CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018031	Alteromonas sp. RW2A1 genome	2 crisprs	Cas9_archaeal,DEDDh,cas3,WYL,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas14j	0	9	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018031_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018031_1

229832-229951

Orphan

Consensus_repeat	Method
GCTAAAAGTGATTGTCTCTCTAGCCACGACATAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018031_1

>merge|NZ_CP018031|1|229832-229951|CRISPRCasFinder
GCTAAAAGTGATTGTCTCTCTAGCCACGACATAAAACGTGACTGTCTCAGTAATTTCTCTATCACTTAAAATAGGGGGAAAGTGGCTAAAAGTGACTGTCTCTCTAGCCACGACATAAAA

>NZ_CP018031|1|1|229832-229951|CRISPRCasFinder
GCTAAAAGTGATTGTCTCTCTAGCCACGACATAAAA	CGTGACTGTCTCAGTAATTTCTCTATCACTTAAAATAGGGGGAAAGTG
GCTAAAAGTGACTGTCTCTCTAGCCACGACATAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018031.1\|WP_071978305.1\|227673_228177_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018031.1\|WP_071978301.1\|222452_222872_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP018031.1\|WP_071978298.1\|220596_221127_+\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|179262
NZ_CP018031.1\|WP_071978315.1\|241691_243254_+\|sodium/solute-symporter	unknown	unknown	gnl\|CDD\|271360
NZ_CP018031.1\|WP_071978309.1\|233773_235117_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341025
NZ_CP018031.1\|WP_071978314.1\|240084_241224_+\|galactokinase	unknown	unknown	gnl\|CDD\|179937
NZ_CP018031.1\|WP_071978317.1\|246255_247356_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP018031.1\|WP_071978303.1\|224609_225302_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP018031.1\|WP_071978304.1\|225294_227664_+\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|274576
NZ_CP018031.1\|WP_071978310.1\|235208_236069_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|378820
NZ_CP018031.1\|WP_071978299.1\|221198_221693_+\|DUF3299-domain-containing-protein	unknown	unknown	gnl\|CDD\|378700
NZ_CP018031.1\|WP_071978311.1\|236396_237398_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380494
NZ_CP018031.1\|WP_071978302.1\|223369_224581_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP018031.1\|WP_071978316.1\|243569_244154_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236362
NZ_CP018031.1\|WP_071978313.1\|239036_240092_+\|UDP-glucose--hexose-1-phosphate-uridylyltransferase	unknown	unknown	gnl\|CDD\|236963
NZ_CP018031.1\|WP_071978312.1\|237831_238854_+\|galactose-mutarotase	unknown	unknown	gnl\|CDD\|185696
NZ_CP018031.1\|WP_071978308.1\|230467_233293_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP018031.1\|WP_071978306.1\|228275_229775_+\|Hsp70-family-protein	unknown	unknown	gnl\|CDD\|212673
NZ_CP018031.1\|WP_071978300.1\|221732_222431_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|379309
NZ_CP018031.1\|WP_071978297.1\|219494_220472_+\|class-1-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236458

Protein	Function_ID	Function_description	E-value
NZ_CP018031.1\|WP_071978301.1\|222452_222872_-\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	2.732e-32
NZ_CP018031.1\|WP_071978298.1\|220596_221127_+\|inorganic-diphosphatase	gnl\|CDD\|179262	PRK01250, PRK01250, inorganic diphosphatase.	7.35287e-114
NZ_CP018031.1\|WP_071978315.1\|241691_243254_+\|sodium/solute-symporter	gnl\|CDD\|271360	cd10325, SLC5sbd_vSGLT, Vibrio parahaemolyticus Na(+)/galactose cotransporter (vSGLT) and related proteins; solute binding domain. vSGLT transports D-galactose, D-glucose, and alpha-D-fucose, with a sugar specificity in the order of D-galactose >D-fucose >D-glucose. It transports one Na+ ion for each sugar molecule, and appears to function as a monomer. vSGLT has 13 transmembrane helices (TMs): TM-1, an inverted topology repeat: TMs1-5 and TMs6-10, and TMs 11-12 (TMs numbered to conform to the solute carrier 6 family Aquifex aeolicus LeuT). This subfamily belongs to the solute carrier 5 (SLC5) transporter family.	0
NZ_CP018031.1\|WP_071978309.1\|233773_235117_+\|MFS-transporter	gnl\|CDD\|341025	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli inner membrane transport protein YajR and some uncharacterized multidrug-efflux transporters. YajR is a putative proton-driven major facilitator superfamily (MFS) transporter found in many gram-negative bacteria. Unlike most MFS transporters, YajR contains a C-terminal, cytosolic YAM domain, which may play an essential role for the proper functioning of the transporter. YajR-like transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.21402e-113
NZ_CP018031.1\|WP_071978314.1\|240084_241224_+\|galactokinase	gnl\|CDD\|179937	PRK05101, PRK05101, galactokinase; Provisional.	0
NZ_CP018031.1\|WP_071978317.1\|246255_247356_+\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	0.00214907
NZ_CP018031.1\|WP_071978303.1\|224609_225302_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.45264e-97
NZ_CP018031.1\|WP_071978308.1\|230467_233293_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP018031.1\|WP_071978310.1\|235208_236069_+\|alpha/beta-hydrolase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	0.00215343
NZ_CP018031.1\|WP_071978299.1\|221198_221693_+\|DUF3299-domain-containing-protein	gnl\|CDD\|378700	pfam11736, DUF3299, Protein of unknown function (DUF3299). This is a family of bacterial proteins of unknown function.	3.66798e-57
NZ_CP018031.1\|WP_071978311.1\|236396_237398_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380494	cd06270, PBP1_GalS-like, ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type 1 periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar binding of ABC-type transport systems.	1.56617e-122
NZ_CP018031.1\|WP_071978302.1\|223369_224581_+\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.05838e-16
NZ_CP018031.1\|WP_071978316.1\|243569_244154_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	1.3738e-64
NZ_CP018031.1\|WP_071978313.1\|239036_240092_+\|UDP-glucose--hexose-1-phosphate-uridylyltransferase	gnl\|CDD\|236963	PRK11720, PRK11720, UDP-glucose--hexose-1-phosphate uridylyltransferase.	0
NZ_CP018031.1\|WP_071978312.1\|237831_238854_+\|galactose-mutarotase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	4.21386e-138
NZ_CP018031.1\|WP_071978304.1\|225294_227664_+\|FtsX-like-permease-family-protein	gnl\|CDD\|274576	TIGR03434, ADOP, Acidobacterial duplicated orphan permease. Members of this protein family are found, so far, only in three species of Acidobacteria, namely Acidobacteria bacterium Ellin345, Acidobacterium capsulatum ATCC 51196, and Solibacter usitatus Ellin6076, where they form large paralogous families. Each protein contains two copies of a domain called the efflux ABC transporter permease protein (pfam02687). However, unlike other members of that family (including LolC, FtsX, and MacB), genes for these proteins are essentially never found fused or adjacent to ABC transporter ATP-binding protein (pfam00005) genes. We name this family ADOP, for Acidobacterial Duplicated Orphan Permease, to reflect the restricted lineage, internal duplication, lack of associated ATP-binding cassette proteins, and permease homology. The function is unknown.	4.08106e-31
NZ_CP018031.1\|WP_071978306.1\|228275_229775_+\|Hsp70-family-protein	gnl\|CDD\|212673	cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins. This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs.	1.62217e-101
NZ_CP018031.1\|WP_071978300.1\|221732_222431_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|379309	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily. This family contains members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily.	5.45744e-12
NZ_CP018031.1\|WP_071978297.1\|219494_220472_+\|class-1-fructose-bisphosphatase	gnl\|CDD\|236458	PRK09293, PRK09293, class 1 fructose-bisphosphatase.	6.45948e-179

>NZ_CP018031.1|WP_071978306.1|228275_229775_+|Hsp70-family-protein
MTAIGIDYGTSNSEVVYFDGATHQHIKLDPLDKKGNKIRSSVFIYFEDELPPPPDAMVEAKVAQLQRVINEQIDKAKDGYYSAKDPKEQATYNQRINSLRGDLHNKPALQRKAIAQLMHVMSLDEIPLLRLVEHGKFAFGEAGFRRFLKMPEKGRLIYSPKNFLGASLDSDQKKAFVGIIAKQLGYFKQCAQEQLSSNIDSAVIGRPVKFHGTRGEEGNIQAIEIMTEAAKKAGFATVNFLDEPIAAAYKIEQTLPRDTTTLIVDIGGGTTDICCINLSPERTNQLDRKQDVLSVTGRRLGGMDCDKSLVLKTIAPEMGMGLKMMNGLPVPPTYFSDMCAVDNIPALMRFFSDDYGLDISQTMSVIKEPAQLERLLTVQENKLSARVVNSARMAKELLSSKSRITLPLHYIEDEFGVDISQEALQKALKPWLDKVKTLVTECLDNTDVKPEVVMITGGMSLSPIVVDALYENLLTGLPRLENDAFNSVCEGLAIQASKF
>NZ_CP018031.1|WP_071978305.1|227673_228177_+|hypothetical-protein
MKYLLYGIVLYCALSLNAVKAVEVTEVLIEPENYKATGFGNVTPLTYLVNRKGETVFKQNSVARDLARHFNNTKPIDSSENDLAILSKQLPDDYDFSDYDYTLFIVRAQKDEHCPPGKKQNSINEKVIGLLEQYNVHYVKVLKKPADSVTVTIVSEEEYNRLTGGGN
>NZ_CP018031.1|WP_071978304.1|225294_227664_+|FtsX-like-permease-family-protein
MHSLSFKLSLDLASNWWLQFSKQWTNWFGICLLGLPIAFFAQVLSIISAYENPSFASIKHPERIAQVSYKTADTQSALPFYLAQELTRPNAGPENIKGITYQKNAWLKSDGVIKRDVYASFFSGGYEYLGISPLKGSLEKLEFPNANEQIHVAISYSLWQALDKGDDIIGETLQVGAELLIISAVMPQEFIGLRPGSETDLLIPYAYIERLNVGTFDAVSPDTYSYLLTSSANPVASERLEAYLQQQALFFDDEKLEIIDAFGISDSEFVALSSRLERLKYLFLVLLIFSAIAFLSNLCDDLEKRQNEHALRKMIGANKQQLFAQLILELLFSLSAVATAAVVYYLMSPAYFNFAVPELQTAVNNNWTSLAGILAATLLPMFGIAIVLFSLQKKVFASSLGRGGSVSLGVKLQAFFLLAIMISISCISISKSVDLSLRQYAYYQKDRGFDESELEIVTFDIPRFGGTFYTNELPELVIQNIEQIEGIKHAAITTTPFLKNQNAYTSIYTQDLRPLGGKNNPGVLTSLVSPNFFEVAGIELIKGNTLTWGNRNQAVISEALYHKFFDGQTLSQMKLLIDTSDNDKQVIDVVGVANDVHLNSIDDIAEPIVYQVSPTLLGVESLLIRTKLSSFQVEKAVDTGLKNIDARLSNPTSSNLEALIDEQEAPQRALITTSLLVTVVLLSTTILFSYNSINILLIKSQREIALRLSLGAMVHDIVKREMLAYLIVSLPVALLTLFFSTSILKDTQFAGSDAILHYAGGFSVLSIVVLVTFLFGVQRTKKVSWQALT
>NZ_CP018031.1|WP_071978303.1|224609_225302_+|ABC-transporter-ATP-binding-protein
MPELIQFKNLDFVYPHSTVPALSGVNMTISEGDYVAIVGTSGSGKSTLLSILGLINEPSSGQYLLLDTNVTDLTQQSVAKLKNAEIGLIFQNFNLLGHLTVYQNVCLPLTYNASVSRKEYREKVVSVLQLVGMEDYLTRYPRELSGGQQQRIAIARAIVNDPSLILADEPTGNLDTSNAEIIFDILESLNKAGKTICLITHDIQFARRAKVQYTIKDGRLTHAKSEVDNA
>NZ_CP018031.1|WP_071978302.1|223369_224581_+|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MQAHIKTKQNISKSRLFLILSTLLILIALFVGFYQSLKSPASLDIYEVKFTPSPSQLRGIGKVVPINTQVVAANEDGYVSEIYVHQGQRVKKGDKLFSLTNPLLIREFREAESQALETRANVAFRISQLKLEGYKLESDISEAESLLKRQQLEYDANRTLHKAGIVSSIRYQQQELTLAQAKLSLESARKQLEMFAENKEEQVAALNLQNDSASEKVAYYKERINDLTVNAAISGLVRDLKLSSGQAVNIGQTLASIVDDSSLVAEIKIPQYLSHKISLDSTAKVISPAATQEGKVSFIDSIVREGAVQVTIELAPDAGKQFSIEQSIEAEITSSDVEMVASVSKPPNYSDQINWTVFKIYDGEMVATDVRVSHTSNESLFLSGNLKEGENIALVQNSSEIEN
>NZ_CP018031.1|WP_071978301.1|222452_222872_-|acyl-CoA-thioesterase
MTTETPLVTSFDVRFCETDALQHVSNTALVAWFEAAREPIFRMFTPELDLQNWPLILASYKVEFLAQIFYGKTVTVKTYISRLGNSAFDVFQELWQDDKLCSTGVTTMVHFDYKTQRSAPIPDDVKAMLQSHYKDISGK
>NZ_CP018031.1|WP_071978300.1|221732_222431_-|2OG-Fe(II)-oxygenase
MSDLIEVIDDVLPPELCTQLIERFESSPNLSQGRTGGGVDLDKKRSTDVSISHNNEFQDLFQQVMQHTGKQLVAYIEKYYFALVGPIGLTVKHPKTGEPVKLTGENFEEVGKPNLANLVNYLFRVGDVNAQRYTAGNGGYPYWHSEVYPQLQHNDALHRVMLFMFYLNDVDEGGETDFYYQNRSVKPKAGRMVIAPAYFTHTHRGQIPKSNDKYILTSWLLFNRAEHIYTQG
>NZ_CP018031.1|WP_071978299.1|221198_221693_+|DUF3299-domain-containing-protein
MVTSKVKSFFTLCILTTSVLLSAFSVQAESEPVEVYWEDLVPPGFNELAPPAVQHNGEMSQLQPDAPVVESYDGKRVKIPGFVVPLEGTAELTTEFLLVPYFGACIHVPPPASNQIVYVKFESGIPIDNIYDAIWVTGELSTDGWKGDIASVGYRLKGEAIEGF
>NZ_CP018031.1|WP_071978298.1|220596_221127_+|inorganic-diphosphatase
MSLSAVPAGKNLPEEVNVIIEIPAHADPVKYEVDKDTGALYVDRFMATCMHYPTNYGYVNNTLSEDGDPVDVLVMTPFPLLAGSVIKCRPVGVLNMTDESGKDAKVLAVPIDKLSTIYRDVKELADVPPLLLKQIEHFFEHYKDLEPGKWVKIDGWDDAAAAKAEIVSSVKRFEAE
>NZ_CP018031.1|WP_071978297.1|219494_220472_+|class-1-fructose-bisphosphatase
MKRLNSQLQQDGAPLELILLIRTLLAGCKEISFRVSQGALAGVLGSTLSENVQGETQKKLDVISNHILKDTLRESGYVKAISSEEEDDVVPCNPEGKYLVSFDPLDGSSNTEINSLIGTIFSITHAPQWMEPNDPSAFLQPGTQMVAAGYVLYGPSTMLALTTGRGTHIYTLDKTHGGFLLTHPNIEVPAQTSEFSINASNQRHWEPSMQAYIADLLAGKDGPRGKNYNMRWVAAMVGDIHRLLCRGGIFMYPFDNRDPSKPGKLRLLYEANPMAFLMEQAGGKAETGNGRILEVMPEEIHQRVPCIIGSSEEVEMCVSYAEKAK
>NZ_CP018031.1|WP_071978308.1|230467_233293_-|excinuclease-ABC-subunit-UvrA
MDKIEIRGARTHNLKNIDLTLPRDKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLMFARVGTPRCPDHDVPLDAQTVSQMVDKVLAMPEGSKLMLLAPIIKERKGEHVKALQNLSAQGFIRARIDGEVCDLSDPPPLDLHKKHTIEVVVDRFKVRDDLALRLSESFETALSLAGGNAVIADMDDKDAEEIVFSANFACPHCGYSLSELEPRLFSFNNPAGACPTCDGLGTRNFFDPSRIITNTELSLSGGAIRGWDKRSYYYFQMLQAVADHYKFSLTAPFEELEDAHKDIVLYGSKGKSLSFKYINERGDIMERKHPFEGIIPNMERRYRETESNSVREELGKYLSQQHCSSCNGSRLRVEARNVFIQQTTLPTIADMSIAEAYTFFETLDLAGQKAQIAEKILKEILDRLRFLVNVGLNYLSLSRSADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLKTLTHLRDLGNTVLVVEHDEDAIRQADHVIDIGPGAGVHGGEIIAEGTIDDILKSEHSLTGKYLSRREKIDIPEKRTPAKDNKWLTLKGATGNNLQSVDLRIPTGVMTCVTGVSGSGKSTLINDTFYKIAQRELNKATTAEAAPHVSMEGLELLDKVVDIDQSPIGRTPRSNPATYAGIFTPIREMFAGTQEARSRGYKPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVPCDVCMGKRYNRETLDVKYKDKNIHEVLEMTVEDARKFFDAVPSISRKLQTLMDVGLSYIKLGQAATTLSGGEAQRVKLAKELSKRDTGQTLYILDEPTTGLHFHDIKQLLAVLHELRDHGNTVVVIEHNLDVIKTADWIVDLGPEGGSGGGLIIAEGTPEHVAEQEVSHTGRFLKPLLE
>NZ_CP018031.1|WP_071978309.1|233773_235117_+|MFS-transporter
MNALELRAALALASVYVLRMLGLFMVMPVLAVAAMDYPDYSPLLVGLAVGGYGLTQAALQIPMGMMSDKWGRKPVILLGLSVFAIGSFVAANADTMAWMIVGRILQGAGAIAGAIMALATDVSRESQRAKVLAIIGIAIGFSFYIAVIVGPLIANRFGLSGVFAVTGLLAILCIPLVKWVVPNSEPLSSGETLPQKGQLGQLILSKQLWRLNVSVLILHMLITLLFVQLPVTLTDFDMSLSEHWRMYLPVLGASIVGLIIMMGAARGRTPKSLLLLGAVFMGSAFFALGISSANWWLTTAAVILFFTGFNYLEANFPALVSSIAPAGQKGTAMGIYASFQFFGAFLGGMISGVVTDVWSPNTAYMVGAASTLLWLYIISGIKEVSRVKRVMMNVENPDASAQNTLKEQLLTVPGVLEVTFNTQSDAVYLKVDRDFDAIKARAVIRPI
>NZ_CP018031.1|WP_071978310.1|235208_236069_+|alpha/beta-hydrolase
MAFKNVCSVVIACLLLFGCAINVTPSAFFYQDTTPKSLDTTRLHSAIQKDNLSAGISIVELENEGGQTLRGVAVSYANPIVNIVFFADNRMPLSENNSVIHQLGKLPANILWLDYQGVGASEKADKLNINAIKQDALTQFDYVESAFDTSIPTIVHGRGIGSYFASYVAANRQIDGLVLDGAFNNISDLIANMVPGFSNSFTAMKLHDEVHSMQIAPILRHFDGPLWLLVGARDKITPQPISEQLLADSASSKKHLSVIPEATHNATLNSDFAIAEYKRFVSQLAN
>NZ_CP018031.1|WP_071978311.1|236396_237398_-|LacI-family-DNA-binding-transcriptional-regulator
MATIKDIAQAAGVSLATVSRVINDGPKVGNDTRKRVKKIMEEMGYRPNANARALVTKRSASLGVVIAELHDPFFAMLAHGVESVTRKNNVQILLSAGSIEKETELRAIETLLEHRVEAMVVHSKALDDKTLIEFSKQVPGFVLINRYIPEIANRCVWLDNVTGGRLMAEYAINQGHQHVAVISSQYRIDDPNQRLEGVRTAIKNANLVLPESMIEYATPDQEGGELAMQNLLATGAKFTAVLAYNDAMASGAMTMLQDHGIAVPEQVSVMGYDDVLLAKYCRPKLTTLRYPVEMMASKAAELALKYASGKQPEEGLTFKYTPTIIKRDSVVRV
>NZ_CP018031.1|WP_071978312.1|237831_238854_+|galactose-mutarotase
MNIQVSGFGSAKGESVDMFTLTNANSMEVKILSFGGIIKEINLPDASGKPTQCVQTFDSLNDYIADESYRGAIVGRYANRIGNGCFTLDGQEYRLDKNNGEHCLHGGNAGFHKRIWEATSHFDDNAACLELTLRSEEGEGGFPGNVVVKARYTLDNNNALRLTIHATTDKATPLSFTQHAYFTLSNADSVESTVLKINANKVTDADATLLPTGEFIDVKNTPFDFTEPTEIGNRVHNTPGHKLFDIVGGYDHNYVLNNDGSGQAQAQVFAADTGLKMQLFTTLPGLQFYTGNLRNDKQMGALCLEPQYFPDSPNKPHFPSCIATPEKPAKMEICYVFSMS
>NZ_CP018031.1|WP_071978313.1|239036_240092_+|UDP-glucose--hexose-1-phosphate-uridylyltransferase
MAGPFDPSNDPHRRFNPLLGEWVLVSPHRAKRPWQGQSEEPNNEQKPQYDPTCYLCPGNTRVNGEVNPQYTGTFVFENDFAALKKDTVAASDKKGLFQFETEQGCSRVICFSPDHSKTLPELTDEERLDVVECWKAQTQELGQHYQWVQVFENKGAMMGCSNPHPHGQVWAQQHLPTDPAKKEVQLSGYFAEHGRALLADYAQQEIAKQERVVCQNDDWVVVVPYWAAWPFETLLLPRFDVCALHELSKGQSLTLAQIIGDITARYDNLFETSFPYSMGWHSAPFNSKAHPEWTLHAHFFPPLLRSASVRKFMVGYEMMAEAQRDLTPEQAAERLKALSSKHYKKREITNG
>NZ_CP018031.1|WP_071978314.1|240084_241224_+|galactokinase
MDNQIFSSSFEHHYGEVPALIAHAPGRVNIIGEHTDYNGGFVFPAAINFGTWVAASKRRDNTIVVTATDYEDQRNQFSLNDIQYDKEQGWANYVRGVVKVLKEDFPTVGGANLLVTGNVPQGAGLSSSASFEVAILKAISSLYELPLDGVKAALLGQKAENTFVGCSCGIMDQLISAMGNEGKAMLLDCQSLSIEHSPLPSTHQIVIINSNVKRGLVDSEYNLRREQCESGASLLGVSSLREATIEMLEAAKSDMPEVVYRRAKHIITENVRTLAASDALKAGDIATVSKAMAQSHASMRDDFEITVPPIDYLVSIIDELLGSSGGVRMTGGGFGGCVVALVPTDSVDAVKEVVDKSYFDKTGYHADIYVCTATQGAFA
>NZ_CP018031.1|WP_071978315.1|241691_243254_+|sodium/solute-symporter
MKLATLDITLFVIYVIALNGIAAWVSREKAGHEKDTNDYFLAGSSLPWWAIGASLIAANISAEQIIGMSGSGYQIGLAIASYEWMAAITLIIVGKFFLPIFLKHKIYTMPQFLEQRYDHRVRKVMAIFWLGVYVFVNLTAVLWLGALAINTIAGVDMMYGMIFLGLFSLAYSLYGGLKAVAFTDIIQVVLLVFGGLFLSYTALNLISDGAGPIQGFIDLTQQLPGKFDMILARDNPHYMDLPGISVLIGGMWIMNLSYWGFNQYIIQRTLAAKSLQEAQKGIAFAAFLKLLMPLIVVLPGIAAVILVPELAKPDQAYPSLMTLMPVGLKGIIFAALVAAIVSSLASMTNSVSTIFTMDIYKDKRPNETQSHYVKVGRSVSLLALVIAMITAKPLLGNFDQAFQYIQEFTGFFTPGICALFILGMFWKKTTANGGLLAALGSFVLSIVFRQFWPELPFIDRVGIVFVLCIALAVVVSLLEKKGVHENAVHLDEVQFHTTRGFNIAAIAVIFILIAFYTAWW
>NZ_CP018031.1|WP_071978316.1|243569_244154_+|single-stranded-DNA-binding-protein
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQPQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVEGKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRGGEAGGGNGGYQRPQNNQGGGYQNQGGGYNQAPAQGGQQQGGYNQNQGGGFNQAAPQGGNQPQPKTPPMAEPDFDFDDDIPF
>NZ_CP018031.1|WP_071978317.1|246255_247356_+|hypothetical-protein
MKLNYPASQLARAALLTTMLSITPLSTTFAADSSVSTSSEKSAELTNLEMYARQGDWERVIDKLEDVKGKSPEQYNLLISALMNTDLDDAEEVAEEFIASYSKDYRAFHTHANVMGAQASNSIFSALGYAKKAKSSLEQAIAIAPDEIAVYRALMQFHLVAPSIAGGDMDEAKKLAEKIATIDSVEGQFALASFYLKDDNEDQARAIYDALAQNEASALRANFEFGSHYLSSEKYSHAFEALSPLMEMSVATVESKDSAQWHEYEQRESNLLYGKYRLGQVALNSDKFTNTGIAALEQYIDGFNTTNIDTAGLPSVNWAQLRLAELRLNANDIEKAKSTLALINGSEGERFSKILKALKKKIKKRA

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Crispr_ID: NZ_CP018031_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018031_2

3086027-3087459

TypeI-E

I-E

Consensus_repeat	Method
CGGTTCATCCCCGTGGGCACGGGGAACAC	PILER-CR
CGGTTCATCCCCGTGGGCACGGGGAACAC	CRISPRCasFinder
CGGTTCATCCCCGTGGGCACGGGGAACAC	CRT

23 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP018031_2

>merge|NZ_CP018031|2|3086027-3087459|PILER-CR,CRISPRCasFinder,CRT
CGGTTCATCCCCGTGGGCACGGGGAACACTCGTAGGTGGACGTTTCAGAAGAAAAGACTGACGGTTCATCCCCGTGGGCACGGGGAACACACCTGAGGTTTGCCAGGGTTCTCTTTTATCAGCGGTTCATCCCCGTGGGCACGGGGAACACGCCAGCATCACCGTGGACCACTATGAAAGGGGGCGGTTCATCCCCGTGGGCACGGGGAACACCGGTCATCGCATTTAATTGGCTGTTTAAGTTGCGGTTCATCCCCGTGGGCACGGGGAACACGCCGGCCTCCGCCGTTTGTGTCGCTATTAGTCCGGTTCATCCCCGTGGGCACGGGGAACACTTTGTCCAAAACGTCTGCGGTTTTACGTAATTCGGTTCATCCCCGTGGGCACGGGGAACACTTCATGACCGCATTCGCAACACTCAGTTTCACCGGTTCATCCCCGTGGGCACGGGGAACACCATAATGCAAGCCAGTGCAAAATGTCATCCGTCGGTTCATCCCCGTGGGCACGGGGAACACAACATTGTGGAGTGTTAGATGAGCTATAAAGACGGTTCATCCCCGTGGGCACGGGGAACACTGGGTTTCTATCTATATTCACGCCGCACTCTCCGGTTCATCCCCGTGGGCACGGGGAACACGTCTGAGCGAGTCAGGACGAACAAATCTAGTGCGGTTCATCCCCGTGGGCACGGGGAACACTGCAGCGCTGTACCAAAATCAGCCGTTGCAACCGGTTCATCCCCGTGGGCACGGGGAACACTAGCGGGCGCGACGACATTGGCAACACATACACGGTTCATCCCCGTGGGCACGGGGAACACCAAGAATCACCATCGCAGATAACCCACTCGCCCGGTTCATCCCCGTGGGCACGGGGAACACAAACTGTTTACAACGCGCTTTCTATTCTATCACGGTTCATCCCCGTGGGCACGGGGAACACAAAACGAAATGCATGCCCGATTCATGGAATTACGGTTCATCCCCGTGGGCACGGGGAACACTCAAACGCTTGTAATCACTGAAAGCGTTATAGCGGTTCATCCCCGTGGGCACGGGGAACACTAGCTCGTTTATTGGTTTCATTTCTCTAACTCCGGTTCATCCCCGTGGGCACGGGGAACACTTATTTTGTCAACAATGTCAAACTCATGTTCACGGTTCATCCCCGTGGGCACGGGGAACACAAATAACCTATCTAAATCACTCATGCAACCGCCGGTTCATCCCCGTGGGCACGGGGAACACTCTATTGGCGTAGGCGCTGGGTGCGGCTCAAACGGTTCATCCCCGTGGGCACGGGGAACACCAACGTGGTCCGGCGGTGTTGTTATGCAGATCCGGTTCATCCCCGTGGGCACGGGGAACACCCTCATTAATACGCAGCCGTAGTGCTGAAGTACGGTTCATCCCCGTGGGCACGGGGAACAC

>NZ_CP018031|2|1|3086027-3087459|PILER-CR
CGGTTCATCCCCGTGGGCACGGGGAACAC	TCGTAGGTGGACGTTTCAGAAGAAAAGACTGA
CGGTTCATCCCCGTGGGCACGGGGAACAC	ACCTGAGGTTTGCCAGGGTTCTCTTTTATCAG
CGGTTCATCCCCGTGGGCACGGGGAACAC	GCCAGCATCACCGTGGACCACTATGAAAGGGGG
CGGTTCATCCCCGTGGGCACGGGGAACAC	CGGTCATCGCATTTAATTGGCTGTTTAAGTTG
CGGTTCATCCCCGTGGGCACGGGGAACAC	GCCGGCCTCCGCCGTTTGTGTCGCTATTAGTC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TTTGTCCAAAACGTCTGCGGTTTTACGTAATT
CGGTTCATCCCCGTGGGCACGGGGAACAC	TTCATGACCGCATTCGCAACACTCAGTTTCAC
CGGTTCATCCCCGTGGGCACGGGGAACAC	CATAATGCAAGCCAGTGCAAAATGTCATCCGT
CGGTTCATCCCCGTGGGCACGGGGAACAC	AACATTGTGGAGTGTTAGATGAGCTATAAAGA
CGGTTCATCCCCGTGGGCACGGGGAACAC	TGGGTTTCTATCTATATTCACGCCGCACTCTC
CGGTTCATCCCCGTGGGCACGGGGAACAC	GTCTGAGCGAGTCAGGACGAACAAATCTAGTG
CGGTTCATCCCCGTGGGCACGGGGAACAC	TGCAGCGCTGTACCAAAATCAGCCGTTGCAAC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TAGCGGGCGCGACGACATTGGCAACACATACA
CGGTTCATCCCCGTGGGCACGGGGAACAC	CAAGAATCACCATCGCAGATAACCCACTCGCC
CGGTTCATCCCCGTGGGCACGGGGAACAC	AAACTGTTTACAACGCGCTTTCTATTCTATCA
CGGTTCATCCCCGTGGGCACGGGGAACAC	AAAACGAAATGCATGCCCGATTCATGGAATTA
CGGTTCATCCCCGTGGGCACGGGGAACAC	TCAAACGCTTGTAATCACTGAAAGCGTTATAG
CGGTTCATCCCCGTGGGCACGGGGAACAC	TAGCTCGTTTATTGGTTTCATTTCTCTAACTC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TTATTTTGTCAACAATGTCAAACTCATGTTCA
CGGTTCATCCCCGTGGGCACGGGGAACAC	AAATAACCTATCTAAATCACTCATGCAACCGC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TCTATTGGCGTAGGCGCTGGGTGCGGCTCAAA
CGGTTCATCCCCGTGGGCACGGGGAACAC	CAACGTGGTCCGGCGGTGTTGTTATGCAGATC
CGGTTCATCCCCGTGGGCACGGGGAACAC	CCTCATTAATACGCAGCCGTAGTGCTGAAGTA
CGGTTCATCCCCGTGGGCACGGGGAACAC

>NZ_CP018031|2|2|3086027-3087459|CRISPRCasFinder
CGGTTCATCCCCGTGGGCACGGGGAACAC	TCGTAGGTGGACGTTTCAGAAGAAAAGACTGA
CGGTTCATCCCCGTGGGCACGGGGAACAC	ACCTGAGGTTTGCCAGGGTTCTCTTTTATCAG
CGGTTCATCCCCGTGGGCACGGGGAACAC	GCCAGCATCACCGTGGACCACTATGAAAGGGGG
CGGTTCATCCCCGTGGGCACGGGGAACAC	CGGTCATCGCATTTAATTGGCTGTTTAAGTTG
CGGTTCATCCCCGTGGGCACGGGGAACAC	GCCGGCCTCCGCCGTTTGTGTCGCTATTAGTC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TTTGTCCAAAACGTCTGCGGTTTTACGTAATT
CGGTTCATCCCCGTGGGCACGGGGAACAC	TTCATGACCGCATTCGCAACACTCAGTTTCAC
CGGTTCATCCCCGTGGGCACGGGGAACAC	CATAATGCAAGCCAGTGCAAAATGTCATCCGT
CGGTTCATCCCCGTGGGCACGGGGAACAC	AACATTGTGGAGTGTTAGATGAGCTATAAAGA
CGGTTCATCCCCGTGGGCACGGGGAACAC	TGGGTTTCTATCTATATTCACGCCGCACTCTC
CGGTTCATCCCCGTGGGCACGGGGAACAC	GTCTGAGCGAGTCAGGACGAACAAATCTAGTG
CGGTTCATCCCCGTGGGCACGGGGAACAC	TGCAGCGCTGTACCAAAATCAGCCGTTGCAAC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TAGCGGGCGCGACGACATTGGCAACACATACA
CGGTTCATCCCCGTGGGCACGGGGAACAC	CAAGAATCACCATCGCAGATAACCCACTCGCC
CGGTTCATCCCCGTGGGCACGGGGAACAC	AAACTGTTTACAACGCGCTTTCTATTCTATCA
CGGTTCATCCCCGTGGGCACGGGGAACAC	AAAACGAAATGCATGCCCGATTCATGGAATTA
CGGTTCATCCCCGTGGGCACGGGGAACAC	TCAAACGCTTGTAATCACTGAAAGCGTTATAG
CGGTTCATCCCCGTGGGCACGGGGAACAC	TAGCTCGTTTATTGGTTTCATTTCTCTAACTC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TTATTTTGTCAACAATGTCAAACTCATGTTCA
CGGTTCATCCCCGTGGGCACGGGGAACAC	AAATAACCTATCTAAATCACTCATGCAACCGC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TCTATTGGCGTAGGCGCTGGGTGCGGCTCAAA
CGGTTCATCCCCGTGGGCACGGGGAACAC	CAACGTGGTCCGGCGGTGTTGTTATGCAGATC
CGGTTCATCCCCGTGGGCACGGGGAACAC	CCTCATTAATACGCAGCCGTAGTGCTGAAGTA
CGGTTCATCCCCGTGGGCACGGGGAACAC

>NZ_CP018031|2|1|3086027-3087459|CRT
CGGTTCATCCCCGTGGGCACGGGGAACAC	TCGTAGGTGGACGTTTCAGAAGAAAAGACTGA
CGGTTCATCCCCGTGGGCACGGGGAACAC	ACCTGAGGTTTGCCAGGGTTCTCTTTTATCAG
CGGTTCATCCCCGTGGGCACGGGGAACAC	GCCAGCATCACCGTGGACCACTATGAAAGGGGG
CGGTTCATCCCCGTGGGCACGGGGAACAC	CGGTCATCGCATTTAATTGGCTGTTTAAGTTG
CGGTTCATCCCCGTGGGCACGGGGAACAC	GCCGGCCTCCGCCGTTTGTGTCGCTATTAGTC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TTTGTCCAAAACGTCTGCGGTTTTACGTAATT
CGGTTCATCCCCGTGGGCACGGGGAACAC	TTCATGACCGCATTCGCAACACTCAGTTTCAC
CGGTTCATCCCCGTGGGCACGGGGAACAC	CATAATGCAAGCCAGTGCAAAATGTCATCCGT
CGGTTCATCCCCGTGGGCACGGGGAACAC	AACATTGTGGAGTGTTAGATGAGCTATAAAGA
CGGTTCATCCCCGTGGGCACGGGGAACAC	TGGGTTTCTATCTATATTCACGCCGCACTCTC
CGGTTCATCCCCGTGGGCACGGGGAACAC	GTCTGAGCGAGTCAGGACGAACAAATCTAGTG
CGGTTCATCCCCGTGGGCACGGGGAACAC	TGCAGCGCTGTACCAAAATCAGCCGTTGCAAC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TAGCGGGCGCGACGACATTGGCAACACATACA
CGGTTCATCCCCGTGGGCACGGGGAACAC	CAAGAATCACCATCGCAGATAACCCACTCGCC
CGGTTCATCCCCGTGGGCACGGGGAACAC	AAACTGTTTACAACGCGCTTTCTATTCTATCA
CGGTTCATCCCCGTGGGCACGGGGAACAC	AAAACGAAATGCATGCCCGATTCATGGAATTA
CGGTTCATCCCCGTGGGCACGGGGAACAC	TCAAACGCTTGTAATCACTGAAAGCGTTATAG
CGGTTCATCCCCGTGGGCACGGGGAACAC	TAGCTCGTTTATTGGTTTCATTTCTCTAACTC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TTATTTTGTCAACAATGTCAAACTCATGTTCA
CGGTTCATCCCCGTGGGCACGGGGAACAC	AAATAACCTATCTAAATCACTCATGCAACCGC
CGGTTCATCCCCGTGGGCACGGGGAACAC	TCTATTGGCGTAGGCGCTGGGTGCGGCTCAAA
CGGTTCATCCCCGTGGGCACGGGGAACAC	CAACGTGGTCCGGCGGTGTTGTTATGCAGATC
CGGTTCATCCCCGTGGGCACGGGGAACAC	CCTCATTAATACGCAGCCGTAGTGCTGAAGTA
CGGTTCATCCCCGTGGGCACGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018031.1\|WP_071980311.1\|3094271_3097019_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP018031.1\|WP_071980297.1\|3078693_3079878_-\|PQQ-dependent-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|369642
NZ_CP018031.1\|WP_071980300.1\|3082337_3082670_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018031.1\|WP_071980299.1\|3081583_3082336_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018031.1\|WP_071980294.1\|3076853_3077711_+\|serine-protein-kinase-RIO	unknown	unknown	gnl\|CDD\|270696
NZ_CP018031.1\|WP_071980303.1\|3087532_3087835_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP018031.1\|WP_071980310.1\|3092667_3094275_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP018031.1\|WP_071980298.1\|3080195_3081443_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NZ_CP018031.1\|WP_156844077.1\|3083952_3084117_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018031.1\|WP_071980309.1\|3092098_3092668_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	pfam09485_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP018031.1\|WP_071980307.1\|3090273_3091005_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP018031.1\|WP_071980295.1\|3077766_3077988_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018031.1\|WP_071980306.1\|3089605_3090274_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NZ_CP018031.1\|WP_071980301.1\|3083324_3083927_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP018031.1\|WP_071980302.1\|3084416_3085928_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP018031.1\|WP_071980308.1\|3091018_3092053_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP018031.1\|WP_071980305.1\|3088763_3089585_-\|KilA-N-domain-containing-protein	unknown	unknown	gnl\|CDD\|367917
NZ_CP018031.1\|WP_071980304.1\|3087840_3088761_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP018031.1\|WP_071980296.1\|3078096_3078579_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP018031.1\|WP_071980312.1\|3097610_3099497_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018031.1\|WP_071980311.1\|3094271_3097019_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.23933e-137
NZ_CP018031.1\|WP_071980297.1\|3078693_3079878_-\|PQQ-dependent-sugar-dehydrogenase	gnl\|CDD\|369642	pfam07995, GSDH, Glucose / Sorbosone dehydrogenase. Members of this family are glucose/sorbosone dehydrogenases that possess a beta-propeller fold.	4.2337e-155
NZ_CP018031.1\|WP_071980307.1\|3090273_3091005_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	8.92266e-50
NZ_CP018031.1\|WP_071980294.1\|3076853_3077711_+\|serine-protein-kinase-RIO	gnl\|CDD\|270696	cd05145, RIO1_like, Catalytic domain of the atypical protein serine kinases, RIO1 and RIO3 kinases and similar proteins. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. Both RIO1 and RIO3 are associated with precursors of 40S ribosomal subunits, just like RIO2. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and chromosome maintenance. Although depletion of either RIO1 and RIO2 results in similar effects, the two kinases are not fully interchangeable. The specific function of RIO3 is unknown. RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K).	5.14997e-59
NZ_CP018031.1\|WP_071980303.1\|3087532_3087835_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	4.15779e-61
NZ_CP018031.1\|WP_071980304.1\|3087840_3088761_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	5.03164e-148
NZ_CP018031.1\|WP_071980296.1\|3078096_3078579_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.8259e-11
NZ_CP018031.1\|WP_071980310.1\|3092667_3094275_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	4.5483e-158
NZ_CP018031.1\|WP_071980309.1\|3092098_3092668_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.21236e-31
NZ_CP018031.1\|WP_071980306.1\|3089605_3090274_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	4.05213e-67
NZ_CP018031.1\|WP_071980301.1\|3083324_3083927_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	3.32254e-63
NZ_CP018031.1\|WP_071980302.1\|3084416_3085928_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	1.53149e-15
NZ_CP018031.1\|WP_071980308.1\|3091018_3092053_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	6.59014e-119
NZ_CP018031.1\|WP_071980305.1\|3088763_3089585_-\|KilA-N-domain-containing-protein	gnl\|CDD\|367917	pfam04383, KilA-N, KilA-N domain. The amino-terminal module of the D6R/N1R proteins defines a novel, conserved DNA-binding domain (the KilA-N domain) that is found in a wide range of proteins of large bacterial and eukaryotic DNA viruses. The KilA-N domain family also includes the previously defined APSES domain. The KilA-N and APSES domains may also share a common fold with the nucleic acid-binding modules of the LAGLIDADG nucleases and the amino-terminal domains of the tRNA endonuclease.	5.26699e-19
NZ_CP018031.1\|WP_071980298.1\|3080195_3081443_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	3.32834e-157

>NZ_CP018031.1|WP_071980302.1|3084416_3085928_+|Fic-family-protein
MNVSSQKLADSLEQLQLLQESGTVAIQSKQLSRVHRERLLKHGFIREVIRGWYIPAMPDEKPGDSTSWYTSFWGFCGAYLSQRFDNVWCLSPEQSISLHIGDRTVPQQLLVRSPKGNNKPTAFLHNTSVFDVRLNMPAAEYIENLEGLNVYSLAAALVYSSANQFQNAPIQMRTALSMVTDASDVLSVLLAGNHSVIAGRLVGAFRNIGRDLIADNILKGMQAADLKVQEEDPFVEKVQVSFGRRDVSPYVNRMRLMWAQMRESIIAHFPEQPHQTIDIETYMAEVEDKYVTDAYHSLSIEGYRVTRELIELVRSGSWQAEGSDESKRHLDAMAAKGYWNAFQEVKKAVLAVLEGRNAGDVLEQTHSDWYLALFGPSVAAGIIKQSDLAGYRTGPVYIRQSMHTPPSREAVRDMMPTLFDLLAEEENAAVRVVLGHFIFVYIHPYFDGNGRMGRFIMNLMMASGGYPWTIVPVTRRDEYMKALEAASVKQDIVPFTKFLASLI
>NZ_CP018031.1|WP_156844077.1|3083952_3084117_+|hypothetical-protein
MPVLFSSAQEMLTNNMPTDEAPNVGIGFSLNKDDNGEILGFGHSGADAGFMSQL
>NZ_CP018031.1|WP_071980301.1|3083324_3083927_+|amino-acid-transporter
MSFSVFLAGFSLGISLILAIGAQNAFVLKQGLKQQHVFLVCLICALSDAILITLGVAGFGVVVQKYPFIEQLARYLGAAFLFFYSALSFKSALTTDHALQAQGKEVGSLLAATLTCLAFTWLNPHVYLDTIILLGSISTQYEGQQVAFGLGAIFGSFVFFFSLGYGAKLLIPVFKKPKAWKVLEFIIGFVMAALGVSLLV
>NZ_CP018031.1|WP_071980300.1|3082337_3082670_-|hypothetical-protein
METKLPIYKKLLVMFRIEPGCLGPQGADYVEEFCIFAKQKLKNHHGHCLRWSIKPRYDKSLPELEFQIKNSVVSRENAAKYMDRFDIDIDTFEEGLEESLADFIDAFFER
>NZ_CP018031.1|WP_071980299.1|3081583_3082336_+|hypothetical-protein
MNNITRYGTTLVTTVLLFACNSDSNNILEDLNANRAKWESANIDNYQFEYSISCFCLDDATRPRLVVVNADQVESQTIIESNIALPQDTFTSETIDGLFERIALEESRAESLNVEYHPELGHPTFIQVDGNAQTADDEYTITVSNVVSADDIACTTSIESGLIVSITDASTEAPIACDTTVTATDENFTETATGACDRNELITMLDERPGFYSITVEKDGYQTFQVDDYGIGKDLCHVLPRELEVELISE
>NZ_CP018031.1|WP_071980298.1|3080195_3081443_+|DEAD/DEAH-box-helicase
MPFSDLGLCTELLNTITDKGYVEPSSIQSKAIPVVLSQRDLIAIAQTGTGKTASFSLPILQRLVDMQRADAHCVKALIIAPTRELAAQVAANVATYGRNMNIRSTAVFGGVRIEPQKYELEQGVDILIATPGRLVDLYQQGAINFDHVEILVLDEADRMLDLGFIDHIHSIQNLLPKKRQTLLFSATFSKEIKALAATMVKTPITIELTTARDHIENITQVLHPVDKERKHELLIHLLNNNDWSQILVFTRTKRGADELRNELEALGIAAESIHANRTQQARTLALDGFRNGSLKVLIGTDLAARGIDIQQLPCVINIDLPYVPEDYIHRIGRTGRASSSGLAISLYSDDEAKQLRAIERMLGRQFKKTFISEFTPKPKPPEIKKDQKTDDLYGNFEAFDKPKGKGKSKGRRKRR
>NZ_CP018031.1|WP_071980297.1|3078693_3079878_-|PQQ-dependent-sugar-dehydrogenase
MLIKLKPQKRIKQKVALLATLLATSFAALAQSTEQVEISGSEGKALVGEVLSSFDNPWAMTFLPDGHSLVTEKPGTMWLLDKNQQKRFSVSNVPSVTARGQGGLGDVIIHPEFATNSTIYVSYVERDPKDDKFSGAVIERATLTITDKGASLSNRELIWRQSPKVTGNGHYSHRMAISPDGYLFISSGERQKFTPAQNMAMNLGKIVRLNDDGSVPEDNPFYGNGSVTEQIWTLGHRNPLGIDFDAEGNLWAHEMGPRHGDELNIIERGRNYGYPTVSQGDHYSGVKIPNHEDIPIFKSPEKAWVPAISPAGFIIYKGDKFGDWTGNGFIGGLSSKALVRVAIDKDEEGKWNVEEAERYEWGKRVREVEQDNMGNIYVLEDKEGGRLIKLQHSN
>NZ_CP018031.1|WP_071980296.1|3078096_3078579_-|GNAT-family-N-acetyltransferase
MEIREASIQDFDLIWPIFHEVAKAGETYAFRTDTTKEEALNIWVKTPLKTFLFENNGEMLGTYYLKTNQAGPGQHVCNCGYMVAESARGKGLATAMCEHSQKVAKELGYKAMQFNFVASTNEGAVRLWQKLGYDIVGRLPNAFNHPTKSYVDALVMYKWL
>NZ_CP018031.1|WP_071980295.1|3077766_3077988_-|hypothetical-protein
MTSDTQDSNQDDQTIGNFAAVKTSIANGDVDEVKARLDGKSIKPLEKGYLIDIAKLSGNSEILKVIEATPESE
>NZ_CP018031.1|WP_071980294.1|3076853_3077711_+|serine-protein-kinase-RIO
MKIPKRLQPLVDDGLIDEVISRLMSGKEADVFIVRCGEHVRCAKVYKDAVKRSFKKAAQYQEGRKVRGGRQARAMGKRSSYGRQLEEEIWQTAEVDALSRLNEAGVRVPDTYCCVDGVLLMELVSDENGDVAPQLGHVSMSKEEALKQHKEMMHNIMLMLCAGIIHGDLSEFNVLVDDKGPVIIDLPQAVNAAANNSAEAMFARDVNNMRRYYGEFAPELLHTNYAKEMWALFEEGNLTPNSVLTGEFEDDEESADVNAILDEIQAAEDEEKERLARINFSDDAE
>NZ_CP018031.1|WP_071980303.1|3087532_3087835_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MTMLTVVTEAVPPRLRGRLAVWLLEVRAGVYVGNVSRRVREMIWFQITELADEGNAVMAWATNNESGFEFQTFGENRREPIDVDGLRLVRFLPIDSDQNS
>NZ_CP018031.1|WP_071980304.1|3087840_3088761_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MAFIPLKPIPVKDRNSMIFVGMGRIDVKDGAFVVIDEVNGERMHIPVGSVVCIMLEPGTRVSHAAVKLAAQVGTLLIWVGEAGVRLYAAGQPGGARSDKLLYQAKLALDENLRLKVVRKMFELRFGEPAPERRSVDQLRGIEGARVRKTYELLAKQYGAEWRGRKYDPKDWGKGDVVNQCISAATSCLYGVTEAAILAAGYAPAIGFIHSGKPLSFVYDMADIVKFESVVPEAFKIASKRPRSPDREVRVACRNIFRETKLLNRLIPLIEDVLSAGEITPPEPPRDSQPPAIPEPRNIGNEGHRTG
>NZ_CP018031.1|WP_071980305.1|3088763_3089585_-|KilA-N-domain-containing-protein
MKPKLQVLEQTIATMTKEDVEYICITDIAKYKNSTRSDDLIRNWLRNRNTIEFLGIWEQLNNAGFNPVEFNGFKKEAGLNSFTLTPKQWIEKTNAIGIVSKAGRYGGTFAQKDIAFEFASWISVEFKLYLIKEFQRLKEQEFEQLGWDIRRNLAKVNYLIHTDAVKEQLIPETLNNQQIACVYATEADLLNVALFGVTAKQWRDKNPSLSGNMRDHANIHQLVCLANMESMNAHFIHQGIKQSERIVKLNQLAIQQMQVLIAANTSKNPLLKE
>NZ_CP018031.1|WP_071980306.1|3089605_3090274_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MFLSKVTMISSPQTAQELAKLQRNGVYASHQLIWQLFSSDTERSFLYREEMGATGMPEFYVLSKTEPQAISPIFSCLTKVFEPKLDKGQKLSFKLRVNPTVCVKGVDGKQRRHDVMMQAKYNVKDELSDVKSLKMHMEKAAISWLNNEKRLDEWGITLDFQPTIDGYTQHKVQKKRHQIQFSSVDYQGMLTVQDPLKFINQYAKGFGRAKGMGCGLMMIKRA
>NZ_CP018031.1|WP_071980307.1|3090273_3091005_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFRLYGPMASWGVPAVGGDRATAIAPTRSALLGLLGAAMGITRDNEAKLEALQQSVSFGVKQCVPSSILRDYHTAQVPSEKRGISHLTRKSELSEAKLNTVLSSRDYRCDGIWIVAVWSRAKSQVTLSAIKHALEKPVFPLYLGRKSCPLGLPLSPKTFETETLQQALDTDFPPVVSEQSDKYWFGANGFVTYFWEGAATAFDDELTQSYQPWDEPVHRGRWQFKQRTIHQLTLREAK
>NZ_CP018031.1|WP_071980308.1|3091018_3092053_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSKFIQLHLLTSYAPSNLNRDDLGRPKTAKMGGFDRLRVSSQSLKRNWRVSELFEEAMSGEIGIRTKKLGEEVFNTLVAGGVKEKQATSWASSIAGVFGKVKKDKPLEIEQLAHISTAEKEAVLALADLLCKEQREPTVDELKLLKADRTSVDIALFGRMLASSPEFNVEAACQVAHSISVHKVLVEDDYFTAVDDLNDGKTDTGSAHIGEANFAAALFYSYICINKSQLIENLGGNEALADSAIKALTEAAVKVSPKGKQNSFASRAYASYVMAEVGEQQPRSLSVAYLRPVHDDMADAAITAIEKQAANFDAVYGKCADARYTINAVKGEGTLIELLEFVAK
>NZ_CP018031.1|WP_071980309.1|3092098_3092668_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNKELLQRGVSTALRWWKSMYASASELKKEGIQAAPTAWKAELKRAESIDAVLLSQGFRALWLSLSSDITEGSDKQVSENMLCWAAVAGALVFVSDNHTESFAKLAGRKGDGDKPVVSELRFAQLQQAQAPEEFLRRIRRILKQLKGKASVTQLAKDTCCWYQELTSNYPREADKRIAVRWAMDYYQAN
>NZ_CP018031.1|WP_071980310.1|3092667_3094275_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLKDPWLIFKVQQPDGSLIEQTLPITAIAKPEVIDFALPRADFQGAAYQFTIGLLQTCFAPDDEFEWKDNYLEPPTAEVLKQAFSKAEHAFNATGDGPLFMQDYDSLDEAKRNSVSSLLIEAPGGNGLKLNTDHFVKRGIGEVMSLPMAVLALFTLQINAPAGGQGNRTGLRGGGPLTTLVMPQNENSPLWQKLWLNVAPNDERYSAPDLHCDTVFPWLGKTRVSAKKGSETYQKDVHPLHMFWAMPRRIRLIVEDVAGECSLTGKSCSQLVKLYKTQNYGANYAGSWSHPLTPYKRDLKKPDQEDLSIKGQPGGITYKIWDVLTLTGSPDGGKTQQMCASVVRSFNHVVNDDILEDVTAQARLWVFGYDMDNMKARGWYSETMPLYQVPPAKQQNILDYIKQLQTIANDALWHCRSQIKSAWFDKPGDAKGDFSFIETAFWQQTQSAFFAAVQQLMSSDFLYLTSMEAKQWLSTLRNVALSLFDEYALSELGSERTMEKRIGARKNLLKGLYSKSFKKFETEHQIEPNKETN
>NZ_CP018031.1|WP_071980311.1|3094271_3097019_-|CRISPR-associated-helicase/endonuclease-Cas3
MDKELPPYFRYWGKAKKDSEQSGADYHLLPYHCLDVAAVCYEWLDTDTKLAGELSDYLAIPRDQFTSLMSFFMAMHDLGKFASAFQALYSSGSSKLILPNSRKSYDGSHYRHDRLGTWFWRKLRKQICERCTAGYGLNRRQQSYLAKPLNIIMDCMLGHHGVPVELDEPGIEGFTESQNLTASEAFTADLIVLFQPELTEIIYQNDTEWLAKLKQVSWHIAGIAVLCDWIGSDQADFPYVSGEMSLDTYWQRTRLQAKKALESKQLIRSFNVAPFFSVENSFGFKPTPLQSWAEKVEITDAPQLFILEDVTGAGKTEAALTLIHRLMQKGVASGFYFGLPTMATSNAMYKRVTEHYLSMYESEAEKPSIVLAHGAREMNPLFQQTVITSGEDNSEYNGEDKTAIAECHCWLADSRKKALMAPVGVGTIDQALLAVLPKRHQSLRLLGLHNKVLIFDEVHAADEYMFELLEALLKLHFHQGGSVILLTATLPLKQRKKLVEIWQASAGNAVKPPTRTGLNDFPLATHVTPELDNPVREEVLFSREEVSRAVTVTFLHDEANCIERIINATESGNCVVWVRNSVDDALAAYSTLSARMSNPDDCILFHSRFTLDDRNTIEAKVLKVFGKHSEADTRSGKVLVATQVFQESLDADCDLMISDICPIDDLIQRTGRLHRHSRDMQGKFTPGEPDQREQPELIIHAPQWSDNPNEDWVRKDFRNTSYVYPSAGRLWLGMRELLKLGTMCMPEDARQLIEAVYSDEGREQIPASLIAQEQRVLGNERARENQAFARKLNWELGYQITSRGRWEEDEVEINTRLSEREEVQIVLLQVDAQERLTFWCEHKQHAIQLSTLKLAKNKYADNLSPVPEKYQEQLDKLIAKYPVLQFKQCWIPENDERFGYSPGSGFYQKIIKEEL
>NZ_CP018031.1|WP_071980312.1|3097610_3099497_-|hypothetical-protein
MKVSEGIPTATLLKRMGFNNEKALAKYVNTVLTSKENYSKYIVEETGERRGRPEKFLVTPEAKTIVQNIALLQPYSGLFGRSKDASIFAPKVKLQSKKSGEHLRKAAIRIKERLSDDILRSQQTLECLGSVTSAIINNLPIDIEKDSIEDMIQKAEPISLSNFSNSYLIGQWNDIVELRHRISGGEHSSHVYRLLGEKLFLMGDIDGAKDVLHTALEVEHDNGVANALLALIYNRELLENRREQYQLYARTELSGTIESPVTSEEHWINDNLEYASSVGEELKKEFIHYATLALEHWPEHEYRREGRKNFLLNLSHSHDCNVSLSRWELFMQLIKYIGKNEWDENREALSRIVPAFVESSDYGFHTKLGSDLSTDEKVRLLNVVYFYSPSTAKNHLAQLSKALDSGLPLAPDSDYEYFVNIFTKALFIEYFGDDAYDRLISRLLDAKHEHERLALFSSRASRKFEKLRLSLSSIEKIGYDISKPLNFDQFFLSESEDLQDEEGIRELERQLPIMLEHVRGWKEIANDELWWNFKGTSWESYETRTLILSACLIELASGENTEENSERLYQILQEPQTKSSLTSIPERFLDTISSFITNSMNENKELLAIIKTLRSITEEAYSDHDALL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018031_2	2.12\|3086728\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3086728-3086759	32	NZ_AP017309	Leptolyngbya sp. NIES-3755 plasmid plasmid1 DNA, complete genome	164700-164731	6	0.812
NZ_CP018031_2	2.22\|3087338\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3087338-3087369	32	MG757156	Mycobacterium phage Cuke, complete genome	7497-7528	6	0.812
NZ_CP018031_2	2.1\|3086056\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3086056-3086087	32	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	279698-279729	8	0.75
NZ_CP018031_2	2.15\|3086911\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3086911-3086942	32	MN334766	Serratia phage PCH45, complete genome	116962-116993	8	0.75
NZ_CP018031_2	2.18\|3087094\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3087094-3087125	32	NZ_MF150536	Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03P plasmid pLd8, complete sequence	31751-31782	8	0.75
NZ_CP018031_2	2.18\|3087094\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3087094-3087125	32	MH616645	Microviridae sp. isolate ctha547, complete genome	4596-4627	8	0.75
NZ_CP018031_2	2.18\|3087094\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3087094-3087125	32	MN694502	Marine virus AFVG_250M1097, complete genome	35710-35741	8	0.75
NZ_CP018031_2	2.13\|3086789\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3086789-3086820	32	MK814757	Gordonia phage Fairfaxidum, complete genome	13342-13373	9	0.719
NZ_CP018031_2	2.18\|3087094\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3087094-3087125	32	MG592575	Vibrio phage 1.205.O._10N.222.51.A7, partial genome	36093-36124	9	0.719
NZ_CP018031_2	2.20\|3087216\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3087216-3087247	32	MN693504	Marine virus AFVG_25M410, complete genome	9895-9926	9	0.719
NZ_CP018031_2	2.23\|3087399\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3087399-3087430	32	NC_018696	Paraburkholderia phenoliruptrix BR3459a plasmid pSYMBR3459, complete sequence	333119-333150	9	0.719
NZ_CP018031_2	2.21\|3087277\|32\|NZ_CP018031\|PILER-CR,CRISPRCasFinder,CRT	3087277-3087308	32	NZ_CP041653	Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence	26103-26134	11	0.656

1. spacer 2.12|3086728|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017309 (Leptolyngbya sp. NIES-3755 plasmid plasmid1 DNA, complete genome) position: , mismatch: 6, identity: 0.812

tgcagcgctgtaccaaaatcag-ccgttgcaac	CRISPR spacer
ggcagccctgtatcaaaatcagcccgttgtca-	Protospacer
 ***** *****.********* ******. *

2. spacer 2.22|3087338|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to MG757156 (Mycobacterium phage Cuke, complete genome) position: , mismatch: 6, identity: 0.812

--caacgtggtccggcggtgttgttatgcagatc	CRISPR spacer
gtcagcgcg--ccggtggtgttgtcatgcagatc	Protospacer
  **.**.*  ****.********.*********

3. spacer 2.1|3086056|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 8, identity: 0.75

-tcgtaggtggacgtttcagaagaaaagactga	CRISPR spacer
cgcccaggcgag-gtttcaggagaaaagactga	Protospacer
  * .***.*.. *******.************

4. spacer 2.15|3086911|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to MN334766 (Serratia phage PCH45, complete genome) position: , mismatch: 8, identity: 0.75

aaactgtttacaacgcgctttctattctatca	CRISPR spacer
tatccgtttacaacgagctttttattctgcaa	Protospacer
 * *.********** *****.******.. *

5. spacer 2.18|3087094|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF150536 (Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03P plasmid pLd8, complete sequence) position: , mismatch: 8, identity: 0.75

tagctcgtttattggtttcatttctctaactc	CRISPR spacer
aagttcgattattggtttcatttcccataatg	Protospacer
 **.*** ****************.*  * *

6. spacer 2.18|3087094|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to MH616645 (Microviridae sp. isolate ctha547, complete genome) position: , mismatch: 8, identity: 0.75

tagctcgtttattggtttcatttctctaactc	CRISPR spacer
tagttcgtatattggtttcattttgaaacctt	Protospacer
***.**** **************.   * **.

7. spacer 2.18|3087094|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to MN694502 (Marine virus AFVG_250M1097, complete genome) position: , mismatch: 8, identity: 0.75

tagctcgtttattggtttcatttctctaactc	CRISPR spacer
catttcttttattggtttcatttttcttattt	Protospacer
.* .** ****************.*** *.*.

8. spacer 2.13|3086789|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to MK814757 (Gordonia phage Fairfaxidum, complete genome) position: , mismatch: 9, identity: 0.719

tagcgggcgcgacgacattggcaacacataca	CRISPR spacer
acgcgggctcgacgtcattggcaacgccgtga	Protospacer
  ****** ***** **********.*    *

9. spacer 2.18|3087094|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to MG592575 (Vibrio phage 1.205.O._10N.222.51.A7, partial genome) position: , mismatch: 9, identity: 0.719

tagctcgtttattggtttcatttctctaactc	CRISPR spacer
taagcagtctattggttttatttctctaagca	Protospacer
**. . **.*********.********** .

10. spacer 2.20|3087216|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to MN693504 (Marine virus AFVG_25M410, complete genome) position: , mismatch: 9, identity: 0.719

aaataacctatctaaatcactcatgcaaccgc	CRISPR spacer
taataaactatctaaatcacttattaaatttt	Protospacer
 ***** **************.**  **.. .

11. spacer 2.23|3087399|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to NC_018696 (Paraburkholderia phenoliruptrix BR3459a plasmid pSYMBR3459, complete sequence) position: , mismatch: 9, identity: 0.719

cctcattaatacgcagccgtagtgctgaagta	CRISPR spacer
ggtggcgcatacgcagccgtagtgctgacgtt	Protospacer
  * ..  ******************** **

12. spacer 2.21|3087277|32|NZ_CP018031|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041653 (Streptomyces sp. RLB1-9 plasmid pRLB1-9.1, complete sequence) position: , mismatch: 11, identity: 0.656

tctattggcgtaggcgctgggtgcggctcaaa	CRISPR spacer
cgatccggcctaggcgctgggtgcgggtctcg	Protospacer
.   ..*** **************** **  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

311491 : 368337

Bacillus_phage(50.0%)

integrase,transposase,protease

attL 351734:351747|attR 364538:364551

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071978364.1\|311491_312589_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_071978365.1\|314266_314611_-	hypothetical protein	NA	NA	NA	NA
WP_071978366.1\|314683_315454_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_071978367.1\|315530_315767_-	hypothetical protein	NA	NA	NA	NA
WP_071978368.1\|316084_316468_+	hypothetical protein	NA	NA	NA	NA
WP_081334059.1\|316559_318062_-\|transposase	transposase	NA	NA	NA	NA
WP_024024474.1\|318406_319150_+	hypothetical protein	NA	NA	NA	NA
WP_024024473.1\|319676_320093_-	BLUF domain-containing protein	NA	NA	NA	NA
WP_071978369.1\|320200_320926_+	hypothetical protein	NA	NA	NA	NA
WP_071978371.1\|321121_322624_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.3e-17	34.2
WP_071978372.1\|322668_323511_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7QWV1	Vibrio_phage	2.7e-33	35.4
WP_071978373.1\|323633_324182_+	SecY-interacting protein	NA	NA	NA	NA
WP_071978374.1\|324178_324463_-	hypothetical protein	NA	NA	NA	NA
WP_020745469.1\|324678_325041_+	DUF3192 domain-containing protein	NA	NA	NA	NA
WP_020745470.1\|325406_326045_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_071978375.1\|326172_327501_+	PAS domain S-box protein	Q8QNA2	Ectocarpus_siliculosus_virus	1.3e-05	23.0
WP_071978376.1\|327493_328489_+	HupU protein	NA	NA	NA	NA
WP_020745474.1\|328521_329973_+	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA
WP_071978377.1\|329972_332276_+	carbamoyltransferase HypF	NA	NA	NA	NA
WP_020745478.1\|332619_333696_+	hydrogenase small subunit	NA	NA	NA	NA
WP_020745479.1\|333695_335504_+	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA
WP_071978378.1\|335539_336298_+	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA
WP_020745481.1\|336385_336691_+	HigA family addiction module antidote protein	NA	NA	NA	NA
WP_071981095.1\|336889_337516_+	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA
WP_020745483.1\|337515_337824_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_020745484.1\|337843_338275_+	hydrogenase expression/formation protein HoxO	NA	NA	NA	NA
WP_071978379.1\|338284_339148_+	hydrogenase expression/formation protein	NA	NA	NA	NA
WP_071978380.1\|339157_339379_+	rubredoxin	NA	NA	NA	NA
WP_071978381.1\|339381_339954_+	[NiFe]-hydrogenase assembly chaperone HybE	NA	NA	NA	NA
WP_071978382.1\|339950_341099_+	hypothetical protein	NA	NA	NA	NA
WP_071981096.1\|341100_341433_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_071978383.1\|341435_342458_+	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA
WP_020745491.1\|342457_343933_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_020745492.1\|343946_344228_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_020745493.1\|344233_344938_+	SIS domain-containing protein	NA	NA	NA	NA
WP_020745494.1\|344937_346065_+	hydrogenase formation protein HypD	NA	NA	NA	NA
WP_020745495.1\|346082_347129_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA
WP_146129513.1\|347147_347546_-	hypothetical protein	NA	NA	NA	NA
WP_071978384.1\|347802_348384_-	HupE/UreJ family protein	NA	NA	NA	NA
WP_020745498.1\|348697_349117_-	hypothetical protein	NA	NA	NA	NA
WP_071978385.1\|349775_350345_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_156844020.1\|351117_352227_+	hypothetical protein	NA	NA	NA	NA
351734:351747	attL	NA	NA	NA	NA
WP_071978387.1\|352268_355331_-\|transposase	Tn3 family transposase	A0A125RQ78	Bacillus_phage	7.6e-25	24.5
WP_071981097.1\|355377_356220_-\|protease	zinc metalloprotease	NA	NA	NA	NA
WP_156844021.1\|356537_357542_-	hypothetical protein	NA	NA	NA	NA
WP_071978389.1\|357944_358451_-	hypothetical protein	NA	NA	NA	NA
WP_071978390.1\|358556_358784_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_071978391.1\|358802_359732_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_071978392.1\|359908_360169_+	hypothetical protein	NA	NA	NA	NA
WP_071978393.1\|360307_360631_+	hypothetical protein	NA	NA	NA	NA
WP_071978394.1\|360698_360923_+	hypothetical protein	NA	NA	NA	NA
WP_071978395.1\|361536_363768_-	catalase/peroxidase HPI	NA	NA	NA	NA
WP_071978396.1\|364119_366378_+	catalase/peroxidase HPI	NA	NA	NA	NA
364538:364551	attR	NA	NA	NA	NA
WP_071981098.1\|366729_368337_+\|transposase	IS1634 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018031

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection