CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP018113	Escherichia coli strain MRSN346595 plasmid pMRSN346595_62.2, complete sequence	0 crisprs	NA	0	0
NZ_CP018109	Escherichia coli strain MRSN346595 chromosome, complete genome	5 crisprs	DinG,cas3,c2c9_V-U4,DEDDh,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	10	9
NZ_CP018111	Escherichia coli strain MRSN346595 plasmid pMRSN346595_67.9, complete sequence	0 crisprs	NA	0	1
NZ_CP018114	Escherichia coli strain MRSN346595 plasmid pMRSN346595_5.3, complete sequence	0 crisprs	NA	0	0
NZ_CP018110	Escherichia coli strain MRSN346595 plasmid pMRSN346595_120.3, complete sequence	0 crisprs	DEDDh,csa3,cas14j	0	1
NZ_CP018112	Escherichia coli strain MRSN346595 plasmid pMRSN346595_64.5, complete sequence	0 crisprs	c2c9_V-U4	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

50697 : 61313

Escherichia_phage(71.43%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077253135.1\|50697_51714_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	1.7e-186	99.7
WP_001513659.1\|51941_52259_+	hypothetical protein	NA	NA	NA	NA
WP_038989268.1\|52533_53610_-\|transposase	IS110-like element ISEc21 family transposase	NA	NA	NA	NA
WP_001513660.1\|53919_54279_-	hypothetical protein	A0A077SLM1	Escherichia_phage	5.0e-45	98.9
WP_001513661.1\|54306_54486_-	hypothetical protein	Q71TH5	Escherichia_phage	3.5e-23	96.6
WP_001216034.1\|54490_54871_-	type II toxin-antitoxin system death-on-curing family toxin	A0A077SK56	Escherichia_phage	1.1e-63	100.0
WP_001190712.1\|54870_55092_-	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_047633096.1\|55274_56831_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.1e-104	42.9
WP_001293038.1\|56827_58075_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_071940817.1\|58196_61313_+	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	4.9e-27	24.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP018109

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018109_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018109_1

468474-468618

Orphan

Consensus_repeat	Method
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018109_1

>merge|NZ_CP018109|1|468474-468618|CRISPRCasFinder
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAA

>NZ_CP018109|1|1|468474-468618|CRISPRCasFinder
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	GGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCG
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018109.1\|WP_001219309.1\|467541_468450_+\|fructokinase	unknown	unknown	gnl\|CDD\|236565
NZ_CP018109.1\|WP_001326926.1\|468694_469879_-\|MFS-transporter-AraJ	unknown	unknown	gnl\|CDD\|182234
NZ_CP018109.1\|WP_001221319.1\|473147_474350_-\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_CP018109.1\|WP_000893623.1\|475286_476582_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|182895
NZ_CP018109.1\|WP_001298537.1\|466505_467417_-\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|225521
NZ_CP018109.1\|WP_000941942.1\|465574_465859_+\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
NZ_CP018109.1\|WP_001142439.1\|464376_464568_+\|protein-YaiA	unknown	unknown	gnl\|CDD\|182421
NZ_CP018109.1\|WP_001009885.1\|481734_482316_-\|ACP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182207
NZ_CP018109.1\|WP_001310597.1\|479912_481730_+\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
NZ_CP018109.1\|WP_001266503.1\|482408_483479_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP018109.1\|WP_001276420.1\|464825_465503_+\|AroM-family-protein	unknown	unknown	gnl\|CDD\|182491
NZ_CP018109.1\|WP_000698951.1\|470004_473151_-\|exonuclease-subunit-SbcC	unknown	unknown	gnl\|CDD\|182330
NZ_CP018109.1\|WP_000149639.1\|476988_478308_+\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	unknown	unknown	gnl\|CDD\|185331
NZ_CP018109.1\|WP_000193393.1\|463802_464327_+\|shikimate-kinase-AroL	unknown	unknown	gnl\|CDD\|235153
NZ_CP018109.1\|WP_000113933.1\|474539_475229_+\|phosphate-response-regulator-transcription-factor-PhoB	unknown	unknown	gnl\|CDD\|182277
NZ_CP018109.1\|WP_120795376.1\|466344_466428_+\|protein-YkiD	unknown	unknown	unknown
NZ_CP018109.1\|WP_000158159.1\|463161_463620_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP018109.1\|WP_023150062.1\|461100_462216_+\|diguanylate-cyclase-AdrA	unknown	unknown	gnl\|CDD\|182329
NZ_CP018109.1\|WP_001295331.1\|462232_463042_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP018109.1\|WP_001295329.1\|478383_479757_+\|proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566

Protein	Function_ID	Function_description	E-value
NZ_CP018109.1\|WP_001219309.1\|467541_468450_+\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
NZ_CP018109.1\|WP_001326926.1\|468694_469879_-\|MFS-transporter-AraJ	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	0
NZ_CP018109.1\|WP_001221319.1\|473147_474350_-\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NZ_CP018109.1\|WP_000893623.1\|475286_476582_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
NZ_CP018109.1\|WP_001298537.1\|466505_467417_-\|recombination-associated-protein-RdgC	gnl\|CDD\|225521	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair].	0
NZ_CP018109.1\|WP_000698951.1\|470004_473151_-\|exonuclease-subunit-SbcC	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
NZ_CP018109.1\|WP_001142439.1\|464376_464568_+\|protein-YaiA	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	5.14477e-31
NZ_CP018109.1\|WP_000941942.1\|465574_465859_+\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.85948e-64
NZ_CP018109.1\|WP_001310597.1\|479912_481730_+\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
NZ_CP018109.1\|WP_001266503.1\|482408_483479_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP018109.1\|WP_001276420.1\|464825_465503_+\|AroM-family-protein	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	2.13662e-120
NZ_CP018109.1\|WP_000149639.1\|476988_478308_+\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0
NZ_CP018109.1\|WP_000193393.1\|463802_464327_+\|shikimate-kinase-AroL	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.43812e-108
NZ_CP018109.1\|WP_000113933.1\|474539_475229_+\|phosphate-response-regulator-transcription-factor-PhoB	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	5.1688e-159
NZ_CP018109.1\|WP_001009885.1\|481734_482316_-\|ACP-phosphodiesterase	gnl\|CDD\|182207	PRK10045, PRK10045, ACP phosphodiesterase.	3.03368e-136
NZ_CP018109.1\|WP_000158159.1\|463161_463620_+\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	2.50663e-80
NZ_CP018109.1\|WP_023150062.1\|461100_462216_+\|diguanylate-cyclase-AdrA	gnl\|CDD\|182329	PRK10245, adrA, diguanylate cyclase AdrA; Provisional.	0
NZ_CP018109.1\|WP_001295331.1\|462232_463042_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.87564e-128
NZ_CP018109.1\|WP_001295329.1\|478383_479757_+\|proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0

>NZ_CP018109.1|WP_001219309.1|467541_468450_+|fructokinase
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>NZ_CP018109.1|WP_001298537.1|466505_467417_-|recombination-associated-protein-RdgC
MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR
>NZ_CP018109.1|WP_120795376.1|466344_466428_+|protein-YkiD
MTQRPWSKLQRKTHNIAALKIIARRSE
>NZ_CP018109.1|WP_000941942.1|465574_465859_+|pyrimidine/purine-nucleoside-phosphorylase
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>NZ_CP018109.1|WP_001276420.1|464825_465503_+|AroM-family-protein
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>NZ_CP018109.1|WP_001142439.1|464376_464568_+|protein-YaiA
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE
>NZ_CP018109.1|WP_000193393.1|463802_464327_+|shikimate-kinase-AroL
MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>NZ_CP018109.1|WP_000158159.1|463161_463620_+|YaiI/YqxD-family-protein
MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG
>NZ_CP018109.1|WP_001295331.1|462232_463042_-|pyrroline-5-carboxylate-reductase
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS
>NZ_CP018109.1|WP_023150062.1|461100_462216_+|diguanylate-cyclase-AdrA
MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITTMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA
>NZ_CP018109.1|WP_001326926.1|468694_469879_-|MFS-transporter-AraJ
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG
>NZ_CP018109.1|WP_000698951.1|470004_473151_-|exonuclease-subunit-SbcC
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK
>NZ_CP018109.1|WP_001221319.1|473147_474350_-|exonuclease-subunit-SbcD
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>NZ_CP018109.1|WP_000113933.1|474539_475229_+|phosphate-response-regulator-transcription-factor-PhoB
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>NZ_CP018109.1|WP_000893623.1|475286_476582_+|phosphate-regulon-sensor-histidine-kinase-PhoR
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD
>NZ_CP018109.1|WP_000149639.1|476988_478308_+|branched-chain-amino-acid-transporter-carrier-protein-BrnQ
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH
>NZ_CP018109.1|WP_001295329.1|478383_479757_+|proline-specific-permease-ProY
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>NZ_CP018109.1|WP_001310597.1|479912_481730_+|maltodextrin-glucosidase
MMLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN
>NZ_CP018109.1|WP_001009885.1|481734_482316_-|ACP-phosphodiesterase
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL
>NZ_CP018109.1|WP_001266503.1|482408_483479_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE

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Crispr_ID: NZ_CP018109_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018109_2

608663-608759

Orphan

Consensus_repeat	Method
GCTTGACGCGTCTTATCAGGCCTACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018109_2

>merge|NZ_CP018109|2|608663-608759|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAACCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGATGCTTGACGCATCTTATCAGGCCTACAA

>NZ_CP018109|2|2|608663-608759|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAA	CCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGAT
GCTTGACGCATCTTATCAGGCCTACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018109.1\|WP_001295318.1\|609887_610397_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP018109.1\|WP_000988364.1\|616270_616963_+\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP018109.1\|WP_000255997.1\|611239_611734_-\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP018109.1\|WP_000190288.1\|613957_614170_-\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP018109.1\|WP_000580822.1\|603976_605644_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP018109.1\|WP_000495367.1\|605653_606913_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NZ_CP018109.1\|WP_000006900.1\|596443_597805_+\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP018109.1\|WP_000855378.1\|607735_608629_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP018109.1\|WP_000703900.1\|602610_603660_-\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP018109.1\|WP_001310618.1\|601353_602589_-\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NZ_CP018109.1\|WP_001143556.1\|613328_613850_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP018109.1\|WP_001333621.1\|599184_600330_+\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NZ_CP018109.1\|WP_000776555.1\|615508_616051_+\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NZ_CP018109.1\|WP_000729160.1\|614171_615038_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP018109.1\|WP_000912385.1\|611907_613293_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP018109.1\|WP_001302767.1\|597861_599163_+\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP018109.1\|WP_000540997.1\|600557_601343_-\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
NZ_CP018109.1\|WP_000212247.1\|610514_611237_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP018109.1\|WP_000152519.1\|606923_607739_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
NZ_CP018109.1\|WP_000815571.1\|608823_609891_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674

Protein	Function_ID	Function_description	E-value
NZ_CP018109.1\|WP_001295318.1\|609887_610397_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NZ_CP018109.1\|WP_000988364.1\|616270_616963_+\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	4.4332e-149
NZ_CP018109.1\|WP_000255997.1\|611239_611734_-\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
NZ_CP018109.1\|WP_000190288.1\|613957_614170_-\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NZ_CP018109.1\|WP_000580822.1\|603976_605644_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP018109.1\|WP_000495367.1\|605653_606913_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.27269e-131
NZ_CP018109.1\|WP_000006900.1\|596443_597805_+\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP018109.1\|WP_000855378.1\|607735_608629_+\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP018109.1\|WP_000703900.1\|602610_603660_-\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP018109.1\|WP_001310618.1\|601353_602589_-\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP018109.1\|WP_001143556.1\|613328_613850_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.2285e-30
NZ_CP018109.1\|WP_001333621.1\|599184_600330_+\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NZ_CP018109.1\|WP_000776555.1\|615508_616051_+\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
NZ_CP018109.1\|WP_000729160.1\|614171_615038_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP018109.1\|WP_000912385.1\|611907_613293_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP018109.1\|WP_001302767.1\|597861_599163_+\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP018109.1\|WP_000540997.1\|600557_601343_-\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	2.39799e-151
NZ_CP018109.1\|WP_000212247.1\|610514_611237_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.41122e-165
NZ_CP018109.1\|WP_000152519.1\|606923_607739_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	3.47659e-37
NZ_CP018109.1\|WP_000815571.1\|608823_609891_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	2.50904e-178

>NZ_CP018109.1|WP_000855378.1|607735_608629_+|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>NZ_CP018109.1|WP_000152519.1|606923_607739_+|DUF2877-domain-containing-protein
MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP018109.1|WP_000495367.1|605653_606913_+|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPSWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP018109.1|WP_000580822.1|603976_605644_+|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALMQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP018109.1|WP_000703900.1|602610_603660_-|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP018109.1|WP_001310618.1|601353_602589_-|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP018109.1|WP_000540997.1|600557_601343_-|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NZ_CP018109.1|WP_001333621.1|599184_600330_+|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NZ_CP018109.1|WP_001302767.1|597861_599163_+|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP018109.1|WP_000006900.1|596443_597805_+|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>NZ_CP018109.1|WP_000815571.1|608823_609891_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP018109.1|WP_001295318.1|609887_610397_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP018109.1|WP_000212247.1|610514_611237_-|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRKMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP018109.1|WP_000255997.1|611239_611734_-|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP018109.1|WP_000912385.1|611907_613293_+|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP018109.1|WP_001143556.1|613328_613850_-|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFVFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMLLMGMLWWRRR
>NZ_CP018109.1|WP_000190288.1|613957_614170_-|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP018109.1|WP_000729160.1|614171_615038_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP018109.1|WP_000776555.1|615508_616051_+|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>NZ_CP018109.1|WP_000988364.1|616270_616963_+|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

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Crispr_ID: NZ_CP018109_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018109_3

3034721-3034933

TypeI-E

I-E

Consensus_repeat	Method
CTGCGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
TTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

3 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas3

The CRISPR arrays of NZ_CP018109_3

>merge|NZ_CP018109|3|3034721-3034933|PILER-CR,CRT,CRISPRCasFinder
CCGGTTTATCCCCGCTGACGCGGGGAACACGTCAATAGGCGGCGTCCCGTAGCCGTCCCCTTCGGTTTATCCCCGCTGGCGCGGGGAACACGTTGAGGTCGATAAGTACGAACGGTTTCCCTGCGGTTTATCCCCGCTGGCGCGGGGAACACCGATAGACACTTTGCGGTCATTGTCTATTCGGCGATTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP018109|3|1|3034721-3034933|PILER-CR
CCGGTTTATCCCCGCTGACGCGGGGAACACGT	CAATAGGCGGCGTCCCGTAGCCGTCCCCT
TCGGTTTATCCCCGCTGGCGCGGGGAACACGT	TGAGGTCGATAAGTACGAACGGTTTCCCT
GCGGTTTATCCCCGCTGGCGCGGGGAACACCG	ATAGACACTTTGCGGTCATTGTCTATTCG
GCGATTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP018109|3|1|3034722-3034933|CRT
CGGTTTATCCCCGCTGACGCGGGGAACAC	GTCAATAGGCGGCGTCCCGTAGCCGTCCCCTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTGAGGTCGATAAGTACGAACGGTTTCCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGATAGACACTTTGCGGTCATTGTCTATTCGG
CGATTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP018109|3|3|3034725-3034933|CRISPRCasFinder
TTTATCCCCGCTGACGCGGGGAACAC	GTCAATAGGCGGCGTCCCGTAGCCGTCCCCTTCGG
TTTATCCCCGCTGGCGCGGGGAACAC	GTTGAGGTCGATAAGTACGAACGGTTTCCCTGCGG
TTTATCCCCGCTGGCGCGGGGAACAC	CGATAGACACTTTGCGGTCATTGTCTATTCGGCGA
TTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018109.1\|WP_001246104.1\|3030035_3030359_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP018109.1\|WP_001521155.1\|3036239_3036890_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP018109.1\|WP_000956458.1\|3046335_3046488_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP018109.1\|WP_071940773.1\|3037628_3038684_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP018109.1\|WP_000568924.1\|3027276_3028326_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP018109.1\|WP_000029331.1\|3038698_3039235_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP018109.1\|WP_020234039.1\|3036871_3037618_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP018109.1\|WP_001521158.1\|3042092_3044792_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP018109.1\|WP_001521154.1\|3035029_3035323_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP018109.1\|WP_001521153.1\|3033602_3034640_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP018109.1\|WP_000372392.1\|3032442_3033351_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP018109.1\|WP_001173673.1\|3030408_3031014_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP018109.1\|WP_000082736.1\|3040054_3041035_-\|IS5-like-element-ISEc68-family-transposase	unknown	unknown	gnl\|CDD\|225581
NZ_CP018109.1\|WP_000144858.1\|3035319_3036243_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP018109.1\|WP_000246138.1\|3028801_3029512_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP018109.1\|WP_001090361.1\|3031013_3032441_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP018109.1\|WP_000517476.1\|3029530_3029842_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP018109.1\|WP_001300563.1\|3045146_3046259_-\|IS4-like-element-IS421-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP018109.1\|WP_001295182.1\|3026534_3027296_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP018109.1\|WP_001521152.1\|3028322_3028802_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851

Protein	Function_ID	Function_description	E-value
NZ_CP018109.1\|WP_001246104.1\|3030035_3030359_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP018109.1\|WP_001521155.1\|3036239_3036890_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.05036e-90
NZ_CP018109.1\|WP_000956458.1\|3046335_3046488_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP018109.1\|WP_071940773.1\|3037628_3038684_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.66084e-155
NZ_CP018109.1\|WP_000568924.1\|3027276_3028326_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP018109.1\|WP_000029331.1\|3038698_3039235_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.72866e-28
NZ_CP018109.1\|WP_020234039.1\|3036871_3037618_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.25317e-47
NZ_CP018109.1\|WP_001521158.1\|3042092_3044792_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP018109.1\|WP_001521154.1\|3035029_3035323_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	9.65861e-64
NZ_CP018109.1\|WP_001521153.1\|3033602_3034640_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP018109.1\|WP_000372392.1\|3032442_3033351_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP018109.1\|WP_001173673.1\|3030408_3031014_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP018109.1\|WP_000082736.1\|3040054_3041035_-\|IS5-like-element-ISEc68-family-transposase	gnl\|CDD\|225581	COG3039, COG3039, Transposase and inactivated derivatives, IS5 family [DNA replication, recombination, and repair].	1.43653e-49
NZ_CP018109.1\|WP_000144858.1\|3035319_3036243_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157
NZ_CP018109.1\|WP_000246138.1\|3028801_3029512_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP018109.1\|WP_001090361.1\|3031013_3032441_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP018109.1\|WP_000517476.1\|3029530_3029842_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP018109.1\|WP_001300563.1\|3045146_3046259_-\|IS4-like-element-IS421-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	3.16058e-15
NZ_CP018109.1\|WP_001295182.1\|3026534_3027296_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP018109.1\|WP_001521152.1\|3028322_3028802_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	2.39634e-105

>NZ_CP018109.1|WP_001521153.1|3033602_3034640_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSAKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP018109.1|WP_000372392.1|3032442_3033351_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP018109.1|WP_001090361.1|3031013_3032441_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP018109.1|WP_001173673.1|3030408_3031014_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP018109.1|WP_001246104.1|3030035_3030359_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP018109.1|WP_000517476.1|3029530_3029842_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP018109.1|WP_000246138.1|3028801_3029512_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP018109.1|WP_001521152.1|3028322_3028802_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP018109.1|WP_000568924.1|3027276_3028326_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP018109.1|WP_001295182.1|3026534_3027296_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP018109.1|WP_001521154.1|3035029_3035323_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRIAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGVRLVSFLPVDNQ
>NZ_CP018109.1|WP_000144858.1|3035319_3036243_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP018109.1|WP_001521155.1|3036239_3036890_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLLPAQLLHLVGRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP018109.1|WP_020234039.1|3036871_3037618_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDASYRLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP018109.1|WP_071940773.1|3037628_3038684_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFTSRAYASWALAEKGTEQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECVSFDVMNKQGSMKDVLDFICA
>NZ_CP018109.1|WP_000029331.1|3038698_3039235_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDDLLRQLRRAVKLLNGSVNLISLAEDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP018109.1|WP_000082736.1|3040054_3041035_-|IS5-like-element-ISEc68-family-transposase
MSQQLTFADSEFSSKRRQTRKEVFLGRMDDLLPWDKLLGVIEPVYPKAGNGRRPYPLETMLRIHCMQQWYNLSDEAMEDALYEIASMRQFARLSLDKAIPDRTTIMNFRHLLEQHELARKIFSTVNHWLAECGVLMTQGTLVDATIIQAPSSTKNKHNSRDEDMHQTKKGNQWYFGMKAHIGVDAKSGLTHSLVTTAANEHDLNQVGKLLHGDEEFISADAGYQGAEKRDELSDVSADWLIAKRPGKVNALKQHPRKNKLAIRYEYLKASIRAKVEHPFRIVKCQFGFVKARYKGLAKNDSQLAMLFTLANLVRVDQLIRAQARST
>NZ_CP018109.1|WP_001521158.1|3042092_3044792_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKSNCFGLTDYFRQLGFADTEQAAQFFAWLLCWHDTGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWHHYLSEYEELLPSSSLSPRKLKRVMEMWMPITTGHHGRPPDRIDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLVQAQNALTVFPLKAKVAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQCDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDSSQRAGKVLICTQVLESSVDCDMDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIASVVKPYANGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRKDPEMANVILVTDDESCGYSAMEGLTGKVG
>NZ_CP018109.1|WP_001300563.1|3045146_3046259_-|IS4-like-element-IS421-family-transposase
MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN
>NZ_CP018109.1|WP_000956458.1|3046335_3046488_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK

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Crispr_ID: NZ_CP018109_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018109_4

3064621-3065259

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

10 spacers

The CRISPR arrays of NZ_CP018109_4

>merge|NZ_CP018109|4|3064621-3065259|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATTCCCGCTGGTGCGGGGAACTCATCAGTGATATCCAACATTGCGGAGCTAAACGCGGTTTATCCCCGCTGGCGCGGGGAACTCACGAACGCGGCACACCAGGGCGTCTCATCGTCCGGTTTATCCCCGCTGGCGCGGGGAACTCGGCACATGCCTGATCATATGTGTAGCAACGGTCGGTTTATCCCCGCTGGCGCGGGGAACTCACGATGTATGACCGGAAAACCTCAGACTGGCGCGGTTTATCCCCGCTGGCGCGGGGAACTCACGATGTATGACCGGAAAACCTCAGACTGGCGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCCGCGTTATTTTCCCTGAAAACAATAAAGCTCGGTTTATCCCCGCTGGCGCGGGGAACTCTAATATCCCTGGCGATAATCAACCGGCTTACTCGGTTTATCCCCGCTGGCGCGGGGAACTCGAGAGCGAGGGGAGATTCCGGCAGGGCGTGCACGGTTTATCCCCGCTGGCGCGGGGAACTCGCGGGTATGCTCCGCTCCGTGTTCGACAAACTCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGGTCGCGGGGACGCCACGGGCAGTCAATGTCGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP018109|4|4|3064621-3065259|CRISPRCasFinder
TGGTTTATTCCCGCTGGTGCGGGGAACTC	ATCAGTGATATCCAACATTGCGGAGCTAAACG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGAACGCGGCACACCAGGGCGTCTCATCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGCACATGCCTGATCATATGTGTAGCAACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGATGTATGACCGGAAAACCTCAGACTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGATGTATGACCGGAAAACCTCAGACTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGCGTTATTTTCCCTGAAAACAATAAAGCT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATATCCCTGGCGATAATCAACCGGCTTACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GAGAGCGAGGGGAGATTCCGGCAGGGCGTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGTATGCTCCGCTCCGTGTTCGACAAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGGTCGCGGGGACGCCACGGGCAGTCAATGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP018109|4|2|3064621-3065259|CRT
TGGTTTATTCCCGCTGGTGCGGGGAACTC	ATCAGTGATATCCAACATTGCGGAGCTAAACG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGAACGCGGCACACCAGGGCGTCTCATCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGCACATGCCTGATCATATGTGTAGCAACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGATGTATGACCGGAAAACCTCAGACTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGATGTATGACCGGAAAACCTCAGACTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGCGTTATTTTCCCTGAAAACAATAAAGCT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATATCCCTGGCGATAATCAACCGGCTTACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GAGAGCGAGGGGAGATTCCGGCAGGGCGTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGTATGCTCCGCTCCGTGTTCGACAAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGGTCGCGGGGACGCCACGGGCAGTCAATGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP018109|4|2|3064682-3065259|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGAACGCGGCACACCAGGGCGTCTCATCGTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GGCACATGCCTGATCATATGTGTAGCAACGGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGATGTATGACCGGAAAACCTCAGACTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACGATGTATGACCGGAAAACCTCAGACTGGCG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGCGTTATTTTCCCTGAAAACAATAAAGCT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATATCCCTGGCGATAATCAACCGGCTTACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GAGAGCGAGGGGAGATTCCGGCAGGGCGTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGTATGCTCCGCTCCGTGTTCGACAAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGGTCGCGGGGACGCCACGGGCAGTCAATGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018109.1\|WP_000147654.1\|3057141_3058551_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP018109.1\|WP_001071643.1\|3070744_3071536_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP018109.1\|WP_001521167.1\|3056384_3057164_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP018109.1\|WP_000210878.1\|3068879_3070517_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP018109.1\|WP_000039721.1\|3062504_3063983_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP018109.1\|WP_000059301.1\|3058572_3060027_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP018109.1\|WP_001130266.1\|3053369_3053945_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP018109.1\|WP_020233775.1\|3061200_3062478_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP018109.1\|WP_100190663.1\|3054079_3055428_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP018109.1\|WP_001199973.1\|3065597_3066269_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP018109.1\|WP_000186450.1\|3075908_3078665_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP018109.1\|WP_021523232.1\|3060096_3060882_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP018109.1\|WP_000036723.1\|3067494_3068793_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP018109.1\|WP_000254738.1\|3071607_3071943_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP018109.1\|WP_000226798.1\|3072268_3074503_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP018109.1\|WP_020232912.1\|3066562_3067435_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP018109.1\|WP_000109536.1\|3053092_3053353_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP018109.1\|WP_000581937.1\|3071942_3072191_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP018109.1\|WP_001521172.1\|3074550_3075852_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP018109.1\|WP_001521165.1\|3055527_3056388_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936

Protein	Function_ID	Function_description	E-value
NZ_CP018109.1\|WP_000147654.1\|3057141_3058551_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.45668e-51
NZ_CP018109.1\|WP_001071643.1\|3070744_3071536_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	9.36315e-160
NZ_CP018109.1\|WP_001521167.1\|3056384_3057164_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	8.81851e-61
NZ_CP018109.1\|WP_000210878.1\|3068879_3070517_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP018109.1\|WP_000039721.1\|3062504_3063983_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.76431e-108
NZ_CP018109.1\|WP_000059301.1\|3058572_3060027_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.6361e-82
NZ_CP018109.1\|WP_001130266.1\|3053369_3053945_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP018109.1\|WP_020233775.1\|3061200_3062478_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.01506e-28
NZ_CP018109.1\|WP_100190663.1\|3054079_3055428_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.29095e-52
NZ_CP018109.1\|WP_001199973.1\|3065597_3066269_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP018109.1\|WP_000186450.1\|3075908_3078665_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP018109.1\|WP_021523232.1\|3060096_3060882_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.07958e-139
NZ_CP018109.1\|WP_000036723.1\|3067494_3068793_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP018109.1\|WP_000254738.1\|3071607_3071943_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP018109.1\|WP_000226798.1\|3072268_3074503_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP018109.1\|WP_020232912.1\|3066562_3067435_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	6.02863e-94
NZ_CP018109.1\|WP_000109536.1\|3053092_3053353_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
NZ_CP018109.1\|WP_000581937.1\|3071942_3072191_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP018109.1\|WP_001521172.1\|3074550_3075852_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP018109.1\|WP_001521165.1\|3055527_3056388_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	8.34461e-89

>NZ_CP018109.1|WP_000039721.1|3062504_3063983_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKLLPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYNAMNKGIFKELTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP018109.1|WP_020233775.1|3061200_3062478_+|MFS-transporter
MQHNSYRRWIALAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP018109.1|WP_021523232.1|3060096_3060882_-|SDR-family-oxidoreductase
MSIESLNALSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILINNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP018109.1|WP_000059301.1|3058572_3060027_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP018109.1|WP_000147654.1|3057141_3058551_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGIKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP018109.1|WP_001521167.1|3056384_3057164_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLELIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAVGKAAIIRKTVAAESPAMQCLQLARAEQQRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP018109.1|WP_001521165.1|3055527_3056388_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAATASWQAAQDFSGCTLAHWKIEPQPAVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSIENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHAECQ
>NZ_CP018109.1|WP_100190663.1|3054079_3055428_+|IS3-family-transposase
MKHSFEVKLAAVNHYLAGHAGIISTAKLFQLSHTSLSHWINLFLLHGPRALDCRHKRSYSPEDKLCVVLYALGHSESLPRVAARFNIPSHNTVKNWIKGYRKSGNEAFIRRRKEKSMTRSDDTHENEANMTPEEMKNELRYLRAENAYLKAMQEHLLEKKPPGAGEKTKVIRSLRCGHCQSDLLKAAGLARSTLYYQLSLQKAKDKYADVKQLIASIFHEHRGCYGYRRIHCELQKRGLKFSGKTVRKLMQQLGLKSPVRLKKYRSYRGNMGLAAENILQRQFKAEAPCEKWVTDITEFRAGGQKLYLSPILDLFNGEIVAWETACRPTEELVKRMLNKGLESLAEGEKPLLHSDQGWHYRIKSYQSALADRGLVQSMSRKGNCLDNAVMENFFGHLKEEMYYRRDYRNVEELENAVNEYITYWNQKRIKLSLGGLSPVEYRTEHQKAG
>NZ_CP018109.1|WP_001130266.1|3053369_3053945_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP018109.1|WP_000109536.1|3053092_3053353_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP018109.1|WP_001199973.1|3065597_3066269_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP018109.1|WP_020232912.1|3066562_3067435_+|YgcG-family-protein
MRYFILIFTFVCSFIAAQPTIVPSLQQQVTDLTSSLNSQEKKELTYKLESIFNNTQVQIAVLIVPTTKDETIEKYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPANPSEIESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSDGGGSSGGGGASGRW
>NZ_CP018109.1|WP_000036723.1|3067494_3068793_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP018109.1|WP_000210878.1|3068879_3070517_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP018109.1|WP_001071643.1|3070744_3071536_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVIDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP018109.1|WP_000254738.1|3071607_3071943_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP018109.1|WP_000581937.1|3071942_3072191_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP018109.1|WP_000226798.1|3072268_3074503_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRECVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVMANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP018109.1|WP_001521172.1|3074550_3075852_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDNPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLDSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVAGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP018109.1|WP_000186450.1|3075908_3078665_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG

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Crispr_ID: NZ_CP018109_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018109_5

4669908-4670057

Orphan

Consensus_repeat	Method
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018109_5

>merge|NZ_CP018109|5|4669908-4670057|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>NZ_CP018109|5|5|4669908-4670057|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTG
CGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018109.1\|WP_001066505.1\|4678600_4679239_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018109.1\|WP_000455467.1\|4679616_4679847_+\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
NZ_CP018109.1\|WP_001294554.1\|4674214_4675717_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP018109.1\|WP_000786399.1\|4669296_4669740_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP018109.1\|WP_000012906.1\|4662878_4663883_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP018109.1\|WP_001014711.1\|4665202_4666390_+\|DUF898-family-protein	unknown	unknown	gnl\|CDD\|226719
NZ_CP018109.1\|WP_000416404.1\|4666441_4669297_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP018109.1\|WP_001299662.1\|4675844_4676864_-\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP018109.1\|WP_000772653.1\|4677308_4678571_+\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_CP018109.1\|WP_001295681.1\|4672971_4674054_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP018109.1\|WP_000235891.1\|4679943_4680129_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018109.1\|WP_000397144.1\|4670093_4671605_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP018109.1\|WP_001118612.1\|4680316_4680493_+\|host-cell-division-inhibitor-Icd-like-protein	unknown	unknown	unknown
NZ_CP018109.1\|WP_001333751.1\|4664506_4665010_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP018109.1\|WP_000584114.1\|4671871_4672972_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP018109.1\|WP_000230272.1\|4658437_4658833_-\|RidA-family-protein	unknown	unknown	gnl\|CDD\|100005
NZ_CP018109.1\|WP_000002954.1\|4664044_4664461_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP018109.1\|WP_000256665.1\|4659747_4660341_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP018109.1\|WP_001333754.1\|4660485_4660938_+\|toxin-antitoxin-biofilm-protein-TabA	unknown	unknown	gnl\|CDD\|225345
NZ_CP018109.1\|WP_000500681.1\|4658963_4659677_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714

Protein	Function_ID	Function_description	E-value
NZ_CP018109.1\|WP_000455467.1\|4679616_4679847_+\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.99457e-15
NZ_CP018109.1\|WP_001294554.1\|4674214_4675717_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP018109.1\|WP_000786399.1\|4669296_4669740_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NZ_CP018109.1\|WP_000012906.1\|4662878_4663883_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP018109.1\|WP_001014711.1\|4665202_4666390_+\|DUF898-family-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	3.73478e-110
NZ_CP018109.1\|WP_000416404.1\|4666441_4669297_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP018109.1\|WP_001299662.1\|4675844_4676864_-\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	8.44277e-169
NZ_CP018109.1\|WP_000772653.1\|4677308_4678571_+\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	6.37182e-82
NZ_CP018109.1\|WP_001295681.1\|4672971_4674054_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP018109.1\|WP_000397144.1\|4670093_4671605_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP018109.1\|WP_001333751.1\|4664506_4665010_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.71083e-18
NZ_CP018109.1\|WP_000584114.1\|4671871_4672972_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP018109.1\|WP_000230272.1\|4658437_4658833_-\|RidA-family-protein	gnl\|CDD\|100005	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.	6.86533e-58
NZ_CP018109.1\|WP_000002954.1\|4664044_4664461_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	8.03891e-69
NZ_CP018109.1\|WP_000256665.1\|4659747_4660341_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.97779e-10
NZ_CP018109.1\|WP_001333754.1\|4660485_4660938_+\|toxin-antitoxin-biofilm-protein-TabA	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	4.50803e-70
NZ_CP018109.1\|WP_000500681.1\|4658963_4659677_-\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	1.04315e-149

>NZ_CP018109.1|WP_000786399.1|4669296_4669740_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP018109.1|WP_000416404.1|4666441_4669297_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEEEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIDGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP018109.1|WP_001014711.1|4665202_4666390_+|DUF898-family-protein
MNGVNVGKDNPRHAFVFTGKGGEYFLICLVNFLLTIITLGIYGPWALVKCRRYICQHVTLKGQPFSYKGTGGAIFVSMLLIMVVYFLSISCVAGQHFVLAFLLFALLICGIPCMAVKSLQYQANMTSLNGIRFGFNCSMLRAWWVMLGLPVLLALAFWLVLYLIAQVTTSIGGLFFNLVVLSLLSVIGLGVINGITYSKWMPLLGNNATFGVHQFSIKVNVKECIKGCMLAILTMVPFIIVIGIMIAPVFQQLIMMSMLGQSEAGGELILQYYPQIMASYFLYFVAILVFASYLYVTLRSLFLNNLTLANGTIRFHSSVTTFGMLLRMLAVLMGSSITCGLAYPWLKMWMVSWIANNTHVQGDLDSLELTNDDKPQDSGPLMWISRGIMPYVPFI
>NZ_CP018109.1|WP_001333751.1|4664506_4665010_-|GNAT-family-N-acetyltransferase
MNVVASPALRLRKLTVADNPAIASVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>NZ_CP018109.1|WP_000002954.1|4664044_4664461_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEEDDGVRH
>NZ_CP018109.1|WP_000012906.1|4662878_4663883_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNNKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSN
>NZ_CP018109.1|WP_001333754.1|4660485_4660938_+|toxin-antitoxin-biofilm-protein-TabA
MIIGNIHNLQPWLPQELRQAIEHVKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP018109.1|WP_000256665.1|4659747_4660341_+|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILLDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE
>NZ_CP018109.1|WP_000500681.1|4658963_4659677_-|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRHFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHGFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>NZ_CP018109.1|WP_000230272.1|4658437_4658833_-|RidA-family-protein
MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGTPEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPEKQFEDIMTVKNEIFSAPPYPNWTAVGVTWLAGFDFEIKVIARIPAQ
>NZ_CP018109.1|WP_000397144.1|4670093_4671605_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP018109.1|WP_000584114.1|4671871_4672972_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP018109.1|WP_001295681.1|4672971_4674054_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP018109.1|WP_001294554.1|4674214_4675717_-|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLTLEQQGATHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEMLQKGVQASTEQQNNPAVKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_CP018109.1|WP_001299662.1|4675844_4676864_-|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF
>NZ_CP018109.1|WP_000772653.1|4677308_4678571_+|integrase-arm-type-DNA-binding-domain-containing-protein
MKLNARQIETAKPKEKAYKMADGGGLYLEVSPKGSKYWRMKYRRPSDKKEDRLAFGVYPTVTLAEARGKRDAAKKLLSQGIDPKAEQKGAQAEIEGAYLFETIARQWHASNLTWSEDHSRRVLLTLEQYIFPSIGQIDARTLRTSQLLNPIKAVDTAGKHDVAQRLMQRVTAIMRFGVQNDLLESNPACDMAGALLSVKATHHPALPPKRIPELLERLSRYKGRLMTRLAVELTLLTFIRSSEMRFARWSEVNFERSEWTIPGIRKPIPGVKHSERGMKMKTEHIVPLSKQAFDIFKRLHALSGKGEVIFPSDHDPKKVMSENTVNNALRVMGYDTKTEVCGHGFRTMARGALSESKLWNDDAIERQLSHVERKNVKGSYMHTSEYLEERRLMLQWWADYIDANKNGSVTPYDFARMHGK
>NZ_CP018109.1|WP_001066505.1|4678600_4679239_+|hypothetical-protein
MNNTQFDNNLFYFNRLTYITPHEVALAMNGFDYDTENDELTEVQLKEVIRLRKAITRNLQLINEYKNVSATQKVEANLLLTAAYIFQREGIVPVEIKERIENALRQQVKNKDWSDILMTLGGSELYEVGKKLRSNGRGQYRKDDEDNYSCKLIYLLIELLKRHGKVSYSDNSVIYNDIVSFCNENEILMKGVKKATFYKKIKLGKDIIKYGE
>NZ_CP018109.1|WP_000455467.1|4679616_4679847_+|AlpA-family-phage-regulatory-protein
MEYANSFSDNQTLISAKEVLRRVQRSKAWLYKQLANNTFPRPVKIGTRAISFVESEVDHWIQEQIYASRGERYENH
>NZ_CP018109.1|WP_000235891.1|4679943_4680129_-|hypothetical-protein
MATSSTNNKSQQLNARFPHDVVAELESNLEDGETKAQFIVTAVKGEIKRRQRRKNKPEQGS
>NZ_CP018109.1|WP_001118612.1|4680316_4680493_+|host-cell-division-inhibitor-Icd-like-protein
MAKQKCTWLFAAINRSQRNARPVMLRITADNERSARRRLAPDYVLSFAGRIPCGGEHA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018109_4	4.2\|3064711\|32\|NZ_CP018109\|CRISPRCasFinder,CRT,PILER-CR	3064711-3064742	32	KT898133	Aeromonas phage phiARM81ld, complete genome	45655-45686	2	0.938
NZ_CP018109_3	3.1\|3034753\|29\|NZ_CP018109\|PILER-CR	3034753-3034781	29	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	295848-295876	6	0.793
NZ_CP018109_3	3.2\|3034814\|29\|NZ_CP018109\|PILER-CR	3034814-3034842	29	NZ_CP044084	Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence	347859-347887	6	0.793
NZ_CP018109_4	4.8\|3065077\|32\|NZ_CP018109\|CRISPRCasFinder,CRT,PILER-CR	3065077-3065108	32	NC_016040	Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence	37866-37897	6	0.812
NZ_CP018109_4	4.6\|3064955\|32\|NZ_CP018109\|CRISPRCasFinder,CRT,PILER-CR	3064955-3064986	32	KC821619	Cellulophaga phage phi18:1, complete genome	6924-6955	7	0.781
NZ_CP018109_4	4.6\|3064955\|32\|NZ_CP018109\|CRISPRCasFinder,CRT,PILER-CR	3064955-3064986	32	KC821627	Cellulophaga phage phi18:2, complete genome	6924-6955	7	0.781
NZ_CP018109_3	3.5\|3034812\|32\|NZ_CP018109\|CRT	3034812-3034843	32	NZ_CP044084	Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence	347859-347890	8	0.75
NZ_CP018109_4	4.2\|3064711\|32\|NZ_CP018109\|CRISPRCasFinder,CRT,PILER-CR	3064711-3064742	32	MN901520	Halorubrum coriense virus Hardycor2, complete genome	16524-16555	8	0.75
NZ_CP018109_4	4.7\|3065016\|32\|NZ_CP018109\|CRISPRCasFinder,CRT,PILER-CR	3065016-3065047	32	MN855878	Bacteriophage sp. isolate 336, complete genome	5171-5202	8	0.75
NZ_CP018109_4	4.10\|3065199\|32\|NZ_CP018109\|CRISPRCasFinder,CRT,PILER-CR	3065199-3065230	32	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	107507-107538	8	0.75
NZ_CP018109_4	4.10\|3065199\|32\|NZ_CP018109\|CRISPRCasFinder,CRT,PILER-CR	3065199-3065230	32	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	199281-199312	8	0.75
NZ_CP018109_3	3.4\|3034751\|32\|NZ_CP018109\|CRT	3034751-3034782	32	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	11267-11298	9	0.719
NZ_CP018109_4	4.6\|3064955\|32\|NZ_CP018109\|CRISPRCasFinder,CRT,PILER-CR	3064955-3064986	32	NZ_CP020483	Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence	383-414	9	0.719
NZ_CP018109_1	1.1\|468517\|59\|NZ_CP018109\|CRISPRCasFinder	468517-468575	59	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	97-155	10	0.831
NZ_CP018109_1	1.1\|468517\|59\|NZ_CP018109\|CRISPRCasFinder	468517-468575	59	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40375-40433	11	0.814

1. spacer 4.2|3064711|32|NZ_CP018109|CRISPRCasFinder,CRT,PILER-CR matches to KT898133 (Aeromonas phage phiARM81ld, complete genome) position: , mismatch: 2, identity: 0.938

acgaacgcggcacaccagggcgtctcatcgtc	CRISPR spacer
acgaacgcggcgcaccagggcgtctcgtcgtc	Protospacer
***********.**************.*****

2. spacer 3.1|3034753|29|NZ_CP018109|PILER-CR matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 6, identity: 0.793

gtcaataggcggcgtcccgtagccgtccc	CRISPR spacer
gtgttttcgcggcgtcccgtagccgcccc	Protospacer
**   *  *****************.***

3. spacer 3.2|3034814|29|NZ_CP018109|PILER-CR matches to NZ_CP044084 (Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.793

gttgaggtcgataagtacgaacggtttcc	CRISPR spacer
gaagaggtcgatgagtacgaatggttaca	Protospacer
*  *********.********.**** *

4. spacer 4.8|3065077|32|NZ_CP018109|CRISPRCasFinder,CRT,PILER-CR matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.812

gagagcgaggggagattccggcagggcgtgca	CRISPR spacer
aatcgtgaggggatcttccggcagggcgtgca	Protospacer
.*  *.*******  *****************

5. spacer 4.6|3064955|32|NZ_CP018109|CRISPRCasFinder,CRT,PILER-CR matches to KC821619 (Cellulophaga phage phi18:1, complete genome) position: , mismatch: 7, identity: 0.781

gccgcgttattttccctgaaaacaataaagct	CRISPR spacer
gcggttttattttccctgaaaagaaaaaagag	Protospacer
** *. **************** ** ****

6. spacer 4.6|3064955|32|NZ_CP018109|CRISPRCasFinder,CRT,PILER-CR matches to KC821627 (Cellulophaga phage phi18:2, complete genome) position: , mismatch: 7, identity: 0.781

gccgcgttattttccctgaaaacaataaagct	CRISPR spacer
gcggttttattttccctgaaaagaaaaaagag	Protospacer
** *. **************** ** ****

7. spacer 3.5|3034812|32|NZ_CP018109|CRT matches to NZ_CP044084 (Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gttgaggtcgataagtacgaacggtttccctg	CRISPR spacer
gaagaggtcgatgagtacgaatggttacagcg	Protospacer
*  *********.********.**** *  .*

8. spacer 4.2|3064711|32|NZ_CP018109|CRISPRCasFinder,CRT,PILER-CR matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 8, identity: 0.75

acgaacgcggcacaccagggcgtctcatcgtc--	CRISPR spacer
ccgaacgcggcacacccgagcg--tcggcggcgg	Protospacer
 *************** *.***  **. ** *

9. spacer 4.7|3065016|32|NZ_CP018109|CRISPRCasFinder,CRT,PILER-CR matches to MN855878 (Bacteriophage sp. isolate 336, complete genome) position: , mismatch: 8, identity: 0.75

taatatccc----tggcgataatcaaccggcttact	CRISPR spacer
----acgccatggtggcgataatcatcctgcttact	Protospacer
    *. **    ************ ** *******

10. spacer 4.10|3065199|32|NZ_CP018109|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 8, identity: 0.75

aaggtcgcggggacgccacgggcagtcaatgt	CRISPR spacer
gatttcgctgggaccccacgggcagtcgacgg	Protospacer
.*  **** ***** ************.*.*

11. spacer 4.10|3065199|32|NZ_CP018109|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

aaggtcgcggggacgccacgggcagtcaatgt	CRISPR spacer
gatttcgctgggaccccacgggcagtcgacgg	Protospacer
.*  **** ***** ************.*.*

12. spacer 3.4|3034751|32|NZ_CP018109|CRT matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

gtcaataggcggcgtcccgtagccgtcccctt	CRISPR spacer
gtgctctggcggcgtgccgtagccatccccga	Protospacer
**   . ******** ********.*****

13. spacer 4.6|3064955|32|NZ_CP018109|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP020483 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence) position: , mismatch: 9, identity: 0.719

gccgcgttattttccctgaaaacaataaagct	CRISPR spacer
tagcctttattttcactcaaaacaataaaagt	Protospacer
    * ******** ** ***********. *

14. spacer 1.1|468517|59|NZ_CP018109|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

ggtgccagaaccgtaggccggataaggcgttcacgccgcatccggcaataagtgctccg-	CRISPR spacer
gagcacagaaccgtaggacggataaggcgttcacgccgcatccggcgat-cgtgcactga	Protospacer
*.   ************ ****************************.**  **** *.*

15. spacer 1.1|468517|59|NZ_CP018109|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

-ggtgccagaaccgtaggccggataaggcgttcacgccgcatccggcaataagtgctccg	CRISPR spacer
tcgcacca-aaccgtaggccggataaggcgtttacgccgcatccggcaaaaagccgtacc	Protospacer
  *..*** ***********************.**************** ***.  * *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

201313 : 274157

uncultured_Caudovirales_phage(20.0%)

protease,tRNA,plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295561.1\|201313_202666_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240896.1\|202695_205128_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|205249_205735_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139279.1\|205738_206764_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|206868_207324_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|207327_208116_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000139654.1\|208115_209264_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569430.1\|209260_209857_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	1.0e-26	40.0
WP_071940724.1\|209893_213376_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	1.7e-209	36.9
WP_000055741.1\|213388_214348_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001020973.1\|214446_216588_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901099.1\|216644_217034_+	VOC family protein	NA	NA	NA	NA
WP_000176549.1\|217098_218397_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062312.1\|218445_218706_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|218692_218893_-	YaeP family protein	NA	NA	NA	NA
WP_001185290.1\|219058_219604_+	YaeQ family protein	NA	NA	NA	NA
WP_000635537.1\|219600_220023_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000239163.1\|220036_220747_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_001336393.1\|220946_221771_-	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_001260712.1\|221824_223543_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094011.1\|223654_224362_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202329.1\|224358_224763_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874226.1\|224880_225696_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294600.1\|225735_226389_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000594006.1\|226381_227413_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	9.4e-36	39.7
WP_001140187.1\|227600_228176_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000997010.1\|233936_234740_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.4e-39	36.2
WP_000648572.1\|234736_235651_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001230983.1\|235891_236692_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000644685.1\|237366_238725_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001052715.1\|238796_239552_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_001326702.1\|239585_240308_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917883.1\|240304_240772_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001340895.1\|240836_241568_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	4.5e-40	39.0
WP_001086141.1\|242104_242890_+	lipoprotein	NA	NA	NA	NA
WP_001236653.1\|243026_243506_-	hypothetical protein	NA	NA	NA	NA
WP_000908066.1\|243515_244430_-	hypothetical protein	NA	NA	NA	NA
WP_001284199.1\|244473_244956_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001087741.1\|244979_246332_-	ImpA family type VI secretion system protein	NA	NA	NA	NA
WP_122545204.1\|246342_249777_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001240525.1\|249885_251298_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_000088852.1\|251302_252046_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_000614325.1\|252042_254808_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.8e-81	30.8
WP_000343289.1\|254816_255578_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000246443.1\|255582_256914_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001080149.1\|256916_257441_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_001113709.1\|257437_258718_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_000348793.1\|258742_259825_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000393852.1\|259788_261639_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000611744.1\|261642_262056_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000056989.1\|262062_263538_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000123970.1\|263588_263813_-	hypothetical protein	NA	NA	NA	NA
WP_000037397.1\|263847_264348_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_001142958.1\|265042_265561_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_032329316.1\|265770_267912_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.4e-25	25.0
WP_000508724.1\|267987_272220_+	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	6.4e-22	43.1
WP_001101839.1\|272197_272590_+	hypothetical protein	NA	NA	NA	NA
WP_071940725.1\|273020_274157_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

281337 : 338880

Enterobacteria_phage(45.45%)

integrase,transposase

attL 275762:275777|attR 307962:307977

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
275762:275777	attL	NA	NA	NA	NA
WP_000343760.1\|281337_282558_-\|transposase	ISL3-like element ISKox3 family transposase	NA	NA	NA	NA
WP_000056849.1\|282814_283564_+	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	9.0e-20	38.5
WP_000006255.1\|283739_284237_+\|transposase	REP-associated tyrosine transposase RayT	NA	NA	NA	NA
WP_001334802.1\|284460_286200_-	flagellar biosynthesis protein FlhA	NA	NA	NA	NA
WP_000207552.1\|286144_286930_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_001226164.1\|287000_288056_+	DNA polymerase IV	NA	NA	NA	NA
WP_000554758.1\|288107_288401_+	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA
WP_001263489.1\|288403_288802_+	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA
WP_001059892.1\|288811_289264_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001292994.1\|290361_291819_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001291990.1\|292079_292538_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_000189532.1\|292629_293874_+	esterase FrsA	NA	NA	NA	NA
WP_000174677.1\|293931_294333_+	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000749867.1\|294371_295427_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.6e-118	61.1
WP_001285288.1\|295714_296818_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000893278.1\|296829_298083_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	9.8e-96	47.2
WP_000772656.1\|298436_299645_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	7.7e-130	56.5
WP_001087767.1\|299886_301095_+	SAM-dependent DNA methyltransferase	NA	NA	NA	NA
WP_000132880.1\|301087_302794_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_000920172.1\|302771_303842_+	hypothetical protein	NA	NA	NA	NA
WP_001333700.1\|306466_306724_-	YjhX family toxin	NA	NA	NA	NA
WP_001081495.1\|307098_307842_-	epimerase	NA	NA	NA	NA
WP_000558519.1\|307852_308143_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
307962:307977	attR	NA	NA	NA	NA
WP_000774153.1\|308191_309067_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_000155278.1\|309095_310118_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000197460.1\|310144_311143_-	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000911138.1\|311142_312189_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_001178466.1\|312182_313736_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	2.9e-12	22.2
WP_024176379.1\|313985_314942_+	transcriptional regulator LsrR	NA	NA	NA	NA
WP_000057773.1\|315041_316634_+	autoinducer-2 kinase	NA	NA	NA	NA
WP_000597528.1\|316646_316997_+	cupin domain-containing protein	NA	NA	NA	NA
WP_139371347.1\|319158_320371_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_001013303.1\|323116_323542_-	hypothetical protein	NA	NA	NA	NA
WP_021534030.1\|323538_323922_-	hypothetical protein	NA	NA	NA	NA
WP_139371347.1\|324693_325906_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_072146520.1\|326437_326587_-	hemolysin activation protein	NA	NA	NA	NA
WP_001335904.1\|327659_328451_+	hypothetical protein	NA	NA	NA	NA
WP_021517769.1\|328835_329042_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_021527306.1\|329135_329738_+	hypothetical protein	NA	NA	NA	NA
WP_001336040.1\|332144_333293_+	hypothetical protein	NA	NA	NA	NA
WP_000375614.1\|334154_335273_+	hypothetical protein	NA	NA	NA	NA
WP_000569129.1\|335363_335711_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000422741.1\|336463_336889_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|336885_337236_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000080200.1\|337266_338880_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.8e-182	63.6

DBSCAN-SWA_3

1237311 : 1328804

112

Escherichia_phage(29.55%)

portal,tail,tRNA,terminase,capsid,protease,transposase,head,integrase,holin

attL 1254151:1254166|attR 1309952:1309967

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000074971.1\|1237311_1238430_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	1.6e-84	44.4
WP_000003742.1\|1238398_1238668_-	excisionase	NA	NA	NA	NA
WP_000102136.1\|1238729_1241171_-	exonuclease	V5UQJ3	Shigella_phage	3.1e-114	46.9
WP_001070255.1\|1241264_1241456_-	DUF1482 family protein	NA	NA	NA	NA
WP_000854558.1\|1241452_1241641_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001171946.1\|1242209_1242428_-	hypothetical protein	NA	NA	NA	NA
WP_042046576.1\|1242499_1242799_-	hypothetical protein	NA	NA	NA	NA
WP_001420344.1\|1243152_1243491_-	peptidase S24	H9C160	Pectobacterium_phage	2.5e-06	32.0
WP_000747951.1\|1243882_1244125_+	hypothetical protein	H9C161	Pectobacterium_phage	4.8e-07	55.8
WP_000693850.1\|1244108_1244534_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262390.1\|1244605_1245676_+	hypothetical protein	A0A088CD36	Shigella_phage	2.6e-52	56.6
WP_001151150.1\|1245716_1246139_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.6e-64	90.6
WP_000403785.1\|1246196_1246553_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.8e-58	99.2
WP_001224662.1\|1246646_1246829_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.4e-27	100.0
WP_000753060.1\|1246821_1246998_+	hypothetical protein	A0A2R2X2A8	Escherichia_phage	6.7e-27	94.8
WP_000813254.1\|1247920_1248076_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_032155008.1\|1248243_1248522_+	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
WP_001221526.1\|1248523_1249582_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.5e-89	48.0
WP_000139999.1\|1249582_1249963_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.6
WP_000762879.1\|1249959_1250781_+	antitermination protein	K7P7B9	Enterobacteria_phage	5.1e-77	58.2
WP_106104550.1\|1251175_1251262_+	DUF3927 family protein	NA	NA	NA	NA
WP_001333559.1\|1251750_1251963_-	hypothetical protein	NA	NA	NA	NA
WP_170386723.1\|1252156_1253128_-\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
WP_000874243.1\|1253701_1253890_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	7.2e-27	95.2
WP_001333561.1\|1253886_1254048_+	hypothetical protein	Q08JA2	Stx2-converting_phage	5.9e-14	87.0
1254151:1254166	attL	NA	NA	NA	NA
WP_000372595.1\|1254197_1254413_+\|holin	class II holin family protein	A0A2R2Z340	Escherichia_phage	3.4e-33	98.6
WP_071940739.1\|1254417_1254768_+	YdfR family protein	K7PGU6	Enterobacteria_phage	5.4e-36	92.9
WP_000992097.1\|1254831_1255365_+	lysozyme	Q08J98	Stx2-converting_phage	1.5e-98	93.2
WP_075202333.1\|1255581_1255764_+	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	2.2e-17	77.0
WP_000738421.1\|1255854_1256148_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001135104.1\|1256673_1257024_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	8.0e-64	96.6
WP_001333563.1\|1257171_1257654_+\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	8.7e-85	98.1
WP_001140892.1\|1257653_1259411_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.3
WP_000811487.1\|1259407_1259569_+	hypothetical protein	NA	NA	NA	NA
WP_000923134.1\|1259558_1260785_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	3.7e-204	83.3
WP_000999828.1\|1260777_1261377_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.9e-89	81.0
WP_000766109.1\|1261391_1262609_+\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	5.9e-162	71.6
WP_000719064.1\|1262685_1263003_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	5.3e-22	49.5
WP_001147814.1\|1263011_1263350_+\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	7.5e-51	90.2
WP_000968644.1\|1263346_1263796_+	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	6.1e-64	81.2
WP_001206700.1\|1263792_1264137_+	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	5.1e-55	96.5
WP_000097535.1\|1264197_1264902_+	hypothetical protein	A0A1B5FP82	Escherichia_phage	1.4e-112	92.7
WP_000164661.1\|1264916_1265288_+\|tail	phage tail assembly chaperone	A0A1B5FP91	Escherichia_phage	6.5e-64	100.0
WP_000978926.1\|1265311_1265590_+	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	5.3e-42	95.7
WP_000224003.1\|1265636_1268864_+\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	95.0
WP_001330090.1\|1268841_1269198_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.8e-40	66.7
WP_001152457.1\|1269197_1269896_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	3.4e-130	97.0
WP_001333568.1\|1269901_1270645_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.5e-149	97.2
WP_000090843.1\|1270581_1271190_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.9e-100	94.1
WP_000515345.1\|1271250_1274730_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.9
WP_001233546.1\|1274797_1275397_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	1.6e-107	95.0
WP_139371347.1\|1278787_1280001_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_042047081.1\|1280002_1280533_+\|tail	tail fiber domain-containing protein	A0A2D1UII2	Escherichia_phage	2.5e-69	85.2
WP_139371347.1\|1280755_1281968_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_000241001.1\|1282083_1282752_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000799406.1\|1283306_1284170_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000531594.1\|1284153_1285290_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
WP_000359434.1\|1285539_1286766_+	peptidase T	NA	NA	NA	NA
WP_000456506.1\|1286814_1287936_-	[50S ribosomal protein L16]-arginine 3-hydroxylase	NA	NA	NA	NA
WP_000735412.1\|1288011_1289472_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265471.1\|1289471_1290143_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423742.1\|1290311_1291682_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	44.9
WP_001297479.1\|1291685_1292327_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_001297484.1\|1292362_1293469_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476093.1\|1293522_1293984_-	phosphatase NudJ	NA	NA	NA	NA
WP_001248681.1\|1293993_1294647_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444493.1\|1294818_1296069_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_042345983.1\|1296181_1297324_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z02	Phage_21	5.9e-172	81.6
WP_000089156.1\|1297313_1297550_-	excisionase	NA	NA	NA	NA
WP_042345979.1\|1297613_1297805_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	1.2e-26	87.3
WP_042345976.1\|1297801_1298587_-	hypothetical protein	A4JX52	Burkholderia_virus	1.3e-61	51.0
WP_023301986.1\|1298586_1298886_-	hypothetical protein	NA	NA	NA	NA
WP_040219347.1\|1299249_1299945_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	1.6e-87	72.0
WP_001191665.1\|1300042_1300285_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-25	80.3
WP_004213338.1\|1300319_1300781_+	hypothetical protein	K7PJS5	Enterobacterial_phage	1.7e-69	88.2
WP_023317571.1\|1301018_1301231_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.2e-16	72.7
WP_042345967.1\|1301187_1302102_+	conserved phage C-terminal domain-containing protein	H2DE83	Erwinia_phage	1.4e-30	60.6
WP_042345965.1\|1302098_1302908_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	7.7e-110	69.3
WP_000779146.1\|1302917_1303295_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	2.3e-48	73.6
WP_042345962.1\|1303307_1304288_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.1e-134	67.2
WP_042345959.1\|1304301_1304880_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.2e-50	56.7
WP_057077933.1\|1304955_1305552_-	hypothetical protein	NA	NA	NA	NA
WP_017145563.1\|1305681_1306077_+\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	2.6e-63	98.5
WP_019705280.1\|1306063_1306345_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.9e-37	80.6
WP_042346306.1\|1306344_1306974_+	glycoside hydrolase family 19 protein	F1C591	Cronobacter_phage	1.0e-85	73.9
WP_042346304.1\|1306975_1307284_+	hypothetical protein	A0A289ZTW9	Serratia_phage	6.7e-14	51.5
WP_042346301.1\|1307280_1307556_+	hypothetical protein	G8C7W1	Escherichia_phage	3.7e-24	66.3
WP_042346295.1\|1307779_1308715_+	DUF4747 family protein	NA	NA	NA	NA
WP_042346292.1\|1308716_1309346_+	hypothetical protein	NA	NA	NA	NA
WP_040182580.1\|1309975_1310266_+	HNH endonuclease	A0A286N2R3	Klebsiella_phage	2.9e-51	94.8
1309952:1309967	attR	NA	NA	NA	NA
WP_042346284.1\|1310278_1310488_+	hypothetical protein	A0A286N2R4	Klebsiella_phage	5.3e-23	82.6
WP_042346281.1\|1310609_1311044_+	hypothetical protein	A0A286S1P9	Klebsiella_phage	1.1e-73	99.3
WP_042346278.1\|1311053_1312586_+\|terminase	terminase	A0A286S1M9	Klebsiella_phage	5.1e-296	99.8
WP_042346275.1\|1312588_1313866_+\|portal	phage portal protein	A0A286S1N5	Klebsiella_phage	1.2e-245	99.5
WP_004216821.1\|1313871_1314552_+\|head,protease	HK97 family phage prohead protease	A0A286S1N1	Klebsiella_phage	1.6e-124	100.0
WP_042346268.1\|1314563_1315727_+\|capsid	phage major capsid protein	A0A286S1R4	Klebsiella_phage	1.5e-210	99.0
WP_149025458.1\|1315764_1316007_+	hypothetical protein	NA	NA	NA	NA
WP_042346263.1\|1315954_1316281_+\|head,tail	phage gp6-like head-tail connector protein	A0A286S294	Klebsiella_phage	3.7e-55	97.2
WP_042346260.1\|1316341_1316554_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.1e-15	74.3
WP_023317183.1\|1316555_1316888_+\|head	phage head closure protein	A0A286S2A2	Klebsiella_phage	3.4e-56	99.1
WP_042346256.1\|1316880_1317420_+	HK97 gp10 family phage protein	A0A286S249	Klebsiella_phage	2.2e-92	95.5
WP_049162797.1\|1317416_1317782_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	9.3e-63	94.2
WP_017880225.1\|1317838_1318330_+\|tail	major tail subunit	A0A286S1Q8	Klebsiella_phage	2.3e-88	99.4
WP_042346250.1\|1318373_1318757_+\|tail	phage tail assembly chaperone family protein, TAC	A0A286S1N4	Klebsiella_phage	4.0e-56	92.3
WP_032432338.1\|1318759_1319023_+	hypothetical protein	A0A286S1P2	Klebsiella_phage	3.6e-40	92.0
WP_042346245.1\|1319086_1319479_+	hypothetical protein	A0A286S1N7	Klebsiella_phage	3.6e-20	42.2
WP_042346242.1\|1319548_1321984_+\|tail	phage tail length tape measure protein	A0A286S1S3	Klebsiella_phage	0.0e+00	88.4
WP_042346239.1\|1321983_1322463_+	hypothetical protein	A0A286S298	Klebsiella_phage	3.3e-92	97.5
WP_042346237.1\|1322449_1322932_+	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	2.8e-83	95.6
WP_042346234.1\|1322942_1323323_+	hypothetical protein	A0A286S2A6	Klebsiella_phage	6.2e-70	96.0
WP_057077865.1\|1323319_1326388_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	96.0
WP_057077864.1\|1326464_1328804_+	SGNH/GDSL hydrolase family protein	A0A286S1P0	Klebsiella_phage	4.0e-50	76.3

DBSCAN-SWA_4

1332034 : 1338474

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022066379.1\|1332034_1332604_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	3.9e-92	98.3
WP_004179627.1\|1333168_1333588_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	58.3
WP_042346540.1\|1333589_1334855_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	2.1e-207	82.9
WP_042346543.1\|1335041_1335485_+	hypothetical protein	NA	NA	NA	NA
WP_000539894.1\|1335836_1335989_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.4e-20	96.0
WP_001295666.1\|1336091_1336415_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	3.0e-41	65.4
WP_120795380.1\|1336674_1336719_-	protein YmgK	NA	NA	NA	NA
WP_032082692.1\|1336954_1337065_-	hypothetical protein	NA	NA	NA	NA
WP_000373101.1\|1337117_1337522_-	DUF1398 domain-containing protein	NA	NA	NA	NA
WP_000332303.1\|1337742_1338474_-	DNA-binding transcriptional repressor BluR	Q9EYF2	Enterobacteria_phage	2.7e-53	50.5

DBSCAN-SWA_5

2597083 : 2603456

Enterobacteria_phage(33.33%)

integrase,transposase

attL 2598144:2598166|attR 2610992:2611014

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000368131.1\|2597083_2598016_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.2e-167	100.0
2598144:2598166	attL	NA	NA	NA	NA
WP_023149819.1\|2598330_2599617_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	3.2e-65	37.3
WP_001535476.1\|2599609_2600365_+	hypothetical protein	NA	NA	NA	NA
WP_000749077.1\|2600521_2600713_+	AlpA family transcriptional regulator	E5E3Y1	Burkholderia_phage	4.2e-06	49.0
WP_001461315.1\|2600761_2600953_+	hypothetical protein	NA	NA	NA	NA
WP_000422741.1\|2601039_2601465_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_000624722.1\|2601461_2601812_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000080200.1\|2601842_2603456_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.8e-182	63.6
2610992:2611014	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2857313 : 2974925

112

Erwinia_phage(20.75%)

portal,tRNA,tail,terminase,capsid,transposase,integrase,head,plate

attL 2854252:2854267|attR 2937402:2937417

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2854252:2854267	attL	NA	NA	NA	NA
WP_001521090.1\|2857313_2858351_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|2858557_2858977_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_001308860.1\|2859045_2859744_+\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_071940767.1\|2859775_2862436_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949265.1\|2862549_2863905_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001696047.1\|2863950_2864274_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000841103.1\|2864270_2865569_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
WP_100190661.1\|2865877_2867226_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	5.1e-74	52.1
WP_024176393.1\|2872806_2875380_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	1.2e-127	35.4
WP_001520329.1\|2875509_2876241_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079112.1\|2876237_2877218_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197689.1\|2877352_2878090_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178456.1\|2878360_2878702_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_001386991.1\|2878805_2878853_+	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_020233815.1\|2878951_2880112_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000225220.1\|2880154_2881276_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168045.1\|2881286_2882357_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.0e-90	51.2
WP_001314943.1\|2882566_2882932_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001520332.1\|2883081_2883600_+	YfiR family protein	NA	NA	NA	NA
WP_021523227.1\|2883589_2884816_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_001520334.1\|2884831_2885314_+	OmpA family protein	NA	NA	NA	NA
WP_000065253.1\|2885390_2885738_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000264781.1\|2885779_2886547_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043335.1\|2886577_2887126_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256450.1\|2887144_2887393_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460035.1\|2887641_2889003_-	signal recognition particle protein	NA	NA	NA	NA
WP_001338897.1\|2889169_2889961_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_010723175.1\|2889981_2891268_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001296310.1\|2891322_2891916_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001520335.1\|2892038_2892917_+	NAD(+) kinase	NA	NA	NA	NA
WP_001520336.1\|2893002_2894664_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203437.1\|2894812_2895154_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001117838.1\|2895215_2895506_-	RnfH family protein	NA	NA	NA	NA
WP_000600189.1\|2895495_2895972_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_001520337.1\|2896103_2896586_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	46.8
WP_001120794.1\|2901962_2902082_-	hypothetical protein	NA	NA	NA	NA
WP_019842420.1\|2902235_2902379_-	hypothetical protein	NA	NA	NA	NA
WP_001521105.1\|2902832_2904287_-	DUF5507 domain-containing protein	NA	NA	NA	NA
WP_052935640.1\|2905333_2906797_+	hypothetical protein	NA	NA	NA	NA
WP_052935639.1\|2906807_2907812_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	2.2e-191	97.6
WP_052935638.1\|2907811_2908387_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	1.2e-67	65.4
WP_001630878.1\|2908519_2908783_+	hypothetical protein	A0A218M4I5	Erwinia_phage	3.1e-44	100.0
WP_052935637.1\|2908813_2909323_+	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	1.2e-89	98.8
WP_052935636.1\|2909330_2909558_+	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	1.6e-33	92.0
WP_052935635.1\|2909544_2909745_+	hypothetical protein	A0A0M5M7U3	Salmonella_phage	1.1e-28	89.4
WP_052935634.1\|2909814_2910042_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	2.3e-27	90.7
WP_052935633.1\|2910041_2910269_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	4.8e-25	70.7
WP_071940768.1\|2910265_2910574_+	DUF3850 domain-containing protein	A0A1S6KVH3	Escherichia_phage	1.6e-07	43.2
WP_052935632.1\|2910587_2912828_+	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	92.5
WP_071940803.1\|2912971_2913154_+	Tum protein	A0A218M4I0	Erwinia_phage	3.2e-16	75.9
WP_071940769.1\|2913442_2914660_+	acyltransferase	A0A2H4IZR3	uncultured_Caudovirales_phage	4.4e-32	29.6
WP_052935790.1\|2915126_2916164_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	5.9e-163	79.0
WP_052935789.1\|2916163_2917933_-\|terminase	terminase ATPase subunit family protein	A0A0M4RE51	Salmonella_phage	1.9e-286	80.5
WP_052935788.1\|2918097_2918961_+\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	3.4e-103	66.2
WP_052935787.1\|2918982_2920143_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	2.5e-130	63.1
WP_052935786.1\|2920146_2920905_+\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	1.3e-79	66.3
WP_000177981.1\|2921002_2921503_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	2.9e-59	68.5
WP_001100637.1\|2921502_2921706_+\|tail	tail protein X	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
WP_000524754.1\|2921696_2921918_+	hypothetical protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
WP_000534554.1\|2921901_2922411_+	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
WP_001298859.1\|2922715_2924257_+\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001016257.1\|2924271_2925018_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_052935784.1\|2925515_2925983_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	1.7e-56	69.7
WP_052935783.1\|2925975_2926425_+	phage virion morphogenesis protein	O80313	Escherichia_phage	8.5e-50	72.7
WP_071940771.1\|2926430_2927516_-	hypothetical protein	NA	NA	NA	NA
WP_052935607.1\|2927631_2928273_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	1.5e-95	83.1
WP_052935606.1\|2928269_2928617_+	GPW/gp25 family protein	A0A0F7LDQ1	Escherichia_phage	4.3e-41	71.3
WP_052935605.1\|2928621_2929530_+\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	3.0e-134	81.5
WP_052935604.1\|2929522_2930134_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	1.8e-95	83.1
WP_052935603.1\|2931302_2931716_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	4.0e-22	45.7
WP_052935602.1\|2931847_2933035_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	2.6e-183	80.5
WP_052935601.1\|2933047_2933566_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	2.0e-71	75.6
WP_023223220.1\|2933628_2933910_+\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	4.7e-30	79.1
WP_000763326.1\|2933942_2934062_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	3.7e-13	84.6
WP_052935600.1\|2934054_2936484_+\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	7.6e-270	67.8
WP_052935599.1\|2936495_2936960_+\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	1.7e-61	74.8
WP_052935598.1\|2936962_2938156_+	phage late control D family protein	Q6K1G4	Salmonella_virus	1.3e-166	78.4
2937402:2937417	attR	NA	NA	NA	NA
WP_023223216.1\|2938195_2938414_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	4.6e-33	86.1
WP_001521106.1\|2939206_2941459_+	alpha-amylase	NA	NA	NA	NA
WP_001521107.1\|2941795_2942773_+	carbon starvation induced protein CsiD	NA	NA	NA	NA
WP_020233013.1\|2942792_2944061_+	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_000772878.1\|2944083_2945532_+	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000097652.1\|2945545_2946826_+	4-aminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	2.1e-32	29.9
WP_001295173.1\|2947063_2948464_+	GABA permease	NA	NA	NA	NA
WP_000156814.1\|2948484_2949147_+	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA
WP_000522417.1\|2949147_2949597_-	potassium binding protein Kbp	A0A090DBR9	Clostridium_phage	2.6e-06	39.5
WP_000508177.1\|2949680_2949839_-	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
WP_000137280.1\|2950021_2950321_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001229454.1\|2950330_2950855_+	thiosulfate sulfurtransferase YgaP	NA	NA	NA	NA
WP_000115383.1\|2950901_2951306_-	DNA-binding protein StpA	NA	NA	NA	NA
WP_000492658.1\|2951972_2952422_+	L-alanine exporter AlaE	NA	NA	NA	NA
WP_000281320.1\|2952458_2952803_-	YgaC family protein	NA	NA	NA	NA
WP_001316582.1\|2952954_2953284_+	DUF883 domain-containing protein	NA	NA	NA	NA
WP_001223227.1\|2953531_2953777_+	glutaredoxin-like protein NrdH	Q5K5J3	Oenococcus_phage	1.8e-06	35.3
WP_001521113.1\|2953773_2954175_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	3.4e-18	44.4
WP_020233016.1\|2954156_2956301_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	2.2e-196	48.5
WP_001521117.1\|2956310_2957270_+	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	7.0e-134	71.8
WP_000985494.1\|2957626_2958829_+	glycine betaine/L-proline ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	4.9e-28	39.4
WP_000774965.1\|2958821_2959886_+	glycine betaine/L-proline ABC transporter permease ProW	NA	NA	NA	NA
WP_001216531.1\|2959943_2960936_+	glycine betaine/L-proline ABC transporter substrate-binding protein ProX	NA	NA	NA	NA
WP_000165699.1\|2961388_2962573_+	MFS transporter	NA	NA	NA	NA
WP_000445658.1\|2962696_2963434_+	L-valine exporter subunit YgaZ	NA	NA	NA	NA
WP_000119745.1\|2963423_2963759_+	L-valine transporter subunit YgaH	NA	NA	NA	NA
WP_000378442.1\|2963849_2964380_+	multidrug efflux transporter EmrAB transcriptional repressor EmrR	NA	NA	NA	NA
WP_020233875.1\|2964506_2965679_+	multidrug efflux MFS transporter periplasmic adaptor subunit EmrA	NA	NA	NA	NA
WP_001295176.1\|2965695_2967234_+	multidrug efflux MFS transporter permease subunit EmrB	NA	NA	NA	NA
WP_001130211.1\|2967297_2967813_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_001521120.1\|2967962_2969519_-	glutamate--cysteine ligase	NA	NA	NA	NA
WP_001287454.1\|2969591_2970020_-	DedA family protein	NA	NA	NA	NA
WP_001521122.1\|2970016_2970583_-	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	NA	NA	NA
WP_000906486.1\|2971874_2972060_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	4.9e-12	66.7
WP_000047170.1\|2972294_2974925_-\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	5.5e-80	38.6

DBSCAN-SWA_7

3011226 : 3018366

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071940772.1\|3011226_3013788_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	4.6e-31	20.7
WP_001141345.1\|3013893_3014550_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	5.0e-51	47.0
WP_001295181.1\|3014600_3015368_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.5e-70	56.7
WP_000847993.1\|3015563_3016472_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.1e-117	76.5
WP_001521147.1\|3016468_3017731_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_001278994.1\|3017727_3018366_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_8

3999879 : 4010469

Enterobacteria_phage(88.89%)

integrase

attL 3999697:3999719|attR 4010946:4010968

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3999697:3999719	attL	NA	NA	NA	NA
WP_001218984.1\|3999879_4001043_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.9e-203	88.9
WP_000220867.1\|4001052_4002924_+	DEAD/DEAH box helicase family protein	A0A097BY72	Enterococcus_phage	5.3e-13	21.7
WP_000611230.1\|4002920_4003343_+	hypothetical protein	NA	NA	NA	NA
WP_071940786.1\|4003653_4004226_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	5.5e-94	95.7
WP_000638635.1\|4004299_4004800_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_001283007.1\|4004796_4005531_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	2.3e-129	98.8
WP_001149160.1\|4006083_4006350_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_071940787.1\|4006346_4006937_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.2e-59	89.6
WP_001244665.1\|4006929_4007217_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
WP_000459301.1\|4007209_4007665_+	hypothetical protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
WP_000856729.1\|4007800_4008121_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_071940788.1\|4008135_4010469_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	98.8
4010946:4010968	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4643683 : 4698416

Enterobacteria_phage(26.32%)

tRNA,protease,transposase,integrase,holin

attL 4652607:4652622|attR 4680510:4680525

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162184.1\|4643683_4645036_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_001232255.1\|4645090_4645477_+	cytochrome b562	NA	NA	NA	NA
WP_001106227.1\|4645521_4645986_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	H6WXC9	Vibrio_phage	1.2e-51	59.1
WP_000187791.1\|4646145_4648284_-	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	9.1e-267	64.6
WP_001333756.1\|4648677_4650333_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_001299664.1\|4650382_4651804_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_001181324.1\|4651922_4652870_-	HTH-type transcriptional regulator TreR	C6ZCU4	Enterobacteria_phage	7.9e-13	21.8
4652607:4652622	attL	NA	NA	NA	NA
WP_001387276.1\|4653054_4653108_+	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA
WP_000471866.1\|4653248_4655945_+	magnesium-translocating P-type ATPase	M1HLC0	Paramecium_bursaria_Chlorella_virus	9.0e-46	27.4
WP_024176429.1\|4656150_4656537_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_000148581.1\|4656609_4657071_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_000013049.1\|4657083_4658019_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	1.3e-52	40.5
WP_001296693.1\|4658022_4658157_-	pyr operon leader peptide	NA	NA	NA	NA
WP_000230272.1\|4658437_4658833_-	RidA family protein	NA	NA	NA	NA
WP_000500681.1\|4658963_4659677_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000256665.1\|4659747_4660341_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001333754.1\|4660485_4660938_+	toxin-antitoxin biofilm protein TabA	NA	NA	NA	NA
WP_000012906.1\|4662878_4663883_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_000002954.1\|4664044_4664461_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_001333751.1\|4664506_4665010_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001014711.1\|4665202_4666390_+	DUF898 family protein	NA	NA	NA	NA
WP_000416404.1\|4666441_4669297_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.3e-140	36.7
WP_000786399.1\|4669296_4669740_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_000397144.1\|4670093_4671605_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
WP_000584114.1\|4671871_4672972_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_001295681.1\|4672971_4674054_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_001294554.1\|4674214_4675717_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	1.4e-83	44.6
WP_001299662.1\|4675844_4676864_-	NADPH-dependent aldehyde reductase Ahr	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	8.4e-45	30.7
WP_000772653.1\|4677308_4678571_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.4e-65	35.6
WP_001066505.1\|4678600_4679239_+	hypothetical protein	NA	NA	NA	NA
WP_000455467.1\|4679616_4679847_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000235891.1\|4679943_4680129_-	hypothetical protein	NA	NA	NA	NA
WP_001118612.1\|4680316_4680493_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.2e-05	55.6
WP_001246998.1\|4680485_4680845_+	hypothetical protein	NA	NA	NA	NA
4680510:4680525	attR	NA	NA	NA	NA
WP_001027153.1\|4680876_4681161_+	hypothetical protein	NA	NA	NA	NA
WP_001075579.1\|4681157_4681541_+	DUF5375 family protein	NA	NA	NA	NA
WP_000155331.1\|4681537_4684210_+	TOPRIM and DUF927 domain-containing protein	A0A1B0VP75	Pseudomonas_phage	4.1e-59	34.6
WP_001066218.1\|4684610_4685354_+	septation initiation protein	NA	NA	NA	NA
WP_000126947.1\|4685350_4685902_+	Polarity suppression protein	NA	NA	NA	NA
WP_001185344.1\|4685907_4686180_+	ogr/Delta-like zinc finger family protein	A0A2I8TV89	Erwinia_phage	6.3e-08	44.9
WP_000993028.1\|4686825_4687794_+	hypothetical protein	NA	NA	NA	NA
WP_000422112.1\|4687795_4688728_+	RNA-directed DNA polymerase	Q7M2A9	Enterobacteria_phage	1.8e-25	29.4
WP_139371347.1\|4690326_4691540_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.9e-169	99.7
WP_049828170.1\|4691618_4692008_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.9e-61	99.2
WP_000145481.1\|4692058_4692277_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_087920712.1\|4692343_4693505_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.0e-50	40.2
WP_000625669.1\|4693785_4695063_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_001293435.1\|4695125_4697123_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9
WP_000088357.1\|4697276_4698416_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.5e-68	45.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP018110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5003 : 44114

Escherichia_phage(30.0%)

transposase,integrase

attL 12738:12753|attR 49339:49354

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|5003_5708_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_170386723.1\|6342_7314_+\|transposase	IS30-like element ISApl1 family transposase	W5R8L2	Staphylococcus_phage	2.3e-52	39.1
WP_032492330.1\|7490_8351_+	class A broad-spectrum beta-lactamase TEM-57	Q1MVP3	Enterobacteria_phage	3.9e-160	99.7
WP_001214976.1\|9526_9934_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|10071_10956_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|10987_12187_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000164043.1\|12292_12943_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
12738:12753	attL	NA	NA	NA	NA
WP_000844627.1\|12974_13217_-\|transposase	transposase	NA	NA	NA	NA
WP_001138014.1\|13274_16241_-\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_001161490.1\|16244_16805_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_000993264.1\|16980_17181_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|17246_17951_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_149025460.1\|17841_18126_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_071940805.1\|18158_18461_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_071940806.1\|18831_19062_+	hypothetical protein	NA	NA	NA	NA
WP_014325825.1\|19190_20096_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(42)	NA	NA	NA	NA
WP_001120888.1\|20545_22039_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_071940807.1\|22069_22954_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_023300759.1\|23170_24385_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	5.5e-19	28.7
WP_001255015.1\|24412_24718_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004202492.1\|26245_26587_-	RamA family antibiotic efflux transcriptional regulator	D0R0F8	Streptococcus_phage	2.0e-06	29.8
WP_001067855.1\|27768_28473_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001175594.1\|29006_29330_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_044502555.1\|29434_30472_+	permease	NA	NA	NA	NA
WP_000521603.1\|30764_31382_-	hypothetical protein	NA	NA	NA	NA
WP_000818556.1\|31573_33130_-	AAA family ATPase	NA	NA	NA	NA
WP_000194575.1\|33392_33983_-	hypothetical protein	NA	NA	NA	NA
WP_000343085.1\|33982_34240_-	hypothetical protein	NA	NA	NA	NA
WP_000350638.1\|34593_36732_+	AAA family ATPase	NA	NA	NA	NA
WP_001044768.1\|36893_37310_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_001261287.1\|37306_37537_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_000111771.1\|37832_38123_+	hypothetical protein	NA	NA	NA	NA
WP_000963206.1\|38112_39012_+	nucleotide-binding protein	NA	NA	NA	NA
WP_000698737.1\|39061_41287_-	phage T7 exclusion protein	NA	NA	NA	NA
WP_000952217.1\|41288_42377_-	transcriptional repressor PifC	NA	NA	NA	NA
WP_000465036.1\|42919_43333_+	hypothetical protein	NA	NA	NA	NA
WP_001164198.1\|43334_44114_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	4.0e-55	95.6
49339:49354	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP018112

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

7521 : 13976

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071940821.1\|7521_8730_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	2.0e-207	92.5
WP_000545938.1\|9246_9525_+	hypothetical protein	NA	NA	NA	NA
WP_071940830.1\|9786_11013_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	O80301	Enterobacteria_phage	2.8e-188	95.1
WP_053001740.1\|11071_11476_+\|transposase	IS200/IS605 family transposase	I4AZM1	Saccharomonospora_phage	5.0e-33	54.4
WP_000681608.1\|11761_12028_+	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	8.9e-15	47.4
WP_001481829.1\|12134_12317_-	hypothetical protein	NA	NA	NA	NA
WP_000833470.1\|12874_13057_+	type II toxin-antitoxin system HicA family toxin	NA	NA	NA	NA
WP_000466318.1\|13081_13519_+	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	9.5e-14	34.7
WP_000206701.1\|13649_13976_-	hypothetical protein	A0A0N7KZV3	Escherichia_phage	2.4e-25	90.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018111

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018109

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP018110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP018112

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection