YbaN-family-protein
MEFTIRIKRYFFNIVGGLCIALGIAGIALPLLPTTPFILLASACFMRGSPAFHHWLHNHKTFGPILDNWHRHRAVSPKVKQRGAVFIILSFTVSIIVAPIIWVKIALLVMLIVLLSWFMRLPVIELVADREENH
>NZ_CP013248.1|WP_005460137.1|2406454_2407468_-|aspartate-semialdehyde-dehydrogenase
MSQQYNVAILGATGAVGETILEVLQERKFPVGELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQAHIALFSAGGDLSAKWAPIAADEGVIVIDNTSHFRYEYDIPLVVPEVNPEAIAEFRNRNIIANPNCSTIQMLVALKPIHDAVGIERINVSTYQSVSGAGKAGIDELAGQTAKLLNGLPADKKQFSQQIAFNCIPQIDQMMENGYTKEEMKMVWETQKIFNDPSITVNPTCVRVPVFYGHAEAVHVETRSPIDAQEVINLLEQTEGVEVFHGDDFPTQVRDAGGKDHVMVGRIRNDISHHSGVNLWVVADNVRKGAATNAVQIAEVLIRDYY
>NZ_CP013248.1|WP_021453433.1|2407464_2408598_-|4-phosphoerythronate-dehydrogenase
MKIIVDENMPYAEELFSQLGEVILKPGRTLTADDLIDIDALMIRSVTKVNAELISKANKLKFVGTATAGMDHVDQALLKEKGIFFTAAPGCNKVGVAEYAFSVMMVLAQQQGFSVFDKTVGIIGAGQVGSYLEKCLKGMGINVLINDPFKQEAGDPRSFTPLAELIEQSDIITLHTPITKDGPYPTHHLIDEKVLNGLRGDQILINAARGPVVDNQALKQRLMKQDGFTAALDVFEFEPEVDMELLPLLAFATPHVAGYGLEGKARGTTMIFNSYCEFLNNELRAHASDLLPTAPVPTMMLDRAWDEATLHNITQLIYDVRKDDALFRREISKPGAFDLMRKNYWDRREYSAVTLVGNETCNLAPLAELGFQIEVSQ
>NZ_CP013248.1|WP_005460738.1|2408996_2410208_-|beta-ketoacyl-ACP-synthase-I
MKRVVITGMGIVSSIGNNVEEVLASLKAGKSGITASEQFKEHGLRSQVWGDLKINPAEHIDRKQMRFMGDAAAYAYLSMQQAIEDAGLTEEQVSNDRTGIVAGSGGASALNQTVATDIMREKGVKRVGPYMVPRTMSSTVSACLATPFKIRGVNYSMSSACATSAHCIGHAMELIQLGKQDIVFAGGGEELDWSQTMMFDAMGALSTKYNDTPEKASRTYDADRDGFVISGGGGMLVIEELEHALARGAKIYGEIVGYGATSDGYDMVAPSGEGAVRCMKMAMQDVDSIDYVNTHGTSTPVGDVKELGAIQELFGDNSPAISATKAMTGHALGAAGVHEAIYSTLMLDNNFIAPSINIENLDEAAKGLDIVTEARDAELTTVMSNSFGFGGTNATLVIKKYQA
>NZ_CP013248.1|WP_071652324.1|2410336_2412355_+|bifunctional-tRNA-(5-methylaminomethyl-2-thiouridine)(34)-methyltransferase-MnmD/FAD-dependent-5-carboxymethylaminomethyl-2-thiouridine(34)-oxidoreductase-MnmC
MTSIKNAELGWNEAGTPVSDQFDDVYFSNVNGLEETRYVFLKQNHLPERWQEFDQRRFVIGETGFGTGLNFLAVWQWFNEFRRNHPDAALKELHFISFEKYPLSLADLKKAHEAWPELAEYAEKLQKHYPAAVPECHRIVLENGAITLDLWFGDIKDCMPQVPYNEQGLIDAWFLDGFAPSKNPEMWNQNLFNNMAKLAKQDCTVATFTAAGFVRRGLNEAGFAMKKVKGFGTKREMIAGSMEQREKQSNHLAWFNRTASSNLDSIAIIGGGIASAALAKTLVRRGQNVTLYCKDTQPAEGASGNRQGAVYPLLNGPHTGVSRVFAPAFLFARQFVEQAAQEIDFDHDWCGVTQLMWDDKSTDKLEKMLEGNFTPELICKLSAEETAETIGLSIDMASVHYPMGGWLCPAELTRGLITQLEKTELFEAKFEHQVESLTWDEARELWTLKANGQNFEHSTVVVANGNEFQTLSQTEALPMGQVKGQVSHAPTTKTLSKLKSVLCYDGYMTPVNPNNQHLCIGASYDRSHLDYEFDENAQRDNVEKLVKCIPNQEWTKEVDTSGNLSRQGIRCVSRDHLPFVGNVGDFETIKTQYADLQNKPEEEVEAIHQFPNLFCFLGLGSRGLSSAPLLAEVLASQICGDPLPLPVDVLTELHPSRMWVRKLRKGKAITEL
>NZ_CP013248.1|WP_071652325.1|2412458_2412983_-|NAD(P)H-dependent-oxidoreductase
MKIVAFGASTSSTSINKTLATYAALQVEGAQVNVLDLNNYNVPMFSEDKEKEIGQAEGAIAFLRELEQADAIVVSFAEHNGSYAAAYKNLFDWATRIERNVFQNKPVVYLATSPGPGGAQSVLAAATGSAPFFGADVKASLSVPSFYENFDLESGEIVNQEIAEQVKQAVALLK
>NZ_CP013248.1|WP_011106036.1|2412936_2413101_+|hypothetical-protein
MIEVELVEAPNATIFMVIFLCSRFMLCRIKVKQAGNNHKNLMERFEYFEGVDFN
>NZ_CP013248.1|WP_005479532.1|2413262_2413526_-|YfcL-family-protein
MIIEFEEKLLELIDARIENASDDELFAGGYLRGHISLSAASCEEDGINDVEELKSRIANSLEEARAELTPADRVIVSDLWQELQSQA
>NZ_CP013248.1|WP_025506655.1|2413550_2414081_-|elongation-factor-P-hydroxylase
MTHEYQDLITIFNDTFLEQFNTTLELGGDEPIYLPADDEHPHHRIIFARGFYASALHEIAHWCVAGPERRLMEDFGYWYEPDGRTEAVQAEFEKVEIRPQAYEWILATSAGFPFTVSCDNLHGDFEPDRLGFMQKVHKEVLGILEAGLPQRVKMLSDALRAFYQTKPLEASDFSVK
>NZ_CP013248.1|WP_011106037.1|2414253_2414376_+|hypothetical-protein
MVPLKLLFFKQFDYEHVAGFNHFLRLIKPFVSVVTALTIL
>NZ_CP013248.1|WP_005457667.1|2414413_2415037_+|trimeric-intracellular-cation-channel-family-protein
MLLSVLYIIGITAEAMTGALSAGRRKMDWFGVMLVASATAIGGGTVRDILLGHYPLGWVKNPEFLAITCVAGVLTTGLAKWVIKLKGLFIRLDALGLIVFSIIGTKIAMGMGLHPGICMVSALVTGVFGGLLRDLICRQTPLVLHEELYASIALIASGLYLALLEFSVPDVTATIVTLVVGYVLRMAAVRFKWRLPSFQLETESSLH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

704903 : 711605

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005483011.1\|704903_706043_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.3e-62	41.7
WP_025554118.1\|706060_707311_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.8e-98	47.7
WP_005482986.1\|707438_707888_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_053301609.1\|707895_709020_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	3.1e-48	36.0
WP_005483039.1\|709032_709686_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.6e-33	37.5
WP_024703713.1\|709855_710965_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.6e-63	39.6
WP_005440184.1\|711134_711605_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3

DBSCAN-SWA_2

1442610 : 1455592

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_069505765.1\|1442610_1445775_-	hypothetical protein	I3PUZ3	Vibrio_phage	8.7e-24	33.6
WP_127463331.1\|1445787_1445967_-	hypothetical protein	NA	NA	NA	NA
WP_049874960.1\|1446755_1447472_-	helix-turn-helix domain-containing protein	G9L676	Escherichia_phage	1.4e-22	37.2
WP_021453632.1\|1447523_1447775_+	hypothetical protein	A0A1I9KFF6	Aeromonas_phage	2.9e-07	41.9
WP_005495415.1\|1447794_1448259_+	hypothetical protein	K7PJS5	Enterobacterial_phage	3.0e-18	48.0
WP_005495414.1\|1448255_1448474_+	hypothetical protein	NA	NA	NA	NA
WP_025542387.1\|1448539_1449493_+	helix-turn-helix domain-containing protein	A0A1V0E831	Vibrio_phage	2.2e-39	35.7
WP_005495410.1\|1449489_1449870_+	hypothetical protein	NA	NA	NA	NA
WP_005495408.1\|1449862_1450513_+	DUF1367 family protein	K7PKS6	Enterobacteria_phage	7.0e-21	36.5
WP_005495404.1\|1450681_1451083_+	NinG recombination protein/bacteriophage lambda NinG family protein	A0A2I7S3K0	Vibrio_phage	3.7e-20	45.0
WP_005495402.1\|1451119_1451527_+	APSE-2 prophage; Q protein	NA	NA	NA	NA
WP_005483162.1\|1451749_1451953_-	hypothetical protein	NA	NA	NA	NA
WP_005483265.1\|1452859_1453072_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.9e-16	61.2
WP_071652005.1\|1453366_1455592_+	ribonuclease R	Q0GXV6	Lactococcus_phage	8.2e-61	31.9

DBSCAN-SWA_3

2794042 : 2811214

uncultured_Mediterranean_phage(20.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005455546.1\|2794042_2796625_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.0e-78	37.9
WP_005455548.1\|2796767_2797235_-	recombination regulator RecX	NA	NA	NA	NA
WP_005478550.1\|2797358_2798402_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	8.1e-112	60.7
WP_071652395.1\|2798602_2799085_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.2e-27	48.7
WP_025442244.1\|2799169_2801731_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.5e-34	24.0
WP_005455560.1\|2802879_2803803_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	4.1e-06	35.2
WP_005455562.1\|2803817_2804444_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-35	52.1
WP_021450028.1\|2804443_2805220_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.6e-66	52.4
WP_071652396.1\|2805219_2806263_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_062854436.1\|2806309_2806786_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_071652397.1\|2806803_2807508_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	4.5e-05	24.3
WP_005455577.1\|2807509_2807791_-	cell division protein FtsB	NA	NA	NA	NA
WP_005455579.1\|2808193_2809495_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.2e-134	59.2
WP_005455581.1\|2809573_2811214_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.2e-155	52.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP013249

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013249_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013249_1

68676-68773

Orphan

Consensus_repeat	Method
TATTTTTAAAATGCCTTTTCAAAAA	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP013249_1

>merge|NZ_CP013249|1|68676-68773|CRISPRCasFinder
TATTTTTAAAATGCCTTTTCAAAAATTTGAAACCGCGCAATTAAAGAATCCAGAAAAACAAGATCGCAATCAATATTTTTAAAACGCCTTTTCAAAAA

>NZ_CP013249|1|1|68676-68773|CRISPRCasFinder
TATTTTTAAAATGCCTTTTCAAAAA	TTTGAAACCGCGCAATTAAAGAATCCAGAAAAACAAGATCGCAATCAA
TATTTTTAAAACGCCTTTTCAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013249.1\|WP_005467181.1\|70184_70505_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380366
NZ_CP013249.1\|WP_005460834.1\|73209_73833_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_CP013249.1\|WP_005464972.1\|64299_65169_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176159
NZ_CP013249.1\|WP_071652570.1\|63412_64219_+\|arylamine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366312
NZ_CP013249.1\|WP_062851909.1\|65169_65880_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|236392
NZ_CP013249.1\|WP_031831553.1\|58658_59063_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013249.1\|WP_069502250.1\|71258_72170_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP013249.1\|WP_005460779.1\|70545_71181_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|181746
NZ_CP013249.1\|WP_005482867.1\|65882_67751_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225457
NZ_CP013249.1\|WP_005482845.1\|75887_76565_+\|porin	unknown	unknown	gnl\|CDD\|368776
NZ_CP013249.1\|WP_071652571.1\|74018_75758_-\|transporter	unknown	unknown	gnl\|CDD\|271371
NZ_CP013249.1\|WP_005482884.1\|72268_73198_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|238571
NZ_CP013249.1\|WP_053314787.1\|60163_60646_-\|oxidoreductase	unknown	unknown	gnl\|CDD\|226429
NZ_CP013249.1\|WP_005497706.1\|69652_70177_+\|YgjV-family-protein	unknown	unknown	gnl\|CDD\|378474
NZ_CP013249.1\|WP_071652572.1\|76580_78809_+\|exopolygalacturonate-lyase	unknown	unknown	unknown
NZ_CP013249.1\|WP_025521137.1\|59072_60164_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP013249.1\|WP_005464966.1\|61069_61909_-\|S-formylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|178061
NZ_CP013249.1\|WP_005464962.1\|61970_63119_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NZ_CP013249.1\|WP_005497702.1\|67834_68632_-\|DNA-binding-transcriptional-regulator-KdgR	unknown	unknown	gnl\|CDD\|185046
NZ_CP013249.1\|WP_005482916.1\|68872_69634_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	unknown	unknown	gnl\|CDD\|181605

Protein	Function_ID	Function_description	E-value
NZ_CP013249.1\|WP_005467181.1\|70184_70505_+\|cupin-domain-containing-protein	gnl\|CDD\|380366	cd02238, cupin_KdgF, pectin degradation protein KdgF and related proteins, cupin domain. This family includes bacterial and archaeal pectin degradation protein KdgF that catalyzes the linearization of unsaturated uronates from both pectin and alginate, which are polysaccharides found in the cell walls of plants and brown algae, respectively, and represent an important source of carbon. These polysaccharides, mostly consisting of chains of uronates, can be metabolized by bacteria through a pathway of enzymatic steps to the key metabolite 2-keto-3-deoxygluconate (KDG). Pectin degradation is used by many plant-pathogenic bacteria during infection, and also, pectin and alginate can both represent abundant sources of carbohydrate for the production of biofuels. These proteins belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	1.13072e-54
NZ_CP013249.1\|WP_005460834.1\|73209_73833_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	4.28455e-121
NZ_CP013249.1\|WP_071652570.1\|63412_64219_+\|arylamine-N-acetyltransferase	gnl\|CDD\|366312	pfam00797, Acetyltransf_2, N-acetyltransferase. Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30kDa. It facilitates the transfer of an acetyl group from Acetyl Coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (M. tuberculosis, M. smegmatis etc) to man. It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat Tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid.	3.33006e-96
NZ_CP013249.1\|WP_062851909.1\|65169_65880_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|236392	PRK09146, PRK09146, DNA polymerase III subunit epsilon; Validated.	2.02339e-38
NZ_CP013249.1\|WP_005482867.1\|65882_67751_-\|CBS-domain-containing-protein	gnl\|CDD\|225457	COG2905, COG2905, Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms].	2.84814e-139
NZ_CP013249.1\|WP_069502250.1\|71258_72170_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	1.43094e-18
NZ_CP013249.1\|WP_005460779.1\|70545_71181_+\|RpiB/LacA/LacB-family-sugar-phosphate-isomerase	gnl\|CDD\|181746	PRK09273, PRK09273, hypothetical protein; Provisional.	2.15977e-144
NZ_CP013249.1\|WP_005464972.1\|64299_65169_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176159	cd08470, PBP2_CrgA_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding domain. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 1. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.14139e-108
NZ_CP013249.1\|WP_005482845.1\|75887_76565_+\|porin	gnl\|CDD\|368776	pfam06178, KdgM, Oligogalacturonate-specific porin protein (KdgM). This family consists of several bacterial proteins which are homologous to the oligogalacturonate-specific porin protein KdgM from Erwinia chrysanthemi. The phytopathogenic Gram-negative bacteria Erwinia chrysanthemi secretes pectinases, which are able to degrade the pectic polymers of plant cell walls, and uses the degradation products as a carbon source for growth. KdgM is a major outer membrane protein, whose synthesis is strongly induced in the presence of pectic derivatives. KdgM behaves like a voltage-dependent porin that is slightly selective for anions and that exhibits fast block in the presence of trigalacturonate. In contrast to most porins, KdgM seems to be monomeric.	3.08357e-24
NZ_CP013249.1\|WP_071652571.1\|74018_75758_-\|transporter	gnl\|CDD\|271371	cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5 subfamily; putative solute-binding domain. SLC5 (also called the sodium/glucose cotransporter family or solute sodium symporter family) is a family of proteins that co-transports Na+ with sugars, amino acids, inorganic ions or vitamins. Prokaryotic members of this family include Vibrio parahaemolyticus glucose/galactose (vSGLT), and Escherichia coli proline (PutP) and pantothenate (PutF) cotransporters. One member of the SLC5 family, human SGLT3, has been characterized as a glucose sensor and not a transporter. This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	2.63434e-108
NZ_CP013249.1\|WP_005482884.1\|72268_73198_+\|sugar-kinase	gnl\|CDD\|238571	cd01166, KdgK, 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.	1.15929e-102
NZ_CP013249.1\|WP_053314787.1\|60163_60646_-\|oxidoreductase	gnl\|CDD\|226429	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown].	2.47409e-40
NZ_CP013249.1\|WP_005497706.1\|69652_70177_+\|YgjV-family-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	9.00507e-50
NZ_CP013249.1\|WP_025521137.1\|59072_60164_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	8.4425e-43
NZ_CP013249.1\|WP_005464966.1\|61069_61909_-\|S-formylglutathione-hydrolase	gnl\|CDD\|178061	PLN02442, PLN02442, S-formylglutathione hydrolase.	5.2905e-143
NZ_CP013249.1\|WP_005464962.1\|61970_63119_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NZ_CP013249.1\|WP_005497702.1\|67834_68632_-\|DNA-binding-transcriptional-regulator-KdgR	gnl\|CDD\|185046	PRK15090, PRK15090, DNA-binding transcriptional regulator KdgR; Provisional.	0
NZ_CP013249.1\|WP_005482916.1\|68872_69634_+\|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD	gnl\|CDD\|181605	PRK08993, PRK08993, 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD.	0

>NZ_CP013249.1|WP_005497702.1|67834_68632_-|DNA-binding-transcriptional-regulator-KdgR
MKGATMEKSTQPEAVSSVLKVFHILQALGEQKAIGVSELSQRLMMSKATTYRFLQTMKSLGYVSQEGEADKYSLTLKLFELGAKSLEYVDLIELADKEMRHISEQTNEALHLGALDENAIIYIHKIDSGYNLRMQSRIGRRNPLYSTAIGKVLLSERDESFVRDVLSDVEFIKHTEKTLENTDQVLEELAKVRDFHYAEDNEEQEPGLRCIAAPIYDRFGQIIAGLSISFPTIRFDEERMEYYVGLLHQAGKNISEQLGYHDYPA
>NZ_CP013249.1|WP_005482867.1|65882_67751_-|CBS-domain-containing-protein
MGTSVTPNIFDFLIKIDPFDKLPEPVVESIANSVKVKYLVRGETIGFSALCDQRYLYIIRTGAIEQRTPNGELRARLGQDDQFGFTFLDPLENAEDGYQAEAIEDSLLYLIPHSELKLVSEEHPEFADYFAAQANVRLSSAVKYVCRKEEKGLFFRTVGEIASENIAIVDVNDSIRSVAQTMCGKQRSSCAVVMKEGEIIGLVTDRDMTKSVVAQDMDTNQPIADVMTPNPVLIEDDAKVIQAISLMLQYNIRCLPVVHGKQVKGLLTTTHLVHNHRTQSLFLIEKIKYASSLNALAALKEERQTIFQALVESGVSAEIQGRVMSMIMDAFTRRIIQLNEELLGPPPCDYAWLVAGSHARNEVHMLSDQDSAIVLSDDATEEHKLYFTHLAMRVCNGLAACGYPLCDGKYMAASPKWCQPIRRWKEYYQKWVASPEYNKLLSISVFLEVRAIHGNREFVDQIQQHLHDCIQKSPSFIPALVRDAIDTQPPLGIFNNLVLEKGGENSNTLNIKKYALNLIIDLARIFSLAAGGSLTGTEERFRYAAQHGTLSKDSVENIIGAYRFITQVRFRHQLNAILAGTTPDNHIAPDDFSSFERKHLKDAFKIISELQDVAKLKFVKGA
>NZ_CP013249.1|WP_062851909.1|65169_65880_-|DNA-polymerase-III-subunit-epsilon
MIKRWFKRWETPLSPEQKRQAIHVVDDWPMVLKDYLQRPLVDDSTTLKDLSFVALDFETTGVDAQGDKILSIGVVDLTLDGIDIASSKEWYICHGQFIKPETAQINGLTPQDLAKGLPLDEGMNRLLERITGKVVLAHGCCIEKAFIHAYFSSHYQVEDFPAYFIDTLQIEKQFSYAGKSGAHSSYQLDDLRRYYHLPGYLSHSAASDALACAELFLVQSKKLTALPDVTLRQLMR
>NZ_CP013249.1|WP_005464972.1|64299_65169_+|LysR-family-transcriptional-regulator
MANWEGVSEFVAVAETNSFTGAAAKLKTSVAQISRRVSALEERLAVKLLHRTTRKVSLSEAGQLYYQQCKHLVEGLELAELAVTQMQTEPRGLLRVTAPVTYGEMNLAPLLHQFLEKYPRVDLDLVLTNQKLDLIEQGVDVAIRLGRLQDSSMIAKRLSSRQTYVCASPMYLERFGEPHTLSELGRHQCLVGSVDYWHFKENKRDKSLRVSGRIKCNSGFALVDAAKRGLGLVQLPDYYVQEALDSGELVEVLTDYRDDREGIWALYPQSRNLSPKVRLLIDFLAQELA
>NZ_CP013249.1|WP_071652570.1|63412_64219_+|arylamine-N-acetyltransferase
MNKTDLNAYLTKLGLPSELPADLESLHKIHVAQHRCLPFENFDISLQRGISAEIEDIIQKTVYHSRGGYCFELNGLMLDVLKTLGFEARSLLGRVHVMGTPTGRSHQITLVTLDEQAWVVDVGFGSNTPRAPLPFILNQVIQTDLQTFRFVEDAQFGYFLQVLSTDGTDTWNNLYSFDLEFVFAGDIACGNFFTSTSPHSRFTSARVAAKATESGLVTLLNYTLKYTSQGEQTELELEPGQAYLDALKEYFGIELDAQYGDLRPLPDA
>NZ_CP013249.1|WP_005464962.1|61970_63119_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MTLEIKPGQTHIKSKAMVAWAAGEPLKMEEVDVQLPKAGEVLVRIVATGVCHTDAFTLSGDDPEGIFPSILGHEGGGIVEMVGEGVTSVEVGDHVIPLYTAECGECKFCKSGKTNLCQAVRETQGKGLMPDGTSRFSINGETIFHYMGCSTFSEYTVLPEISLAKVNKQAPLEEVCLLGCGVTTGMGAVLNTAKVEKGDTVAIFGLGGIGLSAIIGARMAGASRIIGIDINESKFDLAKQLGATDVINPQKFDKPIQEVIVEMTDGGVDYSFECIGNVNVMRQALECCHKGWGESVIIGVAGAGQEISTRPFQLVTGRVWRGSAFGGVKGRSELPEIVNRYMAGEFGLQEFITHTMGLEDVNKAFDLMHEGKSIRTVIHMDK
>NZ_CP013249.1|WP_005464966.1|61069_61909_-|S-formylglutathione-hydrolase
MTIENVSQTKVFGGWHKQYTHDSKALNCTMRFAIFLPPNATKSNPVPALYWLSGLTCTDENFMQKAGAFRMAAELGIAIIAPDTSPRGEGVADDASYDLGQGAGFYLNATQAPWSLHYHMYDYVTQELPAIIEANFPVSDVKSISGHSMGGHGALTIGLKNPTLYRSISAFSPISNPMQCPWGQKAFTAYLGTDIESWKQYDASELLKKEKSPLPILVDQGDADGFLSEQLKPEVLLAAAKQHGSELNLRMQSGYDHSYYFISSFIDNHLNFHAKYLFA
>NZ_CP013249.1|WP_053314787.1|60163_60646_-|oxidoreductase
MKNKRAYDEKIVSLSLLLFAPFLSANSITFSSPQQPSVTLKLEELQSLPTTSYTTDLPWIQQSSEFLGVKLSTLLTHVYGSIPEQVDIGSLNNYHSTLSRKDIVRYQPILAYQQDHHYIKVRNKGPYWVIYPLSQYPELDHNEYHAQMVWQVNEMKIKQK
>NZ_CP013249.1|WP_025521137.1|59072_60164_-|GGDEF-domain-containing-protein
MKLSEAYPIKQKNYSTTSKMLLLVFATSLLLANVILLQQTRVLAQSFTDEQKQATWFLFQLSKELSELVSEARRLDENVLKIEGAELQYELAWSRFDLLINSKDVYTFFSRNHIQQYFLQLFNEFKELEPLLVEAKTGDSQAAAQFYRATQTLYLNLVEFVNQNFRLTSQVYETQKDESQRLMKAQYMLFATFVLSILSLTYFFYRESHFHRKLALSDPLTGLGNRNALFVTLRNNTRNRTAFSLCLLDLNGFKNVNDTYGHQAGDTVLYEIAKRLKDMNIDSFSTYRMGGDEFAVVIESSDVDAEEAKKHIHSVFDTPVLNANNVSSLSTSIGVAHYPSDSDNVDFLISIADKRMYKMKFQR
>NZ_CP013249.1|WP_031831553.1|58658_59063_-|hypothetical-protein
MMRKFMQVLLLLAVIAAGVLAWVFIPSHETIGQKTLEQALNDDYSLVGHRIYSTDPDAGNRFGYFVLATGQSIEEQEPFLVTSDQFIRMEQTGDNTLSVTVNGRIYQYHNDLWVPKSDGKLQHFLVSATAKYVR
>NZ_CP013249.1|WP_005482916.1|68872_69634_+|2-dehydro-3-deoxy-D-gluconate-5-dehydrogenase-KduD
MILDSFNLEGKVAIVTGCDTGLGQGMALGLAKAGCDIVGVNISEPTETIEKVEAEGRKFVDIRANLMKLDDIPTIVDRAVTELGRIDILVNNAGIIRRNDAIEFSEQDWDDVMNINVKSVFFMSQAVAKQFIAQGEGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWASHGINVNAIAPGYMATNNTAALRADEQRNKEIVDRIPAARWGTPEDLAGPCVFLASKAADYINGYTIAVDGGWLAR
>NZ_CP013249.1|WP_005497706.1|69652_70177_+|YgjV-family-protein
MVDTTILAQALGFISFGLGFSVFYQKNDRHLKILMLIFNLNHLLHFLLLGSMVSALSALLSALRTTTAIFVSSKRVAAVFIVISLVSGFWVAEQWRDLWPIIGTVIGTYSVFCLSGIRMRIGFLLGASCWLTNNILVGSIGGTLLEMTVIVMNLLTIYRLHRQQSESMINQSSY
>NZ_CP013249.1|WP_005467181.1|70184_70505_+|cupin-domain-containing-protein
MFVFNQDIPMEDLGEGISRKVLAHSDNMMSVEVHFEEGAIGAMHSHPHEQLTYVLSGEFEFTIGDEKKIVKTGDTMYKEPNIEHGCVCLKAGVLIDTFTPMRKDFV
>NZ_CP013249.1|WP_005460779.1|70545_71181_+|RpiB/LacA/LacB-family-sugar-phosphate-isomerase
MKIALMMENSQAAKNAMVAGELNSVAGGLGHDVFNVGMTDENDHHLTYIHLGIMASILLNSKAVDFVVTGCGTGQGALMSCNLHPGVVCGYCLEPSDAFLFNQINNGNAISLAFAKGFGWAGELNVRYIFEKAFTGKRGEGYPIERAAPQQANAAILNNVKSAVAKDVVEGLRAIDQELVKTAVGSTQFQECFFAHCQVPEIAEYVKSLLD
>NZ_CP013249.1|WP_069502250.1|71258_72170_+|alpha/beta-hydrolase
MHVAPITSLQTWFPEHLVLPLWSEPQIPSHLVQSYQERNPNELLPDRAVFDITHPEIVVFEPEQSNGIGILLMPGGGYQRVSVDKEGADSARVLNQAGFTVFVMTYRMPNEGHEFGAWTPLADAQRAMRLVRQLPLASHLSSIGVLGFSAGGHVAASLATSHALDIYPLQDEADRVSAKPDFCALMYPVISMNTDIAHMGSRAELLANLEREPDLLRFSLEKQVTSDMPPCFLLHASDDTAVSVENSIVFWQALRQHEIATEMHLFEQGKHGFGIRDAQGLPVAAWPQLLSAWLQNLTEKARR
>NZ_CP013249.1|WP_005482884.1|72268_73198_+|sugar-kinase
MNPISRVAIIGECMVELKKHDGVLQQGFGGDTLNTAVYLSRLTKQHGVETSYVTGLGHDPFSREMLTAWREEGINTDMVYLSEDKLPGIYAIETAEDGERSFFYWRNDAAAKYWLRERALLSLVKDLCQHQMIYLSGISLAIISDDCRQMLIELLTMCRKEGVKIAFDNNFRPKLWPNIEQARDFYSKILSVTDMAFLTFDDEVMLWGDKHEDEAISRTKNFGVKEIIVKRGADDCFVVTQDQQHTVAALKVDAVVDTTAAGDSFSAGYLAKRILGGDVAESALAGHKVAGTVIQHRGAIIPSQAMPTI
>NZ_CP013249.1|WP_005460834.1|73209_73833_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MKDLNQQLSEIKVVPVIAIKDAGKAVKLAQVLIENGLPCAEVTFRTEDAALAIKNMREAYPEMLIGAGTVLTSAQVDEAIDAGVDFIVSPGFNPTTVKYCQQRNVTIVPGVNNPSLVEQAMEMGLRTLKFFPAEPSGGVAMLKALSAVYPVKFMPTGGVSPSNVKDYLSISSVLACGGTWMVPGDLIDNEQWDELAKLVREVAGIIE
>NZ_CP013249.1|WP_071652571.1|74018_75758_-|transporter
MTLLDSMIVMIYLLFIGIAASLFRRFSTSSNDFLQGGGTMMWWMAGATAFMTQFSAWTFTGAAAKAYEDGISVMFIFWGNALGFFVAAAFFARRYRRLRVETAMEVIRVRFGHTSEQLFTWLSFPLTLIACAIWMNGLASFFSAVFAIEMSTTILAMGVIVTLIAVSGGAWTVSVTNVIQLVLLIAITLVIGYTALQHFDSPSEVFAYTTPIYGEQIRMPSLFVMWAIAMLLQQTMSNNHTLSCYRFLTTANDKDATKAAFVAGVLFVFAPVLWFMPAWFVAAQNIDLLAIYPALEQSANNAAYLYYIQHYMPQGLLGLVMVALVAATIAPLSSAHNRNAGIVVKSLYQVWFNPTATSRQQLMVGKIATIVSGVLATVTALLLASVESYSLFDMMIVFAAFIQMPINIPSLLALVSLKTPNWSGWATVMVGCAVSLFMMFIFDVQWLSSSPLTPRESKDLSVVATLAVHLLVTGGFFLFTRVFYAKEPPSIQQSRTALAIQLATPISDEEQSPINHKQGLYVGSITALAGMLLILAGVVLAGSSQSIFVAIGCIVLLFSLFLLQPTLHSKRAWQKQKTK
>NZ_CP013249.1|WP_005482845.1|75887_76565_+|porin
MKVRYLTSALLLAMTSGLAAAASVDIRHEYVPDRDGDEHRDRIYVSHRFDNQIGFSVEAKWNYKDGHMGNAGHETGVSYRWKATDNFSLTPGINIDASPSGASVFKYNLTGAYKINDEWDVAARIRHGYKNTDDSRYNQLNLYANRKFEWGKLGVEAEYKDIHGGEGGWKDKGHDQLIDFKGEYTKLESGVIPFFAIAAITHKGDGSEFKDEYVPRFRVGLKYNF
>NZ_CP013249.1|WP_071652572.1|76580_78809_+|exopolygalacturonate-lyase
MKKHTLALCLAAILAPAAHAAEIKVEDLTWKAITFGQSTDMNFGSTILPEKVGVNQVTVNGEAVAAGKLASTFTIESRGGKLANSHEGLSFYYTELPTDVNFTLSADVVLEQLGPETGATPNRQEGAGLMVRDILGAERLVPQPEGHEEFPSASNMVMNLMRSHTRTNDGMTNINASFREGVYQPWGTPGNRLSRVDYVEGVPYGTAETYRMTLTRTNDGFNVSYRNGEKFVEQAVKGANANIVEMQNSDSQYVGFFASRNAKMTVSNVDLQLAAADTVDAPKYAAKQGELVFQIASSPRSATKEYPVQARANYSGEFEVLHNGKVVAKQTVTAGELFSQWLTLDSGANQMEVRFTAIDGPNKETQAHRYSVDVVSLPDPMTLYVAPNGSDKGNGSQAQPLDLATAVELLPAGGTIILKDGDYQGMEIPLTASGSVDKLKHLRAEGDNVRFVSELRHEANYWHYQGIEVAGAQFIVHGSHNTFEKMVTHGAPDTGFVITSPENIGRALWASYNQVIESESYNNMDPSQINADGFAAKMRIGDGNTFIRCLSHHNIDDGWDLFNKVEDGANGAVTILDSISFSNGRTLDVANKGGTIGNGFKLGGEGIPVPHVVKNSLSFNNNMDGFTDNFNPGALVLSDNVSIDNKRFNYLFRKSPYSGEIEQGTFTNNRSYRFHVSSKYDDVINSAKSTGNALVENGTTYTSDGKAVDSKTLAPLKQASVIDTQQAIPGKQEAMQLKQLIH

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Crispr_ID: NZ_CP013249_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013249_2

597373-597506

Orphan

Consensus_repeat	Method
GGCGGTCGTCGTGAAGGTGGTTTCCGTGGTAACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013249_2

>merge|NZ_CP013249|2|597373-597506|CRISPRCasFinder
GGTGGTCGCCGTGACGGTGGTCGTCGCGATGGCGGTCGTCGTGAAGGTGGTTTCCGTGGTAACCGCGAAGGTGGCAACCGTGGTGGTGAGCGTCGTGAAGGCGGTCGTCGTGAAGGTGGCTTCCGTGGTAACCG

>NZ_CP013249|2|2|597373-597506|CRISPRCasFinder
GGTGGTCGCCGTGACGGTGGTCGTCGCGATGGCGG	TCGTCGTGAAGGTGGTTTCCGTGGTAACCGCGAAGGTGGCAACCGTGGTGGTGAGCGTCGTGAA
GGCGGTCGTCGTGAAGGTGGCTTCCGTGGTAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013249.1\|WP_071652721.1\|605954_607559_-\|methylcrotonoyl-CoA-carboxylase	unknown	unknown	gnl\|CDD\|178415
NZ_CP013249.1\|WP_017448088.1\|592443_593247_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP013249.1\|WP_071652719.1\|604172_605075_-\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|180206
NZ_CP013249.1\|WP_005483343.1\|599451_599577_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013249.1\|WP_079750754.1\|584161_585088_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP013249.1\|WP_017448090.1\|597710_599312_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|238923
NZ_CP013249.1\|WP_005485953.1\|602681_603560_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP013249.1\|WP_005482632.1\|585118_587488_-\|arylsulfatase	unknown	unknown	gnl\|CDD\|293749
NZ_CP013249.1\|WP_079866543.1\|587495_588758_-\|anaerobic-sulfatase-maturase	unknown	unknown	gnl\|CDD\|188457
NZ_CP013249.1\|WP_011106305.1\|584058_584157_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013249.1\|WP_071652722.1\|607593_608763_-\|isovaleryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NZ_CP013249.1\|WP_017448089.1\|593318_595325_-\|exoribonuclease-II	unknown	unknown	gnl\|CDD\|179920
NZ_CP013249.1\|WP_071652720.1\|605071_605917_-\|gamma-carboxygeranoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|235664
NZ_CP013249.1\|WP_005462121.1\|591001_591829_-\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270371
NZ_CP013249.1\|WP_071652717.1\|588869_589823_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP013249.1\|WP_005487889.1\|590267_590948_+\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
NZ_CP013249.1\|WP_005483382.1\|599609_600803_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|183528
NZ_CP013249.1\|WP_071652718.1\|603585_604137_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227700
NZ_CP013249.1\|WP_079859522.1\|592040_592439_+\|DUF3024-domain-containing-protein	unknown	unknown	gnl\|CDD\|371425
NZ_CP013249.1\|WP_021452602.1\|601082_602396_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|206779

Protein	Function_ID	Function_description	E-value
NZ_CP013249.1\|WP_071652721.1\|605954_607559_-\|methylcrotonoyl-CoA-carboxylase	gnl\|CDD\|178415	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain.	0
NZ_CP013249.1\|WP_017448088.1\|592443_593247_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	6.54448e-25
NZ_CP013249.1\|WP_071652719.1\|604172_605075_-\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|180206	PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional.	3.04002e-172
NZ_CP013249.1\|WP_079750754.1\|584161_585088_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.13194e-26
NZ_CP013249.1\|WP_017448090.1\|597710_599312_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	7.19213e-91
NZ_CP013249.1\|WP_005485953.1\|602681_603560_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	5.12613e-12
NZ_CP013249.1\|WP_005482632.1\|585118_587488_-\|arylsulfatase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NZ_CP013249.1\|WP_079866543.1\|587495_588758_-\|anaerobic-sulfatase-maturase	gnl\|CDD\|188457	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme. Members of this protein family are radical SAM family enzymes, maturases that prepare the oxygen-sensitive radical required in the active site of anaerobic sulfatases. This maturase role has led to many misleading legacy annotations suggesting that this enzyme maturase is instead a sulfatase regulatory protein. All members of the seed alignment are radical SAM enzymes encoded next to or near an anaerobic sulfatase. Note that a single genome may encode more than one sulfatase/maturase pair. [Protein fate, Protein modification and repair].	0
NZ_CP013249.1\|WP_071652722.1\|607593_608763_-\|isovaleryl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NZ_CP013249.1\|WP_017448089.1\|593318_595325_-\|exoribonuclease-II	gnl\|CDD\|179920	PRK05054, PRK05054, exoribonuclease II; Provisional.	0
NZ_CP013249.1\|WP_071652720.1\|605071_605917_-\|gamma-carboxygeranoyl-CoA-hydratase	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	3.49604e-97
NZ_CP013249.1\|WP_005462121.1\|591001_591829_-\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270371	cd13653, PBP2_phosphate_like_1, Substrate binding domain of putative ABC-type phosphate transporter, a member of the type 2 periplasmic binding fold superfamily. This subfamily contains uncharacterized phosphate binding domains found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.95335e-86
NZ_CP013249.1\|WP_071652717.1\|588869_589823_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.17018e-30
NZ_CP013249.1\|WP_005487889.1\|590267_590948_+\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	7.87357e-69
NZ_CP013249.1\|WP_005483382.1\|599609_600803_+\|acetate-kinase	gnl\|CDD\|183528	PRK12440, PRK12440, acetate/propionate family kinase.	0
NZ_CP013249.1\|WP_071652718.1\|603585_604137_+\|hypothetical-protein	gnl\|CDD\|227700	COG5413, COG5413, Uncharacterized integral membrane protein [Function unknown].	2.25101e-25
NZ_CP013249.1\|WP_079859522.1\|592040_592439_+\|DUF3024-domain-containing-protein	gnl\|CDD\|371425	pfam11225, DUF3024, Protein of unknown function (DUF3024). This family of proteins has no known function.	5.7906e-20
NZ_CP013249.1\|WP_021452602.1\|601082_602396_+\|PAS-domain-S-box-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	4.42117e-45

>NZ_CP013249.1|WP_017448089.1|593318_595325_-|exoribonuclease-II
MFQDNPLLAQLKQQIQENLPKKEGSIKATDKGFGFLEVDSKTSFFIPPAYMKKCIHGDKVVAIIRTENEREVAEPQELIEQSLTRFIGRVKMFKGKLNVVPDHPQLKKLSLKAKLKKGLKPDNFAEGDWVVAHLVRHPLKGDNTFFVEISEKITDADDKIAPWWVTLAQNDLPNSEPAGIENWELKDDADLERIDMTHVPFVTIDGESTKDMDDALYAKKTESGDFELTIAIADPTAYITPEDEMDKVARERGYTIYLPGRNIPMLPRDLADNLCSLIEGEIRPAICCTVTVSKDGVIGDDIKFFAANIKSHARLAYDHVSDWLENGNSDAWQPSEEIATIVRDLYEFSLARAEWREKNAVVFPDRPDYRFELSEDNDVIAIHADMRRSANRLVEESMITANICAGRTLREKFETGVFNTHAGLKPEKIEEVVQLVNPEGTLEFTAESIATLEGFAALRRWLAVQETSYLDNRIRKFQAYSEVGNQPLPHYAMGLDIYATWTSPIRKYGDMINHRMLKAVILDKEPVQKPDDQVGEELALHRKHHKIAERNVSDWLYARTLADEPSKQTCFTGEIFDINRAGARVRLLENGAAAFIPGALILDNKERIECNGDNGTISIDKEVVYKLGDTLEIVLADVNQENRSLVAKPTQVFADQPAAQTEQTVSEE
>NZ_CP013249.1|WP_017448088.1|592443_593247_-|helix-turn-helix-transcriptional-regulator
MPNIEIIRFNHFTARKSERYTATHNGLYVVEEGALVVHQPNGEQFELQAGDFTLYNSSDLRSAEAIPGENGFKAVALVFDISLFCEFKKAHPGLHSEAEHRRFYPFSPESNSEITQLKNTLLALASRNAPDYTQSHIAMALLSLMVEVQPDILSIIDDASSLTASQKAIKYIEKNIEKDITLEGLAAHMSMSIATLKRRLAAENLSFSQILKVKRINYAATQLRVSQKSITEIAFESGFKSAAHFSTAFKSIYNITPKDFRNQVVRG
>NZ_CP013249.1|WP_079859522.1|592040_592439_+|DUF3024-domain-containing-protein
MVLGCILKTTYQENVMSVSQMATSRLYKLVQILCSARNANLPVEQGKCLYEPIENGVELHHAHFLLDSQHSEYTSPIAKILFDSQTQLWRFYVPASRSEEIRWIPYKKLPHSHTLEDLLAELESDPQACFWE
>NZ_CP013249.1|WP_005462121.1|591001_591829_-|phosphate-ABC-transporter-substrate-binding-protein
MLRFTVATLLAMAVSLPSAMAKEVNISGSTSVARVMDVLAEEYNKTHPDNYIAVQGIGSSAGITMVNKGVVKLGMSSRYLTESEKGEDLNVFPIAYDGLAVVVNRTNSVTNLSAQQLFDIYKGEIKNWKEVGGADQPIAVVTREASSGSRYSFESLLGLTKIINDRLVSDISPNNLVVNSNSMVKTIVNHNTRAIGFISVGSVDLSVKAIQFNGIEPTAANIANHKYKLARPFLVLYKVDSLDQAGKDFVAFLKSEAGQKTIADYGYIPVKNFNQ
>NZ_CP013249.1|WP_005487889.1|590267_590948_+|MaoC-family-dehydratase
MKVTNLFKDKVDAISAHQSEFMNWMSPTLRDYWSDFLGKAQNSFLFSNVRDHNQPAVNEEVAPQPAPIVLQPEAQKLYDELIGKIGEVIHTGDWVHVSQERINQFGAVTEDMQWIHTDPERASVESPFKTTIAHGFLTLALLPKLTDSVDADKPLFPTAKLVVNLGLNQVRFPYPVKAGNNVRAVSTLTKVTPIKKGLEIEREIKVEIEGVRRPGAVVVSVIQLHF
>NZ_CP013249.1|WP_071652717.1|588869_589823_+|LysR-family-transcriptional-regulator
MIFNYNLLKPLALLLETKSITATANQMSTSASAVSRTLRSLREIFQDELLTRKNGRMELTPKAISIRAKLNNIIHDIDELTEDMSFDPSTSDIKINIAMNSYIAYWLAPEIIQYFSENAPNIELTIEDWNELTPDRINNHIVHFGIHYFPLNLNKNLVQRKVGKDMSVMVCRKDHPINNESISLETIASYPLAIHLQKHWNERQDKLSRLLLSHGIDFKVKLKTTHINVIINAVETTDLLFPCSIYIAEQLGEKFSYITSSDEVFLPLQEKEFGFIYDKAYKNDPMIVWLHSTISKLMNDFLDVYNNQFDSRYEKSR
>NZ_CP013249.1|WP_079866543.1|587495_588758_-|anaerobic-sulfatase-maturase
MVGVEEFLMAGLHTTVKVVGSKCNYDCQYCFYLEKDLLLKSKKSMNIETLETYIKNYISSQDTPIVEFAWHGGEPTLIGIDFFEKAVEFQKQYANGKLIKNTIQTNGSKLNSDWCRFFRENNFLVGLSLDGPEWLQEKYRTKQGKSAFKESFSALKLLQKMNVEYNVLACVTKEYCKHAEAIYSFFRKNKVKHIQFSPLVESSPSQTEQARGQHFGSNLIFSTDKRHTDPQKYEPIAWSVDAKEYGRFLTDVFHLWVSQDVGKVFISNFEQALTQYLGNPSPNCIHAKKCGSSYAVEANGDVYFCDHVAYPESKLGNVFETSLHEMSLNHELQFNKESRLSVRCKQCQFLSLCNGGCPKHRYLSDTGEHENVLCDGYFYFFSSVEKYLQAMTTLLAHGYPASYVMQALDGPLILTPSNKR
>NZ_CP013249.1|WP_005482632.1|585118_587488_-|arylsulfatase
MDILKTTVTITGALAPCLVAAGTVDRTKLPIPDIEPQTYTQLDVRDVQRPEPTRRIAAPKDAPNVLVILLDDVGFSQSSLFGGAVDMPTLDALAKQGLIYNQFHTTGVSSATRTALLTGRNHHQNNMGSIAETSTAFPGNTSVRPNYIAALPKILKYNGYSTAMFGKNHEIPAWETGPAGNQTLWPSEVGFDKFYGFFGGETDQFQPVLIDGNTRIKTPRKKNYHFTADMTDQTIKWLNLQHSYNADQPFFAYYAPGAAHAPHQAPREWIDKFKGKFSMGWDKLRQESFERQKKLGIIPQDTVLPPMPDFVPRWDSLSSDEKRVFERQMEVYAGFLAHTDHEIGRVIDTLKKNGEFDNTLIFYIVGDNGASAEGNRNGSFNSLAFYNLITEDPNRVLENIDKLGGPDSFPHYASGWAVAGDSPFTWTKGMSSDFGGTRNGMVVSWPAGIDNKGQPLRDQWSHVVDIAPTVLEAANLPVPKEVDGVEQIPMAGVSFTNTFKETKAQTRHKPQYFELGGNRAIYHEGWLARVTHWALTEGSTKFRDLQDDKWELYDTTKDFSLANDLAKSNPQKLEELKKLFDKEAEKNHVYPIDDRTMERVNAEIAGRPDALFGKKSLTLYEGARGIPENSFLNIKNKSFDIVADISTDNASKTNGVIIAQGGNFGGWTLYVKNGVPTFEYNWLTYEYTKVSGSKLKEGKNEIKVAFRYDENGQGGKGNAAGRGKGGNVYLYVNDKLVEKKLIPNTNSRLFSLDDGVGIGEDEGGAVSKDYQAPFEFNQKIEQVTTSIVQ
>NZ_CP013249.1|WP_079750754.1|584161_585088_-|LysR-family-transcriptional-regulator
MAQESLRTPVDFPNNSLLEFKMSKAIDLNLINTFIVVTECLSYTKAADKLGVTQPAISASIKRLERTTNTKLFTKRGRNIELTSTAQKWLPQLQQALSVIDSVITQPAPYNVYCSNIYPAQQSKLENVFFHESTLSENHLFSLLYSNEADLLLGDIESREASIIVEDVCREPCVVICRNGHPRIDEHISTEMLSDEKHCVLASKWSFDTEFEKHLGLIVKSNNIDSIASNYLGILTHVAQNDCIGVIPLSLAKKWGKTFNIKHFTSPLGACFIQYQIAYHQRKVNCKRHGAMRALIKSKVLEGQQRII
>NZ_CP013249.1|WP_011106305.1|584058_584157_-|hypothetical-protein
MIPPYFSTDFIDKKAVVHQRLSFHFHCFNTTD
>NZ_CP013249.1|WP_017448090.1|597710_599312_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MPTIAFLLVILGLILLCWGWQMTKNICSKTEVPGWTWLLMLISCFIFAYAAFLHAIMKKPVASLLETGVSLLLFGGSIFVVLVIKWSNDSILELHSVAEREKRNAVHDSLTGLPNRKYCFELIDDRIQSGDPFSVILFDVVNFKQVNDAMGHFCGDQLLIQIGQRLQDKLKGNDKIFRVGGDEFVILTSSACEKTGTELIESLDCALSARFHLDEFQVSSRVVFGISTYPYDAISNDLLIKHADIAMYHAKRNGNLFAFYHDDMNVGAKYQLEISSRIQCALEKEEFQLYYQPLIDANTNLAVGFEAVIRWHDENGKTISPNDFIPIAERSNQVHNITMWVLGQVEKDLKTFIEKGIKLPVHVNLSAKDLSSNLLFHRLEKLLENNPQFADLISLEITETMAIDRVVELNPLIHQIKGLGIKISLDDFGTGYSSLSLLRDLPVDQIKIDRSFLCTANRTEGSRSIVENTIALAHGLGYSVVAEGVQDMDTLYFLRSRGCDIIQGYLFCPALPLNEVINWVNEHDDKQSHTRRA
>NZ_CP013249.1|WP_005483343.1|599451_599577_-|hypothetical-protein
MRFRAAYFLFAPLLFNNFLIFQQSFSESDLIEQILLIYSKF
>NZ_CP013249.1|WP_005483382.1|599609_600803_+|acetate-kinase
MSNSFVLVINSGSSSLKFAVIDSVSGDAVLSGLGECFGLSDARMSWKFNGEKKEISIEGDDSHHKIAIGKLVGLTEELGLAQDIVAVGHRIVHGGEKFTKTVRITEEVTQEIEKLADLAPLHNPAGAIGIRAAVEAFPSLPQFAVFDTAFHQTMPQRAFTGAIAKELYTDFGIRRYGFHGTSHYFVSREAAKMINKPIEESSFISVHLGNGASVCAINNGESVDTSMGFTPLSGLMMGTRCGDLDPGIIEYLLKKGWSQEKVFNSLNKASGFLGVSGLTSDARGILEAMEEGHEGAALAFQVFTYRVSKYIASYLAALDSFDGIIFTGGIGENSMPIRREILKNLKLLGFVEDVKGNEDARFGNAGVIATSELLGAKALVIPTNEEWVIAQQSVELL
>NZ_CP013249.1|WP_021452602.1|601082_602396_+|PAS-domain-S-box-protein
MFFNKSLQQENQRLKQELYSLQQIQQSLDEEMLRLTLDAKGNVTSANQKFLQQLSLSDKDILAKHISDLVPSNVRNTDHFYRMKQSVQAKAFWNGAFQITKGDGEEAWLRVVIQPVRNTSDQVESFFVFASELTRTITTSREYEDMLNALSRSMAVIEFTLDGTVLKANDNFLSTTGYKHEQIVGKHHRIFCLPEEANSSAYHDFWKRLASGQFVTDRFKRVDQYGSVVWLEASYNPIHNDRGELYKVVKFATNITQQVLQEQSMAQAAQLANEVSQETGTQTVQGRQVIGSTLEKMQTLSEQMQQANAAIEDLKAHSSKISELVNSISGIADQTNLLALNAAIEAARAGDHGRGFAVVADEVRQLAMRTNTTTDEIVSMVTENLERTNNAVALISQCQKEALDTLELSEKAGNVMNDIQDGASRVVEAVAQFNRTL
>NZ_CP013249.1|WP_005485953.1|602681_603560_+|DMT-family-transporter
MFNSERKATVILVATTMIAALGWIFSKETIQGLPPFGFIGLRFTIASLCLLPLCYRPLKAARLKDVLAASGVGLLLGGAVMTWIYAISISDTLGEGAFIMSLSMLFVPIVAWVMFQQRPQRIFWISLPIAVIGLACLSLAGGWKQSASQLWFLGAALILALHFNVNSKYSQKLPVLLLTCVQLFSAGCLGLLVSFLMESRPEQVDSSIWWWFALSTLLATSLRYVMQTMGQKFVQAGNAALIMILEPVWTVVLSILWYGEVLTANKLVGCLLILFSLVIYRTGGRFRFPKRA
>NZ_CP013249.1|WP_071652718.1|603585_604137_+|hypothetical-protein
MANTEHQETLDFLDKLSVCLYRAGISVFAIALLGLAALESQWLDGMDGRYRAVFAVFTIAGAMSASNIHVYSKSVRTIISWSGWIGVILMVCDPELNREWLALGFIFVTFSGIALKESFCFKVLGLKLVPTLLVVTTFALWFEQSTIVAISALLAALIMAYLSIAKWRMPLHFDIGIKANYEV
>NZ_CP013249.1|WP_071652719.1|604172_605075_-|hydroxymethylglutaryl-CoA-lyase
MTLPTNVNIVEVGPRDGLQHESPVSARTKIRLIDLLSDTGLSHIEAGSFVSPKWVPQMADSKEVMQNITRRASVTYSALTPNLQGLEQALDAGANQVAIFTAASEGFCQHNINCSITESLKRFEPLMVQADKYHVPVRGYLSCVVDCPYDGATSPTQVANISQALIELGCYEVSLGDTIGTGTPNRVKEMLESVLARIPSQRLAVHFHDTWGQALANIYQALCMGINTVDSSVAGLGGCPYAHGASGNVATEDVLYLCQGLSIETGVDLELLAIAGWMISDELQRQPTSKVSQALRHRME
>NZ_CP013249.1|WP_071652720.1|605071_605917_-|gamma-carboxygeranoyl-CoA-hydratase
MQERQPSIVPNAQRHNDVLWQVDEFGVATLTLNRTKKHNAFDACMIDLIIHRLDYLALRTDVRCLLLRSNGKHFSSGADLAWMQSMANSTRKENLVDAQSLARLMETLDAFPQPTIAVVQGSAFGGALGLICCSDIAIASHSAQFCLSEVKLGLVPATIAPYVMRAMGNRQARRYILSGEVIPAVKAQQFGIVHEVKEDDELESCVSEVVASLLLNSPDAMRKAKALCEQCHQNPIDSQLIRYTSQLIADIRVSPQGQDGLQAFLEKRPPSWVHQPDAEEE
>NZ_CP013249.1|WP_071652721.1|605954_607559_-|methylcrotonoyl-CoA-carboxylase
MAIIKSKTKPTDELFLSNQAAMEMLVEKLQKDVATIKLGGGERAIAHQRQKGKLPVRERISHLLDDGSNFLEIGQFAAWQVYDESIPCAGVVAGIGIIEGVQCMVIANDPSVKGGTYYPLTVKKHLRAQEIAQRCQLPCVYLVDSGGANLPHQSDVFPDKDHFGRIFFNQARMSAKGIPQIAVVMGLCTAGGAYVPAMADVSIMVKEQGTIFLAGPPLVKAATGEIVTGEELGGADVHCRKSGVADYYAENDEHALDLAREAIANANRPKPPKSDSAILPPRYDAEEMYGIVNANLRLSFDVREIIARIVDDSDFDEFKALYGRTLVCGFARIHGQLIGIVANNGILFSDSSQKGAHFIELCAKRKTPLLFLQNITGFMVGKKVEEEGIAKHGAKLVMAVACADVPKFTVIIGGSYGAGNYGMCGRAYDPTMMWMWPNARISVMGGEQAAGVLTQVRKEINQRRGEEWSEQEEHTFKESIIDLYETQGHPYFASARLWDDGIIDPKETRNVLAQALMAALNAPIPDSEFGIFRM
>NZ_CP013249.1|WP_071652722.1|607593_608763_-|isovaleryl-CoA-dehydrogenase
MKTSYIPLNFGLGETIDMLRDHVNAFASEHIAPIAADIDHYNQFPSHLWPLLGEMGLLGVTVSEEYGGAEMGYLAHVVAMEEVSRASASVALSYGAHSNLCVNQIFRNGTPTQREKYLPKLVDGSHIGALAMSEVNSGSDVVSMQLKAEDKGDHFLLNGTKMWITNGPDADVVVVYAKTDAEAGSRGITAFIVERSFTGFSDAQKLDKLGMRGSNTSELVFNNCKVPKENILGALNCGVEVLMSGLDYERVVLAAGPLGIMQACMDIVVPYVHERKQFGKSIGKFQLVQGKLADMYSRMNSAKAYVYTVAAACDRGECTRKDAAGVILYSAELATQMALDAIQLLGGNGYINEYATGRLLRDAKLYEIGAGTSEIRRMLIGRELFEESR

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Crispr_ID: NZ_CP013249_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013249_3

826587-828294

TypeI-F

I-F

Consensus_repeat	Method
GTTAACTGCCACACAGGCAGCTTAGAAA	PILER-CR
GTTAACTGCCACACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTAACTGCCACACAGGCAGCTTAGAAA	CRT

28 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP013249_3

>merge|NZ_CP013249|3|826587-828294|PILER-CR,CRISPRCasFinder,CRT
GTTAACTGCCACACAGGCAGCTTAGAAACTTGGATTTCTGAAAGGTAATGACGGCTTTCTGTTAACTGCCACACAGGCAGCTTAGAAAAATGTCGCGCATAGCCTCGATAGTTTCGACAGGTTAACTGCCACACAGGCAGCTTAGAAAAAAGTGACGAAGATTATTCAAAGCTCCATCCCGTTAACTGCCACACAGGCAGCTTAGAAAAAAGCCAAAAGGCGCGTGAAGTGTCGAGAAGTGTTAACTGCCACACAGGCAGCTTAGAAAACAGAGTGAAAATAGTCCCGACGATGCCGCCAGTTAACTGCCACACAGGCAGCTTAGAAATCCATCTCCGGCCAATAAGACCAGTATTCAACGTTAACTGCCACACAGGCAGCTTAGAAAAGAAAGTAAATCCTCAAGAGATAGAGATTCATGTTAACTGCCACACAGGCAGCTTAGAAAACCGAGGAAAGTCAGTGGACTCAGAACGGGTTGTTAACTGCCACACAGGCAGCTTAGAAATGAATACGGCGATAAAAACGGTAGATTACATTGTTAACTGCCACACAGGCAGCTTAGAAAAAATAAAGTGGCAGATACCAGCTCAGTTTGCCGTTAACTGCCACACAGGCAGCTTAGAAAGTATGTAAATGGCTGCGCTACAAGACAGATATGTTAACTGCCACACAGGCAGCTTAGAAAATTCGCAAACCTTGCGCTATTTGGGTTTGTTCGTTAACTGCCACACAGGCAGCTTAGAAAAGACACTAGACCTGTTCAGGGTGAGCATGAGCGTTAACTGCCACACAGGCAGCTTAGAAAAACAGGGAGAATATAAAAATACTGCCGATAACGTTAACTGCCACACAGGCAGCTTAGAAAAGAAAATGAAAAATGTCTCCGTTTTTTAAATCGTTAACTGCCACACAGGCAGCTTAGAAATTGTTCAAATGGGAGCAGCAGGAACTACGCAGTTTAACTGCCACACAGGCAGCTTAGAAAACAGCATTAGGCACTACAGATTTAAACGATTTGTTAACTGCCACACAGGCAGCTTAGAAATCCAAAGGACTTTAATTAAGAGTGGTGAATACGTTAACTGCCACACAGGCAGCTTAGAAAAGGTAATCATGTGTCGCATTCATTACCTCCGCGTTAACTGCCACACAGGCAGCTTAGAAAAGAAAGTAAATCCTCAAGAGATAGAGATTCATGTTAACTGCCACACAGGCAGCTTAGAAAACCGAGGAAAGTCAGTGGACTCAGAACGGGTTGTTAACTGCCACACAGGCAGCTTAGAAATGAATACGGCGATAAAAACGGTAGATTACATTGTTAACTGCCACACAGGCAGCTTAGAAATGGTTGCGTCACGCTCTGGTATTGCTGCTCTGGTTAACTGCCACACAGGCAGCTTAGAAAAATCTTTGCGGAACTCTTCAAAATCTTCAAACGTTAACTGCCACACAGGCAGCTTAGAAAATTCGCAAACCTTGCGCTATTTGGGTTTGTTCGTTAACTGCCACACAGGCAGCTTAGAAAATACTCAGGCTTCTGGCCAGAAGCGAAAACCAGTTAACTGCCACACAGGCAGCTTAGAAAAAACCTTCCTAGTAAAATTATCGCCAGCATAAGTTAACTGCCACACAGGCAGCTTAGAAAAAGAACGCTTAGAACGACGTTTAGACATTTTTGTTAACTGCCACACAGGCAGCTTAGAGA

>NZ_CP013249|3|1|826587-828294|PILER-CR
GTTAACTGCCACACAGGCAGCTTAGAAA	CTTGGATTTCTGAAAGGTAATGACGGCTTTCT
GTTAACTGCCACACAGGCAGCTTAGAAA	AATGTCGCGCATAGCCTCGATAGTTTCGACAG
GTTAACTGCCACACAGGCAGCTTAGAAA	AAAGTGACGAAGATTATTCAAAGCTCCATCCC
GTTAACTGCCACACAGGCAGCTTAGAAA	AAAGCCAAAAGGCGCGTGAAGTGTCGAGAAGT
GTTAACTGCCACACAGGCAGCTTAGAAA	ACAGAGTGAAAATAGTCCCGACGATGCCGCCA
GTTAACTGCCACACAGGCAGCTTAGAAA	TCCATCTCCGGCCAATAAGACCAGTATTCAAC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGAAAGTAAATCCTCAAGAGATAGAGATTCAT
GTTAACTGCCACACAGGCAGCTTAGAAA	ACCGAGGAAAGTCAGTGGACTCAGAACGGGTT
GTTAACTGCCACACAGGCAGCTTAGAAA	TGAATACGGCGATAAAAACGGTAGATTACATT
GTTAACTGCCACACAGGCAGCTTAGAAA	AAATAAAGTGGCAGATACCAGCTCAGTTTGCC
GTTAACTGCCACACAGGCAGCTTAGAAA	GTATGTAAATGGCTGCGCTACAAGACAGATAT
GTTAACTGCCACACAGGCAGCTTAGAAA	ATTCGCAAACCTTGCGCTATTTGGGTTTGTTC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGACACTAGACCTGTTCAGGGTGAGCATGAGC
GTTAACTGCCACACAGGCAGCTTAGAAA	AACAGGGAGAATATAAAAATACTGCCGATAAC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGAAAATGAAAAATGTCTCCGTTTTTTAAATC
GTTAACTGCCACACAGGCAGCTTAGAAA	TTGTTCAAATGGGAGCAGCAGGAACTACGCAG
TTTAACTGCCACACAGGCAGCTTAGAAA	ACAGCATTAGGCACTACAGATTTAAACGATTT
GTTAACTGCCACACAGGCAGCTTAGAAA	TCCAAAGGACTTTAATTAAGAGTGGTGAATAC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGGTAATCATGTGTCGCATTCATTACCTCCGC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGAAAGTAAATCCTCAAGAGATAGAGATTCAT
GTTAACTGCCACACAGGCAGCTTAGAAA	ACCGAGGAAAGTCAGTGGACTCAGAACGGGTT
GTTAACTGCCACACAGGCAGCTTAGAAA	TGAATACGGCGATAAAAACGGTAGATTACATT
GTTAACTGCCACACAGGCAGCTTAGAAA	TGGTTGCGTCACGCTCTGGTATTGCTGCTCTG
GTTAACTGCCACACAGGCAGCTTAGAAA	AATCTTTGCGGAACTCTTCAAAATCTTCAAAC
GTTAACTGCCACACAGGCAGCTTAGAAA	ATTCGCAAACCTTGCGCTATTTGGGTTTGTTC
GTTAACTGCCACACAGGCAGCTTAGAAA	ATACTCAGGCTTCTGGCCAGAAGCGAAAACCA
GTTAACTGCCACACAGGCAGCTTAGAAA	AAACCTTCCTAGTAAAATTATCGCCAGCATAA
GTTAACTGCCACACAGGCAGCTTAGAAA	AAGAACGCTTAGAACGACGTTTAGACATTTTT
GTTAACTGCCACACAGGCAGCTTAGAGA

>NZ_CP013249|3|3|826587-828294|CRISPRCasFinder
GTTAACTGCCACACAGGCAGCTTAGAAA	CTTGGATTTCTGAAAGGTAATGACGGCTTTCT
GTTAACTGCCACACAGGCAGCTTAGAAA	AATGTCGCGCATAGCCTCGATAGTTTCGACAG
GTTAACTGCCACACAGGCAGCTTAGAAA	AAAGTGACGAAGATTATTCAAAGCTCCATCCC
GTTAACTGCCACACAGGCAGCTTAGAAA	AAAGCCAAAAGGCGCGTGAAGTGTCGAGAAGT
GTTAACTGCCACACAGGCAGCTTAGAAA	ACAGAGTGAAAATAGTCCCGACGATGCCGCCA
GTTAACTGCCACACAGGCAGCTTAGAAA	TCCATCTCCGGCCAATAAGACCAGTATTCAAC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGAAAGTAAATCCTCAAGAGATAGAGATTCAT
GTTAACTGCCACACAGGCAGCTTAGAAA	ACCGAGGAAAGTCAGTGGACTCAGAACGGGTT
GTTAACTGCCACACAGGCAGCTTAGAAA	TGAATACGGCGATAAAAACGGTAGATTACATT
GTTAACTGCCACACAGGCAGCTTAGAAA	AAATAAAGTGGCAGATACCAGCTCAGTTTGCC
GTTAACTGCCACACAGGCAGCTTAGAAA	GTATGTAAATGGCTGCGCTACAAGACAGATAT
GTTAACTGCCACACAGGCAGCTTAGAAA	ATTCGCAAACCTTGCGCTATTTGGGTTTGTTC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGACACTAGACCTGTTCAGGGTGAGCATGAGC
GTTAACTGCCACACAGGCAGCTTAGAAA	AACAGGGAGAATATAAAAATACTGCCGATAAC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGAAAATGAAAAATGTCTCCGTTTTTTAAATC
GTTAACTGCCACACAGGCAGCTTAGAAA	TTGTTCAAATGGGAGCAGCAGGAACTACGCAG
TTTAACTGCCACACAGGCAGCTTAGAAA	ACAGCATTAGGCACTACAGATTTAAACGATTT
GTTAACTGCCACACAGGCAGCTTAGAAA	TCCAAAGGACTTTAATTAAGAGTGGTGAATAC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGGTAATCATGTGTCGCATTCATTACCTCCGC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGAAAGTAAATCCTCAAGAGATAGAGATTCAT
GTTAACTGCCACACAGGCAGCTTAGAAA	ACCGAGGAAAGTCAGTGGACTCAGAACGGGTT
GTTAACTGCCACACAGGCAGCTTAGAAA	TGAATACGGCGATAAAAACGGTAGATTACATT
GTTAACTGCCACACAGGCAGCTTAGAAA	TGGTTGCGTCACGCTCTGGTATTGCTGCTCTG
GTTAACTGCCACACAGGCAGCTTAGAAA	AATCTTTGCGGAACTCTTCAAAATCTTCAAAC
GTTAACTGCCACACAGGCAGCTTAGAAA	ATTCGCAAACCTTGCGCTATTTGGGTTTGTTC
GTTAACTGCCACACAGGCAGCTTAGAAA	ATACTCAGGCTTCTGGCCAGAAGCGAAAACCA
GTTAACTGCCACACAGGCAGCTTAGAAA	AAACCTTCCTAGTAAAATTATCGCCAGCATAA
GTTAACTGCCACACAGGCAGCTTAGAAA	AAGAACGCTTAGAACGACGTTTAGACATTTTT
GTTAACTGCCACACAGGCAGCTTAGAGA

>NZ_CP013249|3|1|826587-828294|CRT
GTTAACTGCCACACAGGCAGCTTAGAAA	CTTGGATTTCTGAAAGGTAATGACGGCTTTCT
GTTAACTGCCACACAGGCAGCTTAGAAA	AATGTCGCGCATAGCCTCGATAGTTTCGACAG
GTTAACTGCCACACAGGCAGCTTAGAAA	AAAGTGACGAAGATTATTCAAAGCTCCATCCC
GTTAACTGCCACACAGGCAGCTTAGAAA	AAAGCCAAAAGGCGCGTGAAGTGTCGAGAAGT
GTTAACTGCCACACAGGCAGCTTAGAAA	ACAGAGTGAAAATAGTCCCGACGATGCCGCCA
GTTAACTGCCACACAGGCAGCTTAGAAA	TCCATCTCCGGCCAATAAGACCAGTATTCAAC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGAAAGTAAATCCTCAAGAGATAGAGATTCAT
GTTAACTGCCACACAGGCAGCTTAGAAA	ACCGAGGAAAGTCAGTGGACTCAGAACGGGTT
GTTAACTGCCACACAGGCAGCTTAGAAA	TGAATACGGCGATAAAAACGGTAGATTACATT
GTTAACTGCCACACAGGCAGCTTAGAAA	AAATAAAGTGGCAGATACCAGCTCAGTTTGCC
GTTAACTGCCACACAGGCAGCTTAGAAA	GTATGTAAATGGCTGCGCTACAAGACAGATAT
GTTAACTGCCACACAGGCAGCTTAGAAA	ATTCGCAAACCTTGCGCTATTTGGGTTTGTTC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGACACTAGACCTGTTCAGGGTGAGCATGAGC
GTTAACTGCCACACAGGCAGCTTAGAAA	AACAGGGAGAATATAAAAATACTGCCGATAAC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGAAAATGAAAAATGTCTCCGTTTTTTAAATC
GTTAACTGCCACACAGGCAGCTTAGAAA	TTGTTCAAATGGGAGCAGCAGGAACTACGCAG
TTTAACTGCCACACAGGCAGCTTAGAAA	ACAGCATTAGGCACTACAGATTTAAACGATTT
GTTAACTGCCACACAGGCAGCTTAGAAA	TCCAAAGGACTTTAATTAAGAGTGGTGAATAC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGGTAATCATGTGTCGCATTCATTACCTCCGC
GTTAACTGCCACACAGGCAGCTTAGAAA	AGAAAGTAAATCCTCAAGAGATAGAGATTCAT
GTTAACTGCCACACAGGCAGCTTAGAAA	ACCGAGGAAAGTCAGTGGACTCAGAACGGGTT
GTTAACTGCCACACAGGCAGCTTAGAAA	TGAATACGGCGATAAAAACGGTAGATTACATT
GTTAACTGCCACACAGGCAGCTTAGAAA	TGGTTGCGTCACGCTCTGGTATTGCTGCTCTG
GTTAACTGCCACACAGGCAGCTTAGAAA	AATCTTTGCGGAACTCTTCAAAATCTTCAAAC
GTTAACTGCCACACAGGCAGCTTAGAAA	ATTCGCAAACCTTGCGCTATTTGGGTTTGTTC
GTTAACTGCCACACAGGCAGCTTAGAAA	ATACTCAGGCTTCTGGCCAGAAGCGAAAACCA
GTTAACTGCCACACAGGCAGCTTAGAAA	AAACCTTCCTAGTAAAATTATCGCCAGCATAA
GTTAACTGCCACACAGGCAGCTTAGAAA	AAGAACGCTTAGAACGACGTTTAGACATTTTT
GTTAACTGCCACACAGGCAGCTTAGAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013249.1\|WP_071653092.1\|816858_817224_+\|DUF202-domain-containing-protein	unknown	unknown	unknown
NZ_CP013249.1\|WP_131168624.1\|828656_828998_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013249.1\|WP_017447668.1\|837139_838567_+\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP013249.1\|WP_071653091.1\|814984_816463_+\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293757
NZ_CP013249.1\|WP_071652787.1\|823851_824745_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP013249.1\|WP_071652783.1\|813942_814755_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP013249.1\|WP_017447671.1\|831047_832256_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|225968
NZ_CP013249.1\|WP_079866552.1\|822583_823855_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP013249.1\|WP_021452719.1\|824756_825788_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP013249.1\|WP_071652791.1\|833745_837060_+\|DUF5107-domain-containing-protein	unknown	unknown	gnl\|CDD\|375006
NZ_CP013249.1\|WP_071652789.1\|829242_830901_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP013249.1\|WP_071652785.1\|818229_819207_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP013249.1\|WP_071652786.1\|819203_822584_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP013249.1\|WP_071652790.1\|832373_833321_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226480
NZ_CP013249.1\|WP_071652792.1\|841220_843416_+\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|236505
NZ_CP013249.1\|WP_071652784.1\|816518_816875_+\|DUF202-domain-containing-protein	unknown	unknown	gnl\|CDD\|225060
NZ_CP013249.1\|WP_071652793.1\|843507_844683_+\|YibE/F-family-protein	unknown	unknown	gnl\|CDD\|377940
NZ_CP013249.1\|WP_025522392.1\|839684_840914_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP013249.1\|WP_021452720.1\|825797_826436_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870
NZ_CP013249.1\|WP_017447667.1\|838642_839545_-\|aldose-1-epimerase	unknown	unknown	gnl\|CDD\|185698

Protein	Function_ID	Function_description	E-value
NZ_CP013249.1\|WP_025522392.1\|839684_840914_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	8.90324e-43
NZ_CP013249.1\|WP_017447668.1\|837139_838567_+\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.29137e-156
NZ_CP013249.1\|WP_071653091.1\|814984_816463_+\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293757	cd16033, sulfatase_like, uncharacterized sulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	3.54366e-60
NZ_CP013249.1\|WP_071652787.1\|823851_824745_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.37945e-154
NZ_CP013249.1\|WP_071652783.1\|813942_814755_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.03095e-25
NZ_CP013249.1\|WP_017447671.1\|831047_832256_+\|EAL-domain-containing-protein	gnl\|CDD\|225968	COG3434, COG3434, Predicted signal transduction protein containing EAL and modified HD-GYP domains [Signal transduction mechanisms].	7.63158e-121
NZ_CP013249.1\|WP_079866552.1\|822583_823855_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	1.3227e-123
NZ_CP013249.1\|WP_021452719.1\|824756_825788_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP013249.1\|WP_071652791.1\|833745_837060_+\|DUF5107-domain-containing-protein	gnl\|CDD\|375006	pfam17128, DUF5107, Domain of unknown function (DUF5107). This family is found in range of different bacterial species. In many proteins it lies N-terminal to a TPR-repeat region at the C-terminus.	1.66263e-66
NZ_CP013249.1\|WP_071652789.1\|829242_830901_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	6.40904e-57
NZ_CP013249.1\|WP_071652785.1\|818229_819207_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	2.21556e-169
NZ_CP013249.1\|WP_071652786.1\|819203_822584_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP013249.1\|WP_071652790.1\|832373_833321_+\|hypothetical-protein	gnl\|CDD\|226480	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism].	6.32092e-40
NZ_CP013249.1\|WP_071652792.1\|841220_843416_+\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|236505	PRK09419, PRK09419, multifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase/5'-nucleotidase.	1.68791e-70
NZ_CP013249.1\|WP_071652784.1\|816518_816875_+\|DUF202-domain-containing-protein	gnl\|CDD\|225060	COG2149, COG2149, Predicted membrane protein [Function unknown].	7.59809e-23
NZ_CP013249.1\|WP_071652793.1\|843507_844683_+\|YibE/F-family-protein	gnl\|CDD\|377940	pfam07907, YibE_F, YibE/F-like protein. The sequences featured in this family are similar to two proteins expressed by Lactococcus lactis, YibE and YibF. Most of the members of this family are annotated as being putative membrane proteins, and in fact the sequences contain a high proportion of hydrophobic residues.	2.50358e-78
NZ_CP013249.1\|WP_021452720.1\|825797_826436_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	1.11658e-61
NZ_CP013249.1\|WP_017447667.1\|838642_839545_-\|aldose-1-epimerase	gnl\|CDD\|185698	cd09021, Aldose_epim_Ec_YphB, aldose 1-epimerase, similar to Escherichia coli YphB. Proteins similar to Escherichia coli YphB are uncharacterized members of the aldose-1-epimerase superfamily. Aldose 1-epimerases or mutarotases are key enzymes of carbohydrate metabolism, catalyzing the interconversion of the alpha- and beta-anomers of hexose sugars such as glucose and galactose. This interconversion is an important step that allows anomer specific metabolic conversion of sugars. Studies of the catalytic mechanism of the best known member of the family, galactose mutarotase, have shown a glutamate and a histidine residue to be critical for catalysis; the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen.	3.18376e-78

>NZ_CP013249.1|WP_021452720.1|825797_826436_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDYYQEITLLPDADISLGFIWQNVFQQVHLALVDNKVADNQSSIAVGFPEYGKSGFPLGNKLRLFAMELAGLEKLSIEQWLSRLEDYVHIKGIKSVPNDVTYVSFTRKQVKSPERIERDMQKKAELWATESGRSLQECLVELEKTKPTSLCSLPFIYLHSQQTKQRSPDKSSRFPLFIEMNDIGIKQEGQFDCYGLNAKLNQQGSLGTVPQF
>NZ_CP013249.1|WP_021452719.1|824756_825788_+|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDTASVLAFEKKLVPSDGYLYGTNWDTKDKATPLVLQEKSVRGTISNRLKAAVQKDPLKLNAEVEKANLQRVDACALGQEQDTLKLHFTLKVLGGLAQPSACNNALFKQSYSAAVNQYISKYGCSELAQRYATNIANARFLWRNRVGAEDIEVQVKALNKGTEQSWTFNAKEYKVHCFDNADEQIKSLADRIAQTLSNESEHLMLQIDCYAKVGKAQEVYPSEELVLDKGNSKSKKSKILYAVNDNAAMHSQKIGNALRSIDTWYPDFSDVEKSAGAIAIEPYGAVTNLGKAFRTPKDKQDFYTFFDKWARGEALSREEDEHYVVAVLVRGGVFGESDK
>NZ_CP013249.1|WP_071652787.1|823851_824745_+|type-I-F-CRISPR-associated-protein-Csy2
MRLLILPHIRIHNANALSSPFTIGFPAMTAWLGFTHALERKLNQAGLDELMFDSVAVVSHQFDLQTHKGEGDFVHSIIGTGNPLDKDGSRSAFIEEARCHLEVSLVIEYRSNDDEIESDDFAQRLQNMVATMKVAGGDILSLQRPVSKLVDEEDEQETAKLLRQLMPGYVLVERRELMADAMLEGCDALDALLSYLTVNHSSEQLEDESVIWRSQRKASGWIVPIATGFQGISPLGQAKNQRDPTVPHRFAESIVTLGEFVMVHKIKHLDEILWCYSTDLDNDLYLCQQVSTMNEYQ
>NZ_CP013249.1|WP_079866552.1|822583_823855_+|type-I-F-CRISPR-associated-protein-Csy1
MEVITVIDPAIEAFFAERKEAWLKKNMSTAMDEQQLREKQQECEQNFSLSNWLPDAAKRAGQISISSHPCTFSHPSARKNKNGYVSSVIAKNRSQADGFLRSGNVSVEVDALGNAAALDVYKFLSLEMADRRSLLTHIEQGSELAQGLLTQPNTDYQTLREGFLKMIDTDQEAISSSKVKQVYFPVAEGEYHLLSLLTHSGHLFELRQRLDALRFGEEVKQARECRKNGQFYPDGYQEIFGLTTIGFGGTKPQNISVLNNKNAGKAHLLASTPPELKPRNLRLPTTDFFKESFTAWQAKETLEALHRLFKTDYNNINIRDGRDYRIQEYVDLVIHKMWQVRLFLADYQGDLSSDLKPEQKFWLYPEYEQYRLEENEWLEGIIRQISRSLIFNYSKVTNNSTALADDELLAIERVVRDNKEALR
>NZ_CP013249.1|WP_071652786.1|819203_822584_+|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKNALKKTRRVLDAFANRIGDNTWQTLITEDGLQTVQKMLRQTASRSTAVSCHWIRSRSRSQFLWVVGNKKKFNLEGYVAVNSTEKDLLNSEYESDWKYLPVIKALTSMAALLHDWGKASLLFQEKLHPDIQTKHKGDPLRHEWISCLLFNQFVTSVTPDGEDKQWLSAIINDGIHSPAINPTSLMAKEKPLAELPTVASLISWLVVSHHRLPLPKDAKLCDNQRDKNNTSLADLLKRVTPAWGYENQFDDYQKLLPKCFSFPLGLLSDSSIWNQQIQKRAKDLFHHLPLIEQAVSDGSWRVILHHARLCLMLGDHHYSSQPNDPHWNSSTELYANTDRNTKALKQKLDEHLVNVARAANDMVKLLPHFESEPLSATELSALAAKPNTPQQFRWQDKAVRKVLQWRDTTEDKSNGYFVVNMASTGCGKTMANAKIMQALSEDKQSLRFILALGLRTLTLQTGDEYKQRLKLTEDDLAVLIGSKAIFELHQSGQQIDKEEKEYQQAESGSESLESLLDEYDELRWSGALPEDGLSTVLTNSKERQLLYAPVLACTIDHIMAATETKRGGRYILPCLRLMSSDLVIDEIDDFTGDDLIAIGRLVHLAAMLGRKVMISSATIPPDLALGLYNAYRQGWALFAASRDQVSSVNCVYVDEFNTQAELIGSADSDWQQYQAFQQQFIAKRVAKLKQQDAKRKADIFACDKHDRLPTEQQYYQHIQQAIIEKHQRHSTFDLVSQTHVSFGVVRVANIQPCVRLTQYLLACDGWPEDTEIRCMAYHSQQVLLLRHEQEKHLDIVLKRKEKDDEVPVAFNEPLIRQHIDNCRTKNLIFILVATPVEEVGRDHDFDWAAIEPSSFRSIIQMAGRVRRHRDGEVAEPNISLLQYNYKGFIGGVERVFNHPGYETERSTQLDTHDLKLLVDEKLLLQSVNAIERIQKRPNLTPRTNLADLEHFATAKTLGVEHINNPPVSSTSRQDRFARHRRPNPSDGFWNDHLHGHITGYWWMTALPQYFKRFRKSEPSVQLYLVKKHRTTEFCIRDEQGGLNTIEQTLNIERQSLTNEQQQRLWLYRDYDALVSQYSSSADDEFKTSVKFGEISFTDRGEQDQYSYNDQLGLVKVK
>NZ_CP013249.1|WP_071652785.1|818229_819207_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MKQFSSSDLKTILHSKRANMFYLEYCRVMQKDGRVLYLTEADKENLYYNIPIANTTVLLLGNGTSITQAAMRMLSQAGVLVGFCGGGGTPLYMANEVEWFTPQSEYRPTEYLQGWLSFWFDDEKRLLFAKMFQNARIDYLQRVWCKDRELALEKFNVQDAVIQQSLDIFHQRTDAASKPSDLLLTEAQLTKSLYKYAANNTGKENFSRQHKSTDKANDFLNHGNYLAYGLAASCLWVLGIPHGFAIMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKENATEQEFRQQILQSFIEHKAMDFMFDTVKQVALQNYSLAEIEEKQL
>NZ_CP013249.1|WP_071653092.1|816858_817224_+|DUF202-domain-containing-protein
MSLLDETQLKSDAGLQVERTVLSWLRTLFVSALIVLSIAKILYGLISWSLAASLVCACLACRYVYTSGLCVTTRGTSWKAGQHKVISISLILSAIFYCGHIFQFLAIKIVKFVQLTQISHL
>NZ_CP013249.1|WP_071652784.1|816518_816875_+|DUF202-domain-containing-protein
MSWKKQGEDPDYRFTLANERTFLAWVRTALGFFTAAIAVDQLATSLNDALYKSLICLSLLAISILCSIFAYANWRGNEIAMRLNNNLSYSHAIKVIPILMVVVITFLLSSIYHDVFVG
>NZ_CP013249.1|WP_071653091.1|814984_816463_+|sulfatase-like-hydrolase/transferase
MISADCYHPQRPLSGVINTPNIESIATEGTSFSSAFTPSPLCGPARAAIFTGMHPPYLSNGERTPVGMKVDLELDDIIFQDYLKRVGYSLKHSGKCHVGVEKFVRTFGENVHAWDRWGPPVEDDDRYLAYLANMGVQLPKYRKELRGLQIDKLSPANSFGGWIEQQDGSDFPLDAHYSVFLAKSAVEQIKASKIQAPAKPIFTQLEFFDPHQPYSVPSGLEARYEQIKAVITLPDSFTMQEEGNPIYALYQQYWGMYDAEVAKDYIACHLLQVEVVDHAIGHLTRFLKEEGLWDETAIVFSADHGDMNGRMAMADKGSYFQPDIFRIPLIIKPPKSQQTMLKQSDETVSAIDVAPSILGFAGIEIPSQMEGDNLLNVMQGKARRPLTQVYQTGVHVGCNYGFGFQVMLEGKPYFYGYNATTGFEELHHLDKDDQSNLFDLDEYQIHKEAIVLQAAQLLQSDPRWSGYWSSYRLHNARYLPSAGGDMQMLKPQ
>NZ_CP013249.1|WP_071652783.1|813942_814755_-|AraC-family-transcriptional-regulator
MKNQPLLIEQSADSCGITLRSTWDVHADMNYHIKWPRDRMLPMLPNAIVAVYTIQGSGCIKMKSGKVLTVSAPSVTFIDSRNIDSYWTNGIVWNLNWFEFLMQGVTPIPFEEPIALKNDDYPSILSEVKALIASKSPIKLNAAVAGFGFVFYKWLTLIDQSKSMTSQEKTVHEIVAKMSENIGENIAIKQFAQEAGYTEQYLRKLFLKYLNVTPKQYYLKLKLDASMMMLKRSGTNVKRVAFELGFNDSFHFSRAFKKQFGVCPSKANEV
>NZ_CP013249.1|WP_131168624.1|828656_828998_+|hypothetical-protein
MLCNVCKLNYDKTIRLGRIAICDECLISASDFYKEHSHEKFEIIFHADMSLRIFRRTFPDIYKIEGFSDRLKTLKSNIDILEEKVSSLSEKESIYKPINNIVKELNLLYSLYV
>NZ_CP013249.1|WP_071652789.1|829242_830901_+|methyl-accepting-chemotaxis-protein
MSNLVTLEQPLFNQTLFEQFISAANAQDYVIDVYAANLDGETISAQEGGYIKGYNARSLNKSWFMTIINGMPFNMTEPQKNLSGDYIISVSAPIKEQGKTVGVYAMDIDFGKYMKDRDFGVYAILTKTNTVVTAFDPTWVSKSIDDVRPMLKDIKYKSALTYANQSGETFLAIKEPINDYFDVIAFSSLSKSISSMHTTVAWLVGLIIVGGVICCLILGFVLKRELSLLPMITTIIKDMANGNFKSFKIKKCNNEIDQISESLTLMQNNIGVVMDTGSQAMQEVLANQENVSRMISNATQEAQKELSAVEQVATAATELSATAEEVAKNASDAELATNEALEAIERGSIALGLNNEISAQVRESIAESREVVSQLRGYSEEIGSVLEMINSVSEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQESTQTIQEFIDKLQNQSKTADDLMVNNSRLMDESSEASIALSSSFKEITTQMDNISQINTMVATASTEQSCVTQDISSQINSINDSVESNLVAFNDTEKSCSESSELINQMNDSLSFFKK
>NZ_CP013249.1|WP_017447671.1|831047_832256_+|EAL-domain-containing-protein
MSYTYIARQPILDKNKNTLGYELLFRDGPKNTFPDTDPEFATSRVLSDHFLSNNHNMLGGGLIFVNFPYQSLINLVPKLFPKESLVIEVLEDCEPTDELLNVIKKLNFLGYRIALDDFVPSKKWIKFLPYVSIIKIDVRLFPINEAKRVINSLQYLKITFLAEKIETYKEFNMAIDAGFTMFQGYFFCKPELVKNKVLNPANLTSIQLCKEMSSSSINMSKIEYLFSVDIALSYKLLMYVNTGHILRAEIKSVKQALIYLGESRLRQFIALIVVTSVPEDKPDYLRFMAIQRAYMCETLSNRMNGEGFLTGLLSLLGTLLDQPLDIIIKNIPINDDIKLAILNGKGYLGNLLSMVIAYENADWIKLNKYCNYLKISDEVLLDSYFKAMDFSNNLFKTIRNKK
>NZ_CP013249.1|WP_071652790.1|832373_833321_+|hypothetical-protein
MKKIMMISACYALMTNMVHASEVSFSENTNQKEQQPSYTNTLYQKETSNAYSQKTTISQFKKAAHLLISAREENKLIELPDALKPTVLSEGYQIQDQIIQDISARQHGWKVAITSDTLMKKAGVSEPISGPLFTRWMYAAPYSINDGAPTLYGFEFEFAFKMAKELPPRELPYSRDEVKAAVGSMHLAIEPVGTRYIQGPVKSGVPQFAADHGGNFGFVYGPAIPNWENINLSNVVVAGYFDDHKVGQELGSNVMGNPLNSLTWLANHLPTRGYSLKAGDWVSTGAVVGPIPVKPPVKVRGVFGDLGSVSLDFAG
>NZ_CP013249.1|WP_071652791.1|833745_837060_+|DUF5107-domain-containing-protein
MSTSAKAWVEEVVLPTYPTGKVDPNPLFLEKRVYQGSSGSVYPYGVIDSITDDKIDQSYQAVFVENDYIKIMLLPELGGRIHRAYDKMKGRDFVYYNEVVKPALVGLLGPWISGGIEFNWPQHHRPTTFMATDFKIEHHNDGSVTVWIGEIEHMYGLQIMAGFKLYPNKALIEITGKVYNGNETARQFLWWSNPAVKGGDDHQSIFPPDVTAVYDHGKRDVSNFPIATGEYYKVDYSPGTDISRYKNLPVPTSYMADKSSYDFVGAYSHDEQGGLLHVANHHISPGKKQWTWGNCDFGIAWDRQLTDHNGPYIELMTGVFTDNQPDFTWIDSHEEKVFVQHFLPYSNLSNVHNANTDVAIKLERLDGSVQWAVYAIAELDNYVVTISSEDDTLLETKVTLKPGDVHQGEFEVAGDSRLTMKVTSEDGYRSLSYVEHIASDDEPTPEPATAPALPEDVESIEELYFIGQHLQQYHHATRSPVDYYQEALKRDPNHYQTNVAMASLAYERADYQATLAHTNAALIRAHKLNKNPLCGKASYLRGCAKEKLGYLDEAFSDVFKATWSSNCRDAGFYAAARIATKQLRLNEALEYTERALQLNGMHYQAAILKAYLLASMNRRAEAESFIASQREVQPLGYGLAFEQYQLTQSASDLALFTQLMNQREANTIYLTNFYLSIGAVERAKAVLKLCGSQGAMSCIYQTYLSEESALAFELLDKAEQAFSDNILFPNTLTEIGVLASFPEHYFAQYLLGCFFYAKRDYSRAVNHWENVLRLNPNYAPVLRNLSVYMYNKVQDTDKAIELMSKAFELSPQDARVLYELDYLKQAATVNPIERLAFLQSHLEIVEKRDDLTAERLNLLNITGRVEEAASCLASRQFHPWEGGEGRITGQFVVNKIRMALNFISQHAYADAIECLNSALSYPHNLGEGRLVGQTDNDIHYFLGYCYQQIDQQELAARHFTEATKGKQEIKQSRYYNDQPADYLFYCAAALHQLGDTDKAVSIYKEMVEWANAEFDNLVETDFFAVSLPALIVFDSNLQTEHQQHCLFVKAMGQLGLALSTKNGSYETFENTLQALLMQSPAHTKANLFKEIAQHRYAFSRNDQM
>NZ_CP013249.1|WP_017447668.1|837139_838567_+|sugar-porter-family-MFS-transporter
MSETNNQLNMRNIWLISLVAACGGLLFGYDWVVIGGAKPFYEAYFNITNASLSGWAMSSALLGCMVGAFIAGTISDKYGRKRPLILAAFLFVVSAWGTAASDSFNAFVVYRIIGGVGIGLASALSPMYIAEIAPAEKRGKFVAINQLTIVIGVLAAQIINLMIAEPVAAGASQADILQTWNGQTGWRYMFGAELVPALAFLLLMFVVPESPRWLVKMGMTNEAKGTLLRIGSESYATRTVAEIESTLSKETRSLPFSALLKPDVKPILVIGVVLAAFQQWCGINVIFNYAQEIFASAGFDINDTLKSIVATGLINLVFTILAIPFVDKIGRRKLMIFGSLGLTIIYGFMSAAYAYGILGLPVLFLVLVSISIYALTLAPVTWVLLSEIFPNKVRGTAMSVSTLALWVACFALTYTFPLLNEGLGASGSFLLYGIICACGFVFIYRRVPETKGRSLEELEKELVPRTNAVGNEVNV
>NZ_CP013249.1|WP_017447667.1|838642_839545_-|aldose-1-epimerase
MATHTLKNDMFNLVINERGGCIDCFQYRGKKPFDILRPRTELGNGSAGESGMFPMIPLVNRVRANHFNWRGKQVVLPINPQVDKGFFLHGDGWLSQWKLSQENQTDGWIELELASSIDGVCHYYAVQRFHLIQNRLVVTMTLANQGTEDFPFGLGFHPFFSCLPDTKVTFPAFGVWLEDHCYLPCSYTTNIPPVFNFNKSKRIPEDWINNGYSMGEPGVVATIQHSNGLVITLTSPCEYLQVFKPKGQSNFLCLEPQSQAVDAHSYLPTSSDDSATSNMGLVVLSPNQSMQIQMSIQVRK
>NZ_CP013249.1|WP_025522392.1|839684_840914_+|ROK-family-transcriptional-regulator
MINTGNSGFGERKGLNNQQVRQYNCRIIMELLYKHKGMTKSQLAQSTQLSIPAVTKIIDFLIEQGKVENALPLQTKKGNFKGLYKVSCNHPATICMNVSPTRIQAIMVNNEITPCSDFVNYPISPSTPEELIENIISVIVACRQVNPMAAYRLSIAVHGQVDTHVGSSMRMPQAPWTEAIEIKYILEQRLNVDVLVDNDCVMMALAEKWMDGHGGEDFCVLNVDYGIGSSFLINNNIYRGKMFGSGQIGHIKVVDNGVICGCGREGCLETEASSKALCNNYRQQSSLNQHHANSSDNTLTFSDFLELHQHQDPLAIKVAERAAKIIGQSLYNFLITLNINKIILYGNTCALGQSWLDTITEQTLVNPFEDKNARRQDLTLVTFGQLSEEERVMGMSYLWVEQELDNLFL
>NZ_CP013249.1|WP_071652792.1|841220_843416_+|bifunctional-metallophosphatase/5'-nucleotidase
MTLFKRSLVCIAVVGLMAGCNDDETKYVEVPSDYSPVVVEGKTLTNTPDVVVKGEVTQADEVTIAIAATSDLHGRLFGFDYALNAVDDDAGVTRVATLLADQKAAHPNMILIDIGDTVQGNSAQLFNDDPTHPVVESMNSLGFDVWVPGNHEFNFERSFIDRNLNHFNGAVLSSNIKWESNDVNYIRAFQMFEVEGVKVAVVGLTPSNVPNWEASAPDHFKGLKFENELDATKEAVGQLVSKYNPDVIVGALHLGRQEDGGVGVYKIASAMADKFDVILAGHEHANYIEQVNVDGTVTPISKATSEIGGDNSLIEDKAKFGAYNQENRTQSVKIIEPGKWGAYLAKAEIQLKKVDGKWTMVDTTLTNIGTKKVEEDQAIQAIFQYVHDISVEDATRELGRVTGNFTPSATGFQDEATATDYNYTAERLYSTIHLAKVVDTPLMDVINQIQMQQIEATVGEGKGAVVSAASLFSDQSNLIDNEVYTKGKSTNLYKYDNTLLGVEMTGANLKRFIEWSYSYFNQYKPGDITVSFKKGAPAYLYDQFDGDIQFTVDLSKPSLELDENNAVTNEGSRVSITSIGGEQFDPNATYKVAMNSYRFGSQIQKFGWADKDDVFYDSVNEPVYAIRDMLTAYVEKNHGIDVADFSDNVGNWAFTQYQPSGEITTLRDGEGKALWEQLKNMEICVSIDLENPKYPAIVKSVNINDSSSYFVNPNKDATTLDEKVAGCNPAH
>NZ_CP013249.1|WP_071652793.1|843507_844683_+|YibE/F-family-protein
MIKRIYNKWGFTLLIILISTLIFQLSSSWSEDFRPKSRQQQEFVEATVTHSISNHVMPDPLVPDVMTGKQVFIAKILEGESEGLEVEVTNPLSRQHNVYVSEGDTFIMMIRETSNGPVYWAYNHKRSDAIYLMLALFCALLLSFGKKEGINSMVALYFTAALIVGVLVPSIFAGWNPMLISILLMMVIIVVSFILVSGYNRKSLCAMGGTLLGVIAAGVMAQWFGEMAHLSGIYLDKGEDVIYLTSVKMGIRWLMFVTIVVAALGAVMDVAISIASAYAELQQTDPKLTPKQLVKASMNIGRDIMGTMTNTLILAFAGGSLTTIMMVWGLNMPASQFMNMPLVGLAVVNALAGSVGIVLTIPFTAFLAPYVFKNKCILNEKNTCVAYGDRQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013249_3	3.9\|827095\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827095-827126	32	MH649173	Microviridae sp. isolate ctch009, complete genome	3428-3459	6	0.812
NZ_CP013249_3	3.22\|827875\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827875-827906	32	MH649173	Microviridae sp. isolate ctch009, complete genome	3428-3459	6	0.812
NZ_CP013249_3	3.7\|826975\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826975-827006	32	NC_049978	IAS virus, complete genome	44650-44681	7	0.781
NZ_CP013249_3	3.20\|827755\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827755-827786	32	NC_049978	IAS virus, complete genome	44650-44681	7	0.781
NZ_CP013249_3	3.7\|826975\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826975-827006	32	NZ_LR134433	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 24	341352-341383	8	0.75
NZ_CP013249_3	3.20\|827755\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827755-827786	32	NZ_LR134433	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 24	341352-341383	8	0.75
NZ_CP013249_3	3.24\|827995\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827995-828026	32	MF498774	Aeromonas phage AS-yj, partial genome	126744-126775	8	0.75
NZ_CP013249_3	3.24\|827995\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827995-828026	32	MH791398	UNVERIFIED: Aeromonas phage Asswx_1, complete genome	20526-20557	8	0.75
NZ_CP013249_3	3.24\|827995\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827995-828026	32	MN871442	UNVERIFIED: Aeromonas phage Aszh-1, complete genome	6211-6242	8	0.75
NZ_CP013249_3	3.24\|827995\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827995-828026	32	NC_048674	Aeromonas phage AS-sw, partial genome	17481-17512	8	0.75
NZ_CP013249_3	3.24\|827995\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827995-828026	32	MF498773	Aeromonas phage AS-szw, complete genome	12206-12237	8	0.75
NZ_CP013249_3	3.24\|827995\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827995-828026	32	MF448340	Aeromonas phage AS-zj, complete genome	118986-119017	8	0.75
NZ_CP013249_3	3.24\|827995\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827995-828026	32	MN871441	UNVERIFIED: Aeromonas phage AsSzw2, complete genome	140073-140104	8	0.75
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	HM452126	Aeromonas phage phiAS5, complete genome	132723-132754	9	0.719
NZ_CP013249_3	3.5\|826855\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826855-826886	32	NC_025446	Escherichia phage ECML-4, complete genome	132636-132667	9	0.719
NZ_CP013249_3	3.5\|826855\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826855-826886	32	NC_042061	Salmonella phage STML-13-1, partial genome	56609-56640	9	0.719
NZ_CP013249_3	3.7\|826975\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826975-827006	32	MN693465	Marine virus AFVG_25M405, complete genome	32284-32315	9	0.719
NZ_CP013249_3	3.7\|826975\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826975-827006	32	AP013474	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C83-MedDCM-OCT-S23-C22	11113-11144	9	0.719
NZ_CP013249_3	3.12\|827275\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827275-827306	32	AP013465	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S32-C58	19620-19651	9	0.719
NZ_CP013249_3	3.13\|827335\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827335-827366	32	MK468591	Mycobacterium phage Arissanae, complete genome	52677-52708	9	0.719
NZ_CP013249_3	3.13\|827335\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827335-827366	32	MN310542	Mycobacterium phage Keziacharles14, complete genome	52870-52901	9	0.719
NZ_CP013249_3	3.15\|827455\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827455-827486	32	MH823906	Citrobacter phage Maroon, complete genome	52860-52891	9	0.719
NZ_CP013249_3	3.15\|827455\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827455-827486	32	LC589952	Enterobacter phage vB_EkoM5VN DNA, complete genome	101564-101595	9	0.719
NZ_CP013249_3	3.15\|827455\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827455-827486	32	MN508621	UNVERIFIED: Enterobacter phage EC-W1, complete genome	68241-68272	9	0.719
NZ_CP013249_3	3.15\|827455\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827455-827486	32	KT381880	Citrobacter phage Margaery, complete genome	53304-53335	9	0.719
NZ_CP013249_3	3.16\|827515\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827515-827546	32	NZ_CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	410368-410399	9	0.719
NZ_CP013249_3	3.18\|827635\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827635-827666	32	KY981271	Curvibacter phage P26059A, complete genome	8571-8602	9	0.719
NZ_CP013249_3	3.20\|827755\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827755-827786	32	MN693465	Marine virus AFVG_25M405, complete genome	32284-32315	9	0.719
NZ_CP013249_3	3.20\|827755\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827755-827786	32	AP013474	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C83-MedDCM-OCT-S23-C22	11113-11144	9	0.719
NZ_CP013249_3	3.25\|828055\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	828055-828086	32	AP013465	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S32-C58	19620-19651	9	0.719
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_KX858825	Enterobacter cloacae strain N13-1531 plasmid pIMI-5, complete sequence	4186-4217	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NC_016515	Enterobacter ludwigii strain EcWSU1 plasmid pEcWSU1_A, complete sequence	60692-60723	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NC_014107	Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence	4678-4709	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP035636	Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence	32595-32626	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP040675	Exiguobacterium mexicanum strain A-EM plasmid punnamed1, complete sequence	65785-65816	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP031569	Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence	110363-110394	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP046273	Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence	4678-4709	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP012169	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence	4678-4709	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP009855	UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence	82209-82240	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP008907	Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence	39575-39606	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP042541	Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence	4678-4709	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP026851	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1	100125-100156	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_AP019534	Enterobacter asburiae strain MRY18-106 plasmid pMRY18-106EAS_1, complete sequence	4777-4808	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_LT991956	Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2	4678-4709	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP029719	UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence	39048-39079	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP045770	Enterobacter cancerogenus strain MiY-F plasmid pCFSAN086183, complete sequence	43834-43865	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP031723	Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence	14957-14988	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	NZ_CP042567	Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence	4678-4709	10	0.688
NZ_CP013249_3	3.3\|826735\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826735-826766	32	MK471334	Enterobacter cloacae plasmid pNRZ-28021, complete sequence	24213-24244	10	0.688
NZ_CP013249_3	3.14\|827395\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827395-827426	32	AP013438	Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C113A-MedDCM-OCT-S35-C17	29712-29743	10	0.688
NZ_CP013249_3	3.14\|827395\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827395-827426	32	AP013702	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C113A-MedDCM-OCT-S33-C15, * SEQUENCING IN PROGRESS *	14596-14627	10	0.688
NZ_CP013249_3	3.23\|827935\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827935-827966	32	NZ_CP036488	Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence	347997-348028	10	0.688
NZ_CP013249_3	3.23\|827935\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827935-827966	32	NZ_CP032297	Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence	217355-217386	10	0.688
NZ_CP013249_3	3.23\|827935\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	827935-827966	32	NZ_CP034837	Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence	377597-377628	10	0.688
NZ_CP013249_3	3.4\|826795\|32\|NZ_CP013249\|PILER-CR,CRISPRCasFinder,CRT	826795-826826	32	NZ_CP012899	Burkholderia sp. CCGE1001 plasmid pCCGE1001a, complete sequence	47541-47572	11	0.656

1. spacer 3.9|827095|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MH649173 (Microviridae sp. isolate ctch009, complete genome) position: , mismatch: 6, identity: 0.812

tgaatacggcgataaaaacggtagattacatt	CRISPR spacer
tgaatacggcgaaaaaaacgatagaccccact	Protospacer
************ *******.****.. **.*

2. spacer 3.22|827875|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MH649173 (Microviridae sp. isolate ctch009, complete genome) position: , mismatch: 6, identity: 0.812

tgaatacggcgataaaaacggtagattacatt	CRISPR spacer
tgaatacggcgaaaaaaacgatagaccccact	Protospacer
************ *******.****.. **.*

3. spacer 3.7|826975|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NC_049978 (IAS virus, complete genome) position: , mismatch: 7, identity: 0.781

agaaagtaaatcctcaagagatagagattcat	CRISPR spacer
ataaagttaatcctcaagatatagagttgtct	Protospacer
* ***** *********** ****** * . *

4. spacer 3.20|827755|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NC_049978 (IAS virus, complete genome) position: , mismatch: 7, identity: 0.781

agaaagtaaatcctcaagagatagagattcat	CRISPR spacer
ataaagttaatcctcaagatatagagttgtct	Protospacer
* ***** *********** ****** * . *

5. spacer 3.7|826975|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134433 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 24) position: , mismatch: 8, identity: 0.75

agaaagtaaatcctcaagagatagagattcat	CRISPR spacer
ttaaaggaaatcctcaagacatagataataaa	Protospacer
  **** ************ ***** * * *

6. spacer 3.20|827755|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134433 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 24) position: , mismatch: 8, identity: 0.75

agaaagtaaatcctcaagagatagagattcat	CRISPR spacer
ttaaaggaaatcctcaagacatagataataaa	Protospacer
  **** ************ ***** * * *

7. spacer 3.24|827995|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MF498774 (Aeromonas phage AS-yj, partial genome) position: , mismatch: 8, identity: 0.75

aatctttgcggaactcttcaaaatcttcaaac	CRISPR spacer
attctttgtggaaatcttcaaaatcttttttt	Protospacer
* ******.**** *************.   .

8. spacer 3.24|827995|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MH791398 (UNVERIFIED: Aeromonas phage Asswx_1, complete genome) position: , mismatch: 8, identity: 0.75

aatctttgcggaactcttcaaaatcttcaaac	CRISPR spacer
attctttgtggaaatcttcaaaatctttttta	Protospacer
* ******.**** *************.

9. spacer 3.24|827995|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MN871442 (UNVERIFIED: Aeromonas phage Aszh-1, complete genome) position: , mismatch: 8, identity: 0.75

aatctttgcggaactcttcaaaatcttcaaac	CRISPR spacer
attctttgtggaaatcttcaaaatctttttta	Protospacer
* ******.**** *************.

10. spacer 3.24|827995|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NC_048674 (Aeromonas phage AS-sw, partial genome) position: , mismatch: 8, identity: 0.75

aatctttgcggaactcttcaaaatcttcaaac	CRISPR spacer
attctttgtggaaatcttcaaaatcttttttt	Protospacer
* ******.**** *************.   .

11. spacer 3.24|827995|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MF498773 (Aeromonas phage AS-szw, complete genome) position: , mismatch: 8, identity: 0.75

aatctttgcggaactcttcaaaatcttcaaac	CRISPR spacer
attctttgtggaaatcttcaaaatcttttttt	Protospacer
* ******.**** *************.   .

12. spacer 3.24|827995|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MF448340 (Aeromonas phage AS-zj, complete genome) position: , mismatch: 8, identity: 0.75

aatctttgcggaactcttcaaaatcttcaaac	CRISPR spacer
attctttgtggaaatcttcaaaatcttttttt	Protospacer
* ******.**** *************.   .

13. spacer 3.24|827995|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MN871441 (UNVERIFIED: Aeromonas phage AsSzw2, complete genome) position: , mismatch: 8, identity: 0.75

aatctttgcggaactcttcaaaatcttcaaac	CRISPR spacer
attctttgtggaaatcttcaaaatctttttta	Protospacer
* ******.**** *************.

14. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to HM452126 (Aeromonas phage phiAS5, complete genome) position: , mismatch: 9, identity: 0.719

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
tctatgacgaacattattcaaatctccaattc	Protospacer
   .******* ********** ***** ..*

15. spacer 3.5|826855|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NC_025446 (Escherichia phage ECML-4, complete genome) position: , mismatch: 9, identity: 0.719

acagagtgaaaatagtcccgacgatgccgcca	CRISPR spacer
actcgatgaaaatattcccgacgacgccgatg	Protospacer
**  ..******** *********.**** ..

16. spacer 3.5|826855|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NC_042061 (Salmonella phage STML-13-1, partial genome) position: , mismatch: 9, identity: 0.719

acagagtgaaaatagtcccgacgatgccgcca	CRISPR spacer
actcgatgaaaatattcccgacgacgccgatg	Protospacer
**  ..******** *********.**** ..

17. spacer 3.7|826975|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MN693465 (Marine virus AFVG_25M405, complete genome) position: , mismatch: 9, identity: 0.719

agaaagtaaatcctcaagagatagagattcat	CRISPR spacer
taaaagtaaatggtcaagagatagaggtcagc	Protospacer
 .*********  *************.*. ..

18. spacer 3.7|826975|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to AP013474 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C83-MedDCM-OCT-S23-C22) position: , mismatch: 9, identity: 0.719

agaaagtaaatcctcaagagatagagattcat	CRISPR spacer
agaaagtaaatgctccagagataaatgaagac	Protospacer
*********** *** *******.* .   *.

19. spacer 3.12|827275|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to AP013465 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S32-C58) position: , mismatch: 9, identity: 0.719

attcgcaaaccttgcgctatttgggtttgttc	CRISPR spacer
tttcgcaaaccttgcactattgggtctaaacc	Protospacer
 **************.***** ** .* . .*

20. spacer 3.13|827335|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MK468591 (Mycobacterium phage Arissanae, complete genome) position: , mismatch: 9, identity: 0.719

agacactagacctgttcagggtgagcatgagc	CRISPR spacer
taacactagacctgttcgggatgagtgtcaag	Protospacer
 .***************.**.****..* *.

21. spacer 3.13|827335|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MN310542 (Mycobacterium phage Keziacharles14, complete genome) position: , mismatch: 9, identity: 0.719

agacactagacctgttcagggtgagcatgagc	CRISPR spacer
taacactagacctgttcgggatgagtgtcaag	Protospacer
 .***************.**.****..* *.

22. spacer 3.15|827455|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MH823906 (Citrobacter phage Maroon, complete genome) position: , mismatch: 9, identity: 0.719

agaaaatgaaaaatgtctccgttttttaaatc	CRISPR spacer
agaaaatcaaaaatgtttccgtttctaccgat	Protospacer
******* ********.*******.*   . .

23. spacer 3.15|827455|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to LC589952 (Enterobacter phage vB_EkoM5VN DNA, complete genome) position: , mismatch: 9, identity: 0.719

agaaaatgaaaaatgtctccgttttttaaatc	CRISPR spacer
agaaaatcaaaaatgtttccgtttctaccgat	Protospacer
******* ********.*******.*   . .

24. spacer 3.15|827455|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MN508621 (UNVERIFIED: Enterobacter phage EC-W1, complete genome) position: , mismatch: 9, identity: 0.719

agaaaatgaaaaatgtctccgttttttaaatc	CRISPR spacer
agaaaatcaaaaatgtttccgtttctaccgat	Protospacer
******* ********.*******.*   . .

25. spacer 3.15|827455|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to KT381880 (Citrobacter phage Margaery, complete genome) position: , mismatch: 9, identity: 0.719

agaaaatgaaaaatgtctccgttttttaaatc	CRISPR spacer
agaaaatcaaaaatgtttccgtttctaccgat	Protospacer
******* ********.*******.*   . .

26. spacer 3.16|827515|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 9, identity: 0.719

ttgttcaaatgggagcagcaggaactacgcag	CRISPR spacer
tggccggaaagggagcagcaggaactgcgcca	Protospacer
* *.. .** ****************.*** .

27. spacer 3.18|827635|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to KY981271 (Curvibacter phage P26059A, complete genome) position: , mismatch: 9, identity: 0.719

tccaaaggactttaattaagagtggtgaatac	CRISPR spacer
ccgtctggtcgttaattaagagtggtgaaatc	Protospacer
.*    ** * ******************  *

28. spacer 3.20|827755|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MN693465 (Marine virus AFVG_25M405, complete genome) position: , mismatch: 9, identity: 0.719

agaaagtaaatcctcaagagatagagattcat	CRISPR spacer
taaaagtaaatggtcaagagatagaggtcagc	Protospacer
 .*********  *************.*. ..

29. spacer 3.20|827755|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to AP013474 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C83-MedDCM-OCT-S23-C22) position: , mismatch: 9, identity: 0.719

agaaagtaaatcctcaagagatagagattcat	CRISPR spacer
agaaagtaaatgctccagagataaatgaagac	Protospacer
*********** *** *******.* .   *.

30. spacer 3.25|828055|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to AP013465 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-C51-MedDCM-OCT-S32-C58) position: , mismatch: 9, identity: 0.719

attcgcaaaccttgcgctatttgggtttgttc	CRISPR spacer
tttcgcaaaccttgcactattgggtctaaacc	Protospacer
 **************.***** ** .* . .*

31. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX858825 (Enterobacter cloacae strain N13-1531 plasmid pIMI-5, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

32. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NC_016515 (Enterobacter ludwigii strain EcWSU1 plasmid pEcWSU1_A, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

33. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NC_014107 (Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

34. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035636 (Enterobacter cloacae strain EN3600 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

35. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040675 (Exiguobacterium mexicanum strain A-EM plasmid punnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
tcagtgaagaagattatttaaagcttttttat	Protospacer
  ***** **********.******.. *. .

36. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031569 (Enterobacter hormaechei strain 2013_1a plasmid pIncFIB-1301491, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

37. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046273 (Enterobacter hormaechei strain E70 plasmid pE70-sul2, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

38. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012169 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-210.894kb, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

39. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009855 (UNVERIFIED_ORG: Enterobacter cloacae strain ECNIH5 plasmid pENT-22e, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

40. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008907 (Enterobacter hormaechei subsp. hoffmannii ECR091 plasmid pENT-4bd, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

41. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042541 (Enterobacter hormaechei strain C4 plasmid pC4_001, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

42. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026851 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0072 plasmid unnamed1) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

43. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019534 (Enterobacter asburiae strain MRY18-106 plasmid pMRY18-106EAS_1, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

44. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LT991956 (Enterobacter hormaechei subsp. steigerwaltii isolate C309 plasmid pC309-p2) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

45. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029719 (UNVERIFIED_ORG: Enterobacter cloacae strain AR_0154 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

46. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045770 (Enterobacter cancerogenus strain MiY-F plasmid pCFSAN086183, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

47. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031723 (Enterobacter hormaechei strain WCHEH020038 plasmid p2_020038, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

48. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042567 (Enterobacter hormaechei strain C44 plasmid pC44_001, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

49. spacer 3.3|826735|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to MK471334 (Enterobacter cloacae plasmid pNRZ-28021, complete sequence) position: , mismatch: 10, identity: 0.688

aaagtgacgaagattattcaaagctccatccc	CRISPR spacer
cgcttcgagaagattatgcaaagcttcatcct	Protospacer
 .  * . ********* *******.*****.

50. spacer 3.14|827395|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to AP013438 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G17, isolate: uvMED-CGR-C113A-MedDCM-OCT-S35-C17) position: , mismatch: 10, identity: 0.688

aacagggagaatataaaaatactgccgataac	CRISPR spacer
ttgatagagaatataaaaatactgaagatggt	Protospacer
   * .******************  ***...

51. spacer 3.14|827395|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to AP013702 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C113A-MedDCM-OCT-S33-C15, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.688

aacagggagaatataaaaatactgccgataac	CRISPR spacer
ttgatagagaatataaaaatactgaagatggt	Protospacer
   * .******************  ***...

52. spacer 3.23|827935|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036488 (Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence) position: , mismatch: 10, identity: 0.688

tggttgcgtcacgctctggtattgctgctctg	CRISPR spacer
ctgttgcgtcacgctgtggtatggcgggcggt	Protospacer
. ************* ****** ** * .

53. spacer 3.23|827935|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 10, identity: 0.688

tggttgcgtcacgctctggtattgctgctctg	CRISPR spacer
ctgttgcgtcacgctgtggtatggcgggcggt	Protospacer
. ************* ****** ** * .

54. spacer 3.23|827935|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 10, identity: 0.688

tggttgcgtcacgctctggtattgctgctctg	CRISPR spacer
ctgttgcgtcacgctgtggtatggcgggcggt	Protospacer
. ************* ****** ** * .

55. spacer 3.4|826795|32|NZ_CP013249|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012899 (Burkholderia sp. CCGE1001 plasmid pCCGE1001a, complete sequence) position: , mismatch: 11, identity: 0.656

aaagccaaaaggcgcgtgaagtgtcgagaagt	CRISPR spacer
gtggccagaaggcgcgtgaagtgacgcaggag	Protospacer
. .****.*************** ** ....

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013250

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013248

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP013249

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection