CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013319	Vibrio cholerae strain NCTC9420 chromosome 1, complete sequence	0 crisprs	DEDDh,DinG,csa3,cas3,WYL,RT	0	0	5	0
NZ_CP013320	Vibrio cholerae strain NCTC9420 chromosome 2	0 crisprs	DEDDh,RT,csa3,cas3	0	0	0	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

821309 : 828502

Faustovirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000775253.1\|821309_822524_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-32	30.5
WP_000331703.1\|822560_822944_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_000301571.1\|823004_823328_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	3.0e-25	50.5
WP_001105747.1\|823376_823892_+	co-chaperone HscB	NA	NA	NA	NA
WP_071919680.1\|823915_825766_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	2.6e-105	40.9
WP_001124187.1\|825779_826118_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_000872176.1\|826166_826361_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_000107237.1\|826580_827870_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.7e-34	34.3
WP_001162850.1\|828073_828502_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.0e-20	38.4

DBSCAN-SWA_2

1566722 : 1590669

Vibrio_phage(84.62%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149591715.1\|1566722_1568828_-	RTX toxin T1SS ABC transporter subunit RtxB	W8CYL7	Bacillus_phage	4.9e-39	27.1
WP_001906284.1\|1569254_1569602_+	hypothetical protein	NA	NA	NA	NA
WP_001881196.1\|1569627_1570089_+	RTX toxin-activating lysine-acyltransferase RtxC	NA	NA	NA	NA
WP_071919716.1\|1570112_1583750_+	MARTX multifunctional-autoprocessing repeats-in-toxin holotoxin RtxA	B3Y8K3	Vibrio_virus	8.4e-07	100.0
WP_071919717.1\|1584071_1584440_-	hypothetical protein	G8IRV4	Vibrio_phage	3.7e-51	82.6
WP_001900016.1\|1584607_1585162_+	3'-5' exonuclease	W6ASW5	Vibrio_phage	1.4e-49	57.8
WP_000502184.1\|1585171_1585375_+	hypothetical protein	C3W4P3	Vibrio_phage	2.7e-35	100.0
WP_044144143.1\|1585364_1586468_+	replication initiation factor domain-containing protein	Q64EV8	Vibrio_phage	4.3e-220	99.7
WP_001284206.1\|1586472_1586811_+	DUF1293 domain-containing protein	Q858R2	Vibrio_phage	1.3e-55	96.4
WP_001900021.1\|1586820_1587051_+	hypothetical protein	G8IRU7	Vibrio_phage	3.9e-35	94.7
WP_000672170.1\|1587084_1587294_+	hypothetical protein	G8IRU8	Vibrio_phage	1.1e-20	81.2
WP_001900014.1\|1587426_1588761_+	hypothetical protein	G8IRU9	Vibrio_phage	6.4e-69	81.4
WP_001160095.1\|1588760_1589105_+	DUF2523 domain-containing protein	Q64EV1	Vibrio_phage	4.8e-61	100.0
WP_001900019.1\|1589107_1590475_+	toxin	Q64EV0	Vibrio_phage	1.5e-259	99.3
WP_044144141.1\|1590483_1590669_+	hypothetical protein	G8IRV2	Vibrio_phage	1.3e-20	91.8

DBSCAN-SWA_3

1888119 : 1963442

Vibrio_phage(50.0%)

tail,integrase,tRNA,transposase

attL 1897974:1897987|attR 1968557:1968570

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001029434.1\|1888119_1888851_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_000093315.1\|1888854_1889556_+	arginyltransferase	NA	NA	NA	NA
WP_001040192.1\|1889639_1889858_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000584512.1\|1890161_1891367_-	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_000096995.1\|1891565_1893848_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_001208101.1\|1893903_1894530_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_001881528.1\|1894797_1894968_-	hypothetical protein	NA	NA	NA	NA
WP_000909262.1\|1895062_1895974_+	1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase	NA	NA	NA	NA
WP_001259524.1\|1896018_1896300_+	YnjH family protein	NA	NA	NA	NA
WP_000938025.1\|1896280_1897732_-	NAD-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_000777169.1\|1897764_1898394_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
1897974:1897987	attL	NA	NA	NA	NA
WP_000603461.1\|1898620_1899445_+	hypothetical protein	NA	NA	NA	NA
WP_000856384.1\|1899458_1900571_+	BamA/TamA family outer membrane protein	NA	NA	NA	NA
WP_001211065.1\|1900581_1901703_+	DUF4056 domain-containing protein	NA	NA	NA	NA
WP_001894242.1\|1901718_1903398_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_000359394.1\|1903655_1904954_+	paraquat-inducible protein A	NA	NA	NA	NA
WP_001278820.1\|1904965_1906594_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000805968.1\|1906590_1907169_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001069849.1\|1907384_1908479_+	multidrug efflux RND transporter periplasmic adaptor subunit VexC	NA	NA	NA	NA
WP_000350250.1\|1908478_1911529_+	efflux RND transporter permease subunit VexD	NA	NA	NA	NA
WP_000002768.1\|1912140_1913376_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.2e-146	62.2
WP_001881542.1\|1913471_1913927_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	7.8e-43	58.4
WP_071919735.1\|1914057_1917495_-	restriction endonuclease	Q2NP48	Hyphantria_cunea_nuclear_polyhedrosis_virus	7.0e-27	25.9
WP_000055826.1\|1917485_1918937_-	transcriptional regulator	NA	NA	NA	NA
WP_001252511.1\|1918933_1919668_-	flagellar motor protein MotB	NA	NA	NA	NA
WP_000132365.1\|1919660_1921781_-	anti-phage defense ZorAB system ZorA	NA	NA	NA	NA
WP_086010879.1\|1922675_1923852_+\|transposase	IS3-like element ISVch4 family transposase	Q716C2	Shigella_phage	1.5e-117	65.1
WP_000502257.1\|1926182_1928174_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_000301909.1\|1928166_1929579_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_000592367.1\|1929579_1930908_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_000350101.1\|1930924_1933306_-	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	5.6e-23	29.0
WP_000258536.1\|1933446_1935510_-	hypothetical protein	NA	NA	NA	NA
WP_000251914.1\|1935491_1939109_-	hypothetical protein	NA	NA	NA	NA
WP_001277248.1\|1939181_1940042_+	YafY family transcriptional regulator	NA	NA	NA	NA
WP_001008007.1\|1940106_1941177_-	YjhT family mutarotase	NA	NA	NA	NA
WP_001056548.1\|1941191_1942346_-	N-acetylneuraminate epimerase	NA	NA	NA	NA
WP_001052933.1\|1942527_1943364_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_000736956.1\|1943492_1944389_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_000233105.1\|1944426_1945710_-	sialic acid TRAP transporter large permease SiaM	NA	NA	NA	NA
WP_001889698.1\|1945717_1946239_-	sialic acid TRAP transporter small permease SiaQ	NA	NA	NA	NA
WP_000849284.1\|1946289_1947255_-	sialic acid TRAP transporter solute-binding subunit SiaP	NA	NA	NA	NA
WP_001889711.1\|1947469_1948192_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA
WP_001259414.1\|1948179_1949043_+	N-acetylmannosamine kinase	NA	NA	NA	NA
WP_071919736.1\|1949046_1950183_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_001211490.1\|1953098_1953275_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	2.8e-09	51.9
WP_000148675.1\|1953418_1953895_+	DNA repair protein RadC	NA	NA	NA	NA
WP_000213836.1\|1954124_1954820_-	hypothetical protein	A0A2I7S9D9	Vibrio_phage	1.2e-18	35.4
WP_086010879.1\|1954816_1955994_-\|transposase	IS3-like element ISVch4 family transposase	Q716C2	Shigella_phage	1.5e-117	65.1
WP_001909624.1\|1956036_1956996_-	tape measure protein	A0A2I7S9D9	Vibrio_phage	2.3e-116	73.1
WP_000290080.1\|1957211_1957571_-\|tail	phage tail assembly protein	A0A2I7S9E0	Vibrio_phage	3.7e-40	67.8
WP_000401420.1\|1957619_1957991_-	hypothetical protein	NA	NA	NA	NA
WP_000059473.1\|1958051_1958630_-	hypothetical protein	NA	NA	NA	NA
WP_000035502.1\|1958648_1958969_-	transcriptional regulator	NA	NA	NA	NA
WP_000879671.1\|1958955_1959330_-	middle operon regulator	NA	NA	NA	NA
WP_001059182.1\|1959909_1960143_-	hypothetical protein	NA	NA	NA	NA
WP_001064711.1\|1960139_1960601_-	hypothetical protein	NA	NA	NA	NA
WP_001094671.1\|1960603_1961713_-	ExeA family protein	A4JWN1	Burkholderia_virus	2.2e-51	36.3
WP_000992438.1\|1961684_1963442_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q5ZR04	Pseudomonas_phage	1.6e-91	34.5
1968557:1968570	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2199094 : 2218785

Vibrio_phage(27.27%)

tail,plate,terminase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071919752.1\|2199094_2199646_-	helix-turn-helix transcriptional regulator	L7P7S1	Pseudomonas_phage	2.7e-21	37.6
WP_032481898.1\|2199832_2200051_+	helix-turn-helix domain-containing protein	A0A2I7S995	Vibrio_phage	2.4e-18	66.2
WP_001900879.1\|2200061_2202116_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A2P9JZG7	Alteromonadaceae_phage	6.2e-71	32.4
WP_001900914.1\|2202112_2203045_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	9.7e-32	30.8
WP_001900877.1\|2203047_2203446_+	hypothetical protein	NA	NA	NA	NA
WP_001900884.1\|2203442_2203661_+	hypothetical protein	NA	NA	NA	NA
WP_001900870.1\|2203660_2203912_+	hypothetical protein	NA	NA	NA	NA
WP_001900907.1\|2203908_2204559_+	DUF3164 family protein	NA	NA	NA	NA
WP_001900878.1\|2204569_2204773_+	hypothetical protein	NA	NA	NA	NA
WP_001900900.1\|2204909_2205131_+	hypothetical protein	NA	NA	NA	NA
WP_001900922.1\|2205130_2205496_+	hypothetical protein	A0A2I7RZB2	Vibrio_phage	8.7e-37	62.3
WP_001900869.1\|2205498_2206020_+	hypothetical protein	A0A2H5BFX4	Vibrio_phage	3.2e-64	73.5
WP_044144333.1\|2206710_2206920_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_001900927.1\|2206912_2207608_+	DUF2786 domain-containing protein	L7P7W8	Pseudomonas_phage	3.3e-32	41.7
WP_001900889.1\|2207718_2208969_+	GIY-YIG nuclease family protein	Q9MC01	Enterobacteria_phage	1.6e-66	56.4
WP_001900924.1\|2209099_2209381_+	hypothetical protein	NA	NA	NA	NA
WP_001900873.1\|2209377_2209839_+	regulatory protein GemA	NA	NA	NA	NA
WP_001900928.1\|2209823_2210099_+	hypothetical protein	NA	NA	NA	NA
WP_001900891.1\|2210501_2210864_-	hypothetical protein	NA	NA	NA	NA
WP_001900904.1\|2210865_2211405_-	lysozyme	E5G6N1	Salmonella_phage	1.9e-27	43.7
WP_001900882.1\|2211401_2211662_-	hypothetical protein	NA	NA	NA	NA
WP_001900871.1\|2211686_2212853_-\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA
WP_001900929.1\|2212854_2213886_-	hypothetical protein	A0A2K9V340	Faecalibacterium_phage	2.0e-14	24.1
WP_001900890.1\|2213876_2214095_-\|tail	tail protein X	NA	NA	NA	NA
WP_001900885.1\|2214091_2214490_-\|tail	phage tail protein	NA	NA	NA	NA
WP_145926180.1\|2214491_2215031_-	hypothetical protein	NA	NA	NA	NA
WP_001900912.1\|2215075_2215714_-	hypothetical protein	NA	NA	NA	NA
WP_001900923.1\|2215853_2216405_+	DUF3486 family protein	NA	NA	NA	NA
WP_001900875.1\|2216401_2218054_+\|terminase	phage terminase large subunit	A0A0N7AEF1	Bacillus_phage	5.5e-38	26.6
WP_001900915.1\|2218062_2218785_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA

DBSCAN-SWA_5

2475752 : 2482369

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000864130.1\|2475752_2476223_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-34	48.7
WP_001122865.1\|2476487_2477597_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	6.7e-64	39.8
WP_000493874.1\|2477637_2478291_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.2e-31	38.2
WP_001131994.1\|2478295_2479399_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.3e-43	33.1
WP_000543544.1\|2479424_2479874_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_000366574.1\|2479973_2481224_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.0e-100	49.5
WP_000210573.1\|2481235_2482369_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-64	40.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage