CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016930	Francisella sp. MA067296 chromosome, complete genome	0 crisprs	csa3,DEDDh,PD-DExK,cas3	0	0	4	0
NZ_CP016929	Francisella sp. MA067296 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

79849 : 89991

Staphylococcus_phage(28.57%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071628449.1\|79849_81634_+	elongation factor 4	A0A2K9L6L3	Tupanvirus	2.1e-22	41.9
WP_114701994.1\|81581_82730_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_114701995.1\|83770_84295_-	peptide deformylase	E3SLL2	Synechococcus_phage	1.4e-16	42.2
WP_071628452.1\|84291_84735_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.9e-26	45.7
WP_071628453.1\|84744_85956_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	2.1e-90	45.9
WP_071628454.1\|85948_86554_-	riboflavin synthase	A0A1V0SE20	Indivirus	6.8e-18	36.2
WP_071628455.1\|86546_87614_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.5e-49	35.1
WP_157092979.1\|88215_88353_-	hypothetical protein	NA	NA	NA	NA
WP_071628456.1\|88625_88982_-	ferredoxin	NA	NA	NA	NA
WP_071628457.1\|89067_89991_+	S49 family peptidase	F8QZT1	Wolbachia_phage	1.2e-13	22.6

DBSCAN-SWA_2

661156 : 720359

Paenibacillus_phage(13.33%)

integrase,transposase,tRNA

attL 714807:714866|attR 720169:720385

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071628947.1\|661156_663040_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA	NA	NA	NA
WP_071628948.1\|663183_664266_+	hypothetical protein	NA	NA	NA	NA
WP_071628949.1\|664252_665158_+	FUSC family protein	NA	NA	NA	NA
WP_071628950.1\|665173_666085_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_071628951.1\|666192_666915_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	9.3e-06	40.0
WP_071628952.1\|667226_668675_+	exodeoxyribonuclease I	NA	NA	NA	NA
WP_071628953.1\|668708_670100_-	DUF1016 family protein	Q9JMP5	Wolbachia_phage	3.4e-49	60.4
WP_157092984.1\|670309_670456_-	hypothetical protein	NA	NA	NA	NA
WP_071628954.1\|670751_671159_+	DUF1398 domain-containing protein	NA	NA	NA	NA
WP_071628955.1\|671530_673543_+	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_071628956.1\|673581_674379_+	NERD domain-containing protein	NA	NA	NA	NA
WP_071628957.1\|674378_675176_+	glutamate racemase	NA	NA	NA	NA
WP_071628958.1\|675267_676545_+	MFS transporter	NA	NA	NA	NA
WP_157092985.1\|677271_678426_+	hypothetical protein	NA	NA	NA	NA
WP_114702045.1\|678465_678645_+	hypothetical protein	NA	NA	NA	NA
WP_114702046.1\|678628_678811_+\|transposase	IS1 transposase	NA	NA	NA	NA
WP_071628960.1\|679023_680478_+	circularly permuted type 2 ATP-grasp protein	NA	NA	NA	NA
WP_114702047.1\|680477_681464_+	alpha-E domain-containing protein	NA	NA	NA	NA
WP_071628961.1\|681481_683233_+	transglutaminase	NA	NA	NA	NA
WP_071628962.1\|683279_684449_-	amidohydrolase	NA	NA	NA	NA
WP_071628963.1\|684690_684933_+	hypothetical protein	NA	NA	NA	NA
WP_071628964.1\|685079_686465_+	exodeoxyribonuclease VII large subunit	A0A1V0SGL7	Hokovirus	4.5e-09	23.8
WP_066047264.1\|686448_686649_+	hypothetical protein	NA	NA	NA	NA
WP_071628965.1\|686747_688019_+	MFS transporter	Q6JIH2	Burkholderia_virus	2.7e-40	28.7
WP_071628966.1\|688022_688778_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.5e-62	46.3
WP_071628967.1\|688778_689252_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-25	45.4
WP_071628968.1\|689326_689758_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_071628969.1\|689757_690063_+	RnfH family protein	NA	NA	NA	NA
WP_071628970.1\|690052_690631_+	hypothetical protein	NA	NA	NA	NA
WP_071628971.1\|690623_691832_+	FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
WP_071628972.1\|691908_692829_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_071628973.1\|692944_694690_+	gamma-glutamyltransferase	NA	NA	NA	NA
WP_071628974.1\|694708_695464_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_071628975.1\|695633_697451_-	translational GTPase TypA	A0A2K9L2P9	Tupanvirus	3.2e-23	34.9
WP_071628410.1\|697857_698607_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	2.1e-21	44.2
WP_071628976.1\|698738_699437_+	hypothetical protein	NA	NA	NA	NA
WP_071628977.1\|699652_700525_-	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA
WP_071628978.1\|700533_700704_-	rubredoxin	NA	NA	NA	NA
WP_071628979.1\|700790_701408_-	hypothetical protein	NA	NA	NA	NA
WP_071628980.1\|701513_702908_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	7.0e-42	31.3
WP_114702048.1\|703170_704451_-	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_071628982.1\|704648_705677_+	SIS domain-containing protein	A0A0N9Q9E4	Chrysochromulina_ericina_virus	8.5e-21	29.7
WP_071628983.1\|705710_707063_+	sugar porter family MFS transporter	NA	NA	NA	NA
WP_071628984.1\|707151_707862_+	phosphatase PAP2 family protein	R4TQ27	Phaeocystis_globosa_virus	3.5e-05	25.0
WP_071628985.1\|707858_708605_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
WP_071629958.1\|708703_709909_+	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_071628986.1\|709923_710631_+	peptidoglycan editing factor PgeF	NA	NA	NA	NA
WP_071628987.1\|710649_712443_+	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	6.1e-99	36.7
WP_071628988.1\|712550_713615_+	DNA/RNA non-specific endonuclease	A0A2H4N7Z3	Lake_Baikal_phage	1.7e-35	39.0
WP_071628989.1\|713974_714724_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.1e-20	43.3
WP_071628990.1\|714798_715347_+\|transposase	IS6 family transposase	A0A1X9I6E7	Streptococcus_phage	1.2e-18	33.5
714807:714866	attL	NA	NA	NA	NA
WP_071628991.1\|715805_718073_+	glycosyltransferase	NA	NA	NA	NA
WP_071628992.1\|719558_719912_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_071628993.1\|720002_720359_-\|transposase	IS6 family transposase	NA	NA	NA	NA
720169:720385	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1418282 : 1427463

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071629589.1\|1418282_1420292_+	M3 family metallopeptidase	A0A1V0SID3	Klosneuvirus	7.4e-53	26.1
WP_071629590.1\|1420387_1420741_+	YraN family protein	NA	NA	NA	NA
WP_071629591.1\|1420801_1421899_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_071629592.1\|1421901_1422393_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.6e-20	41.2
WP_071629593.1\|1422498_1423083_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.1e-20	37.1
WP_071629594.1\|1423086_1425399_-	phosphoribosylamine--glycine ligase	A0A0M4JBD3	Mollivirus	3.6e-27	29.8
WP_071629595.1\|1425398_1426442_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.7e-56	40.0
WP_071629596.1\|1426614_1427463_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	3.1e-29	38.0

DBSCAN-SWA_4

1795513 : 1816176

Wolbachia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071629399.1\|1795513_1796263_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	2.1e-21	44.2
WP_071629909.1\|1796440_1797862_-	hypothetical protein	NA	NA	NA	NA
WP_071629910.1\|1798550_1799192_+	hypothetical protein	NA	NA	NA	NA
WP_071629912.1\|1799490_1800243_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.2e-19	30.8
WP_071628504.1\|1800311_1801274_-\|transposase	transposase	NA	NA	NA	NA
WP_071629913.1\|1801333_1801837_-\|transposase	transposase	NA	NA	NA	NA
WP_071629914.1\|1802195_1803827_+	hypothetical protein	NA	NA	NA	NA
WP_071629915.1\|1803926_1804718_+	hypothetical protein	NA	NA	NA	NA
WP_071629916.1\|1804816_1805383_+	hypothetical protein	NA	NA	NA	NA
WP_071629917.1\|1805768_1806008_+	hypothetical protein	NA	NA	NA	NA
WP_071629918.1\|1806061_1807009_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	1.0e-57	45.5
WP_157092991.1\|1807309_1807447_+	hypothetical protein	NA	NA	NA	NA
WP_071629919.1\|1807778_1809149_-	hypothetical protein	NA	NA	NA	NA
WP_071629920.1\|1809593_1810346_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_071629921.1\|1810358_1811099_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_071629922.1\|1811106_1811826_-	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_071629923.1\|1811893_1813042_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	3.7e-81	47.9
WP_071629924.1\|1813274_1814534_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.1e-41	29.4
WP_071628605.1\|1815228_1816176_+\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	3.6e-58	45.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage