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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017073 Pseudomonas putida strain PP112420, complete genome 1 crisprs DEDDh,cas3,WYL,DinG,csa3,RT,PD-DExK 0 1 7 0

Results visualization

1. NZ_CP017073
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017073_1 3965195-3965268 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017073_1 1.1|3965219|26|NZ_CP017073|CRISPRCasFinder 3965219-3965244 26 NZ_CP017076 Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence 858639-858664 4 0.846
NZ_CP017073_1 1.1|3965219|26|NZ_CP017073|CRISPRCasFinder 3965219-3965244 26 NZ_CP049249 Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence 521250-521275 5 0.808

1. spacer 1.1|3965219|26|NZ_CP017073|CRISPRCasFinder matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 4, identity: 0.846

gtggattgacagtgatcgcacgcagg	CRISPR spacer
ccggattgacagtgatcgcccgcagc	Protospacer
 .***************** ***** 

2. spacer 1.1|3965219|26|NZ_CP017073|CRISPRCasFinder matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 5, identity: 0.808

gtggattgacagtgatcgcacgcagg	CRISPR spacer
gtggattgacagtgatcgcaacaacc	Protospacer
********************   *  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1106622 : 1114401 10 Thermobifida_phage(16.67%) NA NA
DBSCAN-SWA_2 2064864 : 2113271 41 Escherichia_phage(50.0%) protease,integrase,transposase,coat attL 2072119:2072136|attR 2109611:2109628
DBSCAN-SWA_3 3794449 : 3802540 7 Pseudomonas_phage(66.67%) NA NA
DBSCAN-SWA_4 3806143 : 3850889 66 Pseudomonas_phage(52.0%) protease,integrase,terminase attL 3793689:3793748|attR 3846285:3846352
DBSCAN-SWA_5 3887118 : 3895667 10 uncultured_Caudovirales_phage(75.0%) tRNA NA
DBSCAN-SWA_6 5088115 : 5189036 105 Escherichia_phage(13.79%) integrase,transposase attL 5142443:5142502|attR 5158703:5158904
DBSCAN-SWA_7 5453377 : 5462114 7 Agrobacterium_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage