CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Prophage number
NZ_CP013199	Spiroplasma citri strain R8-A2 plasmid pSCI15, complete sequence	0 crisprs	NA	0	0
NZ_CP013197	Spiroplasma citri strain R8-A2 chromosome, complete genome	1 crisprs	cas4	3	20
NZ_CP013198	Spiroplasma citri strain R8-A2 plasmid pSCI26, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013197_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013197_1

374129-374382

Orphan

Consensus_repeat	Method
ACAATATCAACAACAAAATG	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP013197_1

>merge|NZ_CP013197|1|374129-374382|PILER-CR
ACAATATCAACAACAGAATGGTAATAAGCAAAATTATAATCCGCTTAGTACTAACCAAGGGGCTCAACCATCACAACAATATCAACAACAAAATTTAATGCAACGTCCACCTCAGAATATTGGACCACAGCAATTTAATCAACAATCAAATCTTGGCTCACAATATCAACAACAGAATGGTAATAAGCAAAATTATAATCCGCTTAGTACTAACCAAGGGGCTCAACCATCACAACAATATCAACAACAAAATG

>NZ_CP013197|1|1|374129-374382|PILER-CR
ACAATATCAACAACAGAATG	GTAATAAGCAAAATTATAATCCGCTTAGTACTAACCAAGGGGCTCAACCATCACA
ACAATATCAACAACAAAATT	TAATGCAACGTCCACCTCAGAATATTGGACCACAGCAATTTAATCAACAATCAAATCTTGGCTC
ACAATATCAACAACAGAATG	GTAATAAGCAAAATTATAATCCGCTTAGTACTAACCAAGGGGCTCAACCATCACA
ACAATATCAACAACAAAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013197.1\|WP_071937011.1\|366053_367595_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|184118
NZ_CP013197.1\|WP_071937019.1\|375836_377414_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|293734
NZ_CP013197.1\|WP_071937021.1\|380010_380295_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013197.1\|WP_071937020.1\|377542_378502_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP013197.1\|WP_071937026.1\|381893_382319_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
NZ_CP013197.1\|WP_147076818.1\|379645_379819_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|366316
NZ_CP013197.1\|WP_071937027.1\|382318_382561_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|366316
NZ_CP013197.1\|WP_071937010.1\|362534_365276_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013197.1\|WP_071937013.1\|369711_369957_-\|ferredoxin	unknown	unknown	gnl\|CDD\|379145
NZ_CP013197.1\|WP_004028503.1\|365371_366040_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274754
NZ_CP013197.1\|WP_071937017.1\|372767_373778_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223318
NZ_CP013197.1\|WP_071937024.1\|380594_381266_-\|ERF-family-protein	unknown	unknown	gnl\|CDD\|377346
NZ_CP013197.1\|WP_071937025.1\|381249_381903_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013197.1\|WP_071937015.1\|370770_371439_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|223360
NZ_CP013197.1\|WP_071937012.1\|367621_369181_+\|two-component-regulator-system-yiem-receptor-component-protein	unknown	unknown	gnl\|CDD\|236815
NZ_CP013197.1\|WP_071937022.1\|380249_380444_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013197.1\|WP_071937016.1\|371439_372756_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|234628
NZ_CP013197.1\|WP_071937028.1\|382607_382871_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213790
NZ_CP013197.1\|WP_071937009.1\|361771_362485_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013197.1\|WP_071937014.1\|370052_370754_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP013197.1\|WP_071937011.1\|366053_367595_+\|AAA-family-ATPase	gnl\|CDD\|184118	PRK13531, PRK13531, regulatory ATPase RavA; Provisional.	7.07085e-112
NZ_CP013197.1\|WP_071937019.1\|375836_377414_+\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|293734	cd16010, iPGM, 2 3 bisphosphoglycerate independent phosphoglycerate mutase iPGM. The 2,3-diphosphoglycerate- independent phosphoglycerate mutase (iPGM) catalyzes the interconversion of 3-phosphoglycerate (3PGA) and 2-phosphoglycerate (2PGA). They are the predominant PGM in plants and some other bacteria, including endospore forming Gram-positive bacteria and their close relatives. The two steps catalysis is a phosphatase reaction removing the phosphate from 2- or 3-phosphoglycerate, generating an enzyme-bound phosphoserine intermediate, followed by a phosphotransferase reaction as the phosphate is transferred from the enzyme back to the glycerate moiety. The iPGM exists as a dimer, each monomer binding 2 magnesium atoms, which are essential for enzymatic activity.	0
NZ_CP013197.1\|WP_071937016.1\|371439_372756_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|234628	PRK00093, PRK00093, GTP-binding protein Der; Reviewed.	0
NZ_CP013197.1\|WP_071937026.1\|381893_382319_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	4.39117e-25
NZ_CP013197.1\|WP_147076818.1\|379645_379819_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|366316	pfam00805, Pentapeptide, Pentapeptide repeats (8 copies). These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.	0.000114794
NZ_CP013197.1\|WP_071937027.1\|382318_382561_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|366316	pfam00805, Pentapeptide, Pentapeptide repeats (8 copies). These repeats are found in many cyanobacterial proteins. The repeats were first identified in hglK. The function of these repeats is unknown. The structure of this repeat has been predicted to be a beta-helix. The repeat can be approximately described as A(D/N)LXX, where X can be any amino acid.	3.2386e-07
NZ_CP013197.1\|WP_071937013.1\|369711_369957_-\|ferredoxin	gnl\|CDD\|379145	pfam13370, Fer4_13, 4Fe-4S single cluster domain of Ferredoxin I. Fer4_13 is a ferredoxin I from sulfate-reducing bacteria. Chemical sequence analysis suggests that this characteristic [4Fe-4S] cluster sulfur environment is widely distributed among ferredoxins.	4.30251e-06
NZ_CP013197.1\|WP_004028503.1\|365371_366040_+\|hypothetical-protein	gnl\|CDD\|274754	TIGR03732, lanti_perm_MutE, lantibiotic protection ABC transporter permease subunit, MutE/EpiE family. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family is largely restricted to gallidermin-family lantibiotic cassettes, but also include orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. In most species, this subunit is paralogous to an adjacent gene, modeled separately.	0.000869142
NZ_CP013197.1\|WP_071937017.1\|372767_373778_+\|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|223318	COG0240, GpsA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	2.8835e-108
NZ_CP013197.1\|WP_071937015.1\|370770_371439_+\|(d)CMP-kinase	gnl\|CDD\|223360	COG0283, Cmk, Cytidylate kinase [Nucleotide transport and metabolism].	5.95487e-79
NZ_CP013197.1\|WP_071937012.1\|367621_369181_+\|two-component-regulator-system-yiem-receptor-component-protein	gnl\|CDD\|236815	PRK10997, yieM, ATPase RavA stimulator ViaA.	1.33626e-67
NZ_CP013197.1\|WP_071937020.1\|377542_378502_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	0.00115888
NZ_CP013197.1\|WP_071937028.1\|382607_382871_-\|hypothetical-protein	gnl\|CDD\|213790	TIGR03284, thym_sym, thymidylate synthase. Members of this protein family are thymidylate synthase, an enzyme that produces dTMP from dUMP. In prokaryotes, its gene usually is found close to that for dihydrofolate reductase, and in some systems the two enzymes are found as a fusion protein. This model excludes a set of related proteins (TIGR03283) that appears to replace this family in archaeal methanogens, where tetrahydrofolate is replaced by tetrahydromethanopterin. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	0.00266409
NZ_CP013197.1\|WP_071937024.1\|380594_381266_-\|ERF-family-protein	gnl\|CDD\|377346	pfam04404, ERF, ERF superfamily. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to ERF.	1.29285e-10

>NZ_CP013197.1|WP_071937017.1|372767_373778_+|NAD(P)H-dependent-glycerol-3-phosphate-dehydrogenase
MMKKTQKNITIIGTGAYGTVLANVLTDNDHNVIMYGINNKEVDDINNAHLNRHFFGNLKINKEIKATTNFAEAVEDAEYIILGIPVVAIKLIIEKINKTVTKPVVIINVAKGLDPDTHEVLSKSIIKLVNPKILKEYAGIYGPSIAKEVLQRKPTCIMAVSQDFAIAQEVRELFNNEYFVTFANTDVIGTEYAVALKNALAIASGIFNGLYESDNAKASLITMGLNEIQLFAKTKGAQIETFFNFAGLADLILTATSSKSRNYSLGFEIAQVDNAQKVLSEQVKTVEGVLTCKTIVLDARANNITLPLFEALYDILYHNKRPSVIINNVFTKAILS
>NZ_CP013197.1|WP_071937016.1|371439_372756_+|ribosome-biogenesis-GTPase-Der
MAQKGTVAIVGRPNVGKSTLFNRIIKNRLAIVEDTPGVTRDRIYAFSEWLTREFLIIDTGGITLNNTAMFAQEIKMQAEIAIAEADIIIFVLSYKEGITPDDEMVAKILYRSKKPVLLVINKYDKQEKESELFEYMTLGFGEPIAVSATHGIGIGDLLDQVISYLDQIPIQPKTEGIHFSLIGKPNVGKSSLTNAILGEERVIVSPIAGTTTDSIDTSFKRNNQLYTVIDTAGIRRKGKVYEKLEKYSVLRAVSAIKRSDLVLLIIDGTVPITDQDTNIAGITFEQNKPIILVVNKWDAVMEKDERSMKKIEQSIRGYFKYLNYAKMVFVSALEKKRLHILFQTIDEVYAGLTQRVKTSILNEILVKAQLLNPPPDFNGGRLKIYYATQPEGIIPTFIMFCNNPKYLHFSYKRFLENQLREYFGFEGVPIKILFRERK
>NZ_CP013197.1|WP_071937015.1|370770_371439_+|(d)CMP-kinase
MKINIAIDGPAGSGKSSAGYELAKKLNYQFIDTGLTYRAFTYFCVKVGVDFTNHHQLQAQLANFKYQVINNHVYVNNEDITYKLQTNLVLDNINKITGLDFIRAAMVCLQRKLVVKKGNVVVGRDITTVVLPDAEVKIYLTASITARANRRWNQNQENNIVPNNLAEIKVKLKERDYVDTTRAVGPLKIAPDAVVVDSSKLTFEQTVTKIYQVICNYKKAGK
>NZ_CP013197.1|WP_071937014.1|370052_370754_+|hypothetical-protein
METRMEKFAQLREMIKKEIEIDQEINQTSQVINSYMAKLNAIDDNFFGGVKSNFEQEFSWEKVYLDKNPDEQPYPSDFKYDLQQLLEQVVNTTKATIQTNQKNDQDAGDIMHNILIAETLLNKPTYQKYQAILESILAEKIIYHRVSDKIKAENSNFKINSANIEFSTIAHMRKNDQRSTAEMLKESSALLEEKHNNVLVVYRKIKPGYKMLFSTMVLLVVLLAICLVLIFML
>NZ_CP013197.1|WP_071937013.1|369711_369957_-|ferredoxin
MANRDISKKRTYVNTDLCISCGSCIMIDETETFFMDDDGFANTIDNEKELVEAQMVCPTAAIFIKTLEEFKENRKSSLDTN
>NZ_CP013197.1|WP_071937012.1|367621_369181_+|two-component-regulator-system-yiem-receptor-component-protein
MNPYLEQKAGVQLANKLTALKNRDLVNPKFALMKTTNRWLSEMFDQAVNNFYDHQIENEIMKIKLDSNIEKEIYLFHWIKVNGYDGLKKNYASTQDFLFKVNSPFYDRLNYYRYEFNKKQNNNTNMLFRDFIGIWESILIKRINDYRFAKIEELRTKFMQDLYNKVEIYNKANSLLKTVWNFFGKIWNPTELKKGVNMSAIDKFAKFLETNPAIMEIATLLGRFQGESNLIEQRILEEIVMDYEWKPIGSSPEEIIGATESKDLEHMFAAELVLLKDPVLKYIFYKKYIEGKLTTFEFLSQDKVPKEQIKLRTIETYVPEEKGPIILSIDTSSSMRGSPEQIAKALALAIAKIALGEHRPCYMINFSKSLDVYNLSSLKDSLPKLIEFLSKSFAGDTNVEPALEHTLTVMDSNEYFNADLLLISDFLTSDLSPELITKINLLKQRRNRFHAIVIGTMGAENVETIFNNAWIYDPRDPFASELIIASLTGQIVKKYDKVSGAKAILGRMITAKEISKNVK
>NZ_CP013197.1|WP_071937011.1|366053_367595_+|AAA-family-ATPase
MMTLTERLEELTKQLQQNVYEKEEIFNLAMLAMLSGESIFLLGKPGIAKSLVSRRLKHAFKNGTIFEYLMNRFSTPEEIFGPISIEDLQKGVYKRLIDKYLPTAEIVFLDEIWKAGPSIQNTLLTIINEKIFRNAGVDIKVPMKLLISASNELPAEGQGLEALYDRFIIRYIAQGLKDEENFNEMIAGVTELDVKVDEALQITHEEYDVWRKEINKIKITSVTFDFISRFRKAMYIATEGEYYISDRRWKKIAHLMKASAFYNGRDTVDKVDWLVIPYCIWDDEQQQEEYNAIFNEFYLDALTYDVREKKNRLSKELEELSAQYEDIQEVNSRKSEYLDVFDGKLQGTFHRIFWKNQQYPICFIRVEDFIDARHNKTQPTLIELYYGEDLDNMADVLQTEISYVNDSTFKIIKTNEEIKIEIKNSKVDNNSKVEKRILAIEREIDSLTTAFPDEKERLLSLNCLFFKERFTLAVNNAFSDSKLNFNEDGLELEHFSIPEQKISNNNFEQSTKN
>NZ_CP013197.1|WP_004028503.1|365371_366040_+|hypothetical-protein
MFKNKPTYGSKFPDLELLDTEEERRKYEEEVKELSKQEQKRFSYLSPTQHNDFSQRRMFWDSPLERVGRSFIIFGQLIAIVLAYFIGQKAILVALSNYLDPNIKVFAELYVKDLLSYGFLFLSLLFSLLYFIPMAMARTAGAIYGWGIAYIMLAILYFLFVEILCAILLILGSIKGNPAEPINIWLLVFIVLVLIITSIWIIGACLLIVKSDDVKRRINLEI
>NZ_CP013197.1|WP_071937010.1|362534_365276_+|hypothetical-protein
MNKEDNNNNVVEVTIQPVRRKISRKTNLNLFAIIAIIAIIAGLGGVIYSIIAVSFYHNKNPWANAILLDDKITKMVNSQLSKTLVDSNGVAKPENLTSYVQFNVGEKDGIDIYANLTNIQIIQDIFAKSNWIEDNLSIVETMLKGTGASLSGTKVIYQNNILNLVLRPKILSYPYNDGDDKYGLVTVVPVDSQQGLFTYKVRFLLQLIATDFAGYYIDLKKTFDYTYDTVEGVYPVALTLSQLLNLISNQKIINLVQKYNIRLDSGNELILNSLLSEYYPIAKPDNSIFINEEIVNKDGVSFAPIIWTPSASDLTLNIKYDFKKFSSLQQFGANLFNYHDKNYSAIANIFTKIGITMPTFENVKNSYDLYDRNSENTFLTDAMIDQRVNSYRGFVKEMGVDSDNIADNFNYVTNDNSQYVWGSEHQIFYNEVKIKFLNINNNLGNNIYRSPTKIYYDQQRYTNTSINFQDFDLAANVKNVIEKVQYDDSESEIDRRLTNQSGVIKANLKDYLLKQLNNPDIKIDNIVKEITVGVTHNASTIEETVFAKQVPINETLRGNNNKVYQDKLLTLPKIDITVRFSYDGTNSNTYNLSYQYDVAPKVVKDWRGVDKNSLNVLQGDFNFSRNYTTLDKITSLENDYRKEIISVANIWENNNPMGAGNGDNNYPVEFSNWNSFAIKLNQINVGRNNNNNLRVGSYNASVTATKESLNYQGTFTTNLIYVKAAPIEHITVQSLFANSSWTQQQAYRQIKTNILNQAAKYGLNLTDRDFSISGISENNVEKLPVGNKEIIITALGNDNVVTGTATINLIVNPVNIRKYDNVLKLGFQKVNHSIGETINIIFAQLQQPIRKDGYNIINPRQYFDVIILTENNRELSANDIFLVEGKYWYYIKVTSFGARYFDGTISNNLIVKK
>NZ_CP013197.1|WP_071937009.1|361771_362485_+|hypothetical-protein
MLTKISSKRDELALQWNTRIEVAARLLVLSFSILGTFMGYFIGAGSAMAYNNIKNLTGVISHRTYELHYIIAGIVGFICAVFFFCFIGLPYLKLKKATSFKSWIIISTIFATIYYTTCFTLAIIFINMFNTINNYFIVGFTLLIICLVVIFSSYFSLWREIKKQWILRKKIEYLADEEQMKKVETKLATLELQREHLVELETIKYNKEKYSLNNLKEKKKHIYVQKPVLEEQEQEEI
>NZ_CP013197.1|WP_071937019.1|375836_377414_+|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MKAKQPILLAILDGWGIAPDSKGNAVTQGHMVNVEKLKTKYPWVSAHAAGEWVGLPEGQMGNSEVGHIHLGAGRIKYESLTLINKTIKDGTFNQNPELLAAINFAKKSNGAFHIMGLFSVGGVHSHLNHIFAAYKLAAQEGIKEIYLHIFGDGRDTKPECIKIYLEQFQQLQNQLKVGEIATIGGRYYAMDRDKKYDRVQIAYDVLVSRKGSEFSDPIEYINREYQAGRNDEFLMPAYNINTPKGYIKSGDGVFFANFRPDRAIAIASALTNPNFPGNEAQTYFMPKLHDIYFVSMMEYAETVASKHVAFKPIKVVNGLGEWLSKKGYRQLRIAETEKIAHVTFFFDGGKDYFKNGLATQAEITLTGASADLIPSPKVATYDLKPEMSAYEITDKLITELNQNEFDVIILNFANCDMVGHTGILPAAIEAVKTIDNCLGKIYTAIQKVNGIMIITADHGNVEIMIDETGGPNKKHTSQLVPIIITKEGLQLRQDNPAIADIAPTILDLLGEGIPPEMTQPSLIIK
>NZ_CP013197.1|WP_071937020.1|377542_378502_+|CPBP-family-intramembrane-metalloprotease
MTNNDNGYNSKKAWYELKPTLVDRAAPFDFNLVKLRNTGYIFLSTAIFAPFFINILISYMFAHNEYVLAGMNFISWIIVGSGSYFVISGAQNEIMRSGAIAFYYFYFIPNIIGLVIGTIANQFDPAVSVKTTINLLASIIAGLVTIFILYRSSPSIFKKIKLTLKQNYKRILVVYTIGIIAIFSIHLFFVYLESLITTTISNNQNNLIVCLDKWWNIVFLFIYTICIAPIVEELATRHGIFSLSGNKWLGFVSSIIFFAGMHVSGTGDWEHIIGYIGASLTLGMLFLIVNGNVTYTIISHAGYNLIVAILMLVAPKFLS
>NZ_CP013197.1|WP_147076818.1|379645_379819_+|pentapeptide-repeat-containing-protein
MKTLHEMIKDLTGIDVEKNKISKYLEYEALDLEDANLRWADLQGAKLWCADLRYADF
>NZ_CP013197.1|WP_071937021.1|380010_380295_+|hypothetical-protein
MSEYKSKYINKTWDEITTSFDWVNCQPIDCRISHHKKHYDLQCLEWAKMYLNLFKDKWNLIASYMEHYKINDILDLASDGWKILQFEKKINQVN
>NZ_CP013197.1|WP_071937022.1|380249_380444_+|hypothetical-protein
MKNITIWEKNKSSKLKYIIAIDPAGIGQTGIIIYNFLKKKIINNITFSSNSEEEAINNMYLIFQ
>NZ_CP013197.1|WP_071937024.1|380594_381266_-|ERF-family-protein
MPQETKTKTLIESIGEIQSDINLFVSKNARNEHNNYNYFTESDLYQTLKPQLHKQGITYTIQTVGEPSFTETQSSKGGKLINYYSKGLLTLYKGSEKLELGIILSAQNSDIAKAIGSALTYGARYWLCKTFGIATDELDPDSTEISKENSNQVIKENNNPNSMSLEHFNNIKNFITNTKIDINIKEEAKKFIKETTSATKLEPVIIKKQSEDFYYQFKERFLK
>NZ_CP013197.1|WP_071937025.1|381249_381903_-|hypothetical-protein
MRLNLKPLYIYNDELHKYSILIPSVSQIVNILLPKDYSQIDDNILKLAQNRGICIHNMIDVWIKNNFDDELIEFIDCEIKSHRELFKNFIKLYQETFKDIKFRHYETEKTLYSPLMCGTTDFIGITTDNEYIMCDWKITSSNEKADIERYIWQLKLYYLLEKNFCIDNKKILMIIINPKLKIVIKEKVNITKQDLEQIKEAILIWQEREEWENATRN
>NZ_CP013197.1|WP_071937026.1|381893_382319_-|single-stranded-DNA-binding-protein
MNQFIAIGRTTKDIEIKRTQNGKEYAMFQLAVTRPHSIQKDTDFIPCQVWNKQANLLQQYCQKGSQIAITGILKSYKDKDNKIQWMVRVYSCQFLQTNNNLKKDTLFEKPQEKIEFNSSDTKELFNNDNQNIGNDEAILWD
>NZ_CP013197.1|WP_071937027.1|382318_382561_-|pentapeptide-repeat-containing-protein
MKTLKDMMKDLTDITVEEQKINEYLEDTDLSCADLSCADLRDANLQGTDLRSADLRCANLKGIKITKQQLEQLTVIEEDE
>NZ_CP013197.1|WP_071937028.1|382607_382871_-|hypothetical-protein
MDLNIEYLMKNKCNIWDYYCSEHYSKVKEDKINNEKSTENKEGCWCSKNECWCCRYRSELCCEDKKIYVIAKCDYCIKTIEKKILFV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP013197_1	1.1\|374149\|55\|NZ_CP013197\|PILER-CR	374149-374203	55	NZ_CP013197.1	373990-374044	0	1.0
NZ_CP013197_1	1.3\|374308\|55\|NZ_CP013197\|PILER-CR	374308-374362	55	NZ_CP013197.1	373990-374044	0	1.0
NZ_CP013197_1	1.2\|374224\|64\|NZ_CP013197\|PILER-CR	374224-374287	64	NZ_CP013197.1	374065-374128	4	0.938

1. spacer 1.1|374149|55|NZ_CP013197|PILER-CR matches to position: 373990-374044, mismatch: 0, identity: 1.0

gtaataagcaaaattataatccgcttagtactaaccaaggggctcaaccatcaca	CRISPR spacer
gtaataagcaaaattataatccgcttagtactaaccaaggggctcaaccatcaca	Protospacer
*******************************************************

2. spacer 1.3|374308|55|NZ_CP013197|PILER-CR matches to position: 373990-374044, mismatch: 0, identity: 1.0

gtaataagcaaaattataatccgcttagtactaaccaaggggctcaaccatcaca	CRISPR spacer
gtaataagcaaaattataatccgcttagtactaaccaaggggctcaaccatcaca	Protospacer
*******************************************************

3. spacer 1.2|374224|64|NZ_CP013197|PILER-CR matches to position: 374065-374128, mismatch: 4, identity: 0.938

taatgcaacgtccacctcagaatattggaccacagcaatttaatcaacaatcaaatcttg	CRISPR spacer
taatgcaacgtccacctcagaatattggaccacagcaatttaatcaacaatcaaatcttg	Protospacer
************************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

105020 : 111133

Spiroplasma_virus(87.5%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071890527.1\|105020_105170_+	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4
WP_071890530.1\|105169_105421_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.2e-31	85.5
WP_071890535.1\|106370_106730_+	hypothetical protein	NA	NA	NA	NA
WP_071890537.1\|106713_107163_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.0e-71	91.3
WP_071890543.1\|107316_107520_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071890544.1\|107519_108533_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	3.4e-171	90.5
WP_015979226.1\|108525_108930_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_015967964.1\|108929_109166_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071890551.1\|109763_110045_-	lipoprotein	NA	NA	NA	NA
WP_071890554.1\|110161_111133_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	8.9e-28	30.9

DBSCAN-SWA_2

235165 : 245562

Spiroplasma_virus(80.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071892007.1\|235165_236074_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	1.8e-43	38.3
WP_071892014.1\|236353_236590_+	hypothetical protein	NA	NA	NA	NA
WP_071892018.1\|237102_237372_+	hypothetical protein	NA	NA	NA	NA
WP_155522075.1\|237377_237527_+	hypothetical protein	NA	NA	NA	NA
WP_015979229.1\|237636_237786_+	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_015979230.1\|237785_238037_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979231.1\|238472_238712_+	hypothetical protein	NA	NA	NA	NA
WP_015979232.1\|239008_239350_+	hypothetical protein	NA	NA	NA	NA
WP_084566904.1\|239342_239783_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	6.8e-68	89.7
WP_071890543.1\|239935_240139_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071890544.1\|240138_241152_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	3.4e-171	90.5
WP_015979226.1\|241144_241549_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_015967964.1\|241548_241785_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071892025.1\|241796_243986_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	83.6
WP_071936912.1\|244587_245562_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.2e-28	31.5

DBSCAN-SWA_3

461976 : 470123

Staphylococcus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937084.1\|461976_462846_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.0e-91	53.2
WP_071937085.1\|462845_463328_+	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	1.6e-22	37.1
WP_071937086.1\|463329_464115_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_071937087.1\|464140_465451_+	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	2.0e-107	49.2
WP_071937088.1\|465551_466313_+	segregation/condensation protein A	NA	NA	NA	NA
WP_004028618.1\|466318_466867_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.7e-15	31.6
WP_071937089.1\|466866_467604_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_004028620.1\|467619_468228_+	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	8.9e-18	35.1
WP_071937090.1\|468330_469524_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.2e-29	34.1
WP_071937091.1\|469559_470123_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	5.5e-22	38.6

DBSCAN-SWA_4

562053 : 599897

Staphylococcus_phage(16.67%)

capsid,head,portal,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157092846.1\|562053_562686_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_071937154.1\|562708_563086_+	hypothetical protein	NA	NA	NA	NA
WP_071937155.1\|563096_564023_+	hypothetical protein	NA	NA	NA	NA
WP_071937156.1\|564039_565230_+	hypothetical protein	NA	NA	NA	NA
WP_071937157.1\|565712_566255_+	Fic family protein	NA	NA	NA	NA
WP_071937158.1\|566792_567224_+	hypothetical protein	NA	NA	NA	NA
WP_071937159.1\|567213_567630_+	hypothetical protein	NA	NA	NA	NA
WP_071937160.1\|567795_568308_+	hypothetical protein	NA	NA	NA	NA
WP_071937161.1\|568398_570051_+	hypothetical protein	NA	NA	NA	NA
WP_053391401.1\|570074_570356_+	hypothetical protein	NA	NA	NA	NA
WP_071937162.1\|570336_570549_+	hypothetical protein	NA	NA	NA	NA
WP_071937163.1\|570587_571121_-	lipoprotein	NA	NA	NA	NA
WP_071937164.1\|571306_571762_+	hypothetical protein	NA	NA	NA	NA
WP_071937165.1\|571962_573285_+	UPF0236 family protein	NA	NA	NA	NA
WP_071937166.1\|573527_575381_+	ABC transporter permease	NA	NA	NA	NA
WP_071937167.1\|575406_576396_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.2e-17	28.5
WP_155522085.1\|576536_576680_+	hypothetical protein	NA	NA	NA	NA
WP_084566875.1\|576719_577316_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_071937168.1\|577778_578162_+	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_071937169.1\|579220_579976_-	UPF0236 family protein	NA	NA	NA	NA
WP_071937170.1\|580166_580556_-	hypothetical protein	NA	NA	NA	NA
WP_071937171.1\|580694_581216_+	lipoprotein	NA	NA	NA	NA
WP_071937172.1\|581252_581465_-	hypothetical protein	NA	NA	NA	NA
WP_071937173.1\|581445_581727_-	hypothetical protein	NA	NA	NA	NA
WP_071937174.1\|581742_583371_-	hypothetical protein	NA	NA	NA	NA
WP_071937175.1\|583385_583988_-	hypothetical protein	NA	NA	NA	NA
WP_071937176.1\|584934_585192_-	hypothetical protein	NA	NA	NA	NA
WP_071937178.1\|585430_585862_-	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_071937179.1\|586201_586576_-	hypothetical protein	NA	NA	NA	NA
WP_071937180.1\|586592_587108_-	DUF4065 domain-containing protein	A7J2B6	Streptococcus_phage	4.3e-05	25.2
WP_071937181.1\|587539_588406_-	hypothetical protein	NA	NA	NA	NA
WP_071937182.1\|588458_588986_-	hypothetical protein	NA	NA	NA	NA
WP_071937183.1\|589003_589930_-	hypothetical protein	NA	NA	NA	NA
WP_071937184.1\|589939_591487_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_071937185.1\|591674_592007_-	hypothetical protein	NA	NA	NA	NA
WP_071937186.1\|591999_592587_-	hypothetical protein	A6M958	Geobacillus_virus	4.5e-19	38.5
WP_071937187.1\|592602_592980_-	hypothetical protein	NA	NA	NA	NA
WP_071937188.1\|592985_593384_-	hypothetical protein	NA	NA	NA	NA
WP_071937189.1\|593394_593721_-	hypothetical protein	NA	NA	NA	NA
WP_071937190.1\|593710_594079_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_164028179.1\|594102_595881_-\|capsid	phage major capsid protein	A0A1W6JQG3	Corynebacterium_phage	3.8e-08	29.1
WP_071937192.1\|595855_597058_-\|portal	phage portal protein	J9QE83	Clostridium_phage	1.0e-25	25.7
WP_071937193.1\|597229_597721_+	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_071937194.1\|597701_598094_+	hypothetical protein	NA	NA	NA	NA
WP_071937195.1\|598193_599897_-\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	7.4e-78	34.1

DBSCAN-SWA_5

745276 : 748872

Spiroplasma_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015967964.1\|745276_745513_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937327.1\|745512_745890_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071937328.1\|745882_746896_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	7.5e-171	90.2
WP_071937329.1\|747089_747293_-	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	1.2e-27	92.5
WP_071937330.1\|747445_747895_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.5e-70	89.9
WP_071937331.1\|747878_748238_-	hypothetical protein	NA	NA	NA	NA
WP_071937332.1\|748620_748872_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.2e-31	86.7

DBSCAN-SWA_6

760586 : 780709

Spiroplasma_virus(95.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937342.1\|760586_760736_+	hypothetical protein	A8RHI0	Spiroplasma_virus	1.1e-09	71.4
WP_071937343.1\|760735_760987_+	hypothetical protein	A8RHI2	Spiroplasma_virus	5.4e-30	86.7
WP_155522075.1\|763360_763510_+	hypothetical protein	NA	NA	NA	NA
WP_015979229.1\|763619_763769_+	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_015979230.1\|763768_764020_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_071937345.1\|764443_764683_+	hypothetical protein	NA	NA	NA	NA
WP_071890535.1\|764948_765308_+	hypothetical protein	NA	NA	NA	NA
WP_071937346.1\|765291_765741_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.9e-71	90.6
WP_071890543.1\|765893_766097_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937347.1\|766096_767110_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	1.9e-169	89.3
WP_071937327.1\|767102_767480_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_015967964.1\|767479_767716_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937348.1\|767727_769887_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	83.3
WP_071937350.1\|772514_772793_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	7.9e-14	51.6
WP_015979229.1\|772902_773052_+	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_015979230.1\|773051_773303_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979231.1\|773726_773966_+	hypothetical protein	NA	NA	NA	NA
WP_015979232.1\|774249_774591_+	hypothetical protein	NA	NA	NA	NA
WP_015979233.1\|774583_775024_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.1e-69	90.4
WP_015979235.1\|775176_775380_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	8.3e-29	94.0
WP_015979225.1\|775379_776393_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	2.3e-172	91.1
WP_015979226.1\|776385_776790_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_071937352.1\|776789_777026_+	hypothetical protein	A8RHK0	Spiroplasma_virus	1.6e-31	97.4
WP_071937353.1\|777037_779209_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	82.4
WP_071937354.1\|779220_779670_-	lipoprotein	NA	NA	NA	NA
WP_071937355.1\|779782_780709_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.9e-27	31.7

DBSCAN-SWA_7

868286 : 878464

Spiroplasma_virus(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_084566885.1\|868286_870224_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.6e-115	41.6
WP_071937452.1\|870348_871152_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_155522119.1\|871901_872051_+	hypothetical protein	NA	NA	NA	NA
WP_071937130.1\|872155_872305_+	hypothetical protein	A8RHI0	Spiroplasma_virus	5.7e-11	75.5
WP_071937454.1\|872304_872556_+	hypothetical protein	A8RHI2	Spiroplasma_virus	4.4e-32	88.0
WP_071890535.1\|873510_873870_+	hypothetical protein	NA	NA	NA	NA
WP_071937455.1\|873853_874303_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	5.7e-70	89.9
WP_071890543.1\|874455_874659_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937347.1\|874658_875672_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	1.9e-169	89.3
WP_071937327.1\|875664_876042_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_015967964.1\|876041_876278_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937456.1\|876289_878464_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	84.5

DBSCAN-SWA_8

888049 : 895791

Spiroplasma_virus(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155522121.1\|888049_888187_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.4e-16	95.6
WP_071937463.1\|888465_888702_+	hypothetical protein	A8RHK0	Spiroplasma_virus	1.6e-31	94.9
WP_071937464.1\|888713_888911_+	hypothetical protein	NA	NA	NA	NA
WP_071937465.1\|889674_889890_-	YneF family protein	NA	NA	NA	NA
WP_071937466.1\|890434_890584_+	hypothetical protein	A8RHI0	Spiroplasma_virus	6.1e-13	79.6
WP_071937359.1\|890583_890835_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	89.2
WP_084566886.1\|891917_892358_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	4.2e-70	88.4
WP_071937469.1\|892510_892714_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_015979226.1\|893721_894126_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_071937470.1\|894125_894362_+	hypothetical protein	A8RHK0	Spiroplasma_virus	1.6e-31	94.9
WP_071937472.1\|895551_895791_+	hypothetical protein	Q9QTI0	Spiroplasma_phage	3.1e-27	88.5

DBSCAN-SWA_9

905441 : 917946

Spiroplasma_virus(66.67%)

integrase,transposase

attL 898286:898301|attR 915169:915184

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
898286:898301	attL	NA	NA	NA	NA
WP_071937482.1\|905441_906527_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A8RHK4	Spiroplasma_virus	2.6e-177	88.6
WP_071937483.1\|906643_907111_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	1.1e-18	44.8
WP_071937484.1\|909276_909513_-	hypothetical protein	A8RHK0	Spiroplasma_virus	2.4e-32	97.4
WP_071937327.1\|909512_909890_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071890543.1\|910896_911100_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937485.1\|911238_911610_-	hypothetical protein	NA	NA	NA	NA
WP_084566887.1\|911634_912048_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	1.4e-62	90.4
WP_071937487.1\|912040_912376_-	hypothetical protein	NA	NA	NA	NA
WP_071937488.1\|912368_912728_-	hypothetical protein	NA	NA	NA	NA
WP_071938058.1\|913091_913283_-	hypothetical protein	A8RHI2	Spiroplasma_virus	3.7e-23	88.9
WP_071937489.1\|913355_913493_-	hypothetical protein	A8RHI0	Spiroplasma_virus	6.4e-09	73.3
WP_071937491.1\|913817_914111_-	recombinase RecT	A0A2H4JCY8	uncultured_Caudovirales_phage	7.3e-10	44.6
WP_071937492.1\|914230_914473_-	hypothetical protein	NA	NA	NA	NA
WP_071937493.1\|914594_915194_-	hypothetical protein	A0A290GJW3	Caldibacillus_phage	4.8e-24	38.1
915169:915184	attR	NA	NA	NA	NA
WP_071937494.1\|915196_915679_-	hypothetical protein	NA	NA	NA	NA
WP_071937495.1\|915949_916534_-	hypothetical protein	NA	NA	NA	NA
WP_155522124.1\|916705_916864_-	hypothetical protein	NA	NA	NA	NA
WP_164023995.1\|916994_917372_-	HNH endonuclease	A0A0K2CYS9	Paenibacillus_phage	5.3e-05	29.5
WP_071937497.1\|917352_917946_-	recombinase RecT	A0A0A7RW37	Clostridium_phage	3.0e-26	44.4

DBSCAN-SWA_10

947514 : 1002733

Tupanvirus(10.0%)

tRNA,capsid,head,portal,protease,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937532.1\|947514_949431_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	5.7e-79	31.4
WP_071937533.1\|949687_951124_-	pyruvate kinase	NA	NA	NA	NA
WP_071937534.1\|951177_952161_-	6-phosphofructokinase	NA	NA	NA	NA
WP_071937535.1\|952311_953037_-	spiralin lipoprotein	NA	NA	NA	NA
WP_071937536.1\|953280_953916_-	hypothetical protein	NA	NA	NA	NA
WP_071937537.1\|953947_954838_-	elongation factor Ts	NA	NA	NA	NA
WP_071937538.1\|954907_955987_-	30S ribosomal protein S2	NA	NA	NA	NA
WP_071937539.1\|956321_957248_-	hypothetical protein	NA	NA	NA	NA
WP_071937540.1\|957338_957680_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_071937541.1\|957777_958677_+	ribonuclease HIII	NA	NA	NA	NA
WP_071937542.1\|958690_959911_-	hypothetical protein	NA	NA	NA	NA
WP_071937543.1\|960008_960509_-	dCMP deaminase family protein	V5LNH9	Emiliania_huxleyi_virus	1.2e-39	53.6
WP_071937544.1\|960496_961879_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_071937545.1\|961885_962806_-	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_071937546.1\|962798_963386_-	signal peptidase II	NA	NA	NA	NA
WP_071937547.1\|963416_966143_-\|tRNA	isoleucine--tRNA ligase	A0A1V0SGW1	Hokovirus	7.7e-61	27.2
WP_071937548.1\|966377_966782_-	hypothetical protein	NA	NA	NA	NA
WP_071937549.1\|967541_967967_-	cell division protein SepF	NA	NA	NA	NA
WP_071937550.1\|967969_969208_-	cell division protein FtsZ	G3MBK4	Bacillus_virus	1.7e-07	27.7
WP_071937551.1\|969244_970591_-	cell division protein FtsA	NA	NA	NA	NA
WP_071937552.1\|970625_971567_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_071938060.1\|971570_972002_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA
WP_004027582.1\|972240_972417_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_071937553.1\|972416_972935_-	hypothetical protein	NA	NA	NA	NA
WP_071937554.1\|973088_973931_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_071937555.1\|974052_976449_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_071937556.1\|976459_977497_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	1.6e-22	30.4
WP_071937557.1\|977800_981001_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_071937558.1\|981459_982782_-	UPF0236 family protein	NA	NA	NA	NA
WP_071937170.1\|982972_983362_-	hypothetical protein	NA	NA	NA	NA
WP_071937559.1\|983500_984025_+	lipoprotein	NA	NA	NA	NA
WP_071937172.1\|984061_984274_-	hypothetical protein	NA	NA	NA	NA
WP_071937173.1\|984254_984536_-	hypothetical protein	NA	NA	NA	NA
WP_071937560.1\|984551_986183_-	hypothetical protein	NA	NA	NA	NA
WP_071937561.1\|986198_986801_-	hypothetical protein	NA	NA	NA	NA
WP_053391404.1\|987727_988150_-	hypothetical protein	NA	NA	NA	NA
WP_071937562.1\|988139_988781_-	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_071937563.1\|989031_989406_-	hypothetical protein	NA	NA	NA	NA
WP_071937564.1\|989422_989938_-	DUF4065 domain-containing protein	A7J2B6	Streptococcus_phage	7.3e-05	24.7
WP_071937565.1\|990361_991813_-	hypothetical protein	NA	NA	NA	NA
WP_071937183.1\|991830_992757_-	hypothetical protein	NA	NA	NA	NA
WP_071937184.1\|992766_994314_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_071937185.1\|994501_994834_-	hypothetical protein	NA	NA	NA	NA
WP_071937186.1\|994826_995414_-	hypothetical protein	A6M958	Geobacillus_virus	4.5e-19	38.5
WP_071937187.1\|995429_995807_-	hypothetical protein	NA	NA	NA	NA
WP_071937188.1\|995812_996211_-	hypothetical protein	NA	NA	NA	NA
WP_071937189.1\|996221_996548_-	hypothetical protein	NA	NA	NA	NA
WP_071937190.1\|996537_996906_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_164028246.1\|996929_998717_-\|capsid	phage major capsid protein	A0A1W6JQG3	Corynebacterium_phage	3.8e-08	29.1
WP_071937192.1\|998691_999894_-\|portal	phage portal protein	J9QE83	Clostridium_phage	1.0e-25	25.7
WP_071937193.1\|1000065_1000557_+	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_071937567.1\|1000537_1000930_+	hypothetical protein	NA	NA	NA	NA
WP_071937117.1\|1001029_1002733_-\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	3.3e-78	34.3

DBSCAN-SWA_11

1022389 : 1030155

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937586.1\|1022389_1022824_+	single-stranded DNA-binding protein	A7DYE1	Streptococcus_phage	3.7e-10	37.6
WP_071937587.1\|1022814_1023057_+	hypothetical protein	NA	NA	NA	NA
WP_071937588.1\|1023176_1024031_+	recombinase RecT	A0A0B5D0I3	Listeria_phage	1.3e-38	43.1
WP_164024015.1\|1024011_1024389_+	HNH endonuclease	A0A1B0YEC6	Lactobacillus_phage	1.6e-12	42.6
WP_155522132.1\|1024372_1024516_+	hypothetical protein	NA	NA	NA	NA
WP_071937570.1\|1024534_1024714_+	hypothetical protein	NA	NA	NA	NA
WP_071937590.1\|1025082_1027464_+	N-6 DNA methylase	A0A1W6JNK1	Staphylococcus_phage	4.8e-67	34.4
WP_071937568.1\|1027943_1028447_+	hypothetical protein	NA	NA	NA	NA
WP_071937591.1\|1028449_1028842_+	hypothetical protein	A0A290GJW3	Caldibacillus_phage	2.5e-13	39.8
WP_071937592.1\|1028913_1030155_+	hypothetical protein	B5WZP1	Staphylococcus_phage	5.1e-52	33.0

DBSCAN-SWA_12

1047617 : 1059540

Spiroplasma_virus(93.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937609.1\|1047617_1047854_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.0e-30	96.2
WP_071937610.1\|1047853_1048249_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	8.3e-41	96.6
WP_071937611.1\|1049253_1049457_-	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	2.4e-28	92.5
WP_071937612.1\|1049609_1050065_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	9.1e-68	87.4
WP_155522119.1\|1050515_1050665_+	hypothetical protein	NA	NA	NA	NA
WP_071937614.1\|1050769_1050919_+	hypothetical protein	A8RHI0	Spiroplasma_virus	5.3e-09	69.4
WP_071937131.1\|1050918_1051170_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	88.0
WP_071937615.1\|1052109_1052391_+	hypothetical protein	A8RHI5	Spiroplasma_virus	2.4e-10	61.3
WP_071937616.1\|1052428_1052878_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	7.9e-72	91.3
WP_071937469.1\|1053030_1053234_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937617.1\|1054241_1054583_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	1.2e-40	97.7
WP_015967964.1\|1054582_1054819_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937618.1\|1054830_1056957_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	84.4
WP_071937619.1\|1056971_1057373_-	lipoprotein	NA	NA	NA	NA
WP_015979228.1\|1057487_1058456_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	3.0e-15	27.4
WP_071937620.1\|1059139_1059391_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_071890527.1\|1059390_1059540_-	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4

DBSCAN-SWA_13

1122057 : 1131557

Spiroplasma_virus(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071890527.1\|1122057_1122207_+	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4
WP_071937670.1\|1122206_1122458_+	hypothetical protein	A8RHI2	Spiroplasma_virus	1.7e-31	86.7
WP_015979231.1\|1122881_1123121_+	hypothetical protein	NA	NA	NA	NA
WP_071937671.1\|1123451_1123811_+	hypothetical protein	NA	NA	NA	NA
WP_015979233.1\|1123803_1124244_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.1e-69	90.4
WP_015979235.1\|1124396_1124600_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	8.3e-29	94.0
WP_071937672.1\|1125604_1125946_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	1.2e-40	96.6
WP_071937673.1\|1125945_1126182_+	hypothetical protein	A8RHK0	Spiroplasma_virus	3.2e-32	96.2
WP_071937674.1\|1126193_1128398_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	85.0
WP_071937675.1\|1128424_1128892_-	DUF3688 family protein	A8RHK2	Spiroplasma_virus	1.9e-12	41.4
WP_071937676.1\|1130404_1130764_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_071937677.1\|1130787_1130982_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_004028189.1\|1131026_1131557_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	9.5e-08	28.5

DBSCAN-SWA_14

1135969 : 1167703

Spiroplasma_phage(100.0%)

head,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937684.1\|1135969_1136260_-	PTS lactose/cellobiose transporter subunit IIA	Q9QTH0	Spiroplasma_phage	3.4e-07	96.3
WP_071937685.1\|1136658_1136841_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	3.7e-20	85.0
WP_071937686.1\|1137180_1137420_-	hypothetical protein	Q3ZVE8	Spiroplasma_phage	7.2e-32	98.7
WP_071937687.1\|1137419_1137710_-	hypothetical protein	Q3ZVE9	Spiroplasma_phage	4.5e-44	95.8
WP_071937688.1\|1138721_1138919_-	hypothetical protein	NA	NA	NA	NA
WP_167693722.1\|1138918_1139083_-	hypothetical protein	Q3ZVF1	Spiroplasma_phage	1.3e-19	92.6
WP_147077751.1\|1139147_1139339_-	hypothetical protein	Q3ZVF2	Spiroplasma_phage	5.6e-27	98.4
WP_155522136.1\|1139425_1139599_-	hypothetical protein	Q3ZVF3	Spiroplasma_phage	1.7e-19	100.0
WP_071937689.1\|1139783_1140053_-	hypothetical protein	Q3ZVF5	Spiroplasma_phage	7.3e-41	94.4
WP_071937690.1\|1140381_1140696_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	2.3e-46	91.3
WP_071937691.1\|1141128_1141632_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.6e-68	80.9
WP_071937692.1\|1141647_1142070_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	2.6e-61	83.0
WP_071937693.1\|1142209_1142488_-	hypothetical protein	NA	NA	NA	NA
WP_071937694.1\|1142612_1143455_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	3.3e-148	92.8
WP_071937695.1\|1143594_1144134_-\|head,protease	HK97 family phage prohead protease	NA	NA	NA	NA
WP_157092873.1\|1144381_1145797_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	9.3e-135	66.6
WP_071937697.1\|1145810_1146047_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	2.3e-30	92.2
WP_071937698.1\|1146402_1147413_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	2.3e-164	91.7
WP_071937699.1\|1147417_1147627_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	2.5e-12	98.6
WP_167693723.1\|1147626_1147785_-	hypothetical protein	Q9QTH0	Spiroplasma_phage	2.3e-18	96.2
WP_071937700.1\|1147847_1148051_-	hypothetical protein	Q9QTH1	Spiroplasma_phage	2.0e-06	71.8
WP_071937701.1\|1148183_1148375_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	6.6e-20	86.4
WP_071937702.1\|1148374_1148602_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	3.2e-29	91.7
WP_167693724.1\|1148707_1148845_-	hypothetical protein	NA	NA	NA	NA
WP_071937703.1\|1148846_1149197_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	5.3e-15	39.0
WP_071937705.1\|1150762_1151284_-	hypothetical protein	NA	NA	NA	NA
WP_157092892.1\|1151490_1152894_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	2.4e-135	65.9
WP_071937706.1\|1154515_1154725_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	1.6e-11	97.1
WP_167693723.1\|1154724_1154883_-	hypothetical protein	Q9QTH0	Spiroplasma_phage	2.3e-18	96.2
WP_071937700.1\|1154945_1155149_-	hypothetical protein	Q9QTH1	Spiroplasma_phage	2.0e-06	71.8
WP_167693724.1\|1155409_1155547_-	hypothetical protein	NA	NA	NA	NA
WP_071937707.1\|1155548_1155899_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	2.4e-15	39.0
WP_071937709.1\|1157536_1157992_-	hypothetical protein	NA	NA	NA	NA
WP_071937710.1\|1158735_1159593_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	2.5e-122	75.2
WP_071937711.1\|1159889_1160105_-	hypothetical protein	NA	NA	NA	NA
WP_071937712.1\|1160793_1161162_-	hypothetical protein	NA	NA	NA	NA
WP_071937713.1\|1161688_1162741_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	4.2e-108	59.8
WP_157092874.1\|1162975_1164379_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	1.9e-135	66.8
WP_071937697.1\|1164392_1164629_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	2.3e-30	92.2
WP_071937715.1\|1164983_1165994_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	6.8e-172	95.8
WP_071937716.1\|1165998_1166208_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	2.8e-11	95.7
WP_167693725.1\|1166207_1166366_-	hypothetical protein	Q9QTH0	Spiroplasma_phage	1.5e-17	94.2
WP_071937717.1\|1166780_1166963_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	2.2e-20	86.7
WP_071937718.1\|1166962_1167190_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	3.8e-30	94.4
WP_071937719.1\|1167388_1167703_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	1.2e-50	96.2

DBSCAN-SWA_15

1174415 : 1195627

Spiroplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937727.1\|1174415_1174853_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	2.9e-55	75.4
WP_071937728.1\|1175212_1175458_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	6.5e-12	52.7
WP_071937712.1\|1175975_1176344_+	hypothetical protein	NA	NA	NA	NA
WP_157092876.1\|1176997_1177174_-	hypothetical protein	NA	NA	NA	NA
WP_071937730.1\|1177404_1178412_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	2.8e-162	85.5
WP_071937731.1\|1178807_1179131_+	hypothetical protein	Q3ZVF6	Spiroplasma_phage	4.1e-46	89.7
WP_071937732.1\|1179132_1179630_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.1e-37	50.3
WP_071937733.1\|1179822_1180050_+	hypothetical protein	Q9QTH4	Spiroplasma_phage	4.9e-30	94.4
WP_071937701.1\|1180049_1180241_+	hypothetical protein	Q9QTH2	Spiroplasma_phage	6.6e-20	86.4
WP_071937734.1\|1180373_1180577_+	hypothetical protein	Q9QTH1	Spiroplasma_phage	5.8e-06	70.4
WP_167693723.1\|1180639_1180798_+	hypothetical protein	Q9QTH0	Spiroplasma_phage	2.3e-18	96.2
WP_071937735.1\|1180797_1181007_+	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	7.2e-12	97.1
WP_071937736.1\|1181011_1182022_+	hypothetical protein	Q9QTG8	Spiroplasma_phage	8.3e-170	94.6
WP_071937737.1\|1182376_1182613_+	hypothetical protein	Q9QTI0	Spiroplasma_phage	1.8e-30	93.5
WP_071937738.1\|1182625_1184029_+	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	5.4e-135	66.5
WP_071937739.1\|1184232_1184961_+	hypothetical protein	NA	NA	NA	NA
WP_071937742.1\|1186597_1186912_+	hypothetical protein	Q3ZVF6	Spiroplasma_phage	1.1e-48	91.3
WP_167693726.1\|1186913_1187054_+	hypothetical protein	NA	NA	NA	NA
WP_071937743.1\|1187037_1187262_+	hypothetical protein	Q9QTH4	Spiroplasma_phage	3.2e-13	57.5
WP_071937744.1\|1187254_1187455_+	hypothetical protein	NA	NA	NA	NA
WP_071937745.1\|1187454_1187637_+	hypothetical protein	Q9QTH2	Spiroplasma_phage	2.6e-21	93.3
WP_071937746.1\|1187768_1187972_+	hypothetical protein	Q3ZVF2	Spiroplasma_phage	1.3e-13	63.9
WP_167693727.1\|1188034_1188193_+	hypothetical protein	Q9QTH0	Spiroplasma_phage	1.5e-17	92.3
WP_071937747.1\|1188192_1188402_+	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	7.2e-12	75.4
WP_071937748.1\|1188406_1189417_+	hypothetical protein	Q9QTG8	Spiroplasma_phage	6.8e-172	95.5
WP_071937750.1\|1189844_1190081_+	hypothetical protein	Q9QTI0	Spiroplasma_phage	5.1e-30	93.5
WP_071937751.1\|1190093_1191497_+	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	1.2e-131	65.1
WP_071937752.1\|1191728_1192268_+	hypothetical protein	NA	NA	NA	NA
WP_071937753.1\|1192501_1192855_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.2e-43	72.6
WP_071937754.1\|1192861_1193485_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	7.8e-86	77.2
WP_071937755.1\|1193875_1194094_+	hypothetical protein	NA	NA	NA	NA
WP_071937756.1\|1194065_1194254_+	hypothetical protein	NA	NA	NA	NA
WP_071937757.1\|1194452_1194680_+	hypothetical protein	Q9QTH4	Spiroplasma_phage	5.4e-29	93.1
WP_071937758.1\|1194679_1194862_+	hypothetical protein	Q9QTH2	Spiroplasma_phage	4.8e-20	85.0
WP_071937759.1\|1194993_1195197_+	hypothetical protein	NA	NA	NA	NA
WP_167693728.1\|1195259_1195418_+	hypothetical protein	Q9QTH0	Spiroplasma_phage	2.3e-18	96.2
WP_071937760.1\|1195417_1195627_+	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	8.0e-11	97.1

DBSCAN-SWA_16

1305110 : 1308930

Spiroplasma_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015967964.1\|1305110_1305347_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937327.1\|1305346_1305724_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071937852.1\|1305716_1306730_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	6.4e-170	89.6
WP_071890543.1\|1306729_1306933_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937853.1\|1307085_1307529_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	1.7e-63	83.9
WP_071937854.1\|1307512_1307872_-	hypothetical protein	NA	NA	NA	NA
WP_071937855.1\|1308529_1308781_-	hypothetical protein	A8RHI2	Spiroplasma_virus	1.2e-32	89.2
WP_071937856.1\|1308780_1308930_-	hypothetical protein	A8RHI0	Spiroplasma_virus	6.3e-10	73.5

DBSCAN-SWA_17

1329503 : 1382824

Spiroplasma_virus(43.75%)

tRNA,capsid,portal,head,transposase,tail,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937867.1\|1329503_1331207_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	1.1e-78	34.2
WP_071937869.1\|1331728_1332931_+\|portal	phage portal protein	J9QE83	Clostridium_phage	1.0e-25	25.7
WP_164028371.1\|1332905_1334693_+\|capsid	phage major capsid protein	A0A1W6JQG3	Corynebacterium_phage	1.1e-07	28.4
WP_071937190.1\|1334716_1335085_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_071937189.1\|1335074_1335401_+	hypothetical protein	NA	NA	NA	NA
WP_071937188.1\|1335411_1335810_+	hypothetical protein	NA	NA	NA	NA
WP_071937187.1\|1335815_1336193_+	hypothetical protein	NA	NA	NA	NA
WP_071937186.1\|1336208_1336796_+	hypothetical protein	A6M958	Geobacillus_virus	4.5e-19	38.5
WP_071937185.1\|1336788_1337121_+	hypothetical protein	NA	NA	NA	NA
WP_071937184.1\|1337308_1338856_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_071937871.1\|1338865_1339792_+	hypothetical protein	NA	NA	NA	NA
WP_071937872.1\|1339809_1341261_+	hypothetical protein	NA	NA	NA	NA
WP_071937180.1\|1341684_1342200_+	DUF4065 domain-containing protein	A7J2B6	Streptococcus_phage	4.3e-05	25.2
WP_071937179.1\|1342216_1342591_+	hypothetical protein	NA	NA	NA	NA
WP_071937873.1\|1342842_1343253_+	hypothetical protein	NA	NA	NA	NA
WP_071937874.1\|1343473_1343929_+	hypothetical protein	NA	NA	NA	NA
WP_071937561.1\|1345139_1345742_+	hypothetical protein	NA	NA	NA	NA
WP_071937875.1\|1345757_1347383_+	hypothetical protein	NA	NA	NA	NA
WP_071937876.1\|1347398_1347680_+	hypothetical protein	NA	NA	NA	NA
WP_071937877.1\|1347660_1347873_+	hypothetical protein	NA	NA	NA	NA
WP_071937878.1\|1347910_1348429_-	lipoprotein	NA	NA	NA	NA
WP_071937170.1\|1348567_1348957_+	hypothetical protein	NA	NA	NA	NA
WP_071937879.1\|1349147_1350470_+	UPF0236 family protein	NA	NA	NA	NA
WP_071937880.1\|1350794_1350989_-	hypothetical protein	NA	NA	NA	NA
WP_071937881.1\|1350982_1352530_-	sodium-dependent transporter	NA	NA	NA	NA
WP_071937882.1\|1352586_1354239_-	hypothetical protein	NA	NA	NA	NA
WP_071937883.1\|1357614_1357980_-	PTS transporter subunit EIIB	NA	NA	NA	NA
WP_071937884.1\|1357982_1358789_-	NAD(+)/NADH kinase	NA	NA	NA	NA
WP_084566915.1\|1358876_1359260_-	hypothetical protein	NA	NA	NA	NA
WP_071937886.1\|1359993_1362411_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	1.1e-271	59.4
WP_071937887.1\|1363223_1363640_+	hypothetical protein	NA	NA	NA	NA
WP_004027799.1\|1364053_1364365_-	thioredoxin	A0A1V0SD63	Indivirus	5.0e-17	41.0
WP_071937888.1\|1364419_1365229_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_071937889.1\|1366715_1367063_-	hypothetical protein	NA	NA	NA	NA
WP_071937782.1\|1368263_1368467_-	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	2.2e-29	94.0
WP_071937891.1\|1369881_1370133_-	hypothetical protein	A8RHI2	Spiroplasma_virus	9.3e-30	86.7
WP_015979229.1\|1370132_1370282_-	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_164023930.1\|1370431_1370611_-	hypothetical protein	NA	NA	NA	NA
WP_071937892.1\|1373010_1373919_+	nicotinamide mononucleotide transporter	A0A2R4AM71	Aeromonas_phage	2.0e-13	28.6
WP_071890527.1\|1374531_1374681_+	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4
WP_071937131.1\|1374680_1374932_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	88.0
WP_071937131.1\|1375404_1375656_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	88.0
WP_071890527.1\|1375655_1375805_-	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4
WP_157092885.1\|1376116_1377268_+	DUF3688 family protein	NA	NA	NA	NA
WP_071937894.1\|1377296_1377815_-	lipoprotein	NA	NA	NA	NA
WP_147077647.1\|1378159_1378339_-	hypothetical protein	NA	NA	NA	NA
WP_071937895.1\|1380861_1381542_-	hypothetical protein	NA	NA	NA	NA
WP_071937896.1\|1381858_1382824_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	6.1e-29	32.1

DBSCAN-SWA_18

1448040 : 1457212

Spiroplasma_virus(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937945.1\|1448040_1448493_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	2.3e-10	41.1
WP_071937946.1\|1450659_1450896_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.9e-32	97.4
WP_071937947.1\|1450895_1451273_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.8e-38	97.6
WP_071937948.1\|1452276_1452480_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	1.3e-29	95.5
WP_084566901.1\|1452632_1453073_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.3e-68	91.1
WP_071937951.1\|1453419_1453659_-	hypothetical protein	NA	NA	NA	NA
WP_015967969.1\|1454137_1454287_-	hypothetical protein	A8RHI0	Spiroplasma_virus	1.2e-13	81.6
WP_071937952.1\|1455787_1457212_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	1.7e-96	39.8

DBSCAN-SWA_19

1485461 : 1493307

Spiroplasma_virus(90.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937971.1\|1485461_1486436_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.0e-28	31.5
WP_071937972.1\|1486552_1487014_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	3.2e-12	43.7
WP_071937973.1\|1487024_1489199_-	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	84.2
WP_015967964.1\|1489210_1489447_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937327.1\|1489446_1489824_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071937974.1\|1489816_1490830_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	2.9e-170	92.3
WP_071890543.1\|1490829_1491033_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937346.1\|1491185_1491635_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.9e-71	90.6
WP_071890535.1\|1491618_1491978_-	hypothetical protein	NA	NA	NA	NA
WP_015979231.1\|1492243_1492483_-	hypothetical protein	NA	NA	NA	NA
WP_015979230.1\|1492906_1493158_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979229.1\|1493157_1493307_-	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4

DBSCAN-SWA_20

1552880 : 1563493

Spiroplasma_virus(90.91%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071936912.1\|1552880_1553855_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.2e-28	31.5
WP_071892025.1\|1554456_1556646_-	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	83.6
WP_015967964.1\|1556657_1556894_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_015979226.1\|1556893_1557298_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_071890544.1\|1557290_1558304_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	3.4e-171	90.5
WP_071890543.1\|1558303_1558507_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_084566904.1\|1558659_1559100_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	6.8e-68	89.7
WP_015979232.1\|1559092_1559434_-	hypothetical protein	NA	NA	NA	NA
WP_015979231.1\|1559730_1559970_-	hypothetical protein	NA	NA	NA	NA
WP_015979230.1\|1560405_1560657_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979229.1\|1560656_1560806_-	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_155522075.1\|1560915_1561065_-	hypothetical protein	NA	NA	NA	NA
WP_071938017.1\|1561367_1561733_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_071938018.1\|1561788_1562280_-	50S ribosomal protein L10	NA	NA	NA	NA
WP_147077704.1\|1563093_1563273_+	hypothetical protein	A8RHI0	Spiroplasma_virus	5.2e-11	73.3
WP_071938019.1\|1563241_1563493_+	hypothetical protein	A8RHI2	Spiroplasma_virus	1.6e-29	85.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013198

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19448 : 23044

Spiroplasma_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937332.1\|19448_19700_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.2e-31	86.7
WP_071937331.1\|20082_20442_+	hypothetical protein	NA	NA	NA	NA
WP_071937330.1\|20425_20875_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.5e-70	89.9
WP_071937329.1\|21027_21231_+	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	1.2e-27	92.5
WP_071937328.1\|21424_22438_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	7.5e-171	90.2
WP_071937327.1\|22430_22808_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_015967964.1\|22807_23044_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013197

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013198

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection