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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP016910 Burkholderia pseudomallei strain Burk178-Type1 chromosome 2, complete sequence 4 crisprs cas3,DinG,csa3 1 1 7 0
NZ_CP016909 Burkholderia pseudomallei strain Burk178-Type1 chromosome 1, complete sequence 1 crisprs cas3,DEDDh,csa3,DinG,RT 0 0 9 0

Results visualization

1. NZ_CP016910
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016910_1 779353-779495 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016910_2 1440479-1440643 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016910_3 2727004-2727096 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016910_4 3134173-3134318 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281812-1281836 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281819-1281843 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281826-1281850 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281833-1281857 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281840-1281864 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281847-1281871 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281854-1281878 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281861-1281885 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281868-1281892 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281875-1281899 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281882-1281906 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281889-1281913 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281896-1281920 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281903-1281927 0 1.0
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281910-1281934 1 0.96
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281917-1281941 1 0.96
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281924-1281948 1 0.96
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281931-1281955 1 0.96
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281938-1281962 1 0.96
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281952-1281976 1 0.96
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281945-1281969 2 0.92
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_CP016909.1 1281959-1281983 2 0.92

1. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281812-1281836, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

2. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281819-1281843, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

3. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281826-1281850, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

4. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281833-1281857, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

5. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281840-1281864, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

6. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281847-1281871, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

7. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281854-1281878, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

8. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281861-1281885, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

9. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281868-1281892, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

10. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281875-1281899, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

11. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281882-1281906, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

12. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281889-1281913, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

13. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281896-1281920, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

14. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281903-1281927, mismatch: 0, identity: 1.0

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccgctaacc	Protospacer
*************************

15. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281910-1281934, mismatch: 1, identity: 0.96

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccactaacc	Protospacer
******************.******

16. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281917-1281941, mismatch: 1, identity: 0.96

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccactaaccgctaacc	Protospacer
***********.*************

17. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281924-1281948, mismatch: 1, identity: 0.96

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccactaaccgctaaccgctaacc	Protospacer
****.********************

18. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281931-1281955, mismatch: 1, identity: 0.96

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccgctaaccactaacc	Protospacer
******************.******

19. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281938-1281962, mismatch: 1, identity: 0.96

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccactaaccgctaacc	Protospacer
***********.*************

20. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281952-1281976, mismatch: 1, identity: 0.96

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccgctaaccactaaccgctaacc	Protospacer
***********.*************

21. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281945-1281969, mismatch: 2, identity: 0.92

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccactaaccgctaaccactaacc	Protospacer
****.*************.******

22. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to position: 1281959-1281983, mismatch: 2, identity: 0.92

aaccgctaaccgctaaccgctaacc	CRISPR spacer
aaccactaaccgctaaccactaacc	Protospacer
****.*************.******

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP016910_1 1.2|779440|25|NZ_CP016910|CRISPRCasFinder 779440-779464 25 NZ_AP017962 Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence 35917-35941 5 0.8

1. spacer 1.2|779440|25|NZ_CP016910|CRISPRCasFinder matches to NZ_AP017962 (Synechococcus sp. NIES-970 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 5, identity: 0.8

aaccgctaaccgctaaccgctaacc	CRISPR spacer
taccgctaaccgcttaccgctacta	Protospacer
 ************* ******* . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 87352 : 151907 46 Leptospira_phage(16.67%) transposase,plate,holin NA
DBSCAN-SWA_2 572982 : 577544 9 Burkholderia_virus(85.71%) transposase,integrase attL 562219:562233|attR 593448:593462
DBSCAN-SWA_3 730173 : 801602 56 Vibrio_phage(33.33%) plate,holin NA
DBSCAN-SWA_4 1427531 : 1533774 107 Burkholderia_virus(46.15%) tail,head,portal,plate,capsid,protease,terminase,holin NA
DBSCAN-SWA_5 2055933 : 2108559 43 Bacillus_virus(16.67%) transposase,plate NA
DBSCAN-SWA_6 2462334 : 2529095 43 Burkholderia_phage(18.18%) tRNA,portal,integrase,transposase,protease attL 2505822:2505837|attR 2530552:2530567
DBSCAN-SWA_7 2860649 : 2917717 32 Ralstonia_phage(22.22%) transposase,plate NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP016909
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP016909_1 4021918-4021997 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 187350 : 193111 7 Burkholderia_virus(28.57%) NA NA
DBSCAN-SWA_2 410075 : 428873 16 Leptospira_phage(25.0%) integrase,transposase,protease,plate attL 414096:414112|attR 424368:424384
DBSCAN-SWA_3 784819 : 794066 7 Hokovirus(16.67%) NA NA
DBSCAN-SWA_4 1135331 : 1144156 9 Bacillus_phage(16.67%) NA NA
DBSCAN-SWA_5 1408926 : 1502188 106 uncultured_Caudovirales_phage(21.74%) protease,capsid,head,terminase,portal,integrase,plate,tail,tRNA attL 1417724:1417742|attR 1475899:1475917
DBSCAN-SWA_6 1705080 : 1709486 9 Burkholderia_virus(57.14%) NA NA
DBSCAN-SWA_7 2559993 : 2628630 95 Burkholderia_virus(88.75%) capsid,head,holin,portal,terminase,integrase,tail attL 2573534:2573582|attR 2628760:2628808
DBSCAN-SWA_8 2993566 : 3027032 34 Pseudomonas_phage(20.0%) protease,capsid,head,terminase,portal,integrase,tail attL 2987970:2987985|attR 3001693:3001708
DBSCAN-SWA_9 3189271 : 3200243 10 Agrobacterium_phage(16.67%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage