CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP009682	Francisella tularensis subsp. novicida strain AZ06-7470 chromosome, complete genome	1 crisprs	cas3,csa3,DEDDh,cas4,cas2,cas1,cas9	0	2	2	0
NZ_CP009683	Francisella tularensis subsp. novicida strain AZ06-7470 plasmid pFNE_1, complete sequence	0 crisprs	NA	0	0	4	0

1. NZ_CP009682

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP009682_1

• CRISPR_ID: NZ_CP009682_1
• CRISPR_location: 1028766-1029722
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 13 spacers
• Cas_protein_info: cas4,cas2,cas1,cas9

Consensus repeat of NZ_CP009682_1

Consensus_repeat	Method
AATTATTTGGTAAACTACTGTTAG	CRT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	PILER-CR
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	CRISPRCasFinder

spacers of NZ_CP009682_1

>1.1|1028790|44|NZ_CP009682|CRT
AGTTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTT
>1.2|1028858|42|NZ_CP009682|CRT
TGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTA
>1.3|1028924|50|NZ_CP009682|CRT
CTAGAAACTTTTAGGAATAATTTACAAAATTAATTAAGTTTCAGTCGCTA
>1.4|1028998|47|NZ_CP009682|CRT
ATCATGGGACATATGGCGGTAGCACAGTCAATAGGTTTCAGTTGCTA
>1.5|1029069|47|NZ_CP009682|CRT
TCAATGCTGTACTAGAAACTACATACAAACTATAGTTTCAGTTGCTG
>1.6|1029140|46|NZ_CP009682|CRT
TGGTTCTACTGGTGGCGGTGGCACTGTCTCTTCGTTTCAGTTGCTG
>1.7|1029210|48|NZ_CP009682|CRT
AAGGGCATGCAAATCAATGGAGAAGTTTCAACTAAGTTTCAGTTGCTG
>1.8|1029282|48|NZ_CP009682|CRT
TATCAAAATATCTTTGTTTTGTACAACATAATGAAGTTTCAGTTGCTG
>1.9|1029354|48|NZ_CP009682|CRT
CTGTGCTTTGACTTCTTGTTCATCAGCTTGATACTGTTTCAGTTGCTG
>1.10|1029426|50|NZ_CP009682|CRT
TCTTTAAATAAGATGCTGGCAAAAATTCAAGGAGAAAGTTTCAGTTGCTG
>1.11|1029500|50|NZ_CP009682|CRT
CTGAGATGAAAGCTCTTGGTGATGAAGCTGAACGGGTGTTTCAGTTGCTG
>1.12|1029574|50|NZ_CP009682|CRT
TTTAGTTTGCATTTTTACTATTTTATGTATTTTAGATGTTTCAGTTGCTG
>1.13|1029648|51|NZ_CP009682|CRT
ACGCAAGAAGTAACAATTTATCGCGATTATGCTTATAAGTTTCAGTTGCTG
>1.14|1028998|34|NZ_CP009682|PILER-CR,CRISPRCasFinder
ATCATGGGACATATGGCGGTAGCACAGTCAATAG
>1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder
TCAATGCTGTACTAGAAACTACATACAAACTATA
>1.16|1029140|33|NZ_CP009682|PILER-CR,CRISPRCasFinder
TGGTTCTACTGGTGGCGGTGGCACTGTCTCTTC
>1.17|1029210|35|NZ_CP009682|PILER-CR,CRISPRCasFinder
AAGGGCATGCAAATCAATGGAGAAGTTTCAACTAA
>1.18|1029282|35|NZ_CP009682|PILER-CR,CRISPRCasFinder
TATCAAAATATCTTTGTTTTGTACAACATAATGAA
>1.19|1029354|35|NZ_CP009682|PILER-CR,CRISPRCasFinder
CTGTGCTTTGACTTCTTGTTCATCAGCTTGATACT
>1.20|1029426|37|NZ_CP009682|PILER-CR,CRISPRCasFinder
TCTTTAAATAAGATGCTGGCAAAAATTCAAGGAGAAA
>1.21|1029500|37|NZ_CP009682|PILER-CR,CRISPRCasFinder
CTGAGATGAAAGCTCTTGGTGATGAAGCTGAACGGGT
>1.22|1029574|37|NZ_CP009682|PILER-CR,CRISPRCasFinder
TTTAGTTTGCATTTTTACTATTTTATGTATTTTAGAT
>1.23|1029648|38|NZ_CP009682|PILER-CR,CRISPRCasFinder
ACGCAAGAAGTAACAATTTATCGCGATTATGCTTATAA

CRISPR arrays and Neighbor proteins around NZ_CP009682_1

CRISPR arrays

The CRISPR arrays of NZ_CP009682_1

>merge|NZ_CP009682|1|1028766-1029722|CRT,PILER-CR,CRISPRCasFinder
GATTATTTGGTATGTACTTGTGTTAGTTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTTTATTATTTGAATGCTTTGGTAGTATGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTATATTATTTGATACAATGTGTCCAACTAGAAACTTTTAGGAATAATTTACAAAATTAATTAAGTTTCAGTCGCTAAATTATTTGGTAAACTACTGTTAGATCATGGGACATATGGCGGTAGCACAGTCAATAGGTTTCAGTTGCTAAATTATTTGGTAAACTACTGTTAGTCAATGCTGTACTAGAAACTACATACAAACTATAGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGTGGTTCTACTGGTGGCGGTGGCACTGTCTCTTCGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGAAGGGCATGCAAATCAATGGAGAAGTTTCAACTAAGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGTATCAAAATATCTTTGTTTTGTACAACATAATGAAGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGCTGTGCTTTGACTTCTTGTTCATCAGCTTGATACTGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGTCTTTAAATAAGATGCTGGCAAAAATTCAAGGAGAAAGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGCTGAGATGAAAGCTCTTGGTGATGAAGCTGAACGGGTGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGTTTAGTTTGCATTTTTACTATTTTATGTATTTTAGATGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAGACGCAAGAAGTAACAATTTATCGCGATTATGCTTATAAGTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG

>NZ_CP009682|1|1|1028766-1029722|CRT
GATTATTTGGTATGTACTTGTGTT	AGTTTAAAGTAGCTAGAAAATTCACTTTTAGACCTACTTATTTT
TATTATTTGAATGCTTTGGTAGTA	TGTTGAGATCAACATTTTGCTGTAAAACTGTTTTCGTGATTA
TATTATTTGATACAATGTGTCCAA	CTAGAAACTTTTAGGAATAATTTACAAAATTAATTAAGTTTCAGTCGCTA
AATTATTTGGTAAACTACTGTTAG	ATCATGGGACATATGGCGGTAGCACAGTCAATAGGTTTCAGTTGCTA
AATTATTTGGTAAACTACTGTTAG	TCAATGCTGTACTAGAAACTACATACAAACTATAGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	TGGTTCTACTGGTGGCGGTGGCACTGTCTCTTCGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	AAGGGCATGCAAATCAATGGAGAAGTTTCAACTAAGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	TATCAAAATATCTTTGTTTTGTACAACATAATGAAGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	CTGTGCTTTGACTTCTTGTTCATCAGCTTGATACTGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	TCTTTAAATAAGATGCTGGCAAAAATTCAAGGAGAAAGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	CTGAGATGAAAGCTCTTGGTGATGAAGCTGAACGGGTGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	TTTAGTTTGCATTTTTACTATTTTATGTATTTTAGATGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG	ACGCAAGAAGTAACAATTTATCGCGATTATGCTTATAAGTTTCAGTTGCTG
AATTATTTGGTAAACTACTGTTAG

>NZ_CP009682|1|1|1028961-1029722|PILER-CR
GTTTCAGTCGCTAAATTATTTGGTAAACTACTGTTAG	ATCATGGGACATATGGCGGTAGCACAGTCAATAG
GTTTCAGTTGCTAAATTATTTGGTAAACTACTGTTAG	TCAATGCTGTACTAGAAACTACATACAAACTATA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TGGTTCTACTGGTGGCGGTGGCACTGTCTCTTC
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	AAGGGCATGCAAATCAATGGAGAAGTTTCAACTAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TATCAAAATATCTTTGTTTTGTACAACATAATGAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	CTGTGCTTTGACTTCTTGTTCATCAGCTTGATACT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TCTTTAAATAAGATGCTGGCAAAAATTCAAGGAGAAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	CTGAGATGAAAGCTCTTGGTGATGAAGCTGAACGGGT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TTTAGTTTGCATTTTTACTATTTTATGTATTTTAGAT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	ACGCAAGAAGTAACAATTTATCGCGATTATGCTTATAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG

>NZ_CP009682|1|1|1028961-1029722|CRISPRCasFinder
GTTTCAGTCGCTAAATTATTTGGTAAACTACTGTTAG	ATCATGGGACATATGGCGGTAGCACAGTCAATAG
GTTTCAGTTGCTAAATTATTTGGTAAACTACTGTTAG	TCAATGCTGTACTAGAAACTACATACAAACTATA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TGGTTCTACTGGTGGCGGTGGCACTGTCTCTTC
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	AAGGGCATGCAAATCAATGGAGAAGTTTCAACTAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TATCAAAATATCTTTGTTTTGTACAACATAATGAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	CTGTGCTTTGACTTCTTGTTCATCAGCTTGATACT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TCTTTAAATAAGATGCTGGCAAAAATTCAAGGAGAAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	CTGAGATGAAAGCTCTTGGTGATGAAGCTGAACGGGT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	TTTAGTTTGCATTTTTACTATTTTATGTATTTTAGAT
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG	ACGCAAGAAGTAACAATTTATCGCGATTATGCTTATAA
GTTTCAGTTGCTGAATTATTTGGTAAACTACTGTTAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP009682.1|WP_003033621.1|1020593_1021448_-|bifunctional-methionine-sulfoxide-reductase-B/A-protein	unknown	unknown	gnl|CDD|235499
NZ_CP009682.1|WP_071660302.1|1019394_1020597_+|multidrug-effflux-MFS-transporter	unknown	unknown	gnl|CDD|340878
NZ_CP009682.1|WP_003038939.1|1039639_1040191_-|putative-Fe-S-cluster-assembly-protein-SufT	unknown	unknown	gnl|CDD|213809
NZ_CP009682.1|WP_003036241.1|1027168_1028254_-|radical-SAM-protein	unknown	unknown	gnl|CDD|275338
NZ_CP009682.1|WP_071660307.1|1032040_1036930_-|type-II-B-CRISPR-associated-RNA-guided-endonuclease-Cas9/Csx12	cas9	cd09704_cas9_CAS-II-B	gnl|CDD|187835
NZ_CP009682.1|WP_071660304.1|1024139_1024892_+|RNA-methyltransferase	unknown	unknown	gnl|CDD|349968
NZ_CP009682.1|WP_071660303.1|1022045_1023998_-|BCCT-family-transporter	unknown	unknown	gnl|CDD|376718
NZ_CP009682.1|WP_071660306.1|1031103_1032060_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	gnl|CDD|187766
NZ_CP009682.1|WP_003042171.1|1040581_1041805_-|SufS-family-cysteine-desulfurase	unknown	unknown	gnl|CDD|131034
NZ_CP009682.1|WP_003016533.1|1038889_1039135_-|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl|CDD|235941
NZ_CP009682.1|WP_003026686.1|1030652_1030946_-|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl|CDD|378256
NZ_CP009682.1|WP_003033610.1|1026927_1027176_-|glutaredoxin	unknown	unknown	gnl|CDD|239510
NZ_CP009682.1|WP_071660305.1|1024986_1025955_+|linear-amide-C-N-hydrolase	unknown	unknown	gnl|CDD|225591
NZ_CP009682.1|WP_071660621.1|1030081_1030666_-|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl|CDD|273040
NZ_CP009682.1|WP_003019047.1|1021576_1022053_+|tryptophan-rich-sensory-protein	unknown	unknown	gnl|CDD|320706
NZ_CP009682.1|WP_003036243.1|1026481_1026931_-|acyl-CoA-thioesterase	unknown	unknown	gnl|CDD|223894
NZ_CP009682.1|WP_003016538.1|1040204_1040561_-|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl|CDD|223393
NZ_CP009682.1|WP_003038940.1|1037601_1038780_-|OmpA-family-protein	unknown	unknown	gnl|CDD|143586
NZ_CP009682.1|WP_003038947.1|1026115_1026469_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP009682.1|WP_003016535.1|1039139_1039628_-|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl|CDD|234674

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP009682.1|WP_071660306.1|1031103_1032060_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	pfam01867_cas1_CAS-I:CAS-II:CAS-III	6.4e-79	259.9	6.2
NZ_CP009682.1|WP_071660307.1|1032040_1036930_-|type-II-B-CRISPR-associated-RNA-guided-endonuclease-Cas9/Csx12	cas9	cd09704_cas9_CAS-II-B	0	1137.7	65.4
NZ_CP009682.1|WP_071660621.1|1030081_1030666_-|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	3.6e-29	96.9	0.8
NZ_CP009682.1|WP_003026686.1|1030652_1030946_-|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	1.4e-15	52.2	0.7

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP009682.1|WP_003033621.1|1020593_1021448_-|bifunctional-methionine-sulfoxide-reductase-B/A-protein	gnl|CDD|235499	PRK05550, PRK05550, bifunctional methionine sulfoxide reductase B/A protein; Provisional.	1.08131e-180
NZ_CP009682.1|WP_071660302.1|1019394_1020597_+|multidrug-effflux-MFS-transporter	gnl|CDD|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.91731e-74
NZ_CP009682.1|WP_003038939.1|1039639_1040191_-|putative-Fe-S-cluster-assembly-protein-SufT	gnl|CDD|213809	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.97481e-98
NZ_CP009682.1|WP_003036241.1|1027168_1028254_-|radical-SAM-protein	gnl|CDD|275338	TIGR04545, rSAM_ahbD_hemeb, heme b synthase. Members of this family are AhbD (alternative heme biosynthetic protein D), a radical SAM enzyme in sulfate-reducing bacteria and methanogens that performs the last decarboxylations to synthesize heme b from Fe-coproporphyrin III. Members include DVU_0855, previously included in error in TIGR04055, the NirJ2 family thought to be involved in heme d1 biosynthesis. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	1.99517e-139
NZ_CP009682.1|WP_071660307.1|1032040_1036930_-|type-II-B-CRISPR-associated-RNA-guided-endonuclease-Cas9/Csx12	gnl|CDD|187835	cd09704, Csx12, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	0
NZ_CP009682.1|WP_071660304.1|1024139_1024892_+|RNA-methyltransferase	gnl|CDD|349968	cd18095, SpoU-like_rRNA-MTase, SAM-dependent rRNA methylase related to SpoU-TrmH. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.47444e-52
NZ_CP009682.1|WP_071660303.1|1022045_1023998_-|BCCT-family-transporter	gnl|CDD|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP009682.1|WP_071660306.1|1031103_1032060_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.85389e-79
NZ_CP009682.1|WP_003042171.1|1040581_1041805_-|SufS-family-cysteine-desulfurase	gnl|CDD|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP009682.1|WP_003016533.1|1038889_1039135_-|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl|CDD|235941	PRK07118, PRK07118, Fe-S cluster domain-containing protein.	1.36021e-07
NZ_CP009682.1|WP_003026686.1|1030652_1030946_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	1.55305e-06
NZ_CP009682.1|WP_003033610.1|1026927_1027176_-|glutaredoxin	gnl|CDD|239510	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily.	1.16836e-12
NZ_CP009682.1|WP_071660305.1|1024986_1025955_+|linear-amide-C-N-hydrolase	gnl|CDD|225591	COG3049, COG3049, Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane].	2.11261e-69
NZ_CP009682.1|WP_071660621.1|1030081_1030666_-|CRISPR-associated-protein-Cas4	gnl|CDD|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.11528e-24
NZ_CP009682.1|WP_003019047.1|1021576_1022053_+|tryptophan-rich-sensory-protein	gnl|CDD|320706	cd15904, TSPO_MBR, Translocator protein (TSPO)/peripheral-type benzodiazepine receptor (MBR) family. This family contains tryptophan-rich translocator protein (TSPO), an integral membrane protein that is highly conserved from bacteria to mammals. In eukaryotes, it is mainly found in the outer mitochondrial membranes of steroid-synthesizing cells of the nervous system where it transports cholesterol into mitochondria. It is known to be highly expressed in metastatic cancer, steriodogenic tissues, as well as inflammatory and neurological diseases such as Alzheimer's and Parkinson's. TSPO is also known as the peripheral benzodiazepine receptor (MBR) and its ligands include benzodiazepine drugs, implicated in regulating apoptosis. In human, a single polymorphism A147T is associated with psychiatric disorders; the mutation causes structural changes in a region implicated in cholesterol binding. TSPO is homologous to bacterial tryptophan-rich sensory proteins, and their tryptophan residues are believed to be functionally important. In bacteria, TSPO acts as a negative regulator of expression of specific photosynthesis genes in response to oxygen/light; it catalyzes a photooxidative degradation of Proto porphyrine (PpIX). R. sphaeroides TSPO (RsTSPO) is involved in porphyrin transport, similar to human, while Arabidopsis translocator protein (AtTSPO) is regulated at multiple levels in response to salt stress and perturbations in tetrapyrrole metabolism.	4.01705e-41
NZ_CP009682.1|WP_003036243.1|1026481_1026931_-|acyl-CoA-thioesterase	gnl|CDD|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	2.54542e-26
NZ_CP009682.1|WP_003016538.1|1040204_1040561_-|iron-sulfur-cluster-assembly-accessory-protein	gnl|CDD|223393	COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones].	1.01145e-25
NZ_CP009682.1|WP_003038940.1|1037601_1038780_-|OmpA-family-protein	gnl|CDD|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	3.95316e-21
NZ_CP009682.1|WP_003016535.1|1039139_1039628_-|pantetheine-phosphate-adenylyltransferase	gnl|CDD|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	3.14569e-85

Protein sequences

>NZ_CP009682.1|WP_003036241.1|1027168_1028254_-|radical-SAM-protein
MKHQLKWMAWETTRRCNLKCVHCRSSSECEVLGHPDFSTEEGFRIIDSIVAFANPVLVLSGGEPLLRADIFELAEYGANKGLRMALATNGSLVTDEICEKIKNTNISIVSLSIDGATAATHDDFRNQKGAFEATINAAKLFRKHDIPFLINSSFTKRNQHEITDVYKLAKSLEATAWYLFMIVPTGRGEELIQELIDIDDYQDILNWHYDIEADEQDMLVRPTCAPHYYRIRFERNKEDNAKVRSRALSFGTGGGKGCIAGQSICLLDVDGNIYPCSYLPVSAGNIKEKSFADIWQNSNVLEDMRNFSAYEGKCGACEFIKICGGCRARAYNIHGNYLAEEPFCNHVPIRMRNTEEKQSNE
>NZ_CP009682.1|WP_003033610.1|1026927_1027176_-|glutaredoxin
MNNFKSIVLYRMVTPEKICPYGLKAKALFEQKGWSFEDNHLKTRAETDAFKAKYNLQTTPLIFIDGQQIGGYSDLLEFLGEK
>NZ_CP009682.1|WP_003036243.1|1026481_1026931_-|acyl-CoA-thioesterase
MNQQLKYFVLSTQVLPEHIDPNKHLNNIVYLQWMQDVAIAHVKANGVFELTESQGLTWFARKHTIEYLSQGFLGDDIAVVTWVESITKISTFRKYHIYRKSDKTLLCKADTLWVMVNAHRGKPAKIPTELVEIFDKYNNFEIDDIKNLI
>NZ_CP009682.1|WP_003038947.1|1026115_1026469_+|hypothetical-protein
MSKCKTHQNHEHKHQDDCGHTKIKHGDHYDYLHDGHLHHEHNGHYDEHTLEVTEKNPDGCHPIKEDCSSHVHGPNCGHEAVPHGDHIDYIVDGRLHHPHGDHCDDHGPVEVIKNDKK
>NZ_CP009682.1|WP_071660305.1|1024986_1025955_+|linear-amide-C-N-hydrolase
MLKKILITPLIILSFLQFSFGCTWFSFENDKGHYFIGRTMEWPGDLNTKITLVPRGYKFGNFTTHYGFVGMSHNGNFSDGMNEYGLAVSALWLSGSKYPDKKDADYNITMLLPYVLGNTTTVAQAVEFIKKHKFYTSVLPEISDKVEITVHFAISDAQGNSVVVEFINGKTKIYDNKIKVLTNDPAYDEQLKLLKKYQDREIKEDKFIAFDYSPQGRFAKMVAFNNTKANTPDDLTAVNHAWSMINTVDIPQGSLYWRWVSSKPQFTSYSVVDDLSNRVYYFRTWDNYDIRKVDLSKIDFAKAKYQADTIFGQADYQEFKFK
>NZ_CP009682.1|WP_071660304.1|1024139_1024892_+|RNA-methyltransferase
MKNLSQKLYKEIKKLHSSQGRKKSQYYVIEGLRCSQEALKRLPQQQIIAILVTEKADNPNYPLNKKYIITEKDFEALSQTQNPQGVLILAEKPKLEELSFSDDFILVLDRIQDPGNIGTILRTAIAVGLKEVILINGTVDPFNPKAIRAGMGAQFSLKFNYITNLAELKNIAKLQQRKIWLTTPHQGVSCYAKEFKLANSILVFGEEANGIEDFSVGQKTMIPTLSDIESLNVAQAATIYLFEGLRQRLR
>NZ_CP009682.1|WP_071660303.1|1022045_1023998_-|BCCT-family-transporter
MQRKKGAYAPVFYPAIVIAAILSLLGVLVPVAFANNIEIIQNLILEKFGWAYILAMSFFVCLCLILMFSRFGDIKLGQDHELPEYTNLSWFAMLFAAGMGIGLMFYGVAEPLNHFLSPPNLSPDSLEMVKQAMNTTFFHWGIQAWSVYAVVGLSLAYFAYRHDLPLLPRSVLYPILGDKIYGVIGHAIDIFAILGTLFGVATSLGFGAMQVSSGISFLTGIADTQNMQVLYIIIIVALATISVALGLDKGIKALSNLNIVLAILLLAFILFLGNTAGLIRDYIQNIGYYLSTIVNQTFNLYAYNQDNQQWLKKWTLFYWGWWIAWSPFVGMFIAKVSKGRTIRQFIIGVLFIPVGFTFLWMTVFGNSAIEIVMTGKAQDLINAANNNIPVALFEFLQHFPFATILSVLAVLLVVTFFVTSADSGALVIDILATGNAQTSITVQRIAWSVLGGLLAISLILAGGLQALQSATIISAFPLLFILFLMAISLIKSLRLDYLRIKSIQTHSTVVQYVKADTSWQKRLSAIAAKPTKTQAIEFLQQVVTPAVLEVATEMQKNAINTEITKDDEHVQLIIRIESGDDFIYSVMLRSYQTKADNDTYNRVEVLLGHGGQYYDIIGYSKEQVIADIINQYDKHLHYLHLAVADKDIVN
>NZ_CP009682.1|WP_003019047.1|1021576_1022053_+|tryptophan-rich-sensory-protein
MSQFKITNLISLVLFIIVILTIGYFVGMITSINIPSWFIYLESPFFAPPNWVFAPVWTILYIMIAISGWLIFQQHQLKQKAFIVYVIQLGLNFLWSFIFFCWHNIDLALLEMSILWVFVAWNIIIFRQINNLAGYLLVPYLLWISFAWILNFSYAVLN
>NZ_CP009682.1|WP_003033621.1|1020593_1021448_-|bifunctional-methionine-sulfoxide-reductase-B/A-protein
MLKTKSLTPHEYDIIINKATEKPFTGRYNDLDQKGVYICRNCGTPLFRADSKFISACGWPSYDIHIDNNVKQLPDADGRRTEILCNNCDGHLGHIFHGEGYTKLNTRYCVNSACVDFIPIEDFGTTEEIIVAAGCFWGVEYYMKKLPGVLFAESGYCGGDQPYPDYKKVCQGDTGYLEVVRVIFDTSKVSLQQVLKYFFEIHDFEQVDGQGPDIGEQYKSAIFYYDDKQKQIAEDLKQILAQKGYKVATEIRAMKPYYVAEDYHLDYYMKKGTLPYCHSHKKIF
>NZ_CP009682.1|WP_071660302.1|1019394_1020597_+|multidrug-effflux-MFS-transporter
MFGIRKGSKYLIFFVVIFVALPPFAIDAYIPAFGNIADFFNVNVNKVAITVSTYVVGFGIGMLFWGALSDRFGRKKILTIGMLIYIVSSILCSLTHSFDTLILMRFLQGLGDSPAGVAAMAVLKDCYRGQKLMKMMATMVMVFMLAPIVAPIIGSLIIYTTGSWQDIFHFLTIYGVILLILTLIMPETHPSYKRSKNLVISFKTYLNHFMNIPFIFGGLTGGLCFGALFSFITASSNLIIGYFHLGYTQYCILFGLNICGVVFASNYIRRKITAHNQRKLILNGYYFAIIITIINILSSYIFDNIYIFIFLNALLTIGLAFVNITTTSKVIDLLKEGFAAGNAVIRLVKFTVAGTAGFFLSFLSISKLMIGIPAQQLGFIVASLCLFLLIKHRLFPNQYH
>NZ_CP009682.1|WP_071660621.1|1030081_1030666_-|CRISPR-associated-protein-Cas4
MDIFDNDLSIPVNLIRQWCFCPRIVYYQELLAIKPNKPLWVAQGEEFHKKVEQLEKRRSFSRYGLENAIRHFNLSIKSQKYKLHGIVDWVIETDTNVYVVEYKTNPNPNSLGHKLQITAYALLVQEYFAKPCKITFLTSDKKSYEIKITDELINKLIKTISDILSTLDSGNKPDSSATDHQCIQCEYYNFCNDR
>NZ_CP009682.1|WP_003026686.1|1030652_1030946_-|CRISPR-associated-endonuclease-Cas2
MQLRKEYLIAYDIEDNKTRTIIYKQLLAYGLKAVQKSVFWGYVSIAELNAIKRLFDSSLTISDKVFITRVNMHEQKLDYSFGYDDKTFKDWDEYGHI
>NZ_CP009682.1|WP_071660306.1|1031103_1032060_-|type-II-CRISPR-associated-endonuclease-Cas1
MKHLIISEYGIYLGLESGRLVVKNKDDKKYFPLNRLATLSIAKKGVSFSSDLVEQFSLRGIKLFFLDFRGVAHSMLVGANQHAVVQARINQYRYIDRNALTLSIKLIAAKIKNQRATLNYFNKHHKSINLLNAIEELKRVAQLIKNAKTLNDVLGYEGYAANIYFSSLAKDKFLSASFANREGRGSREIANSMLNFGYAILSSYILNAITNAGLEPYLGFLHQKRPGKMSLVLDLMEEYRAWVVDRVVIKLREQYKNKQYIDTKLKSILISEIQATIAKKYIYNGKKLKLEHIIQRQVYRLSGEFAGEHNYKPYIFKW
>NZ_CP009682.1|WP_071660307.1|1032040_1036930_-|type-II-B-CRISPR-associated-RNA-guided-endonuclease-Cas9/Csx12
MNFKILPIAIDLGVKNTGVFSAFYQKGTSLERLDNKNGKVYELSKDSYTLLMNNRTARRHQRRGIDRKQLVKRLFKLIWTEQLNLEWDKDTQQAISFLFNRRGFSFITDGYSPEYLNIVPEQVKAILMDIFDDYNGEDDLDSYLKLATEQESKISEIYNKLMQKILEFKLMKLCTDIKDDKVSTKTLKEITSYEFELLADYLANYSEILKTQKFSYTDKQGNLKELSYYHHDKYNIQEFLKRHATINDRILDTLLTDDLDIWNFNFEKFDFDKNEEKLQNQEDKDHIQAHLHHFVFAINKIKSEMASGGRHRSQYFQEITNVLDENNHQEGYLKNFCENLHNKKYSNLSIKNLVNLIGNLSNLELKPLRKYFNDKIHAKADHWDEQKFTETYCHWILGEWRVGVKDQDKKDGAKYSYKDLCNELKQKVTKAGLVDFLLELDPCRTIPPYLDNNNRKPPKCQSLILNPKFLDNQYPNWQQYLQELKKLQSIQNYLDSFETDLKVLKSSKDQPYFVEYKSSNQQIASGQRDYKDLDARILQFIFDRVKASDELLLNEIYFQAKKLKQKASSELEKLESSKKLDEVIANSQLSQILKSQHTNGIFEQGTFLHLVCKYYKQRQRARDSRLYIMPEYRYDKKLDKYKNTGRFDDDNQLLTYCNHKPRQKRYQLLNDLAGVLQVSPNFLKDKIGSDDDLFISKWLVEHIRGFKKACEDSLKIQKDNRGLLNHKINIARNTKGKCEKEIFNLICKIEGSEDKKGNYKHGLAYELGVLLFGEPNEASKPEFDRKIKKFNSIYSFAQIQQIAFAERKGNANTCAVCSADNAHRMQQIKITEPVEDNKGNIILSTKAQRLPAIPTRIVDGAVKKMATILAKNIVDDNWQNIKQVLSAKHQLHIPIITESNAFEFEPALADVKGKSLKDKRKKVLERINSENIFKDKNNRIKEFAKGISAYSGDNLASGDFDGAKEELDHIIPRSHKKYGTLNDEANLICVTSGDNKNKGNRIFCLRDLANNYKLKQFETTDDLEIEKKIADTIWDANKKDFKFGNYRSFINLTPQEQKAFRHALFLADENPIKQAVIRAINNRNRTFVNGTQRYFAEVLANNIYLRAKKENLNTDKISFDYFGIPTIGNGRGIAEIRQLYEKVDSDIQAYAKGDKPQASYSHLIDAMLAFCIAADEHRNDGSIGLEIDKNYSLYPLDKNTGEVFTKDIFSQIKITDNEFSDKKLVRKKATEGFNTHRQMTRDGIYAENYLPILIHKELDEVRKGYTWKNSEEIKIFKGKKYDIQQLNNLLYCLKFVDKPISIDIQISTLEELRNILTTNNIAATAEYYYINLKTQKLHEYYIENYNTALGYKKYSKEMEFLRSLAYRSERVKIKSIDDVKQVLDKDSNFIIGKITLPFKKEWQRLYLEWQNTTIKDDYEFLKSFFNVKSITKLHKKVRKDFSLPISTNEGKFLVKRKTWDNNFIYQILNDSDSRVDGTKPFIPAFDISKNEIVEAIIDSFTSKNIFWLPKNIELQKVDNKNIFAIDTSKWFEVETPSDLRDIGIATIQYKIDNNSRPKVRVKLDYVIDDDSKINYFMNHSLLKSRYPDKVLEILKQSTTIEFESSGFNKTIKEMLGMTLAGIYNETSNN
>NZ_CP009682.1|WP_003038940.1|1037601_1038780_-|OmpA-family-protein
MRLKSIVIATTVLLGSATASIAAGSDNIDTSANTNSATTQSSGFAANNFIAPFANTYSALTNKDNTWGPQDRTGQWYLGVDANGLAGTPNSPSGAGANFTIGYNINKYFAVQYNQLVGRVFAGLGEGVVNFSNNTMFTPYAAGGAGWANLAGQATGAWDVGGGLKFELSRNVQASVDYRYIQTMAPSNISGANGRAGTNMIGAGLTWFFGGKDTTNNDTGNIQDNGATTAAQTVAMPTIDESKYVLPAGIKQCEGNFNLTEDGVACYTVNGDDVTVYLDTKFAYDKATLNAKGKKAIASFVNFIKDSNIGSVTVKGYASQGQTGSEFDIYNQKLSEKRAQAVADYMKQLGLDSEKIITKGFGYDDTLGGIPKSDPRNQRVEASVSAPLKEAN
>NZ_CP009682.1|WP_003016533.1|1038889_1039135_-|YfhL-family-4Fe-4S-dicluster-ferredoxin
MALLITDECINCDICEPECPNEAISQGEEYYEIDPNKCTECVGHFEESQCTKVCPIRCIIIDPNNIETHQQLLDKYNSLVS
>NZ_CP009682.1|WP_003016535.1|1039139_1039628_-|pantetheine-phosphate-adenylyltransferase
MNKIAIYPGTFDPITNGHVDLVERALNIFDEIVVAVSTAYGKNTLFDIRIREQMIKEVFKDNQRVKVVSFQGLLVDTAVKHNACAIVRGLRAVSDFDYEFQMSSMNNKLNSDIQTIFLTPSEKFSCISSTLVRAVAIHNYKRVDEFVPECVFREIKLKYSKE
>NZ_CP009682.1|WP_003038939.1|1039639_1040191_-|putative-Fe-S-cluster-assembly-protein-SufT
MKPTDVTIIRRQVKAIAVPFGNEIELMPGQEVLVTQDKGGSFTLNVNGNLLHLDGKDADAIGKQIVRYPVEGYDIKPGDPINMDAIWDQMRTVYDPEIPVNIVDLGLIYNIVTRKLENGNFHVIIDMTLTAPGCGMGPVLMTDVEKRVAMLPNVDKVDVVMVFDPPWNSEMMTEAAKLELGLF
>NZ_CP009682.1|WP_003016538.1|1040204_1040561_-|iron-sulfur-cluster-assembly-accessory-protein
MVEVFDPNASSILEVTDAAAKHFKKHLDKHDGCIGIYVGTKVMGCSGLAYDVDFVKQQPQDTQKVQQHGINFFVSNKSMDFLNGLKIDYVKHDFGLYKLEYTNPNESARCGCGESFTV
>NZ_CP009682.1|WP_003042171.1|1040581_1041805_-|SufS-family-cysteine-desulfurase
MYDVNKIRQDFPFLAQKINNKSVLFFDTGASAQKPQAVIECVAEAYAYNYANVHRGVYSLSQEASEKYENVRQIAQKFLNSKSADEIVITKGTTEAINLVASSIGKGIIRSDDEIVVTEMEHHANFVPWQMLCEDKNLDFKVAAVKDNGELDIDNLLALVTAKTKILAITLCSNVLGTINPVKEIIKQVREINPNIIVLVDGAQAVIHTKVDVQDLDCDFFVFSGHKLYGPTGVGILYGKYELLKQLPPYNYGGDMVDEVTIAKTTFALPPYRFEAGTPNIVEAIGLGRAIEYVDSIGMINIEKHEQKLLEYATTELNKIDGLTIFGQAKHKAGVITFDIQGCNAGDIGELLAIKGICVRTGKHCAHPLMYRMGVTSTVRMSFGMYNTFEEIDLFIIALKKVISQLK

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	MK373771	Escherichia phage vB_EcoP_R4596, complete genome	2051-2084	8	0.765
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	NC_047769	Escherichia virus AAPEc6, complete genome	1770-1803	9	0.735
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	MK373773	Escherichia phage vB_EcoP_KAW1A4500, complete genome	2546-2579	9	0.735
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	NC_019403	Enterobacteria phage vB_EcoP_ACG-C91, complete genome	2495-2528	9	0.735
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	AX384854	Sequence 3 from Patent WO0207742	1725-1758	9	0.735
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	KY435490	Escherichia virus K1E, complete genome	39960-39993	9	0.735
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	MH729818	Escherichia phage LL11, complete genome	1843-1876	9	0.735
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	AY370674	Enterobacteria phage K1-5, complete genome	1983-2016	9	0.735
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	NC_047889	Escherichia virus mutPK1A2, complete genome	2306-2339	9	0.735
NZ_CP009682_1	1.18|1029282|35|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029282-1029316	35	CP003185	Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome	25718-25752	9	0.743
NZ_CP009682_1	1.18|1029282|35|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029282-1029316	35	NC_019956	Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence	85947-85981	9	0.743
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	ACSJ01000018	Clostridium phage D-1873 CLG.Contig169, whole genome shotgun sequence	6114-6147	10	0.706
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	NC_007581	Clostridium phage c-st, complete genome	89111-89144	10	0.706
NZ_CP009682_1	1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder	1029069-1029102	34	AP008983	Clostridium phage c-st genomic DNA, complete genome	89111-89144	10	0.706

1. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to MK373771 (Escherichia phage vB_EcoP_R4596, complete genome) position: , mismatch: 8, identity: 0.765

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gcgaggaagtgctaggaactacatacaaactatt	Protospacer
 *.* *  **.****.***************** 

2. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to NC_047769 (Escherichia virus AAPEc6, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggcactacatacaaactatt	Protospacer
 ..* *  *******. **************** 

3. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to MK373773 (Escherichia phage vB_EcoP_KAW1A4500, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggaactacatacaagctatt	Protospacer
 ..* *  *******.************.**** 

4. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to NC_019403 (Enterobacteria phage vB_EcoP_ACG-C91, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggaactacatacaagctatt	Protospacer
 ..* *  *******.************.**** 

5. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to AX384854 (Sequence 3 from Patent WO0207742) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggcactacatacaaactatt	Protospacer
 ..* *  *******. **************** 

6. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to KY435490 (Escherichia virus K1E, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggaactacatacaagctatt	Protospacer
 ..* *  *******.************.**** 

7. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to MH729818 (Escherichia phage LL11, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggcactacatacaaactatt	Protospacer
 ..* *  *******. **************** 

8. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to AY370674 (Enterobacteria phage K1-5, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggcactacatacaaactatt	Protospacer
 ..* *  *******. **************** 

9. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to NC_047889 (Escherichia virus mutPK1A2, complete genome) position: , mismatch: 9, identity: 0.735

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
gtgaggaagtactaggaactacatacaagctatt	Protospacer
 ..* *  *******.************.**** 

10. spacer 1.18|1029282|35|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to CP003185 (Thermoanaerobacterium saccharolyticum JW/SL-YS485 plasmid pMU3262, complete genome) position: , mismatch: 9, identity: 0.743

tatcaaaatatctttgttttgtacaacataatgaa	CRISPR spacer
aataaaaatatctttgttttgtataaaaccatctg	Protospacer
 ** *******************.** *. **  .

11. spacer 1.18|1029282|35|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to NC_019956 (Thermoanaerobacterium thermosaccharolyticum M0795 plasmid pTHETHE01, complete sequence) position: , mismatch: 9, identity: 0.743

tatcaaaatatctttgttttgtacaacataatgaa	CRISPR spacer
aataaaaatatctttgttttgtataaaaccatctg	Protospacer
 ** *******************.** *. **  .

12. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to ACSJ01000018 (Clostridium phage D-1873 CLG.Contig169, whole genome shotgun sequence) position: , mismatch: 10, identity: 0.706

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
ttgtgatagtattataaactacatacaaactaaa	Protospacer
*..  .. ***.** ***************** *

13. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 10, identity: 0.706

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
ttgtgatagtattataaactacatacaaactaaa	Protospacer
*..  .. ***.** ***************** *

14. spacer 1.15|1029069|34|NZ_CP009682|PILER-CR,CRISPRCasFinder matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 10, identity: 0.706

tcaatgctgtactagaaactacatacaaactata	CRISPR spacer
ttgtgatagtattataaactacatacaaactaaa	Protospacer
*..  .. ***.** ***************** *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	86264 : 95719	9	Staphylococcus_phage(42.86%)	tRNA	NA
DBSCAN-SWA_2	380331 : 389931	9	Enterococcus_phage(16.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP009682|86264:95719|DBSCAN-SWA
TATGAAAAATATCAGAAACTTTTCGATAATTGCGCATATTGACCATGGTAAGTCTACTCTTTCAGACAGGTTTATACAAGTCTGTAATGGTCTAAGTGAGCGTGAAATGAAAGAGCAGGTTCTTGATTCTATGGATATAGAAAGAGAGCGTGGGATTACGATTAAGGCGCAATCTGTGACGCTTGACTATACAGCTAGAGATGGCCAAACATATCAGCTTAATTTCATTGATACACCAGGACACGTTGATTTCTCTTATGAGGTGTCGCGCTCATTAGCAGCTTGTGAAGGAGCTTTACTTGTAGTAGATGCCGCTCAAGGCGTAGAAGCCCAGACAGTAGCAAACTGTTATACTGCCATTGAGCAGAATTTAGAGGTTATACCTATATTAAATAAAATTGATTTACCTTCTGCAGAGCCGGATAGAGTAGCTCAAGAAATTGAAGAAATAATCGGTATTGATGCTACAGGGGCTACTACATGCAGCGCGAAGACAGGTATCGGTGTAGAAGATGTTTTAGAAACTATTGTTGCTAAAGTTCCAGCTCCTGAAGGTGATGTTAATGCAAAGCTGCAAGCTTTGATTATAGATTCATGGTTTGATAACTATCTTGGCGTGGTTTCACTTGTCAGAGTCAAAAATGGTACCATCAAGAAAGGTGAAAAGTTCAAGGTTATGTCAACAGGAGTTGCTTATCAGGTTGATAGACTCGGAGTATTTACGCCGAAAATGAAAGACCTAGATCATCTCAAAGCAGGAGAGGTCGGTTTTATCGTTGCTGGGATTAAGGATATTCACGGTGCACCAGTTGGTGATACGCTCACTCATGCACATAACCCAACAGATAAGCCTGTACCTGGATTTAAAAAGGTTCAACCTCAAGTTTATGCAGGGATGTTTACTATAAGTTCTGACGATTATCCTGATTTTAGAGAAGCTCTCGAAAAGTTAAGTTTAAATGATGCGTCACTATTTTTTGAGCCAGAGGTATCACAAGCTTTAGGTTTTGGCTTTAGATGTGGTTTCTTGGGTATGCTACACATGGAGATTATTCAAGAGAGATTAGAAAGAGAGTATAACCTTGATTTAATCACTTCTGCACCAACAGTTGTTTATAAAGCTATTAAGAAAGATGGTGAAATTATCGAAGTTGATAATCCATCTAAACTACCAGAGCCAGGAGCGATAGCTGAAATACAAGAGCCAATTGTAAGGGCAAATATTCTTGTGCCAAAAGATTATGTTGGTAGTGTAATTACTATCTGTATTGAAAAAAGAGGTGTACAGGTTGATCTTAATTATGTGGGGAATCAAGTTTCTATAACTTATGACCTACCAATGATTGAAGTTGTGTCTGATTTCTTTGATACTCTTAAATCTGTAACGAAAGGTTATGGATCATTAGATTATGAGTTGATTCGTTATGAGCCAGCGAATATGGTGCGTCTAGATGTGCTCATAAATGGCGATAAGGTTGATGCATTAGCAAGTATTGTGCATAAAGATCAGGCTAAATACAAAGGTAGAGAACTAGTTGAGCGTCTCAAGGAGTTGATTCCTAGACAAATGTTTGAGGTCGCAATTCAAGCAGCTATAGGTGGAACTATCGTTGCAAGAAGTACAGTTAAAGCATTGCGTAAGAACGTTTTAGCGAAATGCTATGGTGGTGACGTTTCACGTAAGAAAAAACTATTAGAGAAGCAAAAAGAGGGTAAAAAGAGAATGAAAAATATTGGTTCTGTTGAAATTCCTCAAGAAGCTTTTTTATCAGTGCTTAAAAAATAAAATTAGAGTTATTATGGAAAATAAAAAAGTAATAGTAGGTATCTCAGGAGGTGTGGACTCATCAGTTTCAGCTTTGCTCTTGAAACAGCAAGGTTATGATGTAACAGGTGTTTTTATGAAAAACTGGGAAGAAGATGATACAGATGAGTTTTGCTCAGCGGAGCAAGATATCGCTGATGCTCAAGCTGTTTGTGATTCTATAGGTATTCCATTTAAGAAAATAAACTTTGCTGCAGAGTATTGGGATAATGTTTTTGAGCATTTTCTAATAGAGTATAAAGCTGGTAGAACGCCTAATCCTGATATCTTATGCAATAAGGAAATTAAATTTAAAGCTTTTTTGAGCTATGTGCACTTATTAGGTGGAGACTATATTGCTACAGGACACTATGCTCGTACAAGAGTTCTAGAAGATGGTTCTGTACAATTAGTTAAGGGTCTTGATGATAATAAAGATCAGACATATTTTTTATATACACTAGGTCAAGAGCAACTTAGACAGACGATATTTCCTATAGGCAATATTGAAAAATCTAAAGTGCGTGAAATTGCCAAAGAAAATAACCTAGTAACATTTGATAAAAAAGATAGTACAGGTATCTGCTTCATTGGTGAGCGTAAGTTTAAAGAATTCTTGTCTAAGTATTTACCTGCTCAAAAAGGTGAAATCCATGATGAAAATGGCATTAAGATTGGTATGCATGATGGATTGATGTATTATACAATTGGTCAAAGACAGGGGCTTGGTATAGGCGGTGTAAAAGATCGCCCTGAGGTACCGTGGTTTGCAGCTAAAAAAGATTTAGAAAACAATGTCTTGATTGCTGTGCAAGGACACGATCATCCACTACTATTTAAGCAGTCACTACAAGCTATCGAGCTAAGTTGGGTTGCAGGTATGGCTCCAGCAGATAAATTTAGATGTGCAGCAAAAGTCCGCTATAGACAAAAAGATCAGTCTTGTGAAGTCGAAGTAAATCAAGATGGTTCAGTTAATGTAACTTTTGATCAGCCACAAAGAGCAATCACACCAGGACAGTCAGTAGTATTTTATATTGATGATGTTTGCTTAGGTGGGGGAGTAATTATTTAGGATTACTTATTTAATTTCTATTTATTGTCACTTGCTAGAGTTGTTTTTGGAGTATCATTGCTATCAACTTGAGTGGTTGAAGCAGTTTTTGTGGCTGTTTGTATTGTACTACCACTACTTTCTTGATTAATAGGCTTTTTCGCTATAGTACTAATACTACTACCACTTGCTAGTGTGGTTTCTTTGTCTTCGCGTTGCTCATCGGCTTTAGTTATTAGATCGTTATCTAACGCGGCAACACTACTTGCGACCTCTTGGTGAGTGTAGCCAGTATCTTTTTTATCTTTATCGACAACATCTTTAAGATAGTCATCAACTTTCTTTTTGACATTTGTTTGACTCTTCATAACATCTCTCTGCATGAATTGAGCTTCATGGACAGTGTCAATAGTCATATGTGTATACAAGTATTCTGGATCAATAATAAATGGTCTAAGCTCGGTACTATACTCTTTCTCTAAGCCAGGAAAATCAACAGTATAAGCAACTTTTATGCGTTTCTTACCTTCTTTGTCATTAACAACCATCGCTACAAGATTTGAATCTATTTCATATTCTTTTCTGACAAGGTGATATTGTTGCTTTCTATCAAGGACAATCTGTCTAACTGGAGTTGCAAAAACTTTTTTAGTTTTAATCGGTTTATTAACTGTTGTAACACCAGCTTTTTGTAACTCTTCAATAGCGTAGTTTCCATAGTCGTCCTTAGCAAGTCTAACATCTATTTCAATCATCTTAGCTAAAACATATTCTCTAAATTCACGAGCTTGTTTTAATGTAAATGCTAGACAAGTACCAGTATCATCTTTCTGGAAACAGCCATTTCTCTTATCAATTAGCACGAAAAGTTTTTGTGTCTTATCATAATAGAGCTGATAGTCAGGAGAGTTCTCACCATGACCTAGATAAACAAACTGGTCGTTAGATAGCATACCACATGATGCTATAATTACGCTTAGTAATAATATTAATAATGTTTTTTTGAATATATTGCGCATACTAAATTTCCATGATTTAATAACAATTACAGGAGATAATTTTTGCGTAATGCTGCTAAAAAGTAAAGTATTGATTATACAAAATAATCAAAAATTAACTCTTAGCATTTTCTTGCATTAGTTTTTTATACTTTTTCTCTATCATTTTGCGCTTTAGTGAACCAAGGTGATCAAAGAAAGTTATACCATTAAGATGATCTATCTCATGTTGGATGCAACGTGCCAGAAAGCCATCTTTCTCAATTTCAATTTCATCACCAAATTCATTAAGTGCCTTTATTTTGACTGTAGTTGCTCTATTTACTTTTGCTGAAACACCAGGAAAAGAAAGACAGCCTTCTTCATCAATTATTTTACCACTTTGCTCAATTATTTCAGGGTTAATGATAGTGATTATTTTAGGGTTTTGCTCTTCTAAGTTATCGTACATGATAAAGAACCTTTTTTTGATACCAACTTGTATTGCTGCTAAACCCACGCCATTTGCTTCTAGCATTAGCTCATGCATTTCAGCAATAGTTGCACGTAAATCATCATTGATTTCATCTTTTGTAACTTCTTTGGCAACCTCTTTTAAAACTGGGTGAGGGTACTTTAGAATTTCTAAAGACATATTCATACTCCTTGTTTTAATATATCTTTTTTCATCTTTGCCATCGTTATGGCAGCTTGGACAGAGTACTTACCTTTGTGACCTTTTTTGCCACCGACTCTTTCTAGAGCTTGCTCTTTGTTGTGTGTGGTTAATATACCAAAAATTACTGGTAAATTATATTGGTGCATGACTTTTTGTGTACCATAACTTACCTGATCGCAAACATAATCATAGTGATCTGTCTCGCCTCGGATTACGCAACCTAGTAGCACTATTGCATCAAATTCTTTAGTTTCTGCTATGAGCTTTGCTGCATATGGAAGTTCAACTGCACCTGGAACTTTTTTGATACAAATTTGACTATCTTTTAAGCCTTGAGCATATGCTTCTTCTAATGCACCCTCAAGCATTTTATCAGTTATCAAAGAGTTAAATTCACTTACAACGATTGCTAATTTTCTCATAATTTATACCTATATTCCTTTAATTGTATGTTTTGCTTTAATTTTTTTGGTTATCAAGTAGTTTCTATTGTGAGAGTTTACAAATGCCTCACAATATACTGGTTCTGTTTCTATATCAACGTTTCTAAGAGCAGCTAGCTTTTCAGGATTATTAGATATTAATCGGCAGCGGTTGACATTGTTATATTTTAGGACTTGTATAGCTAGATCGTATTTTCTTGCATCAGCGGGTAAGCCAAGAGCTAAATTAGCTTCAAGAGTGTCCATATTTTCATTCATTTGCAAATTATAGGCTTTAAGCTTATTTGTTAAACCAATACCTCTACCTTCTTGGTCAAGATATATAAAAAAGCCACCCTCTTCGCTAATCATTTCAATTCCTTTATGTAATTGATCTTGGCAGTCACAGCGTAGCGAGCCAAAAATATCTCCTGTTATGCAAGATGAATGCATTCTTACTAAAGGATTATTACCAGAATAAGGTTTAGATAAAACAACAACCTCATCACCACTGAAGTTATCTTTATACACACTCATTTCCAATTCGCCAATTTTCTTGAATGGTATAGTAGAGCTTGCCATTTTCGTGACAAAAATTTCAGTTGCTAAACGATATTGGTAAAGCTCCGCAATAGTTAAAAGAGGCAGATCGTGCTTTTTAGCAAATGTTTCTAGTTCAACAGCTTTCATCATGGTGCCATCTTTATTCATCAGCTCACATAGAACTCCAGCACTATTAAAGCCACTTAGTTTCATCAGATCAACAGTTGCCTCAGTATGACCATTTCTACCAAGTACGCCTTTATCATTGGCTATAAGAGGGAATATATGTCCAGGTCTAGCTAATTCTTCTGCTTTAGCATCAGCTTTTGATGCAACTTGAATAGTATGTGCTCTATCCTTTGCCGATACTCCTGTAGTTACGCCTTCTTTAGCTTCTATAGTTACAGTAAAAGGAGTTGTAAAAGTACTATTGTTTTGGTCAGCAGCTACCATTGGCGTTAGATTTAATTCTCGTGCTTTCTTTGAGTCCATTGCCAAACAAATGATGCCACTTGTATGCTCAAGCATAAATGCGATATTTTCTTCTGTGGCTTTTTGACCTGGTAGAATTAGATCACCCTCATTTTCTCTATCATAATCATCAAGTACAACTACGGGTTTGCCTTGCTTAAGAGCTTCTATGGCATTCTCAACATTATTTTTTATTTGCTCAAACATTTTCTTTAAATCCTTGTATATATTTATAGATATATTTACCTGTTGCATCAGCTTCAAGATTTACCATAGAACCATTACTATAGTTTTTTGCGATAGTAACTTCAATGGTGTGAGGTATCAAAGTTACAGTAAATGAATCTTTGAGTACATTTATTACAGTTATACTCATACCATCTATGGTTACAAAACCTTTCTTTACTAAGTATTTTAGAAATTCTCTAGAAGCAGAAATTTCAATTAACCATGCACCACCGACATTTTGAATACTTTTGATTTGCCCTGGTTCATCAATATGACCTTGTACCATATGCCCACCAATATGATCACCATAGCGCATTGCAAGTTCGATATTTACTAGTTGGTTCTCCTTAAGAGTATCAAGATTAGTTTTTTTAAGTGTCTCTGGTACCGCATCAAAATTAGCTGTTAAGTTTTGCTTATCAAGTTTTGTAACAGTAAGACAGGTACCATTAATCGCAACACTATCACCAATGCTACATTGAAGACTATTATCAAATTTGATACAAAAAGTTTTTAGACTATCTTTAGTTGTTATTTTTTTAATTGTTCCTAGTTGCTGAACTATGCCACTAAACATTAGAATTTTCCTTAAAACAAGAGTTTATTATTATATCCTCTCTTACAGAGATTTGATTGAAGCTTAGCTGCTGTTTGGGGTTATAATCAGCTATTATTACCGGAGCTAAGTATGTATAAAATTCATTAACAAGTTTTTGATTAATAAAACTATTTAGGGTTTTATTACCACCTTCAACAAGAAGACTAGTTATTCCAATCTTACCCATCTTCTCAAGTAAGGTATCTAAACAAACCTGATGTTGACTTTGTGGTAATAGCCAATATTCAATGCCAAGTTGGTTAAGCTTGGTTGCTACTTGTGCAGAGATCTTTGAACAAACAAAAATCGTTTTGGCATGCCTTTGATCTAAAACTCGCCAATTATGATTTATTGTTGTCAGATGATTAGCAAGTATAAATCTAGTTGGATGTTTTATTTTATTGATATTTATTCTTACATCAAGACTTGGGTTGTCATCAATTAGAGTTTGCTTGCCAATTAAGATAGCGTCACAAATATTGCGCAATTCATGAGTATTTACGAATGCTTGATGTGAGCTTATTTTTTTTGAGTCACCATCATTAACGGCTATTTTACCATCTAATGACATAGCCCATTTTGCATAAACAAAAGGTTTTTTGGTTGTTTGATAATGAAAAAATATTTTATTTAACTCTTGTGCTTGTTTCTCTAGTAAGCCTACTTCGACTGTTATACCAGCATTTTTGAGTCTTTCGACGCCTTTGCCAGCAACTTTTGGGTTTGGATCAAGAGTAGCAATAATTACTTTTTTTATCCCAGCTTTGATTATAGTATCAGTACAGGGAGGAGTTCTTCCATGGTGACAGCATGGTTCTAGTGTTACGTATGCTGTAGCTCCTTTTGCTTTGTCTCCTACTTTTATCAGTGCGTGAACCTCTGCATGTGCTTCTCCTACAGCTTCATGCCAACCTTCCGAGATAATTGCACCATTTTTCACTATTATGCAACCAACCATTGGATTAGGTGATACTGTAAGTCTACCTCTATTTGCTAGAGTAAGTGCTTGTTGCATATAATATTTATCGATATTTTTCATTTGCCCATTTATATTTACTTACAGTTAGGGCAGGACGAAGGAAGTATTATTGCTATAAAAATACAATAGGCTATAAAACTATATTTATAGCCACAGTAATAATAGCGTGATGATGTTTTCCTCAATCTTCTTTCATCCAGACTGTAACTGTCGGCTTTGGAATTACACCAAATCTGCTTGACCTTTCTATTTTTATTAGAAAGCGCTCGCGGGCTTCTGCTATAAGCAGTTACCGCCGGTAGGGAATTTCGCCCTGCCCTGAAGATTATTTAACTAGTATAGCAATATCAATTCTAAAAATAAATTATATTAGCAGTATAAAGATTTTATTTAACTGATTATAATTAGCACTCAAACTAAAATGTTTAAATATTTTATAAGAAGGTTATTTTGTCAGAATATTCTTTATTTGTAATGCTCTGTGTTATCGCAGCTATTTCAAGCTATTTTAACTTGAGATTTCTCAAGTTGCCAAAAGCTATAGGTTTAACAGTAGTTAGTGCTTTAATATCACTAATGCTTGTGGTACTAATAAAGCTAGAACCCAAGTTATTTTATCCAGCGTATCATATGCTAAATAGTATCGACTTTAAGATATTGGTACTAAAGGTATTGCTGGGATACTTACTTTTTGCAGCAGCAATGCATCTAAATTTTTTAGAAATAAAAAATTTTTTAGCAAGCATTTTTGTTCTTTCAAGTCTAGGAGTTGTTGTCTCAACCTTTATAATTGGAACATTATGTTGGTTGGCTGCTCCAATAGTTATTAAACATGATGTTAGTTATATATATTGTCTTATAGTTGGAGCAATATTTTCACCAACTGATCCTGTTACAGTATTTGCTGTTTTTAAAACTAGCAAAAGTGTTCCGATGAGAGTTAAGTCGATATTATCTGGCGAGGCAATGTTTAATGACGTCTTTTCAATAGTTATATTTTTAATTTTGCTATCGCTAGTGATTAGTGGAAAGAGTGATATTAGTTTTAGTAGTTTTGTATTAATGCTGTTTCGAGAGGGGTTCGGTGGTATAGTGTTGGGCTTACTACTTGGTTGGATCGGTGTTCGCTTGATGAATAAATCAGATGATGGTAATACTCTCATTATAATATCCCTAGCTTTGGTAAGCTTTGGCTCTTGGCTTGCAACAAAAATCGATGTATCTGAGCCACTTACTATGGTTATTACAGGAATAGTTATTGGTAATTCAAGAACACAACAAGGTGTGTCAATAGAGTCAAAACGAACTTTAACAAATTTTTGGATAATCATTGATGAATTATTAAACGCATTTTTGTTTGTTTTGGTAGGTATTGAAGTTTTAGAAATGAATTTCTCAGGGAAATATATTATTGCTGGAATAATTATTTTCTTAATATCATTAATTGCGCGATACATTAGTGTTACTATTTCAATGCTACTAACTGAGATGTCAATAAAGAAAAACTTTTGTAAGAACAATTTGGTTATAACTTGGGCTGGTTTGAGAGGTGGTGTCTCAATTGCATTAGCTCTATCAATTCCTGTGGAGCATAGAATTCTACATATTTTTTCGATAATTTATATAGCGGTACTACTTTCAATATTTATACAAGGAATTTCTTTTAGAAAAGTGTTAGAAAAGGCATATGTTGAGGAATAG

Protein sequences of DBSCAN-SWA_1

>NZ_CP009682|86264:95719|94468_95719_+|WP_071660020.1|DBSCAN-SWA
MSEYSLFVMLCVIAAISSYFNLRFLKLPKAIGLTVVSALISLMLVVLIKLEPKLFYPAYHMLNSIDFKILVLKVLLGYLLFAAAMHLNFLEIKNFLASIFVLSSLGVVVSTFIIGTLCWLAAPIVIKHDVSYIYCLIVGAIFSPTDPVTVFAVFKTSKSVPMRVKSILSGEAMFNDVFSIVIFLILLSLVISGKSDISFSSFVLMLFREGFGGIVLGLLLGWIGVRLMNKSDDGNTLIIISLALVSFGSWLATKIDVSEPLTMVITGIVIGNSRTQQGVSIESKRTLTNFWIIIDELLNAFLFVLVGIEVLEMNFSGKYIIAGIIIFLISLIARYISVTISMLLTEMSIKKNFCKNNLVITWAGLRGGVSIALALSIPVEHRILHIFSIIYIAVLLSIFIQGISFRKVLEKAYVEE
>NZ_CP009682|86264:95719|86264_88049_+|WP_003032762.1|DBSCAN-SWA
MKNIRNFSIIAHIDHGKSTLSDRFIQVCNGLSEREMKEQVLDSMDIERERGITIKAQSVTLDYTARDGQTYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQTVANCYTAIEQNLEVIPILNKIDLPSAEPDRVAQEIEEIIGIDATGATTCSAKTGIGVEDVLETIVAKVPAPEGDVNAKLQALIIDSWFDNYLGVVSLVRVKNGTIKKGEKFKVMSTGVAYQVDRLGVFTPKMKDLDHLKAGEVGFIVAGIKDIHGAPVGDTLTHAHNPTDKPVPGFKKVQPQVYAGMFTISSDDYPDFREALEKLSLNDASLFFEPEVSQALGFGFRCGFLGMLHMEIIQERLEREYNLDLITSAPTVVYKAIKKDGEIIEVDNPSKLPEPGAIAEIQEPIVRANILVPKDYVGSVITICIEKRGVQVDLNYVGNQVSITYDLPMIEVVSDFFDTLKSVTKGYGSLDYELIRYEPANMVRLDVLINGDKVDALASIVHKDQAKYKGRELVERLKELIPRQMFEVAIQAAIGGTIVARSTVKALRKNVLAKCYGGDVSRKKKLLEKQKEGKKRMKNIGSVEIPQEAFLSVLKK
>NZ_CP009682|86264:95719|91208_92420_-|WP_071660018.1|DBSCAN-SWA
MFEQIKNNVENAIEALKQGKPVVVLDDYDRENEGDLILPGQKATEENIAFMLEHTSGIICLAMDSKKARELNLTPMVAADQNNSTFTTPFTVTIEAKEGVTTGVSAKDRAHTIQVASKADAKAEELARPGHIFPLIANDKGVLGRNGHTEATVDLMKLSGFNSAGVLCELMNKDGTMMKAVELETFAKKHDLPLLTIAELYQYRLATEIFVTKMASSTIPFKKIGELEMSVYKDNFSGDEVVVLSKPYSGNNPLVRMHSSCITGDIFGSLRCDCQDQLHKGIEMISEEGGFFIYLDQEGRGIGLTNKLKAYNLQMNENMDTLEANLALGLPADARKYDLAIQVLKYNNVNRCRLISNNPEKLAALRNVDIETEPVYCEAFVNSHNRNYLITKKIKAKHTIKGI
>NZ_CP009682|86264:95719|89159_90140_-|WP_071660016.1|DBSCAN-SWA
MRNIFKKTLLILLLSVIIASCGMLSNDQFVYLGHGENSPDYQLYYDKTQKLFVLIDKRNGCFQKDDTGTCLAFTLKQAREFREYVLAKMIEIDVRLAKDDYGNYAIEELQKAGVTTVNKPIKTKKVFATPVRQIVLDRKQQYHLVRKEYEIDSNLVAMVVNDKEGKKRIKVAYTVDFPGLEKEYSTELRPFIIDPEYLYTHMTIDTVHEAQFMQRDVMKSQTNVKKKVDDYLKDVVDKDKKDTGYTHQEVASSVAALDNDLITKADEQREDKETTLASGSSISTIAKKPINQESSGSTIQTATKTASTTQVDSNDTPKTTLASDNK
>NZ_CP009682|86264:95719|92412_93018_-|WP_003022624.1|DBSCAN-SWA
MFSGIVQQLGTIKKITTKDSLKTFCIKFDNSLQCSIGDSVAINGTCLTVTKLDKQNLTANFDAVPETLKKTNLDTLKENQLVNIELAMRYGDHIGGHMVQGHIDEPGQIKSIQNVGGAWLIEISASREFLKYLVKKGFVTIDGMSITVINVLKDSFTVTLIPHTIEVTIAKNYSNGSMVNLEADATGKYIYKYIQGFKENV
>NZ_CP009682|86264:95719|90755_91199_-|WP_071660017.1|DBSCAN-SWA
MRKLAIVVSEFNSLITDKMLEGALEEAYAQGLKDSQICIKKVPGAVELPYAAKLIAETKEFDAIVLLGCVIRGETDHYDYVCDQVSYGTQKVMHQYNLPVIFGILTTHNKEQALERVGGKKGHKGKYSVQAAITMAKMKKDILKQGV
>NZ_CP009682|86264:95719|90234_90759_-|WP_003040992.1|DBSCAN-SWA
MNMSLEILKYPHPVLKEVAKEVTKDEINDDLRATIAEMHELMLEANGVGLAAIQVGIKKRFFIMYDNLEEQNPKIITIINPEIIEQSGKIIDEEGCLSFPGVSAKVNRATTVKIKALNEFGDEIEIEKDGFLARCIQHEIDHLNGITFFDHLGSLKRKMIEKKYKKLMQENAKS
>NZ_CP009682|86264:95719|87996_89142_+|WP_080543197.1|tRNA|DBSCAN-SWA
MVLLKFLKKLFYQCLKNKIRVIMENKKVIVGISGGVDSSVSALLLKQQGYDVTGVFMKNWEEDDTDEFCSAEQDIADAQAVCDSIGIPFKKINFAAEYWDNVFEHFLIEYKAGRTPNPDILCNKEIKFKAFLSYVHLLGGDYIATGHYARTRVLEDGSVQLVKGLDDNKDQTYFLYTLGQEQLRQTIFPIGNIEKSKVREIAKENNLVTFDKKDSTGICFIGERKFKEFLSKYLPAQKGEIHDENGIKIGMHDGLMYYTIGQRQGLGIGGVKDRPEVPWFAAKKDLENNVLIAVQGHDHPLLFKQSLQAIELSWVAGMAPADKFRCAAKVRYRQKDQSCEVEVNQDGSVNVTFDQPQRAITPGQSVVFYIDDVCLGGGVII
>NZ_CP009682|86264:95719|93010_94078_-|WP_071660019.1|DBSCAN-SWA
MKNIDKYYMQQALTLANRGRLTVSPNPMVGCIIVKNGAIISEGWHEAVGEAHAEVHALIKVGDKAKGATAYVTLEPCCHHGRTPPCTDTIIKAGIKKVIIATLDPNPKVAGKGVERLKNAGITVEVGLLEKQAQELNKIFFHYQTTKKPFVYAKWAMSLDGKIAVNDGDSKKISSHQAFVNTHELRNICDAILIGKQTLIDDNPSLDVRININKIKHPTRFILANHLTTINHNWRVLDQRHAKTIFVCSKISAQVATKLNQLGIEYWLLPQSQHQVCLDTLLEKMGKIGITSLLVEGGNKTLNSFINQKLVNEFYTYLAPVIIADYNPKQQLSFNQISVREDIIINSCFKENSNV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003032762.1|86264_88049_+	elongation factor 4	A0A2K9L6L3	Tupanvirus	4.2e-23	42.6
WP_080543197.1|87996_89142_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_071660016.1|89159_90140_-	hypothetical protein	NA	NA	NA	NA
WP_003040992.1|90234_90759_-	peptide deformylase	A0A067XQZ3	Caulobacter_phage	7.2e-16	37.5
WP_071660017.1|90755_91199_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.9e-26	45.7
WP_071660018.1|91208_92420_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.6e-87	44.6
WP_003022624.1|92412_93018_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.7e-27	35.1
WP_071660019.1|93010_94078_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.1e-50	35.4
WP_071660020.1|94468_95719_+	cation:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	2.1e-29	34.3

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NZ_CP009682|380331:389931|DBSCAN-SWA
AATGATTTTAATCGATGGTAAGTCTCTCTCAAAAGACCTCAAAGAGAGATTAGCAACTCAAGTTCAAGAATATAAGCATAATACGGCAATCACACCAAAACTTGTCGCAATAATTGTTGGTAATGATCCGGCAAGTAAGACATATGTTGCCTCAAAAGAAAAAGCCTGTGCCCAAGTTGGTATAGACTCACAAGTGATTACACTACCAGAGCATACTACAGAATCAGAACTTTTGGAGCTGATCGATCAGCTAAATAATGACTCTAGTGTTCATGCGATTTTAGTGCAGCTACCATTACCAGCACATATCAACAAAAACAATGTGATATATAGTATAAAACCAGAAAAAGATGTCGATGGTTTTCATCCTACAAATGTTGGTAGACTACAACTTAGAGATAAAAAATGCTTAGAATCTTGTACACCTAAAGGTATCATGACTATGCTAAGAGAGTATGGCATAAAAACAGAGGGAGCCTATGCAGTGGTTGTCGGCGCAAGTAATGTTGTTGGTAAACCAGTATCACAATTGCTGCTAAATGCTAAAGCTACGGTGACGACTTGTCATAGATTCACAACTGATCTTAAATCACATACTACAAAAGCAGATATCCTAATTGTTGCTGTTGGTAAGCCTAATTTTATCACGGCTGATATGGTCAAAGAGGGTGCTGTAGTTATCGATGTTGGTATTAATCATGTTGATGGTAAGATAGTTGGTGATGTTGATTTTGCTGCTGTCAAAGATAAGGTCGCAGCAATTACCCCAGTACCTGGAGGGGTTGGGCCAATGACAATTACTGAACTGTTATATAATACTTTTCAGTGTGCTCAGGAGTTGAATAGGTAGTTTATAGATTTGATTTTATCATGGGTAGTCATACCTGCGTAGGCGGGTATCTCTATACTAATGGGTCAAATCGAAAGGATTCCCGCCTGCGCGGGAATGACAAGTGTTTTTAGAAACTTATTAATGCTAGAAGTTTAAAAAGCTTAATAGAAAACTGAACAAATGAAAAAAGGTTATGTGTACATACTAACTAACAAAAATAACAGTGTTTTATATGTTGGGGTTACATCTGATATTGTAAAAAGGATCTATGAGCATAAGAATAAGTTTGTAGATGGTTTTAGTCGTAGATATAACCTTGAGAAGTTAGTTTATTTTGAGTTATATCAAAATATTGAAGATGCTATAATTAGAGAAAAACAGCTGAAAAAGTGGAATATAGCTTGGAAAAATAGAATTATAAAGGGTATGAATCCTAAGTGGGATGATTTATATAATGAAATTTCAAGCTAAAATAAAATATTGTCATACCCGCGTAGGCGGGTATCTTTATACTAATGGGTTAAATTGAAAGGATTCCCGCCTGTGCGGGAATGACAAGTGTTTTTAGAAACTTGTTAATGCTAGAGGTTTTAGAAGTATAGGATCTCTTGACAGGAATAATTAAGTAATAAGATTCTGGATCAAGTCCGGAATGACAAATATTTTTAATTGATTAAAAGGAAATAAAATGGCAGGCTTAAAATATGAAGATGCTGGCGTAAATATCGAAGCTGGTAATCAAGCTGTAGAAAGAATGAAGCAGCATGTCAAAAAAACTTTTACCCAAGATGTTTTGACAGGTTTGGGTAGCTTTGGTTCTTTATACTCACTAAAGAATATTATAAATAATTATGATGATCCTGTCTTGGTACAGTCGATTGATGGTGTTGGCACAAAGACAAAAGTCGCGGTAATGTGTGGTAAGTTTGAAAACCTTGGTTATGATCTTTTCTCAGCTGCGACAAATGATATCGTTGTAATGGGTGCCAAGCCAATTACGTTTCTAGATTATGTTGCGCATGATAAGCTTGATCCTGCGATTATGGAAGAGCTCGTCAAAGGGATGTCAAAAGCTTGTGCTGAGTGTGGGGTTTCGCTGGTAGGTGGCGAGACTGCGGAAATGCCTGGAGTATATCAAGCTGGTGAGATTGACATGGTTGGAGTTATCACAGGTATCGTTGATAGAAAAAGAATTATCAATGGTGAGGATATCAAAGAGGGTGATATTGTCTTTGGGCTTAGTTCATCAGGATTACATACAAATGGCTACTCTTTTGCACGTAAACTATTTTTTGATGTAGCGGGCAACAAACATACCGATACTTATCCAGAGTTAGAGGGTAAAACTATCGGTGATGTGCTACTAGAGCCACATATCAACTATACTAATATCATCCATGATTTCTTAGATAATGGTGTTGATATCAAAGGTATGGCACATATCACAGGTGGCGGGTTTATCGAGAATATTCCACGCGTATTACCACAAGGTTTAGGTGCCCAAATTGACAAAGATAGTTTTGCAACTCCAGCTATTTTCAAGCTAATGCAGAGAATCGGCGATATAAGCGAATTTGAAATGTATCGCTCATTTAATATGGGTATTGGTATGACGATAATTGCTAGCCAAGATCAATTTGACAAGATGCAAGAATTAGCTAAAAAACATACTAATACAAAACTATATCAAATTGGTAAAATCACAAATTCAGGAAAGGTAGAAATTATCTAATGCTTGATAAACAAATCATTGCTAATAATATAAAAAATGTTCTAAAATCAACAAATCTTGATATCAAGAATAAATATATAGGTAAAGTAAGAGATATGTACTTTACTGATGACAAAAGTATTTTGATATCTACAGATAGACAATCTGCTTTTGATAGATCTTTGGGCTTTATACCATTTAAGGGGCAAATCCTTGCACAATCATCAGTATGGTGGTTCAAAGAAACAGCACATATTGTCAAAAACCACTTTATAGACTCTCCAGATCCAAATGTTGTCATCGCGAGAAAGGCAAAAGTATTGCCAATTGAGTTTGTCGTCAGAGGTTATATAACTGGTTCAACTTCTACATCATTGTGGACACATTATAAAAACGGTAGCCGTGACTATTGTGGCAATATCCTGCCAGAAGGTTTAAAAAAGAATCAAAAATTACCACAAAATATCCTTACACCAACTACCAAAGAGCAGGATCATGATCGCCCAATTTCAGCTGAGGATATTGTCAAGGAAGGTTGGCTAACTCAGCAGCAGTGGGACTTTGCTTCACAAAAGGCTCTAGAACTTTTTGAGTTTGGACAAAAAAAAGCCTTAGAACATGGCTTAATCTTGGCGGATACTAAATATGAGTTTGGTATTGATGAGCAAACTGGAGAGATTATTTTGATCGATGAGATCCATACTCCAGATAGCTCAAGATTTTGGCTAAAAGATAGCTATGCCACAAGATTTGAAAATGGTGAAGAGCCAGAGAATATTGATAAAGAATTTTTTAGATTATGGTTTGCAAAAAATTGTGACCCATATAATGATGAAGTTTTACCACAAGCACCACAAGAGTTAGTTGTCGAATTATCTCAAAAATATATAACCCTTTTTGAAATGATAACGGGGCAAAAGTTTGAAGTACCAAGAGATTTAGAAAATATAAATCAACGTATTGTTAAAAATGTTACAGATTACTTAAATATGGAGAAGCCAGTGAATATTCTTCTAGTAGGATCAGGAAGTAGAGAGCATGCAATAGCAGAAGCAGTCAAAAGAAGCTCTATTGCAAATAAGCTTTTTTGTATAAGCACAGCGATTAACCCTGGGATAGATAAGATAACACAAGGGTATCAAATCGCTGATATTTGTAATTGTGATGAAGTACTAGAGTATGCAAAATCACAAAGTATTGATATTGCGATTATCGGTCCTGAAGCACCACTTGAGGCTGGTCTAGCTGATACACTTAAGACAGCAGCAATTGGCGTAGTTGGTCCAACCAAAAAGTTAGCACAGCTTGAAACATCAAAAGGTTTCACTAGAGATCTGATCCGTGATTATGATATAGGCGCTAATCCTTTCTTTAGAAAGTTTAACTCGATGGATGGAGTCGAAGAGACTCTCAAAAAATATCAAAATCAATTTGTCATAAAAGCTGATGGTTTATGTGGTGGTAAAGGAGTGCTTGTTTGGGGAGATCATTTGCACAGCCTTGATGAGGCGATTAGACACTGTCAGTCATTGGTAGATGCTGGCAAAGAGTTTGTTATCGAGGAGAAGCTTGTTGGCCAGGAGTTCTCGCTGATATCATTTACTGATGGCAAAAATTTTATCCATATGCCAGCAGTCCAAGATCATAAGCGTGCCCATGAAGGTGACAAAGGTCCTAATACCGGTGGTATGGGTACTTATTCTGATGCTAATCATAGTTTACCGTTTTTATCAGCTGCTGATATCGAAAGAGCAAAACAAATAAATGAGAAAGTTGTCAAAGCTTTAGCTGATAAATTTGGTGAACCATATCAAGGTATCCTTTATGGTGGCTTTATGGCGACAAAAGATGATACTAAAGTGATCGAGTATAATGCACGTTTTGGTGATCCAGAAGCGATGAATCTACTTACACTGTTAGAGACAGATTTTGTTGAGATTGCTCAAGCTATTACACAGGGTAAACTTGATACGGTCAAAGCTAAGTTTAAAAATCAAGCAAGCGTATGTAAATATCTAGTACCGCTTGGCTATCCAAACCAATCAGTTAAAAACTTTGAGATAGATATTTCACAATGCCCTGATAATGTCGAGCTTTTCTTAGGTGCTGTTGATTATAAAGATGGTAAGCTAATTGGTACAGGCTCTAGAGCTATAGCTGTACTTGGTTTAGGTGATACAATAGCTGAAGCAGAGCAAAAAGCCGAAAATGCTGTCAAAAATATTTATGGTAAACTATTTCATCGTCCAGATATTGGTACTAAAGAGCTTATCAATAAGCGTATCAAACACATGAATTTGTTGCGTGGTAATAAATATCAGGAGCTTAAATAAATAATGTCTAAGCTAAATCTTGTTATATTAGGCTCTACGCGTGGGACTAATATGCAAGCTATAATAGATGCAATAGCAAATAAGCAGCTAAATGCTCAGATAAGCCTAGTAATTTCAAATAAGTCAGATGCTTATATATTACAAAGAGCAGCAGATTATAATATCCCAACTAAATATATAGCAGCTAAAGGTTTGACTAGAGAGCAGTATGATGAGTTAGTTGTTGCTGAAATCCAAAAATATAATCCAGATTTGATTTTGCTGATAGGCTTTATGCGTATTTTAAGCTCGGTGTTTATCAAAGCTTTTGAAGGTAAGATCTTAAATATTCATCCATCACTATTACCAAAGCACCGAGGATTAATGGATTTGGCAGTGCATCAGTCAGTTATCGACGCTGGAGATAGTATATCTGGATGCACTATCCATCAAGTAAGTGAAGAAGTTGATGGTGGTGATATAGTTTTGCAGTTAAAATGTGATGTGGTGAAAGAAGATACGGCTGATAGCTTAAAAGAAAAAGTACAAGCCTTAGAGAGTAAAGCTTGGATAGAAGTTATTAAAAATTGGGATAAGTAATTTTTAATAAATGCCATTCTACGATTTGAGCGTAGAATCTATTGATAGATATGGTGAATGGATCCTATAGTTTAAGTATAGGATGACCGATTTGTGGGTTAAAGTGGAGAAAAGAGATGAGTGTACAAGTTGGTGTAATAATGGGCTCTAAATCTGATTGGAGTACAATGAAAGAATGTTGTGATATCTTGGATAATTTAGGTATTGGTTATGAGTGTGAAGTAGTATCTGCTCATCGAACTCCAGATAAGATGTTTGACTATGCCGAAACAGCTAAATCTAGAGGACTTAAGGTTATAATAGCAGGAGCTGGCGGTGCTGCACATTTACCTGGAATGGTTGCGGCAAAAACTACTTTACCAGTATTAGGTGTACCAGTTAAATCAAGTACACTTAATGGCCAAGATAGTTTATTATCAATAGTACAGATGCCAGCGGGTATTCCAGTAGCTACTTTTGCAATTGGTATGGCAGGAGCAAAAAACGCGGCGCTTTTTGCTGCAAGTATCTTGCAACATACAGATACAAATATTGCAAAAGCACTAGCTGAGTTTAGAGCTGAGCAAACACGATTTGTTTTGGAAAATCCTGATCCTAGGGAGCACTAAATAATGAAAATAGGTATTATCGGAGCTGGACAACTTGCCAGGATGCTAAGCTTAGCAGGTACACCTTTAGGTTTAGAGTTTCATTGTCTTGGTAAAAATGGTGATTGTGCTGAAGAAGTTGTAAAAACTGTTACAGATATTAAGCTAACAAAGGTAAATGATGTTGTAGCTTGGGCAAAGCAGTTTGATGTGATAACTTTTGAAAATGAAAATATCTCTCATGAGCTTATCAAAGCTATAAATCATGAGGTGAGTGTGTATCCATCAGCTAAAGCTATAGCTATTTCTCAAGATCGTTTACTTGAGAAATCCTTTATGCAAGATCATGGTATTGCTACTGCAAAATTTGTAAATATCGATAGTTTGGCAAAATTGCAAAGTGCTGTTGATGATCATGGTTTGCCAGCTATACTAAAAACTCGTCGATTTGGCTATGATGGTAAGGGTCAGTTTGTGATTAGATCACAAGAGGATATTACTAAAGCATGGGATGCGCTCAAGGATGCTCCGGATGGACTTATTTATGAGGCTTTTGTTGATTTTGATTATGAAGTTTCACAAATATGTACAGCTGATCTAAAGGGTAATATCGCCTTTTATCCATTGGCTAAAAATACTCATAAACAGGGTATTATCGTTGAATCAGAAGCACCTTTCGAAAATATTGTACTTGCTGAAAAAGCACAACAAATCGCTAAAATTCTAGTCAAGGAGTTTGCATATGTTGGTACTTTGGCAATTGAGTTTTTTGTCAAGGGCGATGAGCTAATAGTCAATGAAATAGCGCCACGTGTGCATAATAGCGGTCATTGGAGTATTGATGGCGCTGTCACATCACAATTTGAGAATCATGTGCGTGCTATTGCCGGATTGATTTTAGGTGATACAACTAGTCGTAAGACAGTTATGCTAAATTGTATCGGTGGTATGCCGGCAACAAAAGATTTAGCAGCTCTAGATAGAGTTAAAATTCATAGTTATAACAAGGAGCCTCGTAAGGGACGTAAAGTAGGTCATTTAAACCTTAATTTAAATGATGAAACTGATGAGTATCAGCTACTTCAGGCTAAAAAATTAATTGCTCTTTCTGAAGAGATTTAGATTACTCCAAAAGCATTCTTTATCCAGTTAATATTACTTTCATTGATCGCAATTAAATCAAAACGACACTGATAATCTTGATATTGAGGATTGTGTTGTAAGTATATACTTGCACTGTTTACAAGTTTTTGTTGCTTGCTATAGGTCAGCATTTCCTCAGCTTGAGCAAATTTGGTTTTACTGCGATATTTTACTTCAATAAAGACTAGAGTATCTTTATCTAAAGCAATGATATCTATTTCACCATATGGTAAAGCTTTGAAGTTATGAGCTAGAATTTCTAATGCTTGAGTGTGTAAAAACTTACACGCTTGTAGTTCGGCTTTGTTACCTATTTCTATTGTTTGCATTTTCTTTATTGTGCTGTCCTGTCAGTTTTTGGTTGCCACCGCTTCAATAATTTGAAGAGTAGTTTCTTAAATATAAATCTTTAGTTAATGCCACTATGTCTAAGTAGCGCATCTTCGTTTGGTTTGCGTCCCATAAATGCGACAAAGTTATCCATAGCATCACGTGATGACCCTTTAGAAATAATATTTTCTAACAACTCATTACCAACTTTATTACTAAGTATCCCTTCTTGCTCAAAGCGTGAGAATACATCTGAAGATAAGATTTCTGCCCATTTATAGCTATAGTAACCCGCAGCATAGCCACCAGCAAAAATATGTGAAAAGCCATTTTGGAATTTATTATAACTTGGCGTTTTAATTAAATTAATTTTTTCTCTAATACTGTCTAGCTCTTTTTGTACTTCTGTTGCAGATGTTAGTTTTTTATAGTGGATATTCATATCAAATATTCCAAACTCAAGTTGTCTAACCATCATTAGAGCTGAATGAAAGTGTCTAGTACCTACAAGCTTATCTATCTGTTTGCTACTGAGAACCTTACCATCTCGTGATCCAGCTATAACTGCTAGACCTTCCTGACACCAACAGAAATTCTCCATAAATTGACTCGGCAACTCAATAGCATCCCACTCAACTCCATTTGTACCGGAGATAGAAGGAATAGTTACTTGTGATAATATATGGTGCAATGCGTGACCAAACTCATGAAATAGTGTCACAACATCATTATGGGTTAGATTTGCACCATCTTTTGAGGGTGGTAGGAAATTGCAGTTTACATAAGCTACTGGATTTTGTTTTGAGCCACTAGAGGTGGTAAAAGCAGTACGTGAACCATCCATCCATGCACCACCACGTTTGTTATCACGAGCAAAAAAATCACAGATTATACTACCGACATATTGATCATTTTTGAAAAAGTCAAATGTCTGCTGTTCAGGTACGTATTTTGTATATTGAGTATTTTCTTTTACATCTAAATTATAGATTTGCTTGAGTATCTTAAATAATCCATCTTGTACTTTTTCTAATGGGAAGTATTCTCTAAGTTCTTCTTCTGTGAAGTCAAATTTAGCTTTTTTGAGTTTCTCAGAGTAGTATGCGCTATCCCATGGTTGTAGCGCATCGACAAGGCCAGCATCCTCTGCAAATCTACGTAATTCATTAAGTTCTTTTTTAGCTTGTGGTAAAGATTTTTCTAGGAGTTTATTTAATAGCTCTAAGACTTGTTCTGGTGTTTCAGCCATTTTTGTAAAGAGAGAATTTTCAGCATAATTATCAAAGCCAAGTATTTGAGATTTTTCAATACGCAATTTTAGAATTTTTTCGATATTTTCATCATTATCAAAATTTTTATTATCAGCTTCTTTTGACGCTTTTGTGCAATATGCTTTGTAGAATTTTTCACGAAGTTTTCGATTGTCTGCTTGCTGCATTACTGCCAAGTACGTTGGGATGTCTATACCTAGAGCATATTTTTCAGTGATATTCTTTTGTTTGGCTTTAGCTTTTGCTGATTCTATAGTATGTTGTGATAAACCTTTGAGTTCTTTCTCATCATCGGTAGTATATAGCCAATCCATAGTTGCATCTAGAACATTATTTTCAAATTTAGTGCTTAGTTGAGCAAGTTCTTGAGAGATTTGTTGTAGTCTCTTTCTCTTAGCTTCATCAAGATTTACCCCTGATTGCTCAAAGCCAATAATAGCTTTACGTACTGCTTGAGCTTGTTCATTAGTTAAATCATCTTTTTGAATTTGTTTGTAGAGGTCATATAAATCTTTATTTTGTCCTAATTTGGTATAGTAGTCAGTAAGTTTAGCTATCGCATATTCATAACTTTCGCGCAGTTCTTTAGAATTACAAACAGCATTCATATGTGAGATTGTTGAAAAAGCTTGACTTATTTTCTCGTCATCTTCCTCTAGTTTTAGTAACGTCTGCCAATTGGGATTTTCAGTTTGTAGAGCATTTTCAAGGTTGCTTTGAGCTAGGCTAAAGAGTTTATCTATAGCAGGCTTTACTTCGTCTACTTTAAATTCTGCAAGTTTAGGTAATTTAGAGTCTTCAATTATCGAATTCAT

Protein sequences of DBSCAN-SWA_2

>NZ_CP009682|380331:389931|381850_382894_+|WP_003041695.1|DBSCAN-SWA
MAGLKYEDAGVNIEAGNQAVERMKQHVKKTFTQDVLTGLGSFGSLYSLKNIINNYDDPVLVQSIDGVGTKTKVAVMCGKFENLGYDLFSAATNDIVVMGAKPITFLDYVAHDKLDPAIMEELVKGMSKACAECGVSLVGGETAEMPGVYQAGEIDMVGVITGIVDRKRIINGEDIKEGDIVFGLSSSGLHTNGYSFARKLFFDVAGNKHTDTYPELEGKTIGDVLLEPHINYTNIIHDFLDNGVDIKGMAHITGGGFIENIPRVLPQGLGAQIDKDSFATPAIFKLMQRIGDISEFEMYRSFNMGIGMTIIASQDQFDKMQELAKKHTNTKLYQIGKITNSGKVEII
>NZ_CP009682|380331:389931|381342_381633_+|WP_071660105.1|DBSCAN-SWA
MKKGYVYILTNKNNSVLYVGVTSDIVKRIYEHKNKFVDGFSRRYNLEKLVYFELYQNIEDAIIREKQLKKWNIAWKNRIIKGMNPKWDDLYNEISS
>NZ_CP009682|380331:389931|380331_381180_+|WP_003038445.1|DBSCAN-SWA
MILIDGKSLSKDLKERLATQVQEYKHNTAITPKLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPEKDVDGFHPTNVGRLQLRDKKCLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTKADILIVAVGKPNFITADMVKEGAVVIDVGINHVDGKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQELNR
>NZ_CP009682|380331:389931|385901_386393_+|WP_003041702.1|DBSCAN-SWA
MSVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKSRGLKVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGMAGAKNAALFAASILQHTDTNIAKALAEFRAEQTRFVLENPDPREH
>NZ_CP009682|380331:389931|387490_387844_-|WP_003026519.1|DBSCAN-SWA
MQTIEIGNKAELQACKFLHTQALEILAHNFKALPYGEIDIIALDKDTLVFIEVKYRSKTKFAQAEEMLTYSKQQKLVNSASIYLQHNPQYQDYQCRFDLIAINESNINWIKNAFGVI
>NZ_CP009682|380331:389931|387924_389931_-|WP_003041704.1|DBSCAN-SWA
MNSIIEDSKLPKLAEFKVDEVKPAIDKLFSLAQSNLENALQTENPNWQTLLKLEEDDEKISQAFSTISHMNAVCNSKELRESYEYAIAKLTDYYTKLGQNKDLYDLYKQIQKDDLTNEQAQAVRKAIIGFEQSGVNLDEAKRKRLQQISQELAQLSTKFENNVLDATMDWLYTTDDEKELKGLSQHTIESAKAKAKQKNITEKYALGIDIPTYLAVMQQADNRKLREKFYKAYCTKASKEADNKNFDNDENIEKILKLRIEKSQILGFDNYAENSLFTKMAETPEQVLELLNKLLEKSLPQAKKELNELRRFAEDAGLVDALQPWDSAYYSEKLKKAKFDFTEEELREYFPLEKVQDGLFKILKQIYNLDVKENTQYTKYVPEQQTFDFFKNDQYVGSIICDFFARDNKRGGAWMDGSRTAFTTSSGSKQNPVAYVNCNFLPPSKDGANLTHNDVVTLFHEFGHALHHILSQVTIPSISGTNGVEWDAIELPSQFMENFCWCQEGLAVIAGSRDGKVLSSKQIDKLVGTRHFHSALMMVRQLEFGIFDMNIHYKKLTSATEVQKELDSIREKINLIKTPSYNKFQNGFSHIFAGGYAAGYYSYKWAEILSSDVFSRFEQEGILSNKVGNELLENIISKGSSRDAMDNFVAFMGRKPNEDALLRHSGIN
>NZ_CP009682|380331:389931|385209_385785_+|WP_003017844.1|DBSCAN-SWA
MSKLNLVILGSTRGTNMQAIIDAIANKQLNAQISLVISNKSDAYILQRAADYNIPTKYIAAKGLTREQYDELVVAEIQKYNPDLILLIGFMRILSSVFIKAFEGKILNIHPSLLPKHRGLMDLAVHQSVIDAGDSISGCTIHQVSEEVDGGDIVLQLKCDVVKEDTADSLKEKVQALESKAWIEVIKNWDK
>NZ_CP009682|380331:389931|382893_385206_+|WP_071660106.1|DBSCAN-SWA
MLDKQIIANNIKNVLKSTNLDIKNKYIGKVRDMYFTDDKSILISTDRQSAFDRSLGFIPFKGQILAQSSVWWFKETAHIVKNHFIDSPDPNVVIARKAKVLPIEFVVRGYITGSTSTSLWTHYKNGSRDYCGNILPEGLKKNQKLPQNILTPTTKEQDHDRPISAEDIVKEGWLTQQQWDFASQKALELFEFGQKKALEHGLILADTKYEFGIDEQTGEIILIDEIHTPDSSRFWLKDSYATRFENGEEPENIDKEFFRLWFAKNCDPYNDEVLPQAPQELVVELSQKYITLFEMITGQKFEVPRDLENINQRIVKNVTDYLNMEKPVNILLVGSGSREHAIAEAVKRSSIANKLFCISTAINPGIDKITQGYQIADICNCDEVLEYAKSQSIDIAIIGPEAPLEAGLADTLKTAAIGVVGPTKKLAQLETSKGFTRDLIRDYDIGANPFFRKFNSMDGVEETLKKYQNQFVIKADGLCGGKGVLVWGDHLHSLDEAIRHCQSLVDAGKEFVIEEKLVGQEFSLISFTDGKNFIHMPAVQDHKRAHEGDKGPNTGGMGTYSDANHSLPFLSAADIERAKQINEKVVKALADKFGEPYQGILYGGFMATKDDTKVIEYNARFGDPEAMNLLTLLETDFVEIAQAITQGKLDTVKAKFKNQASVCKYLVPLGYPNQSVKNFEIDISQCPDNVELFLGAVDYKDGKLIGTGSRAIAVLGLGDTIAEAEQKAENAVKNIYGKLFHRPDIGTKELINKRIKHMNLLRGNKYQELK
>NZ_CP009682|380331:389931|386396_387494_+|WP_071660107.1|DBSCAN-SWA
MKIGIIGAGQLARMLSLAGTPLGLEFHCLGKNGDCAEEVVKTVTDIKLTKVNDVVAWAKQFDVITFENENISHELIKAINHEVSVYPSAKAIAISQDRLLEKSFMQDHGIATAKFVNIDSLAKLQSAVDDHGLPAILKTRRFGYDGKGQFVIRSQEDITKAWDALKDAPDGLIYEAFVDFDYEVSQICTADLKGNIAFYPLAKNTHKQGIIVESEAPFENIVLAEKAQQIAKILVKEFAYVGTLAIEFFVKGDELIVNEIAPRVHNSGHWSIDGAVTSQFENHVRAIAGLILGDTTSRKTVMLNCIGGMPATKDLAALDRVKIHSYNKEPRKGRKVGHLNLNLNDETDEYQLLQAKKLIALSEEI

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003038445.1|380331_381180_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.4e-29	38.4
WP_071660105.1|381342_381633_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_003041695.1|381850_382894_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	2.0e-54	36.3
WP_071660106.1|382893_385206_+	phosphoribosylamine--glycine ligase	A0A0M4JBD3	Mollivirus	1.2e-25	30.4
WP_003017844.1|385209_385785_+	phosphoribosylglycinamide formyltransferase	Q58MV3	Prochlorococcus_phage	2.2e-18	34.7
WP_003041702.1|385901_386393_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.0e-19	40.1
WP_071660107.1|386396_387494_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_003026519.1|387490_387844_-	YraN family protein	NA	NA	NA	NA
WP_003041704.1|387924_389931_-	M3 family metallopeptidase	A0A1V0SID3	Klosneuvirus	1.1e-51	25.9

2. NZ_CP009683

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	0 : 5456	11	Erwinia_phage(100.0%)	NA	NA
DBSCAN-SWA_2	8937 : 9399	1	Streptococcus_phage(100.0%)	transposase	NA
DBSCAN-SWA_3	12562 : 20497	8	Burkholderia_phage(25.0%)	transposase	NA
DBSCAN-SWA_4	30377 : 33067	5	Mycobacterium_phage(50.0%)	integrase	attL 26114:26131|attR 33503:33520

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP009683|0:5456|DBSCAN-SWA

Protein sequences of DBSCAN-SWA_1

>NZ_CP009683|0:5456|4122_4278_-|WP_155760339.1|DBSCAN-SWA
MNAKQKAKNKYQRFLIEECGQNRLDVVNSNISIKDLKNISKIFKMLAKEKS
>NZ_CP009683|0:5456|592_733_-|WP_155760336.1|DBSCAN-SWA
MGRYRENFCFATDKKDEKFAERIINNSLHTLGLGEFRKLQNKIIIK
>NZ_CP009683|0:5456|3154_4075_-|WP_071660636.1|DBSCAN-SWA
MEKLNFKRLSKRAAHYNRARAVYLGATITQNLKGTLYLNYNEASKNEELYNKLTNSQQDECKSFIREYNQERRLIQDFSNESFNAQSFYSDDVTIKILDKLHELGRAKPLNSIIIEAVRKELLSLVEKDNVAKDVCDRYNYDYKQLEAYKKHKNVFTVTFGKRKDIIELFLSLEDDKQNILNNLNDYLAMSFNTDKQLTLEQLYRMIDPQNDYFPKSYMLGAMLDIIDRYGVNPTDELDLDVVFFYWYQIRLLVLHESKAIQQFIKEFDLEESSFDLEAIQKPLVELMTKEVTDKYVGLGNIFQRG
>NZ_CP009683|0:5456|199_583_-|WP_071660631.1|DBSCAN-SWA
MYSKKVNIDPKHIDCQNILDNIHYPYYYELVRHEHFAGFGKTVEELTEQGINAVLLDEHIKFKKPITAGEVEITNKFTRLSKVKFVADQEIKVDGKVVSTNRCEITCIPAQGGRPFFPEYLESFIEY
>NZ_CP009683|0:5456|4316_5456_-|WP_071660637.1|DBSCAN-SWA
MRFEKNLAVIKSLKSVVDLKEYTGFGGLHKSLTKEEHKALEKVLGTALYSEVMASCKTAYYTPIELIKAIYQGIQKLGFTGGRVLEPACGHGAFIFNCPDELRNKSTFYAVELDRISAKLTTVICPYAKVINTKFENTKYKDNSFDLVVGNPPYSNQVIYSDDRELNDLVIHHYFVAKSIRLLKENGVLAFVLPTYCLDNVKNHSRHIMSKYGSLLAAFRLPENMFDSAKVTVDIVFFIKNKEHYTNFLNTTRINVKGHNLPINQYFIDNPSHVIGEFDTCNMYNERIGLTVKNNNSKEIVFKKLNDLVNNLPQIIKPKSESTNLFAKVGLSIEKLSKSNNLLQKRLNDLEIQKLEILKQELLEIEKKRQTILTILDKY
>NZ_CP009683|0:5456|2196_2361_+|WP_155760338.1|DBSCAN-SWA
MNKKYYLYIAIVIVVIIAVKIIHYFSQDIIFTMKVCAVLISLYVVFLYFKISKE
>NZ_CP009683|0:5456|2661_2877_-|WP_071660635.1|DBSCAN-SWA
MTNQRLKFCIGDIYSKQVSIQQEIQKHGFNVVTCQDCGDVILLKKDDETSIICPHCLNEQDPHECSDLFFS
>NZ_CP009683|0:5456|912_1101_-|WP_071660632.1|DBSCAN-SWA
MIITRETTLENHNLDTLKNSNFNNFFYWFKDNYNCKYMTYLLEDLETKSVFLFQQTLYSKKN
>NZ_CP009683|0:5456|1842_2010_+|WP_155760337.1|DBSCAN-SWA
MSGKNKEKTKPIAVKETVYDEIRQFCATEKLYQYEVVAKGFYLLKDKKDKEKKSK
>NZ_CP009683|0:5456|1100_1679_-|WP_071660633.1|DBSCAN-SWA
MMNKRIRQLRDLININRREVEELSDGKIKSRALESIESGRSSVSIEMLQAIHDFYNKHNIVISYEWIITGVGKPPYMLDKSILNTTNINIYKEAKYFEDLNPRSISLTVQDNKLVPFCKIGDLIGGIQVEEKAFSNEYVITKVNNNINTYKIKSYEDRNVHVLMDAKNEIQEIVTFKEIEYFYKIVWVRSYL
>NZ_CP009683|0:5456|2012_2204_+|WP_071660634.1|DBSCAN-SWA
MQEINFIQKLLDPRIIEALADHNVMDIIVNSSGKLIIDSKKTGKQVVGTVDQGEQQFKEKTNE

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071660631.1|199_583_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_155760336.1|592_733_-	hypothetical protein	NA	NA	NA	NA
WP_071660632.1|912_1101_-	hypothetical protein	NA	NA	NA	NA
WP_071660633.1|1100_1679_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_155760337.1|1842_2010_+	hypothetical protein	NA	NA	NA	NA
WP_071660634.1|2012_2204_+	hypothetical protein	NA	NA	NA	NA
WP_155760338.1|2196_2361_+	hypothetical protein	NA	NA	NA	NA
WP_071660635.1|2661_2877_-	hypothetical protein	NA	NA	NA	NA
WP_071660636.1|3154_4075_-	hypothetical protein	NA	NA	NA	NA
WP_155760339.1|4122_4278_-	hypothetical protein	NA	NA	NA	NA
WP_071660637.1|4316_5456_-	N-6 DNA methylase	H2DE57	Erwinia_phage	6.7e-43	31.5

Sequences of DBSCAN-SWA_2

Nucleotide sequences of DBSCAN-SWA_2

>NZ_CP009683|8937:9399|DBSCAN-SWA
GTTAAACATTTTTAATTTTATAGACCCCAAAATCCTCGAAGATCCAATTATTTTTTATAGTCAAATAAATCGTTTTAAGAAACTTTCTAGCAGTCGCAATAATTGCCTTTCCAGCTGATTTCTTTTGCTTTATCTTCTTATAAAAACTTCCCAAATAACTACTATATCTAATAGCTATCAATGTACACTGAACTAACGCAGTCCTCGCAAGCTTATTTCCTCTCTTAGTTATCCTACCTGTTTTCTCTGTCTCATTTGAGTTAGAAACTCTAGGTACTATTCCAAAATAGGAAGCTAATTTATCAGCATTAGCAAAATCATTTACATTGCCAATATGCGATAAAAGTATACTCGCTGATTTATCGCCAATACCTTTTATACTTTTAATACTCTCAAAGCCATCTAAGTTTTGAGGGGTTGTTTGCAGAGCCCTCCATTTTTTCGGTTTTTCAAATTTAACGAT

Protein sequences of DBSCAN-SWA_2

>NZ_CP009683|8937:9399|8937_9399_-|WP_081359278.1|transposase|DBSCAN-SWA
MVKFEKPKKWRALQTTPQNLDGFESIKSIKGIGDKSASILLSHIGNVNDFANADKLASYFGIVPRVSNSNETEKTGRITKRGNKLARTALVQCTLIAIRYSSYLGSFYKKIKQKKSAGKAIIATARKFLKTIYLTIKNNWIFEDFGVYKIKNV

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081359278.1|8937_9399_-|transposase	transposase	A0A1X9I619	Streptococcus_phage	5.9e-06	27.1

Sequences of DBSCAN-SWA_3

Nucleotide sequences of DBSCAN-SWA_3

>NZ_CP009683|12562:20497|DBSCAN-SWA
AATGAAATATGGCTACGCTAGGGTTAGCACTAAAGACCAATCCTTAGATATGCAGATAGATAGCCTTAAAAAATCAGGTTGTCAAAAAATATTTTCTGAAGTTGCTAAAGGAGCTAAAGCCGATAGACCTGAATGGCTAAAACTGCTTGATGAAATTTCTGAAGGTGATACATTAATAGTTTGGAAATTTGATCGTATGGGAAGATCTTTGCATCATCTTATAAAAGTAGTTAATGATTTGCTAAATAAAAATGTTGGTATCATAAGTTTGAACGATCCTATTGATACTACAACAATACAGGGAAAATTAATGTTTAATATTTTTGCTTCACTAGCTGAATTTGAAAAAGATTTAATTAGAGAAAGAACAATGGCTGGCTTAAAGTCTGCAAGATCTCGAGGGAAAATGGGAGGTCGACCAAAAGGCTTATCAGAAGAAGCCCAGAAAAAAGCTCGTATTGCTGAAGCTCTTTACAACCAAAAAGAATTAACTACTCAGGAAATAGCAGATCAACTAAGTATTTCTAGAACTACTTTATATGAGTATCTAAAATTTAGAAATGTAAAATTTGGATAAGTTCTATAATATATCTTGACACTAACGTTACGTCATACTTTAAAGTTACACCTGAGGAGTACTAAAAATGACTAAAACATGGTATGTAAAAGAATTCAGTAAATTAACAGGTGTATCTGTTAGGACATTACATCATTATGATCATATTAATTTACTAAAGCCTTCTAAGCGTCTAGAAAATAGTTATCGTAAGTACTCTGAGGAAGATTTATTAAGATTACAACAAATAGTAGCATTAAAGTCTTTTGGTTTTAAGCTTATACAGATTAAGAATATACTCTCTAAAAAAATAAATCTGATAGAAAATCTTAAAACTCAATCAGTTTTTTTAGAAGAAAAAGCTAAGCTGTTGCTTAATACATCGGATGCTTTAAAAGCTGTTATATCTGATTGTTATGATAATAAATCTATTAACTGGAAAAAAATAATAAAATTAATAGGAGTGTATCATATGACTCAACAACTAGAAAAAACATGGATAGGTAAAGTTCTAAATGATAAAGAATTAGAAGATTATGCTAAACTAGAGCAAGATTTAGAATGTGAGAGACCATCAACAAAAGCTATCTTTGAAAAAAGATGGAAAAATATTTGTAAACAGATTAAACAAAATCTAAATGAAGATCCCAATAGCAATATTGGAGTTAAAATTGGAGAGATTACGCATAATGCTATTTACAATTTATATGGTCAGAAATTTGCTGGGCTTAAGCATAGTATTTGGGAAAAAGGATTCAAATCTAATGCGAATAATTCTAGCTTAACCCCAGAGATGGTTAAATGGCTTGATTCTGCTATGGGAGCTTATTGGCAAAATAGGAATCGTAATATATTAAAAAAAATAGGTAATGAACCTGATGATATTTTGATTGAAGAGTTTAGTTCTTGCTTACGTGAAATGTATGGAAATGAGGCTCAACTAAAACAAAATCTTTTTGAAACTATTTTTAAATTAGACGAGGTACCAGAAAAATCTAAAGCATGGATTAGAAAACATATATACTCATTAATTTAAATTGCTTTCTTAGCTATATTTTATGAAAACCGAAAAAATGGAGGGCTCTGCAAACAACCCCTTAAAGAGGGTTGATAGTCATACTAAGTACCATGCTGTTTCAGAGATGGTATTTTCTGAAGAAGACTTAATTAACCTCAGATCGGAATTAAAAGTATTATAAATTAAAGGTTTGGAAGTATTTTTTGGTTAAAATAAGCGAAAAACCTTTAAATTTTGACAATAATGATAGATCAACTTATCTTAACCTTTTGTCGCATAGACGACTTTTGTATTATTTATCATAAAGAATTACAAAGCAAGTCAATTGATTACAAAAAGAAAAAAGTAGGAATCAAATCAAAATTATCATTAAGTGGACCATAGGGAGCGAATGAACAGAATGTGGCGGTTTTGAATTAGGTATTGTCTTTTTTAGTATTTATTGCACGATAGTATACAGACTTACTTATATTCATTATTTCGCAAATCTGTTTAACAGAGAATTCGCCAGAGTTTTTTAGTTTCAATAATTTTTTTATACTTTTTGAGTTTAAACTTTTAGGCCGTCCACCTTTTCGTCCTCTAGCTCTAGCAGCAGCTACACCAGCTGAAACTCGTTCTTTTATTAGTTCCCTTTCCATTTGTGAGAATGCTGCACATATATTAAAAAGTAACATTCCCATTGGAGTTGTAGTATCTATATTATTTTCTAGCGAGATAAACTGAACATTTTTTTTATGAAGCTCATTAATTAGACTAGTTAATTTTATCATTCTTCTACCGAGTCTATCCAATCTAACAACACATACAGTATCACCTGGTCTAAGTCTATTAAGCAATTCTTGTAATTGCTCACGATCATCTTTTGCTCCAGATACTTTCTCTGAAAAAATCTCATCGCAACCAGCTTCTTTTAATTTTTGAATCTGAATATTTAAAGATTGTTGTTCTTTTGAAACACGAGCATAACCAAACTTCATAAATTTCCTATTTTTTTGTCCCAAAAACTTAAAAGATGAGTCAAATTTAGTTTTTTTGTTCTGGAACTAGTTTTGGGATACTATTTAAATATTCTATCATATATAAAATGTTCCGAAACATCTGTGTATCAAAAACATATGTTTTTGGAATATAAAATGTCACTCAAATTATTAAAGGCTTTGTAATGAAACAAAAATTGACTCAAGAACTTATTATTAAGAATTGGACCTTATCACAAGAAGATTTGAGTGAAGCTAAAAAAATAAAGTCCTCTTTTAGATTATATTTCGCTATACAACTATGCTCCTTACGCCAAACTGGAAAATATATAAAATATTGTAGTGAGATATCATCAGATATTATAAATTACCTAACTAAACAATTAGATCTTCCTCCCACATTAATTGTTAATGAGCCTTCAAGACGAAAAACAATTTCCACTCAAAGACAAAGATTATTATCATATCTACAGTTTGATAGATATGAAGGATTAATAATAGCTAGTTTCGAATCATGGATTGAAGCTGAAGCAAGACAAGGTAAGTTACCAAATGAATTAAATTTTGAAGCCCAATCTTTCTTACTTAAAAATAAGATAGTTCTGCCTGGAAGATCAGTATTGGATAGAACTATAGTAAGTATCTGTAATAAAGTTCATAGTGAGATGTTCGAAAATATTTATAATAGTTTGCCTATTGATCTCAAAGAACATATAGATGAAGCATTAGACTCATCCAATGACTCTAAATCATATTTTAATCAGTTAAAACAATATCCACCACATGCAACAGCATCTTCTATAAACATATATTTGCAATTGTATAAAAAATTAAGCTCTTTTAATCTTGAAAGAATTAATAGTAACTTTATAAATTCAAAATTTTTGGGTTATATTTTTAAATTAACAAAGAATTACAACTCTAGAGATATCAAAAGATTCAATGAGCATAAACGATATGCATTAATGATTTGTTTTCTTATTGAGAGCAAAAAGCACTTATTAGATAATTTAATCAAAATGCATGATCAATTTATACAGGAAATGTTACGTACCTGCAAAAATTCTTATGAGAAAAAGTTTAAACAGAATCGTAGATCTCATGGTAAAGATGTTGACTATATGATTGAATTTAGTGAGCTTATTTTAAATGCTAAAAAGGATGAAAATATTTCTATAGAGTCGTTATTTGATCAAATACAAGAGTTAAAATTGCTTGAACATAAAAATAATTTAAAAGCTTATAAACTATTAGATGAAAAAGGGTTAAGTGATACAATTTTACGTAGATATCCAAATTTTAGAAAATACTTTGCCAATTTTATTAATTTACCTTTTAAAGTTGAGAGTGGCAGTGAGTATTTACTCGAATGCATAAATATAATAAGAGATTTAGATGCTGGTAAAATAAAAATACTTCCTTCAAATGCACCACATAATTTTGCTACTAAAGATTTATCCTCTAGGTTAAAAGATAATAATAAGATTAATAGAAATGCTTGGGAACTTAGTGTAGCTATAGAAATGCGTGAAAAATTACGATCTGGAGATCTCTATCTTGCTGAAAGTAGACAGCATATACCATTTTGGAATATGATGATTGATGATTTAACATGGGAGAATGTAAGACAGCAAGCGCCTAATGAACTAGGTTTGTCATCACAAGATATTATAAAATCTGAGCTAGTAAATAGTTTTAATAATGAACTTGCTGAGTGTCTAAAGCTTTGGAACAAAGATGACTTCGCTACTATTATAAATGGTCAGCTAAAGCTTAAAAGAAAAGATAAACTAATCGTCTCTGACGAGGTTGAAAAGATACAGAAGTTAATAGAGTCAGGACTTCCTCCTATACGTATAGAGCAATTACTTATAGATATAGATAAAGTAACAGGTTTTAGTAAGTACTTTACACCTATTCAAGGACATAAATCTAGGCCAAATAATTTTTATAAAACCTTGATAGCAGCTATTATATCTCAAGCTACAAATTTAGGTATTCAAGCAACTAGTGCAAGTGTTCCTGGCATAACTGTTGATATGCTTAGACATGTTATTGGAACTTATATTAATGAGGAGAATATTAATCAAGCAAGTGCTGAAATAGTAAAGCATCACCACAATCATCCTTTAAGCTCTATACAAGGCGATGGAAAAATCTCATCTTCAGATTTACAGAGGTTTAAAATAAGAGCAAGCTCCTTAATGGCTTCTCATTACCCAAGATATTATGGTTACTATGAGAAAGCTATAGGAATATATACGCATGTCTCTGATCAGCTCTCTGTTTATCATACTAAAGCTATATCTTGTGGGCCTCGTGAAGCACTATATGTTTTAGATGGATTATTAGAAAATAATACAGTCTTAGGTATTAAAGCTCACACTACTGATACTCATGGATATACAGAAATAGTCTTTGCCATGTTTTATATATTAGATTTTTTCTTTATGCCTAGAATTAAGGATTTAAAAGATCAACAGTTGTATAAAGCTGATAGAAATCATTCATATGGAGCTTTTCAGCCATTACTGACAAAGACCGTTGACTTAGATATTATCCAAGAACAATGGGATAATATCTTAAGAATAGCAATATCACTTAAAAGAAAAACTGTTCAAGCAAATATTGTTGTTCAACGTTTAACCAGTAGTGGACCAGCTGATAGATTGACTCGGGCTTTTATAAATCTTGGTAGAATTGTAAAAACCAAATATATACTTCAGTATCTAACCAATAAAGATTTAAGACAAACGGTTCAAACTCAGCTTAATAAAGGAGAATATAGACATAAGCTTCCCCGCTGGATATTATTATAATCATCAAAGAACCCATCAAGGTAAAATGTGCTGTGGGAAAACTCCTATAGATACGTTACTTGATGGTAAGAAGATCTAGATGGAGAAGGTTGATAAACTCAATCTGGACTAACAGTAAATGCTTATTTATAACAGGTAACTGTCACATCAGGTCTAGACTTTTACATAAGCATGGGCTTTTGATGATAGGTGACGGAGTGTGAGTTTTATATTTAGATTTTACATATTCACATTGCATTAATTTTATTATAAAATAATATAATAAAAATTTAACTTAATAAATATGAAATGAACATTAAAAAATTAATATCCATAATGGTTCTAGGTACTACTTTGGTATCAGGTGCTTTTGCTAATGGCATCTCAGATGCTGAAAAACAAATAAATAATATTAATAATTCGGATAATAAAGACTATGTTTGTATCCTCACGTTTAAAGGAACTTTAGAAAGACATTTAAACACTTATGGTTTTGAATATGATTATTTAAACAATGAAAAAATAATACACTTCTCTGATAAAAAAGTTTGTGAAGAAATAATAGGAGATTTATTTGTACCATTAGCAGACAAAGGAGATATGTTTTTTAAAACGAATGAAAGTAATTATATAACTAATAATAATCTGCTTAACGAAAAAGCTACTTATACTTTAGAGGCTGTAACCAAAAGTACGAAGGAAGTAATATTTGCTTTTTCACATAATGAGAAATTTCTTGGCAAAGTTGCTTTTAGGCTTAATTCTTATGAAAATTAAATTAATAGCGGCTATCCTAGATAACTAAGTTATGCTAGGATAGTTTTGATGAGGAAAAGTAGATTAAGTTCATATAAACAAGATAAGTTAATAGGGTGATTTATATTGAACTAACTTAGTTACTTCTAAACGGTAAAATTACAGGCACAAGCATTAATAAAAAAGCTGTCAATTTAATAGCTTAATTAGGATAAATGTATCAATTTTTACCAAAATTGGTAAGTATTGATACAAAATTCGGGTCTTTATACTATTTCTTTGACAAATAATAGTAATTTGACCATATTAACAATATATGTAGTGTTAAATCAACAGTCTTTTTAACTATATTCTTACAATATCCTCGAAAAATTCGTAGATTTATTTACACTACTAATGCGATAGAATCGCTTAATAGACAATTTAGGAAAGTTATAAAAATAAAAAACTATTTCCTAAAGATGACTCTGTTTTCAGGTCTCTGTACTTGGCTATAGATTATTTGACTAAAAAATGGTCTATGCCTGTTAGATATTGGAATGAGGCTATGCCTTATTTTGCTATCGAGTTTGAAGAAAGAATTCGGAGTTTTATGTACGTGATTTACACAGTTAAATGGAAAGGCTCATAATGTATATTAATTATCAATTAATAGGATCAATATTCCTAGATATATCTTTATTAATATACACGGTTCAATTTATCCCTCAAATATTTCACAATTTTTTCAATGATAAATCGACTTACAACATAAGTGAATTAACCCAGTTACTTATGTTTACTACAATTTTTTGCAATATAATCCAAGCGGTAGGTTACTATATGCATTGGCAATATTTAGCTGTTGCTATTATCTATTTAATTGGAGTATTAATCCAACAGATCCAAATTTCCCTTGCTAAGAAAAAGTATTTAACAATTTGTAATTATTGTTTCATAATAGTCTCAGTTTTTGCTATTTTAGCTATTATCTTTAATGATTTATACATTACTTTTATAGCAGGTATTATTGTTATAGTGTTTCATTTATTATATTGGTTCCCTCAAATTTATAAAAATTATAAGCAAAAAAGGTTTGATGGTTATAGATGGGAATTTATATTTTTAGGACTATTAGCTAATATATGTGATTTAATAAGTAGTTTTTTACTAAAATGGGAATTAATTGTAAGAATAAATATAATTATCATAATATTTATTTTATTCATATTAGTTTATCAGAAAATTATTTATTCTAATAGACCTCTTTAGAAACTATAATATAATGTTTATAGGCTTTGTTTCTTACCCCCCTAAATTGGAAGAAAGTTGATAAAATTAGTATAGGAATTTAAACTAAATCGATTTTAAAATATCATAACGTATTAATGCCTCATAAATACGCTAGCTCTAAAGGGTGGCATGTACCAAAACAACAATATAAAATTACAAATTGGTCTGAGTATAATCAATCTCTGAAAAATAGAGGTTCTATAGATACCTACGGGTAAACCCGTGGTACTTATGCGGCACAGCCGCTACATAACTCCGTTATGATTTACAGATCTAATTCGATTTGACTTAAATCCTCAAGACCCTGATGTTCAACATATTTTCTAATCACTTCTTCATCTACACCTACGCTACTTACAAAGTAGCCTGGCGACCATACTATATTTTCTTTCCAATAAACTTTAGATAACCACTTAAATCTAGATCTTAGTTCAGAAGCTGTTTGGCTTTTTAACTTACTTATTACCGATGTAATACTATACTTTGGTGGAATTACCATAACCATATGTAAATGATCATTATCAAAGCCAATCGCTTCTAACATTACACCAGGCAT

Protein sequences of DBSCAN-SWA_3

>NZ_CP009683|12562:20497|15300_17934_+|WP_071660648.1|transposase|DBSCAN-SWA
MKQKLTQELIIKNWTLSQEDLSEAKKIKSSFRLYFAIQLCSLRQTGKYIKYCSEISSDIINYLTKQLDLPPTLIVNEPSRRKTISTQRQRLLSYLQFDRYEGLIIASFESWIEAEARQGKLPNELNFEAQSFLLKNKIVLPGRSVLDRTIVSICNKVHSEMFENIYNSLPIDLKEHIDEALDSSNDSKSYFNQLKQYPPHATASSINIYLQLYKKLSSFNLERINSNFINSKFLGYIFKLTKNYNSRDIKRFNEHKRYALMICFLIESKKHLLDNLIKMHDQFIQEMLRTCKNSYEKKFKQNRRSHGKDVDYMIEFSELILNAKKDENISIESLFDQIQELKLLEHKNNLKAYKLLDEKGLSDTILRRYPNFRKYFANFINLPFKVESGSEYLLECINIIRDLDAGKIKILPSNAPHNFATKDLSSRLKDNNKINRNAWELSVAIEMREKLRSGDLYLAESRQHIPFWNMMIDDLTWENVRQQAPNELGLSSQDIIKSELVNSFNNELAECLKLWNKDDFATIINGQLKLKRKDKLIVSDEVEKIQKLIESGLPPIRIEQLLIDIDKVTGFSKYFTPIQGHKSRPNNFYKTLIAAIISQATNLGIQATSASVPGITVDMLRHVIGTYINEENINQASAEIVKHHHNHPLSSIQGDGKISSSDLQRFKIRASSLMASHYPRYYGYYEKAIGIYTHVSDQLSVYHTKAISCGPREALYVLDGLLENNTVLGIKAHTTDTHGYTEIVFAMFYILDFFFMPRIKDLKDQQLYKADRNHSYGAFQPLLTKTVDLDIIQEQWDNILRIAISLKRKTVQANIVVQRLTSSGPADRLTRAFINLGRIVKTKYILQYLTNKDLRQTVQTQLNKGEYRHKLPRWILL
>NZ_CP009683|12562:20497|13205_14153_+|WP_071660646.1|DBSCAN-SWA
MTKTWYVKEFSKLTGVSVRTLHHYDHINLLKPSKRLENSYRKYSEEDLLRLQQIVALKSFGFKLIQIKNILSKKINLIENLKTQSVFLEEKAKLLLNTSDALKAVISDCYDNKSINWKKIIKLIGVYHMTQQLEKTWIGKVLNDKELEDYAKLEQDLECERPSTKAIFEKRWKNICKQIKQNLNEDPNSNIGVKIGEITHNAIYNLYGQKFAGLKHSIWEKGFKSNANNSSLTPEMVKWLDSAMGAYWQNRNRNILKKIGNEPDDILIEEFSSCLREMYGNEAQLKQNLFETIFKLDEVPEKSKAWIRKHIYSLI
>NZ_CP009683|12562:20497|19299_19920_+|WP_071660650.1|DBSCAN-SWA
MYINYQLIGSIFLDISLLIYTVQFIPQIFHNFFNDKSTYNISELTQLLMFTTIFCNIIQAVGYYMHWQYLAVAIIYLIGVLIQQIQISLAKKKYLTICNYCFIIVSVFAILAIIFNDLYITFIAGIIVIVFHLLYWFPQIYKNYKQKRFDGYRWEFIFLGLLANICDLISSFLLKWELIVRINIIIIIFILFILVYQKIIYSNRPL
>NZ_CP009683|12562:20497|12562_13138_+|WP_071660645.1|DBSCAN-SWA
MKYGYARVSTKDQSLDMQIDSLKKSGCQKIFSEVAKGAKADRPEWLKLLDEISEGDTLIVWKFDRMGRSLHHLIKVVNDLLNKNVGIISLNDPIDTTTIQGKLMFNIFASLAEFEKDLIRERTMAGLKSARSRGKMGGRPKGLSEEAQKKARIAEALYNQKELTTQEIADQLSISRTTLYEYLKFRNVKFG
>NZ_CP009683|12562:20497|14551_15115_-|WP_071660647.1|DBSCAN-SWA
MKFGYARVSKEQQSLNIQIQKLKEAGCDEIFSEKVSGAKDDREQLQELLNRLRPGDTVCVVRLDRLGRRMIKLTSLINELHKKNVQFISLENNIDTTTPMGMLLFNICAAFSQMERELIKERVSAGVAAARARGRKGGRPKSLNSKSIKKLLKLKNSGEFSVKQICEIMNISKSVYYRAINTKKDNT
>NZ_CP009683|12562:20497|14175_14316_+|WP_155760340.1|DBSCAN-SWA
MKTEKMEGSANNPLKRVDSHTKYHAVSEMVFSEEDLINLRSELKVL
>NZ_CP009683|12562:20497|18222_18690_+|WP_155760341.1|DBSCAN-SWA
MNIKKLISIMVLGTTLVSGAFANGISDAEKQINNINNSDNKDYVCILTFKGTLERHLNTYGFEYDYLNNEKIIHFSDKKVCEEIIGDLFVPLADKGDMFFKTNESNYITNNNLLNEKATYTLEAVTKSTKEVIFAFSHNEKFLGKVAFRLNSYEN
>NZ_CP009683|12562:20497|20206_20497_-|WP_081359280.1|transposase|DBSCAN-SWA
MPGVMLEAIGFDNDHLHMVMVIPPKYSITSVISKLKSQTASELRSRFKWLSKVYWKENIVWSPGYFVSSVGVDEEVIRKYVEHQGLEDLSQIELDL

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071660645.1|12562_13138_+	recombinase family protein	E5FFF9	Burkholderia_phage	1.6e-37	43.2
WP_071660646.1|13205_14153_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_155760340.1|14175_14316_+	hypothetical protein	NA	NA	NA	NA
WP_071660647.1|14551_15115_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.2e-32	46.1
WP_071660648.1|15300_17934_+|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	3.1e-83	26.6
WP_155760341.1|18222_18690_+	hypothetical protein	NA	NA	NA	NA
WP_071660650.1|19299_19920_+	PQ-loop repeat-containing protein	NA	NA	NA	NA
WP_081359280.1|20206_20497_-|transposase	IS200/IS605 family transposase	A0A1S5REW8	Helicobacter_phage	6.8e-08	34.9

Sequences of DBSCAN-SWA_4

Nucleotide sequences of DBSCAN-SWA_4

>NZ_CP009683|30377:33067|DBSCAN-SWA
ACTACTTATTAATTATTTCTATCAATTCAACACAATAGTCATAAGCTGTATTTATTGCTTTATTTTTAGTATCTTCTTCACGCTTATTATTAGCTTCTAAATCATGAATATAACAAGAATAAGAAACTATATTTTTATAAGCTTCTCTATCTAATAATCTATTATTAAATACGATACTACCAATTTCTTTAAAATCATTTACGATTGCTTGTTCTATTTTTGTATGAATAGCAGCATTAGTTTGTGTTCTTAATAAAGCATACTTTATTTTTCTATTTAGAACCTTTTCTTGTTGTCTAATAAAAGCTGCGATCTTTATAGCTTCTTTACCATCCAAGTCAGAAGGTTTGCATGGGATTATAACTAAGTCTGCTTGACTAATAGCATATCCCATTGTCATATTTGCAGAACCCTCAAGATCAACTAACACAAACTTTGTATTACTTTCTGCCTCTTCTATTATATCTAAAATATTAGATTGATTAGCTTCCTTAATATTCTCACATCTAACTTCCTTACCCCATGATGCTAAATGTTTATTTGGATCACCATCTACAAGAGTAAAACTTATACCTTGTCTAGCTAATTCTGAAGCTAATATAATACAAGCTGTTGTTTTACCACTTCCACCTTTTGATGAAGCATATACTATAGTAGGCATTTAATTCTCCTTACTTATTTAAATTACGCTAACTTGCTAACTTGCTAACTTGCTAACTTGCTAACTTGCTAACTTGCTAACTTGCTAACTTGCTAACTTGCTAACTTGCTAACTTGCTAACTTGCTAACTTGCTAACTTGCTAACTTGATATTATGATAACTTGATAGCTTTATAAAGACTTTTTTATAATTATTTTTTTGTAAACCTAGTTTACACAGTATTCTATTTATTATATAATTAACTTAGTAATAAAATCGAGCTGTAACTATGAAACCATCAAAGAAATCAGATAAAGAATTATTTTCTTTGATAGAGCAGAAAATAGCAGATAAAAAATATATTTTCTTACCTCATGTTAGACAAAGAATGTTAGAGAGAAATATTACCGCTATTGATGTTTTATATTTATTACAAGGATATTCAAAACGTATTAGAAATAAAAAGAAAGATAGTTACGAGCATGATAGAGAAGATTGGAAGTACTGTATTGAGGGTAAACCTAGAGATACAAATATACGAGTAATAATAACTTTCACATTAGATATGATGCCAATTATTACTGCTATTAATTTGGAGGAAGCGTCATGAGTAATTTAGAAGAAAAAGTAGTTAAAGAGTATGTATATACTGGGATGATTTTTCCTGTTACATTAAAAAACGTGAAGATGGTTAAATATGACAATGAATGGTGTCCAATTATAGATGATATAGCTATAGCTAACGAATGGATAAAAAAAATAGGTGAATCTAAAGACCGTATAACTGGTAATCAGTTAAAGTTTATCCGTAGCTATTTTAAAATGTCATTACGCCAGTTTTCAGAAGTAGTAAATGAATCTCATACAGCTATAGCAAAATGGGAAAAGTCTGGTAATGAAGTAGCTAAAATGGATCTTAACATTGAAAAAATTATTAAGATGTATATTTGTCGTGAAGTTATGAAAGATACTGATGATAAAAGTCTTATGAAAATTTTTAATAAAATTTTAGACTTCCGACCAAAAAATCTAAAAGTAGCTCATTAATAAAAACATTCCCAAATTAGTCCCTTTATGGGAAAGTTTCTCTAGAAAACTAATTTCAAAGCCTTTAAAATTATAAGCATGATTTTATAGCCCAATAGTCTTTTTAGGGAAAGTTTATATTTTATGGCAAATAAGGATGTAAACATGAACACATTAAATATTCTAAAAAAAGAATTATATTCAATTATAGAGAGAAAATATAATAATACTTCTTACCATTTGGACTTTATTGCAGTTATAGAAACTTTTAAACAAAAACATTGGCATGAATTATTAGGTAAAGACTACGATGCAGCTTTTGAATTAGTAGAAAAAATTGAACAAACAAATGAATACAAAAAAATGTACTCAGAGAGGGATGAATATATTACTAATTATTATTTATATAGTGAAGGTAACAATATAAACAGATCAACAAATTAATAGCTTATATGCCACCAATTAAACAAAAAAATAAAGATCGTAGACCTAGAGAATTTTTGACAGAAAAAGAAGTTAATGAGCTTATGAAAGCTGCAAATAGGCTAGGTCGTCATGGTCACCGTGATTCTACTATAATTTTCATAGCATATCGACATGCTTTAAGAGTATCAAAGCTAATAGCTTTAAGATGGCAACAAATAGACTTTGAGATTGGTCGTATAAGCGTAAACAGGCGTAAAAATGGTATAGATTCGGTACAACCCCTTACTGGAATGGAATTAAGAGCTTTACGCCGCTTAAAAAGGGATTATTCAACTACTGATTATGTTTTTGTATCAGAAAGGAAAACACCTCTTACAGACTCTACAATTAGAAAGATGATAGCTAGAGCTGGGAATAGTACAAATATAGGTATGCCTATTCATCCTCACATGCTTAGACATTCAACAGGCTATAAGCTTGCTAATGATAGTATTGATACTAGAACTATTCAGCAATATTTAGGACATACAAACATTAAACATACAGTTAGGTATACAGAATTATCATCTAGAAAATTTGATAATCTATGGACTGATTAA

Protein sequences of DBSCAN-SWA_4

>NZ_CP009683|30377:33067|30377_31037_-|WP_071660659.1|DBSCAN-SWA
MPTIVYASSKGGSGKTTACIILASELARQGISFTLVDGDPNKHLASWGKEVRCENIKEANQSNILDIIEEAESNTKFVLVDLEGSANMTMGYAISQADLVIIPCKPSDLDGKEAIKIAAFIRQQEKVLNRKIKYALLRTQTNAAIHTKIEQAIVNDFKEIGSIVFNNRLLDREAYKNIVSYSCYIHDLEANNKREEDTKNKAINTAYDYCVELIEIINK
>NZ_CP009683|30377:33067|31305_31626_+|WP_071660660.1|DBSCAN-SWA
MKPSKKSDKELFSLIEQKIADKKYIFLPHVRQRMLERNITAIDVLYLLQGYSKRIRNKKKDSYEHDREDWKYCIEGKPRDTNIRVIITFTLDMMPIITAINLEEAS
>NZ_CP009683|30377:33067|32494_33067_+|WP_071660663.1|integrase|DBSCAN-SWA
MPPIKQKNKDRRPREFLTEKEVNELMKAANRLGRHGHRDSTIIFIAYRHALRVSKLIALRWQQIDFEIGRISVNRRKNGIDSVQPLTGMELRALRRLKRDYSTTDYVFVSERKTPLTDSTIRKMIARAGNSTNIGMPIHPHMLRHSTGYKLANDSIDTRTIQQYLGHTNIKHTVRYTELSSRKFDNLWTD
>NZ_CP009683|30377:33067|32186_32486_+|WP_172827016.1|DBSCAN-SWA
MANKDVNMNTLNILKKELYSIIERKYNNTSYHLDFIAVIETFKQKHWHELLGKDYDAAFELVEKIEQTNEYKKMYSERDEYITNYYLYSEGNNINRSTN
>NZ_CP009683|30377:33067|31622_32063_+|WP_071660661.1|DBSCAN-SWA
MSNLEEKVVKEYVYTGMIFPVTLKNVKMVKYDNEWCPIIDDIAIANEWIKKIGESKDRITGNQLKFIRSYFKMSLRQFSEVVNESHTAIAKWEKSGNEVAKMDLNIEKIIKMYICREVMKDTDDKSLMKIFNKILDFRPKNLKVAH

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
26114:26131	attL	NA	NA	NA	NA
WP_071660659.1|30377_31037_-	ParA family protein	A0A2P1A2G0	Mycobacterium_phage	4.3e-10	29.0
WP_071660660.1|31305_31626_+	DUF4258 domain-containing protein	NA	NA	NA	NA
WP_071660661.1|31622_32063_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_172827016.1|32186_32486_+	hypothetical protein	NA	NA	NA	NA
WP_071660663.1|32494_33067_+|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	8.1e-29	36.1
33503:33520	attR	NA	NA	NA	NA