CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP018154	Sphingopyxis sp. LPB0140, complete genome	8 crisprs	csa3,DEDDh,cas3,DinG	0	5	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018154_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018154_1

291775-291928

Orphan

Consensus_repeat	Method
GGACTGCTCCATCCCGCGTCACCAATATCGGACTGTTTGTTTTGTGCAGTCCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018154_1

>merge|NZ_CP018154|1|291775-291928|CRISPRCasFinder
GGACTGCTCCATCCCGCGTCACCAATATCGGACTGTTTGTTTTGTGCAGTCCGTGGCAGTTTTTTGTTTTTCCGCTTCAGCTTTGCTGAACCGGCTGGCGGGACTGCTCCATCCCGCGTCACCAATATCGGACTGATTGTTTTGTGCAGTCCGT

>NZ_CP018154|1|1|291775-291928|CRISPRCasFinder
GGACTGCTCCATCCCGCGTCACCAATATCGGACTGTTTGTTTTGTGCAGTCCGT	GGCAGTTTTTTGTTTTTCCGCTTCAGCTTTGCTGAACCGGCTGGCG
GGACTGCTCCATCCCGCGTCACCAATATCGGACTGATTGTTTTGTGCAGTCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018154.1\|WP_083549828.1\|300868_301528_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225316
NZ_CP018154.1\|WP_072558372.1\|310346_312164_-\|aminodeoxychorismate-synthase-component-I	unknown	unknown	gnl\|CDD\|236035
NZ_CP018154.1\|WP_072558360.1\|283166_284207_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP018154.1\|WP_072558368.1\|301569_303039_+\|TolC-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|273829
NZ_CP018154.1\|WP_072560105.1\|305802_308520_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP018154.1\|WP_072558369.1\|303104_303551_+\|DUF2497-domain-containing-protein	unknown	unknown	gnl\|CDD\|371195
NZ_CP018154.1\|WP_083549826.1\|289042_289486_-\|HXXEE-domain-containing-protein	unknown	unknown	gnl\|CDD\|379370
NZ_CP018154.1\|WP_072558371.1\|309031_310234_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NZ_CP018154.1\|WP_156874091.1\|280798_281065_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072558356.1\|277440_278121_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072558357.1\|278284_280591_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NZ_CP018154.1\|WP_072558359.1\|281084_282998_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP018154.1\|WP_072558366.1\|297981_299004_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP018154.1\|WP_083549823.1\|285714_287775_+\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP018154.1\|WP_072558362.1\|287774_288884_+\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP018154.1\|WP_156874092.1\|285196_285718_+\|rod-shape-determining-protein-MreD	unknown	unknown	unknown
NZ_CP018154.1\|WP_083550452.1\|299222_300437_+\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349891
NZ_CP018154.1\|WP_156874093.1\|308600_308771_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072558361.1\|284222_285134_+\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP018154.1\|WP_156874224.1\|303677_305723_+\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224423

Protein	Function_ID	Function_description	E-value
NZ_CP018154.1\|WP_072558360.1\|283166_284207_+\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP018154.1\|WP_072560105.1\|305802_308520_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP018154.1\|WP_072558369.1\|303104_303551_+\|DUF2497-domain-containing-protein	gnl\|CDD\|371195	pfam10691, DUF2497, Protein of unknown function (DUF2497). Members of this family belong to the Alphaproteobacteria. The function of the family is not known.	2.85389e-22
NZ_CP018154.1\|WP_083549826.1\|289042_289486_-\|HXXEE-domain-containing-protein	gnl\|CDD\|379370	pfam13787, HXXEE, Protein of unknown function with HXXEE motif. This domain contains an HXXEE motif, another conserved histidine and a YXPG motif. Its function is unknown.	6.07885e-11
NZ_CP018154.1\|WP_072558371.1\|309031_310234_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NZ_CP018154.1\|WP_072558368.1\|301569_303039_+\|TolC-family-outer-membrane-protein	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	1.39723e-77
NZ_CP018154.1\|WP_072558372.1\|310346_312164_-\|aminodeoxychorismate-synthase-component-I	gnl\|CDD\|236035	PRK07508, PRK07508, aminodeoxychorismate synthase component I.	3.86151e-142
NZ_CP018154.1\|WP_072558357.1\|278284_280591_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NZ_CP018154.1\|WP_072558359.1\|281084_282998_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP018154.1\|WP_072558366.1\|297981_299004_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	3.07325e-29
NZ_CP018154.1\|WP_083549823.1\|285714_287775_+\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP018154.1\|WP_072558362.1\|287774_288884_+\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.54618e-139
NZ_CP018154.1\|WP_083549828.1\|300868_301528_+\|hypothetical-protein	gnl\|CDD\|225316	COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones].	9.53202e-37
NZ_CP018154.1\|WP_083550452.1\|299222_300437_+\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349891	cd03896, M20_PAAh_like, M20 Peptidases, Poly(aspartic acid) hydrolase-like proteins. Peptidase M20 family, Poly(aspartic acid) hydrolase (PAA hydrolase)-like subfamily. PAA hydrolase enzymes are involved in alpha,beta-poly(D,L-aspartic acid) (tPAA) biodegradation. PAA is being extensively studied as a replacement for commercial polycarboxylate components since it can be degraded by enzymes from isolated tPAA degrading bacteria. Thus far, two types of PAA degrading bacteria (Sphingomonas sp. KT-1 and Pedobacter sp. KP-2) have been investigated in detail; the former can completely degrade tPAA of low-molecular weights below 5000, while the latter can degrade high molecular weight tPAA to release oligo(aspartic acid) (OAA) as a product, suggesting two kinds of PAA degrading enzymes. It has been shown that PAA hydrolase-1 from Sphingomonas sp. KT-1 hydrolyzes beta,beta-aspartic acid units in tPAA to produce OAA, and it is suggested that PAA hydrolase-2 hydrolyzes OAA to aspartic acid. Also included in this family is Bradyrhizobium 5-nitroanthranilic acid (5NAA)-aminohydrolase (5NAA-A), a biodegradation enzyme that converts 5NAA to 5-nitrosalicylic acid; 5NAA is a metabolite secreted by Streptomyces scabies, the bacterium responsible for potato scab, and metabolized by Bradyrhizobium species strain JS329.	7.56581e-93
NZ_CP018154.1\|WP_072558361.1\|284222_285134_+\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	1.09869e-62
NZ_CP018154.1\|WP_156874224.1\|303677_305723_+\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	5.20137e-106

>NZ_CP018154.1|WP_083549826.1|289042_289486_-|HXXEE-domain-containing-protein
MRLSKKNVAAQNMWILFAALCVHNLEEAFTYGYYREQSIALTARFVGHNVSLPTPSIFILALIIVAILAAAATIWVCRGPFGPAKHHMVNCFAAILLVNLFIPHIPAAFLLNGYAPGVVTAILINLPVSIFVLRRANAVKYKSKNDY
>NZ_CP018154.1|WP_072558362.1|287774_288884_+|rod-shape-determining-protein-RodA
MSVIPDKIAALPWRIIFLLLIMVSFGTTVLYSAAGGNMQPWAAKHMIRFLILLAMAIVMSRFSLDFYKAITFPVYGAILLLLMGVEILGFVGGGSQRWIDLGFMMLQPSELMKPAIVLAIASFFDRLPPSKIGTFDAVWPVMMLIGVPAAFVLLQPDLGTSLAIIAGAIVVGFVAGWPLKWFITAGISAIFLIPLAFFFGLEEYQQKRVTTFLNPEADPLGSGYHVNQSQIAIGSGGLFGKGFLNGTQSHLDYLPEGHTDFVFATMAEEWGMIGGLAVIFGFFLLLKWGTNVGLNCKSRFGQLTAVGLTFVIFFYAGVNLMMVMGFAPVVGIPLPFLSHGGSSMMTIMICIGIIMAIERNPGGRNSTFS
>NZ_CP018154.1|WP_083549823.1|285714_287775_+|penicillin-binding-protein-2
MKFGRPSKKNKAPFTIAQQNFAFSRRTLFVGAVQGGFGVLLSARMAYIAVAENEKYRLASESNRVNLTFIPPRRGWFVDRFGKPIATNRTDFRVDVIPDRMVDKDATIKSLAELLSLDTETVERIKKEVKHSSGFQPVQVASGMSFDDFAKISVRAPDLPGVSPRQGFSRYYPSGPAVGHLIGYVGGASAEEYKALKNPLLITPGFKIGKDGLEKQFEKTLEGSPGAKRVEVTARGKIVRELTTRGDVPGKPVQLTIDIDLHNYAARRLGLESGSVVVMDCLTGDILTMASMPSFDPNSFSDGIGVSEYKWLAQDDHKPLRNKTLSGLYPPGSTVKPMVAMAFLEAGLDPEASVGCSGGLRVGNRVFRCWNRRGHGSVNMRRAISQSCDVYFYHFAQKIGMDPIALMAEKLGMGQKFDLPVASQSYGTVPNPAWMLKKHERKWAAFDTVNSTIGQGYMLANPLQLAVMASRLATGKNLMPHLLLNKKAKPPSELGFTEEHINYVRQAMSDVVNGDGTAGRARLPIADVKLAGKTGTAQVVSLDYGRGGSDVSWKYRDHGLFICFAPFDNPRYAASVVIEHGGGSGSAYPIARDVLTFLYDREAAMKTLESMEAGWGGTPEQRMARNLAAFRVQNGVDAKPKPTNEPPSANGAANATASPSPATGQSPSTGQVPPTGQVPTNDAGDE
>NZ_CP018154.1|WP_156874092.1|285196_285718_+|rod-shape-determining-protein-MreD
MKRRPRHRSSLNRSQSKSRKTFIPIASILFCSALSGIFLITQHPLLPPLGFMMFISWRLLRPSLFPMWAGLPFGLMDDIFTAQPFGSGGLLFSLTMLVMMNIDNRTSWRQYGMNWVIGAILIIIYLFANLFFQGIYQIRAEFITIMPQTILAILTFPLMLRLAGWLNRYRLSS
>NZ_CP018154.1|WP_072558361.1|284222_285134_+|rod-shape-determining-protein-MreC
MATPDKRRLGFSRRAQYNLFAAYLLAIAGAIMAALLLLISLLDPAGFSALRVAATELTSPVARFFSSVRQSTTDVSENMSAYFDAASQNRELDKKLSLYRQREMKYKAAELENKRLRAMLNLIEQEPTHIAMGRLIGSTTVNSRRTAILSVGGNDGVKNGQPVRSPNGLIGRVIETGPTTSRILLITDPENVVPVMRITDGVPAFATGTANGQLTIKLINLGLNPFKVGDILVSSGNGGLFPPNVPVAIVTKKTDEGAEARPLADPTREPWAAVYPPFQKSEAITPINASSLNKEESGEDDAP
>NZ_CP018154.1|WP_072558360.1|283166_284207_+|rod-shape-determining-protein
MLFSRFFRLASQDMAIDLGTANTVVYVRGQGIVLNEPSVVAIETLNGIRRVKAVGNDAKLMMGKTPDSIEAIRPLRDGVIADIDVAEQMIKYFIEKVHGKRRMFRYPEIVICVPSGSTSVERRAIRDAASNAGASEVHLIEEPMAAAIGADMPVIEPIGSMVVDIGGGTTEVAVLSLRGLAYTTSVRTGGDKMDEAIVSYVRRHHNLLIGEATAERIKKEYGVARAPKDGVGETIHIKGRDLVNGVPKEISINQAQIAEALAEPIGTIVEGVRIALENTAPELAADIVDQGIVLTGGGALMSGLDEYMRDETGLPVTVAEDPLTCVAIGTGRALEDPLFRGVLITA
>NZ_CP018154.1|WP_072558359.1|281084_282998_-|DNA-mismatch-repair-endonuclease-MutL
MSIRRLPENLVNRIAAGEVVERPASALKELVENAIDAGADRIDIRLGEGGLDLIEIIDNGCGMDRDDMALAMERHATSKLPDEAIEKVATLGFRGEALPSIASVSTLNLESRIENGDGWKLTIDHGVRSAFSPIAMPYGTRIRVENLFGKIPARRKFLRTARSEYGASMDVIRRLAMARMDISFHVEHNGKQSLSLQQTDNLAQRISALTAAGFAQNSIAIDMPRDGVRLYGLASVPTFNRGIADHQYLFVNGRPVKDRLLTGAIRGAYAEMLARDRHAVVALFIDIDHDLVDVNVHPAKTEVRFREPAMIRGMIVAGLRRALDEAGFAGSRRADENAMSRWQTEPIIEQQTNIFDNAGAGHSQSFGSNPPNDEMSGAYHWQGDRDMRASHVADGATPYRGNFNSAYNGGYNAPNPKNAAIIYENLAPLMGRAVQATAPIEDAASYPLGIARGQIANTYIVAEAMDGLVIVDQHAAHERLVLERMRKAGEGQAIAAQGLLIPDIVELSEEECDRLEAVQADLALLALDVERFGPNAMMVRSVPAMLKKVDAAKLLADIADDLTAFDAALSLKERIDHVAATMACHGSVRAGRVLNVTEMNALLREMEVTPHSGQCNHGRPTWVKLAMDDVEKLFGRK
>NZ_CP018154.1|WP_156874091.1|280798_281065_-|hypothetical-protein
MAINRPRAIMWGILTFILLLPLAAMQFTDQVNWTGFDFFIAASLLFGMAMAIEIAICLIPQKISRYIIVAIIILTALSFWIDGAVGIF
>NZ_CP018154.1|WP_072558357.1|278284_280591_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MTDHHAYAKPEITPQIVAEHGLNQEEYQRILNAMGREPNLVELGIFSVMWSEHCSYKSSRIHLSKLPTTAPWVICGPGENAGVIDIGEGPNGTKLAAIFKMESHNHPSYIEPYQGAATGVGGILRDVFTMGARPVANLNALRFGRPEHPKMKHLVKGVVAGIGGYGNCVGVPTVGGEVNFHPAYDGNILVNAMTVGVADQTKIFYSAATGVGNPIVYVGSKTGRDGIHGATMASADFGEDAEEKRPTVQVGDPFTEKLLIEACLELMATDAIVAIQDMGAAGLTSSSVEMATNGKAGIRLNMDNVPCRETGMTPYEMMLSESQERMLMVLKPGKEAMAEAIFKKWELDFAIIGEVTDTGHMVLEWQGEVVCDIPLGPLAEDAPKYDRPAMSKEDYQAWANVPPLGDIPQSADIGADLLKLMASPDIASRRWIYEQYDSQVGGDTAQLSGGDAAVVRIHGTNDGKAGRALAMSTDCTPRYVYANPFEGGKQAVAETYRNISAVGATPLAITNCLNFANPERPEIMAQFVGALEGMGEACRALDYPIVSGNVSLYNESKATGGGSAILPTPAIGGVGVMEDVSKMATIALKESGQQLLVIGAPDEIGSHMGQSLYVRYILDRESGDAPHVDLEKERKTGEMIRQLIHNQQVDAVHDCADGGLLVAITEMAMAGNIGAQVDLQPGQSNNAVAAMFAEDQGRYIVAIPKGISYMDVVKMVRDAGINCYHIGVTGGDSIWLGDISGKFGEVANIPLTDLRAAHESFFADWMAD
>NZ_CP018154.1|WP_072558356.1|277440_278121_+|hypothetical-protein
MFIGHYAPAFVAAALIGASSGSKILGARRPAVLAIMMAAAQLVDIFFFALVIGGAENMRIIEGISASNNMDFYHMPYTHSLLGNAIFALIFAIIIQILYKHRRLSILAGCVVLSHWFIDWLVHIPDLTMMGSAPKFGLGLWNYPMIARLLETTFIGISILFYFAARHKKMARRPFWVLVMVLIMLQSFDWFAPAPTQMSLRLPMMALFAYIVVILLSFWNDRAKHK
>NZ_CP018154.1|WP_072558366.1|297981_299004_+|tetratricopeptide-repeat-protein
MNLVRRISLTFLAAASLYGCGAQTDSFNKAQSYFNAGQYASANVELLNAVKQNPDNKDVQILRAKLMIELGDGYAAESAALSARNLGGDPAVISTLLAEAALIQGNVRKSREQVDAAKGAFAMPADEYRLRGELALINKEQDEARSLFQKALEIDPKDAKTLINLGNIYLSAGEIIPAYKTALLAIEAAPQKIGGHILAGRAALQAQQYDRTILHLEDAKKLDANNSLAAFTRAAAFERLGRYDEMAENVALGRKTAPNSPYGQYLDGILEAQKGNYRSAVNLLEAANAQLPGDAVILAWLAESHFNLGNKWQAITAAEKANKLVPNDDYYRKLLDKVKA
>NZ_CP018154.1|WP_083550452.1|299222_300437_+|M20/M25/M40-family-metallo-hydrolase
MAAILSALLFLSSPPLYAKSADNIFDYDQIIAELTTITEIAAPPFKEQKRAAYMAEQFRKIGLTDVKIDEEGNVTGIMSGKKKDEFMVVSAHLDTVFPEDTPIKVMRKDNRLYAPGIGDDSVGLTAILAYARQLKQQNIKTNRSILFVATVGEEGQGDLRGARYLMQRGEYKDRIKGFISIDGSDNNRITHIAVGSRRYRLIFKGPGGHSYGAFGIVAPMAAMGDFISRLYLIDTPGNPKTTYSASVVSGGTSVNTIADSIALEIDMRSSGPEELKQLEERVFKDLEGAILAENAARDTSLGKVSVEIILIGDRPAGSIPLTNGMIMAIGNSLSAHGYVPQYNASSTDSNIAIAMNIAAVTIGVGAGGGRAHSAEEYLNVEKEPLLKGFVAGYDSIIAAANAQY
>NZ_CP018154.1|WP_083549828.1|300868_301528_+|hypothetical-protein
MMNYKQMRTAMVNSQLRTCDVNTPWILDAMSKLPREEFVGEAQREFAYMDRPLKVSGDRMMAPPIVAGQILTRIAPSGGEKILIIGGGSGYVAALIAPQIFNLHFIEPDADLLARAKDNLSGFDNITFVDGDWTTGPHDKNADFGEYDVILLDAVAQKAPEALAALLKDGGKFICGNDDGATTSLCVGIKAGGQVKLVPKDPAYMPFIDALSEPAGFTF
>NZ_CP018154.1|WP_072558368.1|301569_303039_+|TolC-family-outer-membrane-protein
MALNIKSQLWGSAFILTAAALTLPIHAETLQQALQSAYDSNPNLTAARAGQEALNENVPLARSSGRPSASIQPTFTENVVTSGGAFAQARSFSAVGSVSVPLYQGGAVKNAVRGAENRVEAGFASLRGTESAIFSAVVGAYMDVIRDEAIVELNRAQAGTLQVNLEATKDRFEIGDVTRTDVAQSESRYSLALANLETARANLIRSKEIYIQLVGNEPGDLEAPPPLPNLPESADMAVDIAVEHNPDLIAAKEQVEASRYDRKAAEAGRLPTVSAFSQSRYNNALNSLSTQASAFSPNATFDNSIGIRATIPIYQGGAPSAQIRQAQARISQAQELEIAAEREVIAQTRAAFSSWRATQQVIMASQRAVEASQLSLEGVRIENSVGNRTILDILNAEQELVAAKSQLIAARRNNYVAGFTLLAAMGRAEARDLGIDGGPLYDPVANYNDVKNQWNDWSSVPSTQPKATRTTNSNAQSADIEAFPDYSRR
>NZ_CP018154.1|WP_072558369.1|303104_303551_+|DUF2497-domain-containing-protein
MAQNDGKNGEPTVNEILSSIKKIIAQDDGLRTRTRDRAARDVLELSADNAVDDHDMPHMTAPLDGQFDDDAGLIDNAKAQSLRHSLSALATLAEPGVSPQIVRSGETSLEGMVREMLKPVLKQWLDDNLPDMVEAMVAKEIARITRKG
>NZ_CP018154.1|WP_156874224.1|303677_305723_+|prolyl-oligopeptidase-family-serine-peptidase
MILVQPAFAKSADASPRAMTEVDLATLKRIGSPTVSPNGEYVVYQLRETDLTANKGRTDLYLVQLNIAEQEPVKIASKPEFNEHSPAFSSDGKLLYYISNEGGSDQLYYYDMDSQTSTQASNLATDIAGFKLAHKGDKIALWGDIGRECPTFGCKDDGNTATPGPGTGREYTQNFVRHWDSWETPGNYSRIFTFDMVDGKVSGDGVAMDGKGEGRLIGDAPSKPFGGGEEIAWTPSGNGVLFAARKADANEPLSTNLDIYGNNASTGEDLVNLTIDNEATDTMPISSPDGKWLAYAAMARAGYESDKLTLMLLNPVDGTRKALTENWDRSVGSIAWAPDSQSLLVTAGDTLEHPMFRVDLSGKVTRLTGDGNVNDVTPLTDGSILYSMNTVLMPSDLYIMDAAGKSRKITDVNAGQLAELNPVVQQKFDFAGANGDQVFGMIIKPANVKGPLPVAFVVHGGPQGSFGNSWSYRWNPRVIASQGYAVVTVDFHGSTGYGQAFTDSINKDWGGKPLEDLKLGLAAAGKIDPQADITNACALGASYGGYMMNWIAGNWNDGFKCLVTHAGVFDLRAMSMETEELWFDEWDHGGPWWSRTDAEKWNPVNHITKWKTPTLVIHGEKDFRIPYSQSLAAFTVLQRQGIESKLLIFPDENHWINKPNNSIQWHNNVFNWLDSHLKKAK
>NZ_CP018154.1|WP_072560105.1|305802_308520_+|valine--tRNA-ligase
MTIDKNTIDKNFDPATIENNWYGHWEEQGLFRPERPNAAPYTIVNPPPNVTGSLHIGHALDNTLQDIMIRYERLRGKDALWVVGTDHAGIATQMVVERKMEAQGDKRANYDRDGFIEKVWQWKEESGGTITTQLRRLGCSMDWSREQFTMDPHFSKAVIKVFVDLYNDGLIYRDKRLVNWDPKLKTAISDLEVETREIQGNFWHFKYPLADDVTLDNGQDYIEVATTRPETMLADMAVAVNPEDPRYQSVIGKHVILPLTGRLIPIVADEHADPELGSGAVKITPGHDFNDFEVGKRAGFAPADMLNMLDGDAHVCQTADDLIPDEYIGVERFAARKAVVAALKASGHLIAHLDKDGNEHDAEPRTIQTPYGDRGGVVIEPWLTDQWYVDAKTLAKPAIEAVKSGAIEIVPKSWEKTYFNWMENIQPWCVSRQLWWGHQIPAWYDENGDFYVANSEEEAQEKAGNDVKLTRDSDVLDTWFSSALWPFGTLGWPSENAPLYDKHYPNDLLISGFDILFFWDARMIMQGIQQTGKAPWKKLYLHGLVRAADGQKMSKSKGNVVDPLGLIDQYGADALRFFMAAMESQGRDIKMDDKRVEGYRNFATKLWNAARFAQSNGIGASDTLSAPAANLAVNRWIIGEVTQCQQVLDKALADLRFDAAANAIYHFVWDNFCDWYLELTKPLLQGEDISAADETRMVAGWVLDQILVMLHPFMPFITEELWHKLAGDSPRNYDLIIAKWPAPNAKIDDAAKAEVEWLIKLTTEMRGAKAELGIAPGAKLTAYIADADAALQGRITGQLPTLDRVSRLEAIHFTAAPDGPSMQIPVDGVTFVVPLDGVIDIAAEKARLSKALEAVEKETGALQGRLNNANFVERAKPEAVEKARSDLAEKAAEAESLKTALARLG
>NZ_CP018154.1|WP_156874093.1|308600_308771_-|hypothetical-protein
MNSMIKMIKFVRSDLFISISAGFALGMAGLFLTQPAHADQSAHNKVERSLVVDQGK
>NZ_CP018154.1|WP_072558371.1|309031_310234_-|pyridoxal-phosphate-dependent-aminotransferase
MTNTSAALNRIAPSATLAMSAKVIDLKAQGVDVIGLSAGEPDFDTPDFVKDAAIQAIRDGDTNYTNVDGTAALKAAIAAKFKRDNGLEYAANQITVNAGGKHTLFNALCATVDAGDEVIIPAPYWVSYPDIVQFAGGTPVFILASADQNYKITPEQLEAAITPKTRWLILNSPSNPTGAAYSGEELAALGEVLRAHPHVLILTDDMYEHIWYADFPFATIAQICPDLYDRTLTMSGASKAYAMTGWRIGYAGGPVWLIKAMAKLQSQSTSNPCSISQAATVAALNGPQDFLKERNAKFKERRDLVVAMLNDAPGLKCPVPEGAFYVYPDASELMGKKTPAGNVIENDEQLIEYFLTEAKVAAVHGGAFGLSPGFRISYATSTDILKEACKRIQHACAALS
>NZ_CP018154.1|WP_072558372.1|310346_312164_-|aminodeoxychorismate-synthase-component-I
MDRKINNIAALSGPFILLDDARASGAAPSRLYINPIDILTTHHPAELPDIFASMETYKQQGKYAAGFISYEAGLAMEGRTLPKLPLPDNLTQPLLWFAIFDDFETFNSEEIATILPSNKGAILGDMQPQIEQAEYQLNFEKLIQYINNGDIYQANYTFANLATLTGSPLSLYAALRPRARAGYGGIIWTGSQWHLSFSPELFFSVKSGKITTRPMKGTAPRHHNPVEDKKLAHILAHDEKQRAENLMIVDLLRNDISRICVAGSVRADKLFHVESYPTVHQMTSTIEGELKGNVDFARILRAIYPCGSITGAPKIRAMEIIDELEISPRGIYCGSIGRLDPDGDMAFNVAIRTISLAKTDKPQIWAANLGLGSGIVADSLGENEWRECLLKGEFTKIDKHAVDLIETMRFDPAHGILRLEAHLARLKNSASDLKFMFDRHEARNMLHAATFHIEHISKVRLLLSHSGAMSIAISPIKDGTDRELRVIICPMTLSSDDYRLRYKCTDRAFYDEPRRAASHVDEVIFCDDNGNLTEGSFTNIFVPDGKDGFITPPLKHGLQPGILRAEMIDEGIAVEGDITAQSLSDGFFVGNSMRGLMRARIILVK

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Crispr_ID: NZ_CP018154_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018154_2

362955-363044

Orphan

Consensus_repeat	Method
AGGATGGCAGAAAAAGTGGGAACCGGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018154_2

>merge|NZ_CP018154|2|362955-363044|CRISPRCasFinder
AGGATGGCAGAAAAAGTGGGAACCGGTTTTTCGCTTCGCCATCCGACCAAAAGATTGAACAGGATGGCAGAAAAAGTGGGAACCGGTTTT

>NZ_CP018154|2|2|362955-363044|CRISPRCasFinder
AGGATGGCAGAAAAAGTGGGAACCGGTTTT	TCGCTTCGCCATCCGACCAAAAGATTGAAC
AGGATGGCAGAAAAAGTGGGAACCGGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018154.1\|WP_156874226.1\|369891_370224_+\|iron-sulfur-cluster-assembly-accessory-protein	unknown	unknown	gnl\|CDD\|272875
NZ_CP018154.1\|WP_072558412.1\|358980_360408_+\|metalloprotease-TldD	unknown	unknown	gnl\|CDD\|182685
NZ_CP018154.1\|WP_072558414.1\|360664_361381_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226098
NZ_CP018154.1\|WP_072558416.1\|363673_364831_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP018154.1\|WP_072558408.1\|352473_353256_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|379293
NZ_CP018154.1\|WP_072560125.1\|364841_367550_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	unknown	unknown	gnl\|CDD\|237612
NZ_CP018154.1\|WP_083550459.1\|371072_372200_-\|DUF1501-domain-containing-protein	unknown	unknown	gnl\|CDD\|226587
NZ_CP018154.1\|WP_156874096.1\|369110_369737_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NZ_CP018154.1\|WP_072558415.1\|363232_363640_-\|DUF2282-domain-containing-protein	unknown	unknown	gnl\|CDD\|370796
NZ_CP018154.1\|WP_072560127.1\|372205_373663_-\|DUF1800-domain-containing-protein	unknown	unknown	gnl\|CDD\|378055
NZ_CP018154.1\|WP_072558410.1\|354365_354863_+\|DUF4402-domain-containing-protein	unknown	unknown	gnl\|CDD\|373023
NZ_CP018154.1\|WP_072558411.1\|355925_358652_+\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
NZ_CP018154.1\|WP_072558421.1\|370273_371065_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197320
NZ_CP018154.1\|WP_072558409.1\|353252_354191_+\|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl\|CDD\|275105
NZ_CP018154.1\|WP_072560121.1\|355048_355888_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072558417.1\|367597_368056_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239315
NZ_CP018154.1\|WP_156874225.1\|368103_368925_+\|DUF455-family-protein	unknown	unknown	gnl\|CDD\|377292
NZ_CP018154.1\|WP_072558413.1\|360441_360654_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378182
NZ_CP018154.1\|WP_072560123.1\|361601_362945_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP018154.1\|WP_072558407.1\|351817_352477_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|234637

Protein	Function_ID	Function_description	E-value
NZ_CP018154.1\|WP_072560127.1\|372205_373663_-\|DUF1800-domain-containing-protein	gnl\|CDD\|378055	pfam08811, DUF1800, Protein of unknown function (DUF1800). This is a family of large bacterial proteins of unknown function.	9.86689e-116
NZ_CP018154.1\|WP_072558412.1\|358980_360408_+\|metalloprotease-TldD	gnl\|CDD\|182685	PRK10735, tldD, protease TldD; Provisional.	0
NZ_CP018154.1\|WP_072558414.1\|360664_361381_+\|hypothetical-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	9.24189e-42
NZ_CP018154.1\|WP_156874096.1\|369110_369737_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.93517e-46
NZ_CP018154.1\|WP_072558408.1\|352473_353256_+\|ParA-family-protein	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	6.08205e-82
NZ_CP018154.1\|WP_072560125.1\|364841_367550_+\|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase	gnl\|CDD\|237612	PRK14108, PRK14108, bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase.	0
NZ_CP018154.1\|WP_083550459.1\|371072_372200_-\|DUF1501-domain-containing-protein	gnl\|CDD\|226587	COG4102, COG4102, Uncharacterized protein conserved in bacteria [Function unknown].	2.56162e-71
NZ_CP018154.1\|WP_072558410.1\|354365_354863_+\|DUF4402-domain-containing-protein	gnl\|CDD\|373023	pfam14352, DUF4402, Domain of unknown function (DUF4402). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 182 amino acids in length.	1.51287e-12
NZ_CP018154.1\|WP_072558415.1\|363232_363640_-\|DUF2282-domain-containing-protein	gnl\|CDD\|370796	pfam10048, DUF2282, Predicted integral membrane protein (DUF2282). Members of this family of hypothetical bacterial proteins and putative signal peptide proteins have no known function.	3.12951e-15
NZ_CP018154.1\|WP_072558416.1\|363673_364831_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP018154.1\|WP_072558411.1\|355925_358652_+\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	0.000187771
NZ_CP018154.1\|WP_072558421.1\|370273_371065_+\|exodeoxyribonuclease-III	gnl\|CDD\|197320	cd09086, ExoIII-like_AP-endo, Escherichia coli exonuclease III (ExoIII) and Neisseria meningitides NExo-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Escherichia coli ExoIII, Neisseria meningitides NExo,and related proteins. These are ExoIII family AP endonucleases and they belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER, the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiencies. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity. For example, Neisseria meningitides Nape and NExo, and exonuclease III (ExoIII) and endonuclease IV (EndoIV) in Escherichia coli. NExo and ExoIII are found in this subfamily. NExo is the non-dominant AP endonuclease. It exhibits strong 3'-5' exonuclease and 3'-deoxyribose phosphodiesterase activities. Escherichia coli ExoIII is an active AP endonuclease, and in addition, it exhibits double strand (ds)-specific 3'-5' exonuclease, exonucleolytic RNase H, 3'-phosphomonoesterase and 3'-phosphodiesterase activities, all catalyzed by a single active site. Class II AP endonucleases have been classified into two families, designated ExoIII and EndoIV, based on their homology to the Escherichia coli enzymes ExoIII and endonuclease IV (EndoIV). This subfamily belongs to the ExoIII family; the EndoIV family belongs to a different superfamily.	6.47245e-120
NZ_CP018154.1\|WP_072558409.1\|353252_354191_+\|ParB/RepB/Spo0J-family-partition-protein	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	7.07234e-78
NZ_CP018154.1\|WP_156874226.1\|369891_370224_+\|iron-sulfur-cluster-assembly-accessory-protein	gnl\|CDD\|272875	TIGR00049, Uncharacterized_protein_in_nifU_5'region, Iron-sulfur cluster assembly accessory protein. Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.16349e-36
NZ_CP018154.1\|WP_072558417.1\|367597_368056_+\|peroxiredoxin	gnl\|CDD\|239315	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth.	3.47237e-59
NZ_CP018154.1\|WP_156874225.1\|368103_368925_+\|DUF455-family-protein	gnl\|CDD\|377292	pfam04305, DUF455, Protein of unknown function (DUF455).	3.75279e-110
NZ_CP018154.1\|WP_072558413.1\|360441_360654_+\|hypothetical-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	6.22807e-10
NZ_CP018154.1\|WP_072560123.1\|361601_362945_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	1.7528e-160
NZ_CP018154.1\|WP_072558407.1\|351817_352477_+\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|234637	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG.	6.099e-41

>NZ_CP018154.1|WP_072560123.1|361601_362945_+|ammonium-transporter
MRKTKMIMGAVGATAFSMLSVLPAFAQEAAEAAAPIVDKGDTAWMMTATVLVMAMIVPGLALFYGGLVRTKNMLSVLTQIIAVASLAMVVWVLYGYSMAFGGGDLIPGIVGNFDKIFLNGVTVDSVADTFSDGFKIPEYVFIAFQMTFAAITVALVVGGLVERLKFSALMLFALIWLTIVYFPIAHMVWGVGGIILDMGAYDFAGGTVVHINAGVSALVGAIILGKRIGYQKEIMAPHSLTMTLIGTGLLWVGWFGFNAGSALEANGSAALAMINTFAATAGGVLFWMLTEKALGHKGSMLGACSGAIAGLVAITPAAGNAGPAGAILLGGLSSVICCYFVMKLKAKFGFDDSLDAFGIHGLGGIVGSIGVAIVNLPGLGGQAGDDYDLMGQLGIQIAAVGIAVAWATIGSAIAFYIVKAVIGLRVSEEVEREGLDLGEHGERAYNY
>NZ_CP018154.1|WP_072558414.1|360664_361381_+|hypothetical-protein
MTLSLRVTSYNIHKAVGTDGRYDPARIMDILHIVDADIVALQESDRRFGNRHSCLPLDMIENNQKWQIVDFKGKHEKKVHHGIGWHGNALFIPKQAKIIHSETIKLPTLEPRGAICAHIEIGGQHLCIISCHLDLSGLWRRRQIRTILEYIDKHPHKLPTILMGDFNQWSRSGALSEFAYHHLKLVDMGPSFPSRRPVARLDRLLHSPDIIISNHGVCDDAKARQASDHLPIWADVQI
>NZ_CP018154.1|WP_072558413.1|360441_360654_+|hypothetical-protein
MSLVELARFPTKIKADICKSFLQSHEIMSVIFDDGMNNFFGGGGLIAVKLMVLDEDHDEAASLLAKAELL
>NZ_CP018154.1|WP_072558412.1|358980_360408_+|metalloprotease-TldD
MNIDDPRIFLYRPGLLDPDSAQQLAKMSLASCDDGEIYLQYSAVESFGFDDGRLKTADYSVDSGFGLRGVSGEMTGFSHASEISEAAIKRAAQTLQLLDPATQNPAAPPQRTNRHLYTDGNPLEQLAFAKKVALCEKIDAAARARDPRVKQASIGLSASWSVIEIVRADGFVATDIRPLVRLNVSIVLEENGRRESGSFGLGGRYLYDKLFDESEWMRAIEEAFKQAEANLRSVPAPAGDMTVLLGPGWPGVLLHEAVGHGLEGDFNRKGTSAFSGKIGQRVASPGVTIIDNGAIADRRGSLSIDDEGTATQENILIEDGILRGYMQDRMNARLMGVEPTGNGRRESYAHAPMPRMTNTYMQGGEDDPEELLSRVKDGIYAKSFGGGQVDIVSGKFVFSCTEAYKVKNGKLGDPIKGATLIGDGPVAMQKVIGIGNDMALDEGIGICGKGGQSVPAGVGQPSVLISGLTVGGTGG
>NZ_CP018154.1|WP_072558411.1|355925_358652_+|carboxypeptidase-regulatory-like-domain-containing-protein
MYKLFHHIKRAILAIAMGVGACHVPASTAYAQDDAGWKANDDDALLFDVRVKQWRLGDGVRGYQTDQGICVVFGDAILAMDLPLRLDKKSRRATGWLFQESRTFTLDREQNIVQIVNKSIALQAGDIYDVPEGWCVDTKILGQWLDVTLKPDLSNALLVMESENKLPFEYAEERKEKAAKIRPTTQFDLNKLPQATDPFRFWRTPSADIIATAGVSKDKLAGNRQDVSYEILLSGELAKASFDARLSSDNKGVPDNLRLRLYRTDVNAGLLGPLKATYVGIGDVSTVSTSLGGQNTFGRGAFVTNRPIERPENFDRTTFRGELPSDWDAELYRNDQLIGYTTSRGDGRYEFLDIPLLYGQNSFEIVLYGPQGQIRREYRNVPVGLDSIPPKQTYYWAHVQDAGRDLIGLQEQQSYDFLGLRGGVGVERGLNSRTSVAASITSLMSRGERYHYLEASVRRAVGPALVELAAANDLEGHSAVSAQMLGQFGDVNISAQSIWLGKNFNTERVDFNVKQKHNITADYSFKIGKNNIPLHVELRNDVRRNGVSKWEALGRLSFNINRLNVNTDISWEKDVVGNVGAAQPARLYSTARVSGRFGKVRLRGEARFQLSNGAGFEESRITAEWRAGENSEWRAEVGYDAKQSRGRAAIGMTRKFKQFAMTGQVEAASDGAVAAGINLAFSIGPKPESGGFRVTSEKLAANGQALAIIYHDENGDGIRQENEPLEQGVELTAGFSGRSLPTDVNGRTMVDNLQPFDPILIGIDGSSLPDPFIQPATAGIVVTPRPGIPMLIELPLVSAGDISGTLVKPGGSPLSGVDLELYDKKGLLLKKSRTEYDGYFLFESVPYGEYMVRIAPLSASITGMKPELSGPILVGRNNPSAEQGVIVAQPLERIAQNKSSDEAGDINK
>NZ_CP018154.1|WP_072560121.1|355048_355888_+|hypothetical-protein
MISTIRKNLSACIAAIGLAAVSLIPLQPAMASGDLLVAPTRVILDSQRGTEVILNNIGTEETTYRISLELRRMNDLGRLDEVAEEDATEKESTALSLIRYAPRRVTLPPNQPQAIRVGLNNLKDLADGEYRAHMMFRAIPNTASVAETQDAGGGLQIQLIPIYGITIPIIIRKGNISASAAIANPRLAQDETGANLFLMDLSREGDRSVFGEIYVTKAGQSEPLMVAKGIAIYPELDKRTIVVPITAEQAATLNGNVTISYYEAPEAGGGLISEIKTTM
>NZ_CP018154.1|WP_072558410.1|354365_354863_+|DUF4402-domain-containing-protein
MLNKMKFAAAATILAASMGSTSAFAATQTANAQAEIISAVELSTVADLNMGVVAAGAAGGTVTLNASTGARTCSAALTCVGTATRGSFQVTNATNGYTVNLSVSASTNLTGAGAPMTLTLTPSATSIVFNSAALETVYVGGSLAVGANQTAGVYSGTYSVTANYN
>NZ_CP018154.1|WP_072558409.1|353252_354191_+|ParB/RepB/Spo0J-family-partition-protein
MSETKPIIKKKGLGRGLDSLLGEAIRGNNNSNSQQDNNIDSGEGDSRISIISVADIQPHPGQPRRHFAEGPLNELAASIAKHGILQPIVVRPRGKGYQIIAGERRWRAAQRARLHEVPAIIRSFSDSEALEIALIENIQREDLNPIEEAEAYHRLIEEFGHSAAELGKLVDKSRSHIANMIRLLDLPKSVRDLVVEDRLTMGHARALINAEDSLSLAVQIMKQGLSVRQTEALVRKEKRGDDIKDNHAAALSKDKGKIDSDLLAVEDHLSDILGLKVKIVKGDSPDQGSVTFHYNSLDQLDMLCMRVTGEQI
>NZ_CP018154.1|WP_072558408.1|352473_353256_+|ParA-family-protein
MIIISIANQKGGVGKTTTSINLATALAATGLCTLLIDLDPQGNASTGLGLTQADRENNSYKILLGEASVEESVVDTMVPKLQILPATVDLSGAEVELVDLEHRTHRLQMALKQADQAKWDVCLIDCPPSLGLLTINAMVASDMLLVPLQCEFFALEGLSQLLQTVDRIQQRFNPQLSIIGVALTMYDRRAKLTDQVADDVRACLGQLVFDTVIPRNVRLSEAPSHGVPALIYDHKCTGSEAYLKLAREVISRLPQEEMAA
>NZ_CP018154.1|WP_072558407.1|351817_352477_+|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MDEHQARQWLETECRVSRETMEMLEQFCAFLYEEMQGQNLIAPASFEHIWTRHIVDSAQLIKLLPADSHQWQNRKWLDMGSGAGFPGLIIAMLTSWRVTLVESRRKRIEYLLRAVEKFGLQQRVTIAGERLENVPTAPFSVISARAFAPLPKLLDISERFSTNKTCWLLPKGQNAARELEESSLYWDLDFEIRPSITDADAGILVGRVHGQNRKMRGKR
>NZ_CP018154.1|WP_072558415.1|363232_363640_-|DUF2282-domain-containing-protein
MAIFYWHEYHIWIIDAPMTQDNRLKMKHLIGGLISIGALISCSDNESSKIRYSTEDKNIHIPTSKLSAREKCYGIALAQKNDCATWSSQRMEMVNCAGTAQKDYLPDKWKYVQTGNCTASGGTLSPKETPYISEK
>NZ_CP018154.1|WP_072558416.1|363673_364831_+|tRNA-guanosine(34)-transglycosylase-Tgt
MSNRFNFKINARDGKARTGQIEMMRGNIQTPAFMPVGTAATVKAMRPAEVAATGADIILGNTYHLMLRPGAERMARLGGLHQFMKWDKPILTDSGGYQVMSLSSLRKLTEEGVTFKSHIDGSKHVLTPERSMEIQRLLGSDIVMAFDECPPNGVDQKQAEKSMALSMRWAKRSRDGFNSGEEHAARSALFGIQQGSLDERLRGESAAALIDIGFDGYAIGGLAVGEGQEAMFNVLDFAPEQLPDDKPRYLMGVGKPDDLVGAVARGVDMFDCVLPTRSGRNGQAFTHFGPINIRNAKFAEDQGPLDEKCVCPVCGGDGSKQGMSSGWSRAYIHHLVRSGEILGAMLMTQHNISYYQILMANMRKAIAKGEFAAFQADFNRDYFGG
>NZ_CP018154.1|WP_072560125.1|364841_367550_+|bifunctional-[glutamine-synthetase]-adenylyltransferase/[glutamine-synthetase]-adenylyl-L-tyrosine-phosphorylase
MQDIENAIARSQQYSPFLRDIWGKFPEIDCQIADGKFDEAMASAYAIKGADIAETLRKQRSAIALITAIADLSGHWDVSKVTRALSDFADHAVDMAVGHAIAQHIGADYDAMENPCAGFAVIALGKHGGRELNYSSDIDPILLYDPETLPHREGEDVAKAAVRIGRRVVDILSARDGHGYVFRVDLRLRPTPEVTPIVLTVNAAISYYESSAVAWEQAAFIRARAAAGDVALGQYFLDAIKPFIWRRSIDFGQIQNIHSMIRQIRNHYKKGQEIGLGFDVKKGRGGIREVEFFAQAHQLIYGGRNGELRIADTSEALRRLSHFGHVDADISNDLIEGYAYLRQVEHRLQMVDDRQTHELPQHEAQLEQLVQLDGGADMHSWMEKLQQIVQNISSHYDILIEATAEENMADGAGQGKGNISIKEQLTAFDMDETACERRIARWQSDKIRCLRSASARKSFEQILPSLLHALAAAPDPKNALNRFDDIIDKLPSAVNFFHLLMARPDTMARLADILSYAPILADELTRNISLFDTLIDPNVAALPQSLAEMRQYFETQIIGDEYELILDQVRTHVSELRFAAGVQLLSGQQKSEHLAQIYSHIAEVATEILVDATRHIFEQSHGKIEGSDLIILALGRLGGQALTHASDLDLIFLFTGEHDAQSNGRRPLGATHYYNRLTQRIIGALTVQTSSGPLYEVDCRLRPSGNKGLLCATTESFDQYQHKEAWTFEHMAMMRARTIYGGDAARGQIGDILDGIHHIKRDEALIHADCIKMRRDMDEHKPASGPLDIKKMTGGLIDIEFMIHYLQLTRQCALSPNLSHALQILIKQGHLPENLYDAFTLQSGLLIYLRLFVPDLAEPSPPIQKFIASALGMENWDALIDQLQKSRQLVTQIWTEIFGQER
>NZ_CP018154.1|WP_072558417.1|367597_368056_+|peroxiredoxin
MTEIGGKIPSITLLDHLENKVEMANITHPAVIYFYPKADTPGCTKEGQQFTEKFDDFTSLGVNIYGVSKDKPAKLEKFAAKYDFKHHLLSDEESNFTEEMGVWVEKNMYGRKYMGIERATFLTDKSGKIAQIWRKVKVKDHAEAVLEAAKGL
>NZ_CP018154.1|WP_156874225.1|368103_368925_+|DUF455-family-protein
MQKPSLVAACKEILLVSDAMTKVKCARKCARDWRAGKLSIGNAADAQSMPDQPYFLDKPILLPPQQMPKLGRAGNEKNRIAMIHSFAHIEYAAIDLAFDLVGRFAHLFPPEFVDDWIMVGADEAMHFAILERRLRQYESFYGEYPAHGSLWDAAYRTRHDVAARLAVVPMVLEARGLDVTPATVKRFEQNGDVKTAKILNRIYHDEIRHVGAGAKWFAFTANLHFNQCGESHDEYWKRLVKTYFKGGLKPPFNDSARQKAGLSRECYHALAKA
>NZ_CP018154.1|WP_156874096.1|369110_369737_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MGTAMTSTAHANSAASASDSFRVDTNKKNETALGKSSSEFRGLFNKFETGDDSATAQVFIPSINPVESMNMTSQYGYRTDPFRGRRANHKGLDIAGPIGTPIYATADGIVGRARWVNGYGKYIELNHGNAIQTRYGHMSALNVSENERVTKGQIIGFMGSTGRSTGSHLHYEVRIAGEPVNPTAFLAASNYGLASVKDDANKGEGGPE
>NZ_CP018154.1|WP_156874226.1|369891_370224_+|iron-sulfur-cluster-assembly-accessory-protein
MDIESVILLPNAARRVSEIAQKLGKEAVLRLSVDGGGCSGFQYRFGLADMIDSDDIMVSCDDAKLVVDPISFDLVKGSAVDFVESLGGKSFQVTNPQAQSGCGCGTSFSI
>NZ_CP018154.1|WP_072558421.1|370273_371065_+|exodeoxyribonuclease-III
MTKISTFNINGIKARTPRLLEWLDETAPDIVCLQEVKSQDKDFPKDMFEKAGYGVIFHGQKSFNGVAILAKGQEPKEIQRGLEGEPEDEQARYLEAEILDKSGNALRVASIYLPNGNPLPGPKFDYKLRWMQRLRNRAQILLNEEIPAILCGDYNVIPRDEDVFSVSAMASDALMQPESRAAYRQYLGDGWSDAFVTKYPAGGVWTYWDYQAGAWPRDNGFRIDHFLLSPIAADRLEHAAVDKEHRGREKASDHAPLWVQLRD
>NZ_CP018154.1|WP_083550459.1|371072_372200_-|DUF1501-domain-containing-protein
MNRRSLLQHIAIAMAAGAGAGAPSIAFAQINSPKKLIYILQRGAADGLDLVSPIGDADFAALNGRAETDRSNYQHIDAMFSLHPNFVELGKMMRTGQANIVHAIASTYRERSHFDGQNILESGGITPYARKDGFLNRLIPLIDAQSRKSLALSSSIPLALRGAAEVGNFAPTKLPTANDDLINRLTMLYAQDEMLAPIWQSAIDTKNLAGDLSAENGRNGEKIGQLAANLMKGSQAAQLLMIETTGWDTHAQQFGRLNAQVRGLDAMLGAIKSGLGLDWDNSLVIIATEFGRTAAMNGTRGTDHGTASVLMMCGGNINSGGKIIADWPGLSQSALYEGRDLRPTMSMELEISRALAAHYGLDVARVQRSLYPDMV
>NZ_CP018154.1|WP_072560127.1|372205_373663_-|DUF1800-domain-containing-protein
MAKTYFFHNRFGLGGRANEAALYRNFDDKQLQNKLLQQLKEYNPAPPIYASLASTKEIAAEFSEYQMLREIAQQQRRQDGGAAKPSDDIAIDEMKVQKEVRAIRRHYIDAATARIGAALQTDTPFAERLVHFWSNHFAISSDKLQVTAFAGNYERDAIRPNIMGSFANLLKSAVRHPAMILYLDQAQSFGPNSMIMKRRNRRNPESNGGLNENLAREILELHSLGVRSVYTQNDIQQLAMAMTGWSVAIGPQAKRIARFAGNVAPDDSFFVDMLHEPGTRSFLGKTYPDIGKDQSTHMLDDVAVHPATARFIATKLARAFTTDTPPPALISALENAFMQSGGYLPSLYKILIMHEESWNAAHIKYKSPWEWAISAMRAFGTKQADNPRNIIALLDQMGQPIWKPGAPSGFPDLNDHWMGASALMARAELADIIGGLSKNAVDPRLFASLIMNDMLQKHSETAISRADSPSQGIAMALMAPEFLRR

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Crispr_ID: NZ_CP018154_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018154_3

562860-562971

Orphan

Consensus_repeat	Method
AAAATATTGGAGCCTAGGCCAAGGAGAAAATAAAACTCCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018154_3

>merge|NZ_CP018154|3|562860-562971|CRISPRCasFinder
AAAATATTGGAGCCTAGGCCAAGGAGAAAATAAAACTCCCCGCAGGCGGAGCATATTTTTAGAATAAAAGAAAATATTGGAGCCTAGGCCAAGGAGATAATAAAACTCCCCG

>NZ_CP018154|3|3|562860-562971|CRISPRCasFinder
AAAATATTGGAGCCTAGGCCAAGGAGAAAATAAAACTCCCCG	CAGGCGGAGCATATTTTTAGAATAAAAG
AAAATATTGGAGCCTAGGCCAAGGAGATAATAAAACTCCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018154.1\|WP_072558565.1\|558738_559521_-\|cytochrome-c-oxidase,-cbb3-type-subunit-II	unknown	unknown	gnl\|CDD\|237725
NZ_CP018154.1\|WP_156874106.1\|565559_565736_-\|DUF645-family-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072558562.1\|556195_557659_-\|cytochrome-c-oxidase-accessory-protein-CcoG	unknown	unknown	gnl\|CDD\|274278
NZ_CP018154.1\|WP_072558563.1\|557658_558591_-\|cytochrome-c-oxidase,-cbb3-type-subunit-III	unknown	unknown	gnl\|CDD\|129864
NZ_CP018154.1\|WP_156874108.1\|569309_569558_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072558561.1\|555712_556195_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377555
NZ_CP018154.1\|WP_072558575.1\|569743_570925_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173845
NZ_CP018154.1\|WP_072558568.1\|562082_562775_-\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP018154.1\|WP_072558560.1\|553369_553549_-\|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS	unknown	unknown	gnl\|CDD\|129927
NZ_CP018154.1\|WP_072560203.1\|553562_555707_-\|cadmium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319782
NZ_CP018154.1\|WP_072558569.1\|563229_563550_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370551
NZ_CP018154.1\|WP_156874107.1\|565724_566033_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072558564.1\|558580_558742_-\|cbb3-type-cytochrome-c-oxidase-subunit-3	unknown	unknown	gnl\|CDD\|368492
NZ_CP018154.1\|WP_072558572.1\|566029_566659_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|234579
NZ_CP018154.1\|WP_072558570.1\|563789_565121_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP018154.1\|WP_072558574.1\|568799_569078_+\|integration-host-factor-subunit-beta	unknown	unknown	gnl\|CDD\|178925
NZ_CP018154.1\|WP_072558566.1\|559532_561194_-\|cytochrome-c-oxidase,-cbb3-type-subunit-I	unknown	unknown	gnl\|CDD\|237726
NZ_CP018154.1\|WP_156874228.1\|561377_562049_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|225589
NZ_CP018154.1\|WP_072558573.1\|566883_568590_+\|30S-ribosomal-protein-S1	unknown	unknown	gnl\|CDD\|235775
NZ_CP018154.1\|WP_072560205.1\|565125_565392_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018154.1\|WP_072558565.1\|558738_559521_-\|cytochrome-c-oxidase,-cbb3-type-subunit-II	gnl\|CDD\|237725	PRK14487, PRK14487, cbb3-type cytochrome c oxidase subunit II; Provisional.	4.54266e-151
NZ_CP018154.1\|WP_072558562.1\|556195_557659_-\|cytochrome-c-oxidase-accessory-protein-CcoG	gnl\|CDD\|274278	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.	0
NZ_CP018154.1\|WP_072558563.1\|557658_558591_-\|cytochrome-c-oxidase,-cbb3-type-subunit-III	gnl\|CDD\|129864	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport].	5.29726e-115
NZ_CP018154.1\|WP_072558561.1\|555712_556195_-\|hypothetical-protein	gnl\|CDD\|377555	pfam05751, FixH, FixH. This family consists of several Rhizobium FixH like proteins. It has been suggested that suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalyzed by FixG.	3.15662e-31
NZ_CP018154.1\|WP_072558575.1\|569743_570925_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173845	cd01156, IVD, Isovaleryl-CoA dehydrogenase. Isovaleryl-CoA dehydrogenase (IVD) is an is an acyl-CoA dehydrogenase, which catalyzes the third step in leucine catabolism, the conversion of isovaleryl-CoA (3-methylbutyryl-CoA) into 3-methylcrotonyl-CoA. IVD is a homotetramer and has the greatest affinity for small branched chain substrates.	0
NZ_CP018154.1\|WP_072558568.1\|562082_562775_-\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	2.5535e-42
NZ_CP018154.1\|WP_072558560.1\|553369_553549_-\|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS	gnl\|CDD\|129927	TIGR00847, Nitrogen_fixation_protein_FixS, cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	5.07952e-17
NZ_CP018154.1\|WP_072560203.1\|553562_555707_-\|cadmium-translocating-P-type-ATPase	gnl\|CDD\|319782	cd02092, P-type_ATPase_FixI-like, Rhizobium meliloti FixI and related proteins; belongs to P-type heavy metal-transporting ATPase subfamily. FixI may be a pump of a specific cation involved in symbiotic nitrogen fixation. The Rhizobium fixI gene is part of an operon conserved among rhizobia, fixGHIS. FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalyzed by FixG, an iron-sulfur protein. This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP018154.1\|WP_072558569.1\|563229_563550_-\|hypothetical-protein	gnl\|CDD\|370551	pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid). Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.	1.12777e-17
NZ_CP018154.1\|WP_072558564.1\|558580_558742_-\|cbb3-type-cytochrome-c-oxidase-subunit-3	gnl\|CDD\|368492	pfam05545, FixQ, Cbb3-type cytochrome oxidase component FixQ. This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon.	7.10071e-15
NZ_CP018154.1\|WP_072558570.1\|563789_565121_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NZ_CP018154.1\|WP_072558574.1\|568799_569078_+\|integration-host-factor-subunit-beta	gnl\|CDD\|178925	PRK00199, ihfB, integration host factor subunit beta; Reviewed.	4.47951e-42
NZ_CP018154.1\|WP_072558566.1\|559532_561194_-\|cytochrome-c-oxidase,-cbb3-type-subunit-I	gnl\|CDD\|237726	PRK14488, PRK14488, cbb3-type cytochrome c oxidase subunit I; Provisional.	0
NZ_CP018154.1\|WP_156874228.1\|561377_562049_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|225589	COG3047, OmpW, Outer membrane protein W [Cell envelope biogenesis, outer membrane].	1.70006e-53
NZ_CP018154.1\|WP_072558573.1\|566883_568590_+\|30S-ribosomal-protein-S1	gnl\|CDD\|235775	PRK06299, rpsA, 30S ribosomal protein S1; Reviewed.	0
NZ_CP018154.1\|WP_072558572.1\|566029_566659_+\|(d)CMP-kinase	gnl\|CDD\|234579	PRK00023, cmk, (d)CMP kinase.	3.19861e-80

>NZ_CP018154.1|WP_072558568.1|562082_562775_-|Crp/Fnr-family-transcriptional-regulator
MMDCSECVVRNRAICAGLNPDELAILSNMGHKKTLKAGDILLWEGEASVIVANILNGVLKLSTNNENGDEQIVGILFESEFVGRPFGTKNPFTITAVTDTKLCVFGRSDFEQFSASHPDLQQKLLEQSLNGLDQTRHWLAMLGHKSASAKIATFLLVLSERLAANNCKSEAFLDDFILPFDRQQIANILGLTIETTSRQLSRMRNDGVIDLPTRRKVVINDRYAMEALAG
>NZ_CP018154.1|WP_156874228.1|561377_562049_+|outer-membrane-beta-barrel-protein
MSFGILVFSSFSPEAQAQIGTETGAGDVQIKLLATYVIPDGKITKVKLDNVGLPMNSQTKANDNVVPTIVVEYFAADNISIETIAGVTQHDVDGVDGFAGAEAVSNAKIIPATLTVKYHFGDGKGFKPYVGAGPSYFLFLGEKSGATTKTLGANKVKLDDSLGFALQTGFDLPLNENGLSMSLDAKRYFLKTDASWFVGNNKVLETRHKLDPWVISAGVAYRF
>NZ_CP018154.1|WP_072558566.1|559532_561194_-|cytochrome-c-oxidase,-cbb3-type-subunit-I
MDKLVFRAGGWMVLAFFAVIAMALAVDGPFAVHMGIVAATCLLIMWLIISKADYGALARGALKMPANEGVYDDDLIRLGVIATLFWGLAGMTAGLYIASQLAFPALNLNSEYISFGRLRPLHTSAVIFAFGGNALIATSFYVVQRTCRARLAFPDLARFVFWGYQLFIVLAATGYLMGVTAAKEYAEPEWYVDIWLTIVWVAYLIVFVGTLVKRNEPHIYVANWFYLAFIITIAMLHLVNNLSMPASIFGSKSYAAFAGVQDALTQWWYGHNAVGFFLTAGFLAMMYYFVPKQAERPVYSYRLSIIHFWSLIFLYIWAGPHHLHYTALPDWAQTLGMVFSIVLWMPSWGGMINGLMTLNGAWEKIRTDPIIRMMVMALAFYGMSTFEGPMMSIKWVNSMSHYTDWTVGHVHSGALGWNGMITFACLYYLVPRLWGRPRLYSLRMINWHFWLATIGIVFYAASMWVAGIMQGLMWREYGADGYLVYSFVESVTAMFPMYVIRALGGAMYLAGFIIMIINVWKTLLGQIRDEKPMTETPYEAATDRPIITAVPAE
>NZ_CP018154.1|WP_072558565.1|558738_559521_-|cytochrome-c-oxidase,-cbb3-type-subunit-II
MTQKNKEGMFSHKKLERNVTMLGALALVTVAIGGIVEIAPLFWIDNTVEKVDGMRPYTPLELAGRNIYMREGCYNCHSQMIRPFRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGRYSDEWHKAHLIDPRSVVPESIMPGYAFMANRELKTGNMSNDLTALSRVGVPYSKESIAAANADIQAQANPNADAADLQKRYPKAQVRDFDGDPNRVTEMDALIAYLQMLGTLVDVEKASAQSEAAAASEKAQKRGAK
>NZ_CP018154.1|WP_072558564.1|558580_558742_-|cbb3-type-cytochrome-c-oxidase-subunit-3
MSYDFLRHLADSWGLLFMSILFLILVGWTFRKGASKHHHDAAHMIFKDDEHGG
>NZ_CP018154.1|WP_072558563.1|557658_558591_-|cytochrome-c-oxidase,-cbb3-type-subunit-III
MADKKYIDEATGTETVGHEWDGIQELDTPMPRWWLWSLYATIIWGVIYVILYPAWPMVNSATKGVLGWSSRGELHAEMAAVEKERAPILAALASTPLEEIAKDERLMQTAIQGGSAAFKVHCVQCHGSGADGVRMGSGYPNLNDDDWLWGGDLASLEYSIKHGIRNPDHAETRQSQMPAFGEILSGTEINNLTAYIRTISGQQKGEISNATKILFANNCASCHGKDGKGGREFGAPNLTDKIWLYGGDAAAIRTTIEKSRQGVMPRWGGRLDDVTIKMLTLYVHSLGGGEANLAKIVDEDKGKAEAGRAK
>NZ_CP018154.1|WP_072558562.1|556195_557659_-|cytochrome-c-oxidase-accessory-protein-CcoG
MANPASPPVQETQLYAARTGVYPKAVDGFFRRFKWAVMAVTLAIYYITPWIRWDRGPYAPNQAVLVDLANRRFYMFQIEIWPHEFYYVAGLLIMAGIGLFLVTSAVGRAWCGYACPQTVWTDLFQHVERFVEGDRNAQIKLANAPWGIKKAAKRLSKWVIWLFIAFWTGGAWIMYFADAPTLTRDFWAGDAAFVAYGTVGVLTAITFIFGGFLREQVCIYMCPWPRIQTAMLDEKSLIVTYKDWRGEQRGSVKKAEKNPDAFGDCIDCNQCVAVCPTGIDIREGPQIGCITCALCIDACDNVMAQIGRPRGLIDYCTFDDAEVEKSGGQAKPILKTLLRPRTLIYFAIWGSIGLAMLFTLGQRTRLDLAVQHDRNPLYVQLSDGYVRNNYTVKLRNMETRPRQVELYISGLSQAQIWPSEGKRGDYADRLNLTLPANGVTKLRLFIAAPGDGAKQENFNIGTRPLDDDRGGARRGDSDDVIFERPVN
>NZ_CP018154.1|WP_072558561.1|555712_556195_-|hypothetical-protein
MAENVKQIRTKKPFTGWHMTAILVAFFGVIMAVNFTMAHLASSTFGGTVVDNSYVASQKFNGWLQQAETQENLGWTHEISLSADRHIMVKMTKDAKPLSPLKIIAAAHHPLGRAAPLNFTFNHDEMGNFRSARALPPGRWSVIVSARQNSNIAQYKADLK
>NZ_CP018154.1|WP_072560203.1|553562_555707_-|cadmium-translocating-P-type-ATPase
MAKNLDPQPAIESNFAVPDIRCAGCISKLENGLILSPQIISARVNFTTKQVVVHHIAGANMADIIAAFALLGFEAHQIEKNSIDNIQNDSKSLLMAMGVAGFAMMNIMLLSVSIWSGAEGSTRDMFHWLSAAIALPTIAYSGRPFFTSAWRALRHGGTNMDVPISIGVILASGLSLYETATHGPHAYFDGAVMLLFFLLTGRWLDSVMRDRARSGVTSLLKNMGNGAMVIDEKGHSHFVDSTALLPHMVMIIAAGERLPADGVIIYGKTQLDLSLLTGESQPCPANVNDKVLAGTLNIGSPIHVRITEIGAFTAIADIARLMGEAAQSKSRYVRIADRAAKLYAPAVHLLALLAFAGWMIMGAGVHQSLLIAVAVLIITCPCALGLAVPAAQIVTAGALMRSGILVKDGSALERLAEIDMAIFDKTGTLTMGRPEPVNLHDATDLQCALMLSLAQHSRHPLSKALTHALQQMNISPAIIEDIDEDAGMGIGAKWQDIDIFLGRHFNDEASNSPVNNDEETLSTNLFMDGKSVFTIFFTDNLRGDAKDVVHDLKLMNIPASIMSGDKAKAVAPITKLLGMTAQTAMLPQDKLAAIKRFEQAGHHVLMIGDGLNDGPALAAGHASMAPGSASDAGKNAADFIFMGDNLRPIIQAINAARKTKSIVRQNFQLAIGYNIFAVPLAIFGYVTPLIAALAMSGSSLIVVANALRLRGAAK
>NZ_CP018154.1|WP_072558560.1|553369_553549_-|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS
MNGLIILIPIALGLGLLGLAAFFWTLKRGQYDDLDGAALRILLDGDGDEKQNEDKDASK
>NZ_CP018154.1|WP_072558569.1|563229_563550_-|hypothetical-protein
MVKAEWGTKRTCPKCGTRFYDLGNEEPIECIECGEKWHAEPVLKSKQPMPFEEDKKKDDADLADDDLDIDVDSVDDDDSPDNDVDLGTDDDIGVTKTDDDDNKDDN
>NZ_CP018154.1|WP_072558570.1|563789_565121_+|3-phosphoshikimate-1-carboxyvinyltransferase
MSDVHPIPREFIGSGPLSGTVKVPGDKSISHRSLMFSALAVGHSQVSGLLEGEDVLSTAAALRAMGARIERGDDGIWHIDGVGVGSLLQPTTPLDMGNSGTSARLLMGLVASHAIDTIFIGDDSLSKRPMGRVSVPLSQIGAQFSGTNGDYLPMTVKGVIGAAPIQYRLPIASAQVKSAMMLAALNISGVSEIIEPIATRDHSERMLRGFGADLKVEQDEDGTRHIFVRGEAELKPQNIDVPGDPSSAAFPVVAALITPGSEVRVTNVGMNPTRTGIYKMLIEMGADLTFVNEREVGGEPVADIIAKYSSLSGIDVPPEIAPSMIDEFPIFFVAASMAKGRTMTSGLDELRVKESDRLALMAAGLAAIGARVKEVEDGLIIDGSDGEALAGGAMINSALDHRIAMSFAVAGQNCLNPVAVDDISPIATSFPTFEKMMEELANG
>NZ_CP018154.1|WP_072560205.1|565125_565392_+|hypothetical-protein
MSSFAADIIGFVGSFFIVAAFAYSNVTKAMNVLLFNILNLIGAALLTISLTVNFNLPTMVLEIIWMAIATFGIAKALIERRKNNAAKQ
>NZ_CP018154.1|WP_156874106.1|565559_565736_-|DUF645-family-protein
MFHHILVEKAAIIAVIRHAMAFRTLNNGQILFDIFKFCLPCIGGKAKQCLFRHCGLRL
>NZ_CP018154.1|WP_156874107.1|565724_566033_+|hypothetical-protein
MVEHYFWDDDMILVVKSVSTKNFNGKEIRALGIGKARDKDNVVANVQKFLPDAKMTCLSADEAGQGDGISSCGAEMGEGWFTLLFDSNNQLISARMDAYHFT
>NZ_CP018154.1|WP_072558572.1|566029_566659_+|(d)CMP-kinase
MIIAVDGPTASGKGTIAKALSAHYGLPHLDTGLLYRAVGRQVEINGGNPDNISDALAACYFDEALLNDPILRSEHIGGFASRVSVHVDVRRALDQRQRDFAHQIGGALLDGRDIGTVIAPDADAKLFITASPETRAKRRFDEMMRHGADVVYDDILADIIKRDERDIGRAAAPLIMADDAHLLDTSNLAIDAAVQRAIAMVDDILNGAV
>NZ_CP018154.1|WP_072558573.1|566883_568590_+|30S-ribosomal-protein-S1
MASSPTPTRDDFEAMLNDALGGADGGFEGRVVKGTVTLIENDHAVIDVGLKSEGRVPLREFSTPGKKTELNVGDEVEVFVDRIENVNGEAMLSHDRARREAAWDKLEGEFEAENRVDGIIFGRVKGGFTVDLGGAVAFLPGSQVDVRPVRDVGPLMDIAQPFVILKMDRRRGNIVVSRRAILEETRAEQRSGLIQSLTEGQVTEGVVKNITDYGAFVDLGGIDGLLHVTDISYKRINHPSEIIAIGDTVKVQIVRINRDTQRISLGMKQLESDPWEGAIAKYPVGARLSGAVTNITEYGAFIELEAGIEGLVHVSEMSWTKKNVHPGKIVSTSQEVDVVVLDVDLDKRRISLGLKQAQDNPWEAFSQKFPVGTEVEGEVKNATEFGLFIGLDGDVDGMVHMSDIAWGISGEDALHLHRKGEMVKAVVLDIDAEKERISLGIKQLEKGAPAAAGAADTSGLKKGATATVTVLEVRDGGLEVQVGEDGATGFIKRTDLGRDRDEQRPDRFQNGQKLDAMVIGFDRSKKPNFSVKALQLAEEKQAVEQYGSSDSGASLGDILGAALKKTKD
>NZ_CP018154.1|WP_072558574.1|568799_569078_+|integration-host-factor-subunit-beta
MIRSELVKLVEDENPGLKNDEVEKIVDVFFNQITQKLADGGRVELRGFGAFSTRQREARKGRNPRTGESVDVPAKSVPHFKPGKEIREKLND
>NZ_CP018154.1|WP_156874108.1|569309_569558_-|hypothetical-protein
MAQKIIGYNGRWFVVRAGGLEPPRANAQRIFLPTTAFAAVIAPLKKKKPPHLWSGLSLHHGGKIILPALDAARLVSTPSPLS
>NZ_CP018154.1|WP_072558575.1|569743_570925_+|acyl-CoA-dehydrogenase
MIATPDFDFGLGEMADEIRNLVRRYADDKIMPLAAKIDADDWFPRDELWAEMGALGLHGITIKAEDGGLGLGYLEHVIAVEEVSRASASIGLSYGAHSNLCVNQIGRWGNAEQKAKYLPKLISGEHVGSLAMSEAGAGSDVVSMKLRADAATKNGQNGYILNGTKFWITNASHADVLVVYAKTAPEAGSRGISAFLIEKDFDGFSIGQKIDKVGMRGSPTAELVFNDCFVPAENLMGPTHGGVGVLMSGLDYERVVLSGLQLGIMQACLDVVIPYVRERKQFGQPIGTFQLMQAKVADMYVALQSARAYSYAVAKACDADQTTRFDAAGAILLASENAVKVSLEAIQALGGAGYTKDWPVERFMRDAKLLDIGAGTNEIRRMLIGRELIGANG

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Crispr_ID: NZ_CP018154_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018154_4

675080-675233

Orphan

Consensus_repeat	Method
ACGGACTGCACAAAACAATCAGTCCGATATTGGTGACGCGGGATGGAGCAGTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018154_4

>merge|NZ_CP018154|4|675080-675233|CRISPRCasFinder
ACGGACTGCACAAAACAATCAGTCCGATATTGGTGACGCGGGATGGAGCAGTCCCGCCAGCCGGTTCAGCAAAGCTGAAGCGGAAAAACAAAAAACTGCCACGGACTGCACAAAACAAACAGTCCGATATTGGTGACGCGGGATGGAGCAGTCC

>NZ_CP018154|4|4|675080-675233|CRISPRCasFinder
ACGGACTGCACAAAACAATCAGTCCGATATTGGTGACGCGGGATGGAGCAGTCC	CGCCAGCCGGTTCAGCAAAGCTGAAGCGGAAAAACAAAAAACTGCC
ACGGACTGCACAAAACAAACAGTCCGATATTGGTGACGCGGGATGGAGCAGTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018154.1\|WP_072558647.1\|664493_664706_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072558654.1\|678550_679150_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072558650.1\|668673_669021_+\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744
NZ_CP018154.1\|WP_072558648.1\|666066_666411_-\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|225209
NZ_CP018154.1\|WP_072558657.1\|680739_681687_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212492
NZ_CP018154.1\|WP_072560251.1\|681821_682706_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|377694
NZ_CP018154.1\|WP_072558649.1\|667248_668481_-\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	unknown	unknown	gnl\|CDD\|224419
NZ_CP018154.1\|WP_156874112.1\|680086_680671_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_083549906.1\|660347_662291_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372641
NZ_CP018154.1\|WP_072560246.1\|664702_666034_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
NZ_CP018154.1\|WP_072558652.1\|676128_677517_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP018154.1\|WP_083549912.1\|675511_676189_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP018154.1\|WP_072558645.1\|663054_663930_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP018154.1\|WP_156874111.1\|659515_659890_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072558655.1\|679236_680016_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072558661.1\|683812_684394_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238546
NZ_CP018154.1\|WP_072558653.1\|677677_678532_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379653
NZ_CP018154.1\|WP_072558646.1\|664302_664494_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072560254.1\|684632_684794_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP018154.1\|WP_072560248.1\|666548_667217_+\|methyltransferase	unknown	unknown	gnl\|CDD\|226472

Protein	Function_ID	Function_description	E-value
NZ_CP018154.1\|WP_072560251.1\|681821_682706_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|377694	pfam06719, AraC_N, AraC-type transcriptional regulator N-terminus. This family represents the N-terminus of bacterial ARAC-type transcriptional regulators. In E. coli, these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein's DNA-binding domains. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating. All family members contain the pfam00165 domain.	4.19309e-39
NZ_CP018154.1\|WP_072558650.1\|668673_669021_+\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	2.21763e-23
NZ_CP018154.1\|WP_072558648.1\|666066_666411_-\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	2.00038e-10
NZ_CP018154.1\|WP_072558657.1\|680739_681687_-\|SDR-family-oxidoreductase	gnl\|CDD\|212492	cd05327, retinol-DH_like_SDR_c_like, retinol dehydrogenase (retinol-DH), Light dependent Protochlorophyllide (Pchlide) OxidoReductase (LPOR) and related proteins, classical (c) SDRs. Classical SDR subgroup containing retinol-DHs, LPORs, and related proteins. Retinol is processed by a medium chain alcohol dehydrogenase followed by retinol-DHs. Pchlide reductases act in chlorophyll biosynthesis. There are distinct enzymes that catalyze Pchlide reduction in light or dark conditions. Light-dependent reduction is via an NADP-dependent SDR, LPOR. Proteins in this subfamily share the glycine-rich NAD-binding motif of the classical SDRs, have a partial match to the canonical active site tetrad, but lack the typical active site Ser. This subgroup includes the human proteins: retinol dehydrogenase -12, -13 ,and -14, dehydrogenase/reductase SDR family member (DHRS)-12 , -13 and -X (a DHRS on chromosome X), and WWOX (WW domain-containing oxidoreductase), as well as a Neurospora crassa SDR encoded by the blue light inducible bli-4 gene. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.81327e-90
NZ_CP018154.1\|WP_072558661.1\|683812_684394_-\|hypothetical-protein	gnl\|CDD\|238546	cd01126, TraG_VirD4, The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.	6.38839e-12
NZ_CP018154.1\|WP_072558649.1\|667248_668481_-\|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein	gnl\|CDD\|224419	COG1502, Cls, Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism].	3.37612e-44
NZ_CP018154.1\|WP_083549906.1\|660347_662291_+\|hypothetical-protein	gnl\|CDD\|372641	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	1.03868e-10
NZ_CP018154.1\|WP_072560246.1\|664702_666034_-\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.35016e-31
NZ_CP018154.1\|WP_072558652.1\|676128_677517_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.01861e-33
NZ_CP018154.1\|WP_083549912.1\|675511_676189_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	4.10283e-49
NZ_CP018154.1\|WP_072558645.1\|663054_663930_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.36531e-46
NZ_CP018154.1\|WP_072558653.1\|677677_678532_+\|hypothetical-protein	gnl\|CDD\|379653	pfam14579, HHH_6, Helix-hairpin-helix motif. The HHH domain is a short DNA-binding domain.	0.0051887
NZ_CP018154.1\|WP_072560254.1\|684632_684794_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	7.75674e-11
NZ_CP018154.1\|WP_072560248.1\|666548_667217_+\|methyltransferase	gnl\|CDD\|226472	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism].	4.67387e-25

>NZ_CP018154.1|WP_072558650.1|668673_669021_+|DNA-directed-RNA-polymerase-subunit-omega
MARVTVEDCIDKVNSRFDLVLVAAERARQISGGDELTIDRDRDKNPVVALREIAEQTIKPENMKEELVQSMQKILPDEEDEADEVGSLSQSAEALRLTAAAPTRTAAVARDYDRA
>NZ_CP018154.1|WP_072558649.1|667248_668481_-|phosphatidylserine/phosphatidylglycerophosphate/-cardiolipin-synthase-family-protein
MDFKGQFKKFSVAEHDLVILLDAEARLNAYCAMIKKAQNSIHIIIYMIADDETGNEVKAALIAALNRGISCSMIVDSFGSAELPDSFFDDYRKAGGKISYFSARWSLHYLVRNHQKLLIIDGQHCLVGGYNLTNNYVGRSGENSWEDLGLIISGPKVRPMQDYFYQLGDVNKGGKISFRALRQLLNNWPMDDEDISWHIGGPKNRLSPWAKSVKSDLETENSLMLVMAYFSPSQAFVRRIAKIAKRGNATLLLAGKTDNKATMAASRLLYKYLLKRQAKIYEYQKLPLHMKLMVFDNHIYIGSSNMDIRSLFINMEIMLRVRDKQVADFMRSFIEDKIKDSEEITLSMHKSRHNYLARIHSSFAYFLVNVVDYTLGSRIKIGQIKTGFLSRWARLRRNDADQISDMKNEE
>NZ_CP018154.1|WP_072560248.1|666548_667217_+|methyltransferase
MTSPSHGSSAATSLEKRGILDKIGDKLQSLSGPWGVFFKGFLKHPVMVGSIIPSSDRTVNKMLAPVDWENTKLFVEYGPGIGTFCQPVLDRLKPDATLLVIDLNPDFIEYLQKTIKDSRFIAVHGSAADVNEIIKAAGHDHADYILSGLPFSTLPNNLGPIIAKETARAIRTGGAFLVYQFRAKAREFMEPHFTHIDDGFEIWNILPCHLFWGWKDKDSTED
>NZ_CP018154.1|WP_072558648.1|666066_666411_-|antibiotic-biosynthesis-monooxygenase
MEHLPALHPSSIPSGAVAVIFSSIRTPEYEDEYQLAAGQMEDLASRQKGYLHFMALRADNHFGIAISYWSDMQSAKNWRDNKEHARVREMGRDKFYSSYSIQICVVEHDYSWSK
>NZ_CP018154.1|WP_072560246.1|664702_666034_-|MFS-transporter
MQKPQNNSPKNAPKIAPKIGSVPNDRLVILFLVMMVAAAGNTAMQATLPAISSTLKISDVWVSMAFSWSALLWVWTAPKWARMSDKRGRKLLMSWGMWGFISSMLLCGVSLWLGLHGWIGAGLTFIIFALFRSLYGGFGSAAPPAVQAYLAARTEAEERSKAMALLASSFGLGTVIGPAVAAYLVFEPFGLAGPLFMFGAFGIAVWAALKLRLPNDTPKFAARGAVASYPSSASVNNAPDGDIDENDNGQSTDRAPLNLRDSKIFKWLLSGLVVGHAQAILLGVIGFLVRDRLHLYDQPAMAVSMIGSVMFIGAIATLLSQWGLIPLLSLSPSVCVRWGSIAAIIGILIIAIGRDFSTISLGYAISSLGFGLTRPGFTAGASLAVDRSYQGDIAGKVASINGAAYIAAPAIGVALYNYYEPASFALMLSGLIFLLLWGWRKLD
>NZ_CP018154.1|WP_072558647.1|664493_664706_+|hypothetical-protein
MDNGQKQNNKPLIVAALFGIPGLLITLIGPFKGMGDAIKPGLGDLLNGGIGMTLLILAAVAAVAAKKRSN
>NZ_CP018154.1|WP_072558646.1|664302_664494_+|hypothetical-protein
MDKKPEVPFQAALPAIVVTIAAVIQTVVALTTLNQTNLIIAIGCSVVSIFLWKKHFDKSKAEK
>NZ_CP018154.1|WP_072558645.1|663054_663930_-|LysR-family-transcriptional-regulator
MRRLPPLRSLEAFVRVARMGSAKAAANELALSAPALSRRLKALEDFVGKPLFDRKSQSMILNADGKILLDAVSPALDAMAEAVEDLASDGNNFRLRLGVLPLFGSQRLIPKLPELRRIYPKLHIDVDTSAHAEKLLGDVIDAAIIITDKVDPSLYSVRLDQNMVYAIASRTLAAEHKLERPEDLTGQTILVHSEMPEIFKAWCAEVNVPNLRPASIDHMDSGPLMLEAAANGLGVAIMHGSHFSDARDPRLTRLFNFEIQSPYSYWFVCRHRDMRKRVVRLFHDWLIKTDI
>NZ_CP018154.1|WP_083549906.1|660347_662291_+|hypothetical-protein
MLSDLFENTPLTYDPRFLEDHAGSIIKDPTTALVELVANAWDAYATRVDITWPSTEQAFEIKDNGLGMTEEQLNARWKRFNYNRVNELGEYTDPPEDLEGYRKRRAFGRNGKGRFAAFCFSSPFQVEIGKEGIKCSFRMKRTPLKPSPFHIKKLAEEKSTWRGFKIIGEEIQPAGMSADMARSVLSTRFLTNPEFEVFVEGKKVTFEDIPSHGVETIQVQIDAATTVEMVVIDSEKTDRSTKQHGIAWWVTDRLVGACDWKNFEDQSVLDGRREEAKRYTFILKADHLKPDVLADWSGFKQDSESWNQTRKACEDAVRSKLFELTAAKRAETKNQWLENHSSLQHTLPKRSQERLSTALDNIMEKCPSLGPNQVQQVMDVLASMEHAESQYALLAKMQNMSPDDFDNWNDILDRWTTELAKEALDEVEKRLRILAELSNKTADKTTDEVQDLQPLFERSLWIFGPQFESIEFTSNKGITTVIRELFGVQEKAETIRPDFVVLPDSSIGFYSRPNYDDEGDQNGCAVLSIVELKKPGVPLGSKEKDQVWKYVKALEQRGYISRYTKVFGHVLGDQIAAGEDEPRKEWSDSVVIKPWLYTNFIAQGEKRMFQLRDKLAEAPFMQEYLTSKPLEKRTVAPLQGDLLNGGG
>NZ_CP018154.1|WP_156874111.1|659515_659890_-|hypothetical-protein
MNSTIRLLADNTLKHLLSLRQNQLTEWDGIDLSDLSHFLVIQPGDTAAEAEHELGWSLLQNMVDGACYGQPDFTPSWEWIEAHDGWYEFVFIISDDGFGINVFVENHPDTDSDLLAMCREYTKA
>NZ_CP018154.1|WP_083549912.1|675511_676189_-|response-regulator-transcription-factor
MEKWRCLLPDPANKGKKIKMNRFLICDDHELVREAISSSIADEWPDAVFTETKNFPQSWEEVSKGYDLCICDLSMPGASAIEGVSQLKQSAKDMPILIVTGVDDYDLMLQLLNLGVNGFVQKNSGAKVIIAAIKLIEAGERHVPSRLLALMERKNKIDNCAITRLTDQQRKVLQFVAQGRTNKDIAIQLGVAPSTIKSHLETAMRLLGATSRYEAVNIAKSENLL
>NZ_CP018154.1|WP_072558652.1|676128_677517_-|HAMP-domain-containing-histidine-kinase
MGVFEALSVKNKEPKSIDLSVDTIISLSEPETQRRLINPVSQLISQIVNFAAVYTVYHVMNDLVPAPNMLIWVIAAIITLFLTTMAQFIVFFIKPHQTELFTLWIKFDRRIAISNEILAMLTIFLLLPFSHESQRIFATAYFVGYIPMTIFADPGNVTMNRIAIILVIGSFTIFLAIYGNEIENILSALVFAYGCFLFYAVGNIHHIIEKSVLAQSKSDQLTKQLELSLKQTAMERDAKTRFIAAASHDLGQPLQAVNLFSEQFANAQDDISRTRAASAVLRAVAATQNILSHMLNHLRLEADSVTPHLQPTNIFNAVQSVVEQYSGFAAKEKYKLKIVGKAVILNTDPTLFERALGNLIQNAITHSGGNKILICCRIRDRAQQIFVVDNGVGIKPEEREIIFEDYYQGSNSRSITAGGFGLGLSSVRRLAFILGGNAFLYPLWKNGAAFCLTLPIKEKRSK
>NZ_CP018154.1|WP_072558653.1|677677_678532_+|hypothetical-protein
MRYLPTRGSLLSYIAVIGLTSFSPILQAAMLLAAISPVIWAESAHANTIPGVGTVVKKLKSKSTIVVPSDDNGETRLTGLTPGEYSIRLIEGAEEVIMKVGRDGRLAYILYEDVKLASPVADEPRMRQRPQLPVVLRWIEQIKFNGGKSGVKGAFSIAFAGPCDEPPCPVAIKPGGMIDLNNHVVEQLSNGTAHSLEVAHIIAAERNRNGPFTGIEDFALRVCTQTDVDFSQSSIKMGDILIIVLPRSGTKSNLAGFQCRRDEEGIFNLYGKKHNYVGHVTLLR
>NZ_CP018154.1|WP_072558654.1|678550_679150_+|hypothetical-protein
MKNNIFYFGAIIIIAAYAQPAFAAKVGDPCRPKGGGAGHWVKSGITIKCQADPTLRGEKAANKMTHQQDSNKEESVSKSQVASVANSKLPAMASSNPLLNINSMTKADLSPLTIISSEAKALILNFRTPFGYNDANAFATQICSRVSLNFGSTDIQIGSAILQGFQCTKAGLTYTANGNSYSYALPVELTGSAAVPIAP
>NZ_CP018154.1|WP_072558655.1|679236_680016_+|hypothetical-protein
MKINLLLATALSLYFVSPAMAQNAPSDIASACASCVSSVNLAQLGPVRGRPAQAGEAVAIPRGDLLVEGEGNVCCPPITSGKWAQYFVPQQSPGKNLTLTYGYDFVASPALDAQMNAYAPFAALWTPVSHVANSVALVAEVRAWSSSTPPTNWNQSGYTDVYPGKKQLRAWWTNGSGVWTGGGFEQTLRDNNAIAPNHFDPNKSYMIRLSLVLNYKKTPNDNSWFQLPLSCMEKFVTRGSFVSGRVAPNAGLDAFRLKD
>NZ_CP018154.1|WP_156874112.1|680086_680671_+|hypothetical-protein
MSWRDMFLIMMLGLTLTSCSAPEKMGSKHNEINSQPVAVGQQNPNRQAGSWTMVHYIMAFEGKNLDKAMAGLLSAGESSVGKKDFGGPLCLLKKTSSKDNLFTRIKEGVNFGPEWKIIRMSIKNNIVDFYATMEDPQAGRAEMTITGILTDKSTDLVIITDSYQPAPGKGHIHTVMKQENSRIGECIADQDVWQ
>NZ_CP018154.1|WP_072558657.1|680739_681687_-|SDR-family-oxidoreductase
MTYQQFGPNGWTPERLANLSGKTYLITGANSGTGFEAAKILLSKGAKVIMLNRNAEKSYDAMAALKNKFGENADIEFVQMDLADLNSVRSAAKLILEKTPHINALICNAAIAQVPKQSFTKDGFESQIGVNHYGHFLLCGLLFDRIDASLGHIVVVSSLGYKMGIKAIQFDDMNWDKNYQQNSTYCHSKLAQMMFAYELQNKIKNANRNVKVYVCHPGSSATSLISTSANFLTKSIWYLMTKTPMVQSAEKGAYPEIMCATENELEERALYGPTGRMEMVGPVGTGTLLPFAHDEFVMKKLWQITEDNIGYSWRI
>NZ_CP018154.1|WP_072560251.1|681821_682706_+|AraC-family-transcriptional-regulator
MSKEEIKQIIQRVADGAGLMETGIKGVQIFNQIEPIICAPVVYEPCIVAIVSGKKMAILDGISYQFDQEQFMCCPISMPVEAGTPEASPENPLYGVYISLDTRVMTNLAIELESTKPAMRHAVKADVPQAFTLSKWDDDFTEALVRLMRLIEDPIDMKLLGEGRLYELYYTLLKGEAGASVRRSFGVGNDIARSIEYIAAQLNQTISIDDMADFAGMSRAVFHRKFKQATRMSPIQFMKSMRLNHAAMQIAKGVNVNVAAMEVGYVSSSQFSREFKRLYGRSPKQWGSEQKFAA
>NZ_CP018154.1|WP_072558661.1|683812_684394_-|hypothetical-protein
MRSLRTLILTFHGLMRLFWKVLPLFTTLTGYMLFATPIWLGSIFALVLGFAGVLAKYAAAQFERPVTLGGTKGNAATYNPLDFIRIHTPYEVDDARLGAAMLLVPEHSQANHWEREARTLITGLLLYIRHDWDILSQNLVTFRDFLMQDAEEFELLLAKMAASKQENVSRIARGFSQKEPKERSSLISTAKAV
>NZ_CP018154.1|WP_072560254.1|684632_684794_+|helix-turn-helix-domain-containing-protein
MREVATYQKIKEKSVYALIAQGKIPGFKVGGAWRLRRNEIEKWIESKQGDKHE

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Crispr_ID: NZ_CP018154_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018154_5

1239050-1239169

Orphan

Consensus_repeat	Method
GGTTCGAATCCAGTCCTGTCCACCACTTTTCAAACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018154_5

>merge|NZ_CP018154|5|1239050-1239169|CRISPRCasFinder
GGTTCGAATCCAGTCCTGTCCACCACTTTTCAAACAGTATTAACGAACCAGTGTGTTTTTATTTGCCGCAAGACGCGGCGGGCGGTTCGAATCCAGTGCTGTCCACCACTTTTCAAACAG

>NZ_CP018154|5|5|1239050-1239169|CRISPRCasFinder
GGTTCGAATCCAGTCCTGTCCACCACTTTTCAAACAG	TATTAACGAACCAGTGTGTTTTTATTTGCCGCAAGACGCGGCGGGC
GGTTCGAATCCAGTGCTGTCCACCACTTTTCAAACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018154.1\|WP_072559043.1\|1233081_1234866_-\|membrane-protein-insertase-YidC	unknown	unknown	gnl\|CDD\|234942
NZ_CP018154.1\|WP_072559058.1\|1247239_1248043_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP018154.1\|WP_083550537.1\|1236006_1236285_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370603
NZ_CP018154.1\|WP_156874151.1\|1239431_1240412_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072559050.1\|1237083_1237959_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072559053.1\|1240576_1241830_+\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|170080
NZ_CP018154.1\|WP_072559057.1\|1246058_1247243_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
NZ_CP018154.1\|WP_072559056.1\|1245329_1245920_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226791
NZ_CP018154.1\|WP_072559055.1\|1244858_1245197_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
NZ_CP018154.1\|WP_072559060.1\|1248985_1250071_-\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|379191
NZ_CP018154.1\|WP_072559042.1\|1232455_1233082_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	unknown	unknown	gnl\|CDD\|234770
NZ_CP018154.1\|WP_072559051.1\|1238065_1238806_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|349976
NZ_CP018154.1\|WP_072559049.1\|1236460_1237084_-\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP018154.1\|WP_072559047.1\|1235748_1235883_-\|50S-ribosomal-protein-L34	unknown	unknown	gnl\|CDD\|179004
NZ_CP018154.1\|WP_072559059.1\|1248681_1248972_+\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP018154.1\|WP_072559044.1\|1234921_1235131_-\|membrane-protein-insertion-efficiency-factor-YidD	unknown	unknown	gnl\|CDD\|376620
NZ_CP018154.1\|WP_072559054.1\|1241839_1244767_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350192
NZ_CP018154.1\|WP_072560516.1\|1248094_1248523_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
NZ_CP018154.1\|WP_072559045.1\|1235127_1235514_-\|ribonuclease-P-protein-component	unknown	unknown	gnl\|CDD\|234940
NZ_CP018154.1\|WP_072559041.1\|1231678_1232344_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|198303

Protein	Function_ID	Function_description	E-value
NZ_CP018154.1\|WP_072559043.1\|1233081_1234866_-\|membrane-protein-insertase-YidC	gnl\|CDD\|234942	PRK01318, PRK01318, membrane protein insertase; Provisional.	0
NZ_CP018154.1\|WP_072559058.1\|1247239_1248043_+\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	2.43702e-50
NZ_CP018154.1\|WP_083550537.1\|1236006_1236285_-\|hypothetical-protein	gnl\|CDD\|370603	pfam09656, PGPGW, Putative transmembrane protein (PGPGW). Proteins in this entry are putative Actinobacterial proteins of about 150 amino acids in length, with three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.	0.00113
NZ_CP018154.1\|WP_072559053.1\|1240576_1241830_+\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|170080	PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional.	5.74747e-79
NZ_CP018154.1\|WP_072559057.1\|1246058_1247243_+\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	3.57459e-40
NZ_CP018154.1\|WP_072559056.1\|1245329_1245920_-\|HD-domain-containing-protein	gnl\|CDD\|226791	COG4341, COG4341, Predicted HD phosphohydrolase [General function prediction only].	5.21952e-27
NZ_CP018154.1\|WP_072559055.1\|1244858_1245197_+\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	4.21776e-19
NZ_CP018154.1\|WP_072559060.1\|1248985_1250071_-\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	7.21773e-27
NZ_CP018154.1\|WP_072559042.1\|1232455_1233082_-\|YihA-family-ribosome-biogenesis-GTP-binding-protein	gnl\|CDD\|234770	PRK00454, engB, GTP-binding protein YsxC; Reviewed.	9.40665e-97
NZ_CP018154.1\|WP_072559051.1\|1238065_1238806_-\|RNA-methyltransferase	gnl\|CDD\|349976	cd18103, SpoU-like_RlmB, SAM-dependent rRNA methylase related to RlmB. 23S rRNA-M2G2251-MTase RlmB catalyzes the methylation of guanosine 2251, a modification conserved in the peptidyltransferase domain of 23S rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	4.55096e-65
NZ_CP018154.1\|WP_072559049.1\|1236460_1237084_-\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	4.10301e-50
NZ_CP018154.1\|WP_072559047.1\|1235748_1235883_-\|50S-ribosomal-protein-L34	gnl\|CDD\|179004	PRK00399, rpmH, 50S ribosomal protein L34; Reviewed.	1.77175e-11
NZ_CP018154.1\|WP_072559059.1\|1248681_1248972_+\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	7.39802e-32
NZ_CP018154.1\|WP_072559044.1\|1234921_1235131_-\|membrane-protein-insertion-efficiency-factor-YidD	gnl\|CDD\|376620	pfam01809, Haemolytic, Haemolytic domain. This domain has haemolytic activity. It is found in short (73-103 amino acid) proteins and contains three conserved cysteine residues.	1.53623e-33
NZ_CP018154.1\|WP_072559054.1\|1241839_1244767_+\|hypothetical-protein	gnl\|CDD\|350192	cd18805, SF2_C_suv3, C-terminal helicase domain of ATP-dependent RNA helicase. The SUV3 (suppressor of Var 3) gene encodes a DNA and RNA helicase, which is localized in mitochondria and is a subunit of the degradosome complex involved in regulation of RNA surveillance and turnover. SUV3 exhibits DNA and RNA-dependent ATPase, DNA and RNA-binding and DNA and RNA unwinding activities. SUV3 is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.	4.12787e-32
NZ_CP018154.1\|WP_072560516.1\|1248094_1248523_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	3.76318e-58
NZ_CP018154.1\|WP_072559045.1\|1235127_1235514_-\|ribonuclease-P-protein-component	gnl\|CDD\|234940	PRK01313, rnpA, ribonuclease P protein component.	6.77861e-17
NZ_CP018154.1\|WP_072559041.1\|1231678_1232344_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|198303	cd03194, GST_C_3, C-terminal, alpha helical domain of an unknown subfamily 3 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	4.88688e-58

>NZ_CP018154.1|WP_072559051.1|1238065_1238806_-|RNA-methyltransferase
MNRRRRPTEKKGNNPRFWGRHAVEAALNNPNRTILKLWGTRESIAELDPPADITVNYCQATDMARLVPGDTPHQNIIAELLPLEDKWLSEIVPEDPNDIRPILILDQITDPHNVGAIFRSAAAFNAVAIITQDRHSPAETGTLAKAASGALEIVPWIRVVNIARTMGELADFGYWRIGLSGHAELSLKEALTPGRNALVLGAEGPGMRHGVTEQCDQVAKLPIHEQMESLNVSNAAAIALYAATQG
>NZ_CP018154.1|WP_072559050.1|1237083_1237959_-|hypothetical-protein
MKRISTILFALAAPFLLTGCLLMPGNFNAEMIAYKNGQFSFTYKGEIQMVGMQLMLRQWSSIAEKEGEEEAEFTAICYDEEGDFDVRDCTEEETEEQREEWQKNIDAKKKKAEELKETLGALLAGVDPEDPESINEFARGLTRMEGWNKVEHKGDGVFEVDYSIKGMLDRDYAFAFIPGYSMGEPLFYANRWTEGRVKFAAPTFRNNLDLNSLFVASAAGFSAIAPLAGEKGPTGISYKAARGTFTIKTDGEILTNNTLEGPKQVNGMNVMSWEVRPGSDRAPEALIKLAP
>NZ_CP018154.1|WP_072559049.1|1236460_1237084_-|DNA-3-methyladenine-glycosylase-2-family-protein
MGISSEIIKSSLDELALHDKVLANLIQQFGYPEGRIRPTGYQSLLRTIVGQQVSVAAAASVWNKLENLLGENCPAENLITKDFEELRACGLSRQKQGYARSLAELILTGALDLDNLSPDDEQAISQLTSVKGIGRWSAEIYLLFAEGRPNIWPAGDLAIQEAVKRIKGLDERPNEKETRLHGDDWHPHRGAAATFCWHVYNKNFEAI
>NZ_CP018154.1|WP_083550537.1|1236006_1236285_-|hypothetical-protein
MGWLVIGWLLILLSPIVGALPGPGFIIMFPLGLGIVLRNSKWAKKQYLRFKKKFPDYGKWTDWALRRRGQKEMPPIPPIKKQIKDIFGKPKS
>NZ_CP018154.1|WP_072559047.1|1235748_1235883_-|50S-ribosomal-protein-L34
MKRTFQPSNLVRKRRHGFRSRMATPGGRKIIAARRSRGRKSLSA
>NZ_CP018154.1|WP_072559045.1|1235127_1235514_-|ribonuclease-P-protein-component
MIKKRPDFIKANRGMKYVTPAFILLVLYRGHHAPKRIGYTVTKKTGNAVARNRIKRRFRALCHEILPHHGMAHCDHIMIGRKEALTRDFTQMANEMRTALAYIARKSAKKTQKIYVKAADKIDESQNG
>NZ_CP018154.1|WP_072559044.1|1234921_1235131_-|membrane-protein-insertion-efficiency-factor-YidD
MKAFFIFFVRLWQWGPSRILPPTCRYAPSCSEYMIIAINRYGVIKGSWLGLKRLLRCNPWGGHGHDPVP
>NZ_CP018154.1|WP_072559043.1|1233081_1234866_-|membrane-protein-insertase-YidC
MEDRRNLILAIVFTGLILVGWQYAVSYFMPEAVQQNAPVAAKNSQAAPNTGGSAALPDIPTAQAAPKTNLSAEQVIATGQRVKISTPKLSGSINLRGAQVDDLLLLAHRTDLDKKSPPVRLFSPKGSKNAYYGSFSWVGTGNITLPNADTLWSANGAALTPKNPITLSWKNDKNQLFEIILSIDEDYLIKTEQRFSNFSSQPAEISPFGMLSRAELPKEKDSWNIHIGPMGVFDDVADYDWDYDDVAEAPNSRVGFESNGGWLGFTDKYWLGALIPDPKSSMQGRFQQVNGEYQTVMVRSVQSKVSPNNRVSHISYLYAGAKEVEVLDKYVDEIGVNKLDYSIDWGWFRAIEKVFFKVLHWFFGVFGNFGFAILGLTFLVRLLMFPVAQKQFASMAAMRAVQPKMKKLQERYKEDKPKMQQEIMKLYKDEKVNPLAGCLPIVLQIPIFFSLYKLLMLTIEMRHQPFMLWIKDLSAPDPLTPVNLFGLLPFDPPAMIAIGILPILLGISMWLMQKLNPQPMDDIQKQVFGLMPWFLMFIMAPFAAGLQLYWVMSNFISILQQKWLYSRHPQLKIQMAEEAEQKAKEKAEKAKAAK
>NZ_CP018154.1|WP_072559042.1|1232455_1233082_-|YihA-family-ribosome-biogenesis-GTP-binding-protein
MSDKNTLNKIFSGPVTFLKSAPDLKFLPDGNVMEIAFAGRSNVGKSSLINALVNRNGLARASNTPGRTQELNFFDVGSPILFRICDMPGYGFAKAPVATVQKWRHLVNDYLRGRQKLKRTFVLIDARHGFKDVDRDFMKMLDDAAISYRIVITKADKIKNSELVKISEEVQAELRKHSAAYPEISITSAEKKGGIDELRAFILETIET
>NZ_CP018154.1|WP_072559041.1|1231678_1232344_-|glutathione-S-transferase-family-protein
MKLIIGNKAYSSWSMRGWLAAKQSGLSFEEITVPLYNDDWESRKIESDLIPSSGKVPILWDDENVIWDSMAILEYLSDKVGRDRFWPKDDAARGMARSLCAEMHSGFMGLRRNCPMNVRKKFAGFQISEEARNDAIRILQLWAETRSRFGRSGPYLFGTFSAADIFYAPIVTRFVTYGFTLPGFAQSYVDTMMEHAWMVQWYEEASEEKWIIDHFEDVGQN
>NZ_CP018154.1|WP_156874151.1|1239431_1240412_+|hypothetical-protein
MKKKIISAIIMATSLVAAPAHAMNWCSLLKIIPQQESDFDRLVSSAEGVTGCEVRKNDGEGYASWLCADDPNTDDVNELLLFSYERIPGVGINMSIITEGAFNLDKFRQCGMKDLQDGVKFMPGNITYRDQLYMGHNGPSFTLISMGGTSLIFYTKSQADVAENLYSYSQGFFKIESENSPSTEVKLAGLSPIDNNVFDIVDAYKKRGARILTKNSEIPMLPEWTLSPPTDLEGVKEIKIDGVEQHLHKAEYIFETTSDYERHVALLDAAYGVSERYDADGCTKNNWVSGRIQMVGKHCKGDSGTLLFSNSVAFEQADQYLAGKNS
>NZ_CP018154.1|WP_072559053.1|1240576_1241830_+|pyridine-nucleotide-disulfide-oxidoreductase
MVARNYDIVIVGGGHAGAQAAISLRQNGFTGSIFIISNEKLLPYERPALSKDYLAGKKSADRLLIRPEAFWQERNIEFLLGVRVSKIDAAGHVITTSDQGEIAYGQLIWAAGASPRWLQCKGSELGNIFSVRTMGDVDQMQAELKSPRQIIIIGGGYIGLEAAASLSKMGHDITIIEAEERLLSRVAGAPLSQFYADIHRAQGIKILLKSQVSEIIGREGKISAVTLQDGTVLPAHIAIIGIGVVPNVGPLMEAGAAVGNGVDVDTYCRTSLNDIFAIGDCASHANPFAAGAVIRLESVQNCNDMANIVAKNICGEPSEYHAVPWFWSNQYDIRLQTIGLNLGYDDIIIRGSMEAQKFSLIYTQNGHVIALDCVNNAKDYVQGKALVEARAKIDADKLANIDMTLKDIFAAETLLAE
>NZ_CP018154.1|WP_072559054.1|1241839_1244767_+|hypothetical-protein
MSNIKAILGPTNTGKTHVAIERMCAHSSGVMGFPLRLLAREIYDRLVRIKGEAKVALLTGEERIEPPTARYYCCTAESMPIFSPHMAVQNHAAQNINGTVFRDFAFAAIDEAQLGADPERGHIFTDRLLNVRGREETMILGSHSLSPIIRDLIPKAEISSRPRFSTLSYGGPKKLSRLPKRSAIVAFSVEEVYRIAELLRRFRGGAAIVMGSLSPGARNAQVEMFQSGEVDYLVATDAIGMGLNLDFDHLAFASLIKFDGRKRRRLTISEMAQIAGRAGRHQKDGSFGPLSGECEIFRDEEIAAIEAHEFPLLDNLYWRRSELDYSTIETLIDDLETPPTHHRLRSAPPSLDIQILKNLANMPAIADQINNADMVKKLWQAASLPDFRGIGVEPHSRFVAGLWRYLGQGSGRISGEYFAKEIDRLDKADGDIEILTGRLQSVRSWNYIAQRPDWVDEPGGLRERAGAVEARLSENLHRQLRERFVNRRTSVLLRQKSQFSNILPVKVDKDGQILVDGESIGTLDGFQFIVDANAKHADRKIFEAAAQKSLGTILKERAFLVQASGDDNFTLNNIAAGQAILQWNDTPLGTLEKGKSLLQPEFRPHSAVAGLEADAMAAVVERAKAWIDAQITRNLAGVKALDELAENPEIDGAIRALAAQLADAGGVSGRAYLSDSINAIAKENRGAARKAGIVFGALDIFHHAALKPGAARWRSYLSAIYFGKPVADLPPESAVHLTEWNFASNDDCRNAGYRRVGNEYLRIDLAERIVKKAHEARGKGEISVMDMTFATSLGLSNDALTALMRDAGFKPAEAHEVTAEPVAEVNADSAKIDNGDIAASEVAIAEAPATEAPSAEAEVVAAEVVAAEVAPAEVVPVEIAPEAEAEPSAEADAAQNIEQKLPPTYWKWVGIRRKKFDRNNNAHKMAERGDRRNERQNKKPGHKNKHKGPRDDMPRFEPKPRQNAGHFDALLALKK
>NZ_CP018154.1|WP_072559055.1|1244858_1245197_+|ferredoxin-family-protein
MTYVVTDACIRCKYMDCVEVCPVDCFYEGENMLVINPSECIDCGVCEPECPAEAILPDTEDGLEKWLELNTVYSAEWPNITTSKEPPADADEFKNVEDKFDKYFSSEPGEGD
>NZ_CP018154.1|WP_072559056.1|1245329_1245920_-|HD-domain-containing-protein
MEQKDKKAKFTAMTEGTAEDWGIIAGQFMPFASKVADRVLDHLRLLDGDYGGFPIDRLQHCLQTATRAHRDGRDEQYVVMALLHDIGDTLGSYNHPEVAAAIIKPFVSEENHWICEHHGAFQGYYYFHYLGMDRNLRENFRGHKYFDACAEFCEKYDQAAFDPEYKSEALSFFEPMVRRVMAAPLASMYKQAVDAA
>NZ_CP018154.1|WP_072559057.1|1246058_1247243_+|sensor-histidine-kinase
MAVIELSTQPFFSNKNKAFWYLHSLGWAGAVILRSASALANGQPLGFLIPLILSAVTGYSITLLLSVIYRAVIEKRPLITWGVTTISVFIGAAIFAYIDVWVLQILRPIAEEKAFVQLLLGALYVDGILIGAWTALYYAINFFVRAEEQQDEMIRLEAQATSAQLTMLRYQLNPHFLFNTLNSISTLVLLKQTVQANAMLSRLSSFLRYTLINQAEAKVTLAQEIETLKLYLDIEKMRFEERLRPSFEIEPLCTQALLPSLLLQPLVENAIKYAVTPKEEGAEISIKAVKLGGRLRIIVSDSGPGMTDHHEMKISSTGLGMANIRERLLQAYGENQRFEYYSGAGGGFEVLVELPYEEKKIEMQQNNIFANNEVSLEDISSIGGMDIMGEGTKA
>NZ_CP018154.1|WP_072559058.1|1247239_1248043_+|response-regulator-transcription-factor
MTIKTILVDDETLAIQGLQLRLEAFEDVEIVATCRNGREAIRKIKTLKPDLVFLDIQMPGFDGFSVVQGIMDIDPPMIVFVTAYSEHAIRAFDAEAIDYLMKPVDEDRLRDTLERVRSKIADKKVGVEVERLREVINQVAPDAVNNIDIEVEDENLGQRYEKLINIKDRGQIFRVDVETIERIDAAGDYMCIYTADNSLILRETMKDLEKRFDPRVFQRVHRSTIVNLNLVREVKPHTNGECFLILESGAQVKVSRSYRDVVARFVH
>NZ_CP018154.1|WP_072560516.1|1248094_1248523_-|nucleoside-deaminase
MTAALALARQAMDENEVPVGAVVVKNQQIIGRGFNRPLATHDPTAHAEIAAIRDAAQFLGNDRLQDCDIWVTLEPCAMCAGAIAHARIKRLYFGAGDAKGGAVEHGPILFGQSTVHHKPEIYGGIMAEEATALLKLFFQSRR
>NZ_CP018154.1|WP_072559059.1|1248681_1248972_+|50S-ribosomal-protein-L28
MSRICELTGKGRLVGNNVSHANNKTKRTFLPNLQNVTLISDALEQSFKFRVSTSGLRSVEHVGGLDNWLMKTKAEKLSASAQKVKKELAKKLAAAA
>NZ_CP018154.1|WP_072559060.1|1248985_1250071_-|esterase-like-activity-of-phytase-family-protein
MKASGLKISSYNKYAQAFILILFFIILLAGLRITRINNSQSIWFEKLDLIDNGRANKADLSQIGPLKFISAWELKSYNADFGGISALVAIGQNRFLGTSDAGTLIGFGLSGDMQTDRPFIAPLPNSTGPGKSYKDRDSESMAYNPATGEYWVGTEFTQKITRYSPSFANSTGEVQPDLMKNWPSNSGPEAISRLIDGRFIIFSEGADGPEEGSYQAILFSGDPVERGAKASPFYHKPPKGFKITDATLLPNGDILCLYRSIGFPEGFAAKIGILKNQHIAPHKMSASKIIATLSPPLLVDNMEGITLTHENGRFYIWIISDNNFNIWQRTILMKFELPANLAHDGTHSKKPVDIVPGFQSM

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Crispr_ID: NZ_CP018154_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018154_6

1263055-1263122

Orphan

Consensus_repeat	Method
GGGCAATGATGCGCTGGTCAATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018154_6

>merge|NZ_CP018154|6|1263055-1263122|CRISPRCasFinder
GGGCAATGATGCGCTGGTCAATGGCTCGTCAGCAATTGAAGTGCCGGCCAATGACGCGCTGGTCAATG

>NZ_CP018154|6|6|1263055-1263122|CRISPRCasFinder
GGGCAATGATGCGCTGGTCAATG	GCTCGTCAGCAATTGAAGTGCC
GGCCAATGACGCGCTGGTCAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018154.1\|WP_156874244.1\|1250283_1250661_+\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|368440
NZ_CP018154.1\|WP_072559064.1\|1257450_1257663_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_156874245.1\|1269311_1270052_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_CP018154.1\|WP_156874246.1\|1274233_1275040_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|131294
NZ_CP018154.1\|WP_072559060.1\|1248985_1250071_-\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|379191
NZ_CP018154.1\|WP_072560525.1\|1275730_1276942_+\|methionine-gamma-lyase	unknown	unknown	gnl\|CDD\|181005
NZ_CP018154.1\|WP_072559071.1\|1270048_1270258_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072560527.1\|1276956_1277496_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP018154.1\|WP_072560518.1\|1254021_1257003_-\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|224447
NZ_CP018154.1\|WP_072559068.1\|1261517_1261715_+\|DUF465-domain-containing-protein	unknown	unknown	gnl\|CDD\|227768
NZ_CP018154.1\|WP_072559067.1\|1261040_1261205_-\|DUF465-domain-containing-protein	unknown	unknown	gnl\|CDD\|227857
NZ_CP018154.1\|WP_072559062.1\|1250969_1253939_+\|L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|237017
NZ_CP018154.1\|WP_072559065.1\|1257663_1258509_-\|DUF4115-domain-containing-protein	unknown	unknown	gnl\|CDD\|224343
NZ_CP018154.1\|WP_083550540.1\|1261888_1262356_+\|DUF1465-family-protein	unknown	unknown	gnl\|CDD\|369317
NZ_CP018154.1\|WP_072559076.1\|1277563_1280089_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP018154.1\|WP_072559073.1\|1272424_1274110_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|130898
NZ_CP018154.1\|WP_072559075.1\|1275117_1275576_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP018154.1\|WP_072559072.1\|1270437_1272243_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP018154.1\|WP_072559070.1\|1265138_1269302_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225463
NZ_CP018154.1\|WP_072559066.1\|1258649_1260911_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|226133

Protein	Function_ID	Function_description	E-value
NZ_CP018154.1\|WP_156874244.1\|1250283_1250661_+\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|368440	pfam05433, Rick_17kDa_Anti, Glycine zipper 2TM domain. This family includes a putative two transmembrane alpha-helical region that contains glycine zipper motifs. This family includes several Rickettsia genus specific 17 kDa surface antigen proteins.	2.47993e-07
NZ_CP018154.1\|WP_072560527.1\|1276956_1277496_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.37905e-11
NZ_CP018154.1\|WP_156874245.1\|1269311_1270052_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	2.12675e-13
NZ_CP018154.1\|WP_156874246.1\|1274233_1275040_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|131294	TIGR02240, Poly3-hydroxyalkanoate_depolymerase, poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. [Energy metabolism, Other].	1.29723e-69
NZ_CP018154.1\|WP_072559060.1\|1248985_1250071_-\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|379191	pfam13449, Phytase-like, Esterase-like activity of phytase. This is a repeated domain that carries several highly conserved Glu and Asp residues indicating the likelihood that the domain incorporates the enzymic activity of the PLC-like phospho-diesterase part of the proteins.	7.21773e-27
NZ_CP018154.1\|WP_072560525.1\|1275730_1276942_+\|methionine-gamma-lyase	gnl\|CDD\|181005	PRK07503, PRK07503, methionine gamma-lyase; Provisional.	0
NZ_CP018154.1\|WP_072560518.1\|1254021_1257003_-\|Rne/Rng-family-ribonuclease	gnl\|CDD\|224447	COG1530, CafA, Ribonucleases G and E [Translation, ribosomal structure and biogenesis].	1.23371e-139
NZ_CP018154.1\|WP_072559068.1\|1261517_1261715_+\|DUF465-domain-containing-protein	gnl\|CDD\|227768	COG5481, COG5481, Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown].	1.8851e-10
NZ_CP018154.1\|WP_072559067.1\|1261040_1261205_-\|DUF465-domain-containing-protein	gnl\|CDD\|227857	COG5570, COG5570, Uncharacterized small protein [Function unknown].	0.00134558
NZ_CP018154.1\|WP_072559062.1\|1250969_1253939_+\|L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	0
NZ_CP018154.1\|WP_072559065.1\|1257663_1258509_-\|DUF4115-domain-containing-protein	gnl\|CDD\|224343	COG1426, COG1426, Predicted transcriptional regulator contains Xre-like HTH domain [Function unknown].	7.1463e-17
NZ_CP018154.1\|WP_083550540.1\|1261888_1262356_+\|DUF1465-family-protein	gnl\|CDD\|369317	pfam07323, DUF1465, Protein of unknown function (DUF1465). This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.	2.14459e-31
NZ_CP018154.1\|WP_072559076.1\|1277563_1280089_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	7.19724e-42
NZ_CP018154.1\|WP_072559073.1\|1272424_1274110_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|130898	TIGR01839, Poly3-hydroxyalkanoate_polymerase_1, poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_CP018154.1\|WP_072559075.1\|1275117_1275576_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.03687e-45
NZ_CP018154.1\|WP_072559072.1\|1270437_1272243_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP018154.1\|WP_072559070.1\|1265138_1269302_+\|hypothetical-protein	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	3.33026e-48
NZ_CP018154.1\|WP_072559066.1\|1258649_1260911_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|226133	COG3605, PtsP, Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms].	0

>NZ_CP018154.1|WP_083550540.1|1261888_1262356_+|DUF1465-family-protein
MTAKLVDSLYTEAMLLADEARSYFDQYRHSDDVPAFLSVSFSCESLKVTTRLMHVIAWLLNQKAYFAGEFETEKSAFNFAEKEKKNAPPHFDLGHAAPSDEAVIVQFPQEAQSIITSSIDLYNRLSRLSDQLAGAIVAENRPAPHLMVEKLRSSF
>NZ_CP018154.1|WP_072559068.1|1261517_1261715_+|DUF465-domain-containing-protein
MNDDGLVKLLNIKKMEHRDLDDAINALQERVDSDQMQVARFKRKKLLLKDEIARLEDQLIPDIIA
>NZ_CP018154.1|WP_072559067.1|1261040_1261205_-|DUF465-domain-containing-protein
MNNSHMSALKTKHEDLQHKLDQEANRPFPDMGIINKIKKMKLKIKEEMRQHSLA
>NZ_CP018154.1|WP_072559066.1|1258649_1260911_-|phosphoenolpyruvate--protein-phosphotransferase
MNIVSQSSRTILTNLHDLMASKRGAQTKLNMIVDIIGETLQSEVCSIYLRREGMLELFATRGLNQEAVHVTRLALGEGLVGSIAKDVETLNLDEAATHPRFAYKPETGEEKFHSFAGVPIIRAERAVGVLSVQHAEPRKYEDVEIETLQTVAMVMSELIAGAGLIDGSDDAQMDQSTAVANGLPLVKGVALGKAIFHEPNIRIEHVLAEDVEVERQRVYTAFTKMRDQIEQLANQAEFGNAGEHVEIFAAYKMFAYDEGWSRRINKAIDSGLTAEAAIEHVQQRTRMRMRQIDDPLLAERMHDLEDLSNRLLRIVSGQMSTAAQLGLNEDSILVARNLGPAELLEYDRRRLRGVILEEGSLTAHVTIVARAMGIPVLGRIGSIRGQIRENDMLLLNVDQKNVIIRPSGAAIEAFQHELDLKKEQKAKFASMRNIEPISIDGTRINLMINAGLRDDVSSITTTGADGIGLFRTEFQFLVSATLPRREQQIRFYRDVLDVAGNKPVIFRTIDVGGDKALPYLQNRGQDEENPAMGWRAVRLALDHGGLMKAQAQSLLEASPGKLLQVMFPMIAEPWEFDEAKQVFDDQLALLKKRGKQPPSKIRYGVMLEVPALADMLDILLPKVDFISIGTNDLTQFLFAADRAHPRLAERYDWLSLAIMRFLNRVVKECIAHDVDVSICGEMGGRRLEALALLGIGVRKLSITPAAIGSIKSLVISTDIPKIEAKMQELLKSPCPNLRPELEKWAEEHGVDLD
>NZ_CP018154.1|WP_072559065.1|1257663_1258509_-|DUF4115-domain-containing-protein
MSEEAENNEIKLKTVGERLKDERQLQDFDLNKIAEKTRIPKRHILSLEASDFSALPGITYIVGFVKAYARALNLDEVQFASDIREELNEQNIVSRASQMEHYEQVDSATIPPKWLAWSAIGIAAVLLAAFLIWRTAQMDVINYPAEQASNEAPANAPKQKQAVATAPTAEGPVVFTAKGEIWLRIYEKEGERIFEKQMNAGESFTIPATAKEPLLLTGRPDLLTVTIGGKEVAPLGTAERTVSDLPISAKALLARPSEEESAAAVPATAAPTATPPATPAQ
>NZ_CP018154.1|WP_072559064.1|1257450_1257663_+|hypothetical-protein
MDLEQEIVINAHIIFLSTRHNLQNVAKYLSSLKAILFGAILYGWLVNVNDGPEIVRSSQLGGPVILMGRR
>NZ_CP018154.1|WP_072560518.1|1254021_1257003_-|Rne/Rng-family-ribonuclease
MKTRMLIDALHREETRVAVVTGNKIEEFDFESEEHKQLKGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLAFSEIHPDYYQIPKEDRERLLAEEAEAAAEEASMREQEEMEEAGEVSPSYEDEDEDELIEIESDERVDTIDINEGETGDSDDDGDDEDDASQDDEASHSENGSHQDEDDVNSEDGSDEDGVDGENRQNRSRRGRGRGRGGRRGNNNRENGQKGGRQNGRGNGRSAPKASDEMRAKRIAIRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTSHGGGISRKISNSSDRKRLKSIVSEMKLPSTMGCIIRTAGMSRTKVEIKRDFTYLARLWDEVREKTLKGAAPTLIHSDSDLIKRAIRDIYNRDIDEVLVEGEDSFKVARNFMKLLMPSHARKVQLYSDATPLFQVHGVEDQLNAMYQPVVQLKSGGYIVINPTEALVSIDINSGRSTKEHGIEATALSTNLEAAREIARQLRLRDMAGLVVIDFIDMEHHSNNRKVERAMKDALKNDRARIQVGRISSFGLMEMSRQRLRTGVLEASTRECPHCEGTGLVRTASSSALSALRMVEDEAAQGKGSIISLSASQEAAIYVLNNKRHELANIEDRFGVRISVTPNGEVEGAKMTVSSSGPPSTRRPIAKAPIVEEFDDEEEVEAENNQRSEGGHRHDDQDDRGNDQNGEPRKKRRRRGRRGGRDRNNDAQQDRNGHDDAGSNQAEQAQSGDNLAANNDEQSQKPRRSRRRKNANEDANNDGRNNQEHGNDAAGKEVQANDGSSDDENGAAKPKARRKPSAARAKKVKEEAVSTNEDTAESKPKTRRASTAKKKAETAAKEAATDAATNSASAISDNGEEAGDKPAAKKPARTRKKAEPKAKATKTADSNDVSEKAAKPKASAAAKKPATRKKAAPKTTGKAADKDAEKTVKPAKAAKAEKAEKPKKAAEKKVETEEADSAANTEEKGPRKGGWWQRTFG
>NZ_CP018154.1|WP_072559062.1|1250969_1253939_+|L-glutamate-gamma-semialdehyde-dehydrogenase
MTQISHAPEPDMILPLAHAIKMSDEDSQIVKEIAKTLLTSLRKAQHEGWVNQFLNEYRLGTEEGTALLSLAEAFLRVPDHDTADLLISDKIGNADWGTHSGKSASTLVNSATWGLVLGKAMVGPNEGSVLKTLIARTGEPFVRQGVGAAMRLMGQIFVMGRNIEEAVKRMNKSVNRGFTASFDMLGEAARTEDDATRYFNAYCDAIRKLAKFQSKGKALGHSISVKLSALHPRYEVAHRHKCVPELIEKCLQLAQLAADSNILLTIDAEEAARLDMSLDIIEAVASAPQLAHWDGLGMAIQAYSKRAMAVIGWADEMSGVYGRKLQVRLVKGAYWDSEIKYAQEQGLSGYPLFTRKAATDVSYLACAAAMLDAKNLFPAFATHNALTVASIIHLAGDRRDFEFQRLHGMGDGLFENLVREQGYQCRIYAPVGGHRDLLAYLVRRLLENGANSSFVHQLSDHNMTDDELLKDPVDRIIYIKGARHPSIPLPCDLYQPERLNSRGVHMDDAGTLDALMSRMNQPIDLIAPQQISTDTLSAMIANAQKAFVPWSRMSVDNRAAILEIWADLLEEQRETALQILVKEANKNIFDAINEVREAVDFCRYYAAQAREQMQDIILPGPTGEQNILRMDARGIWAAIAPWNFPLAIFMGQIAAALVTGNGVIAKPAPQTPIIGKFAVDLAYQAGVPKDVLQFANGGADLGKALVEDARINGVVFTGSVPTARHIARSLLIDDNRPLVPLIAETGGLNAMIVDSTALPEQVVRDVIISGFQSAGQRCSALRLLAVQDDIYDNLVEMLCGAMDSLNICMPDRADCDVGPVIDKASYDKLMGYLETQKNNIIKSANVPKNGLFVPPTLIAIDKVSDLQTEWFGPIIHIVKWRRGGMDALIAQINNSGFGLTMGVHSRIARVTQRVEAQARVGNLYVNRSIIGAVVGSQPFGGEGHSGTGPKAGGPHYLSRFCVERTISTDTTSAGGNASLLSLDDDDFEY
>NZ_CP018154.1|WP_156874244.1|1250283_1250661_+|glycine-zipper-2TM-domain-containing-protein
MIGVSNAEAKGANHYQSKPGYYQYSGYNDGYYEGRRDQRRVEQQRDRRQERYDDRRDSRNVYRSNNNAYRCDKGTGGTIIGAIAGGLVGNEVARRGNKTEGVIIGAAVGAMAGRAIDKSDSPCRR
>NZ_CP018154.1|WP_072559060.1|1248985_1250071_-|esterase-like-activity-of-phytase-family-protein
MKASGLKISSYNKYAQAFILILFFIILLAGLRITRINNSQSIWFEKLDLIDNGRANKADLSQIGPLKFISAWELKSYNADFGGISALVAIGQNRFLGTSDAGTLIGFGLSGDMQTDRPFIAPLPNSTGPGKSYKDRDSESMAYNPATGEYWVGTEFTQKITRYSPSFANSTGEVQPDLMKNWPSNSGPEAISRLIDGRFIIFSEGADGPEEGSYQAILFSGDPVERGAKASPFYHKPPKGFKITDATLLPNGDILCLYRSIGFPEGFAAKIGILKNQHIAPHKMSASKIIATLSPPLLVDNMEGITLTHENGRFYIWIISDNNFNIWQRTILMKFELPANLAHDGTHSKKPVDIVPGFQSM
>NZ_CP018154.1|WP_072559070.1|1265138_1269302_+|hypothetical-protein
MADNDKMTGQAQNIWTRIRSFAIAVFAIILLAILAIIIFLDLPAGHRFIISQIEKVETEDGMRFRVGDIDGSIYSKATLNEVAILDPKGRFLTVKQTQLKWYPVSWIFGTLSIDQLILKQGELIREPELKQKKNDDGPTLPDFDIFIGDFQANNFIFGQEFGGSRQTANIRASGDMLSGRLRGQFNLSTQNKTDMADINIDISPDENKFKIAAKINAKDNGVIQKLAQINWANEIIINGQGDWDKWRGQFLASQNSRSVAKLELKAKDGLFSADGAVSAIILPHGIARQISSPTLNIDLSGRYKDRMARMSGILSSDAVNMDIDGGYDLSIGGVDSFKINANIIKPSTLTKDLVSKNMNVKALLNGRLSQLRGEYIVTANAIGTGNLALNNARLTGDIRRMNDQTYLPMKFTAISLNGLGDELGALLKNINASGNLVLRGNKLTGDGLSISTNRIKAMADFSMNTDNGQFNVPATLSLPKYEIDGLGSADVLASLTFAPARPKGVNITGKASAILTRLDNGFANELTGGSIKLFTGVGIGPDGILKLPNLKIASQKLSFAGNGSRGKDGLFSIKGMAQHAEYGAAKAEIFGNLARPKVALFLDKPFDPLGLNKVTLTLNPVERGFDFATNGGSTLGPFDGTGAILLPKGGDAIIEFDRLAVSSTILTGYLRPASGGLDGKFKFNEGGVIGQITLAPQNGGQGVSGNFDIKQAFFRGPKNIRIRTASGKFDALFIAGNSNINANIQAQGVSAGDLILGRLAGNVKMRNGRGKAVVSVAGTRGSNFTWQSQISISPDKYIVKGNGSFRRQPLRLARAALITSKDDIWKIHDADLIYGNGKLNISGQLGGGKSAIDMDMQNLSLSLADLADNNVGLSGIASGKLRFVNQSGTPTGSASLKIKGLSRSGLSFIQEPLDMDVNAQLTANQLALRGLVSQKSDVSGRVQGRIILSNGGALLDRIYAGDAKLEARFNGPIAALWRLTGIELFDLGGNVSLATNIGGTINNPSIKGVFSTSKAVLNSPATGLRLTNLGAQGRFDGARLLVRNISGTTANGGKISGLGSFSFGGRMGVQIAMDLQAENAILINRDDFGATVTGPIKIRSQGAGGIIAGRVTVVKSDFNLGKANASQILPQLNVREINGRNDLPLPPAAAAPWKLAIEANIPNRMAVRGLGLDSEWSAKLKIGGNVDAPTLLGRAEMIRGNYEFSGRRFRLTEGNIYFDRNDPPNPRLDIVAQADLSDVDASILVSGRSANPQIQFTSTPQLPEEELLSRLLFGSSVPELSATEALQLGVALSGLRDGGTGFDPINAIRQSVGLDRLRLVSADGTTRGTSVAAGKYLGRRTYVEIVSDGKGYTATQIEFRVTRWLSILSSISSIGRQSLNVRVKRDY
>NZ_CP018154.1|WP_156874245.1|1269311_1270052_+|methyltransferase-domain-containing-protein
MKHSLSTFLFAALFCAPLLNGCSKNDEGRIETARDFPKAFRPVSPAGSTEFSTEAAREEAGEARTVMDWADIKAGMTVSDIGAGEGYYTVRLAERVGAKGRVVAQDISRDTLKRLGDRITRERWDNVSISEGAIDDPKLPANSFDRVLMVHMYHEVEEPYALLWRLYPALRKGGQVIVVDRDLPTDQHGIPPVLLFCEFEALGFRLMEFAETPDVGAYFARFERSKARPSPKDIKSCAIKNKNEVN
>NZ_CP018154.1|WP_072559071.1|1270048_1270258_-|hypothetical-protein
MALFENKIQAQSDEREISRILIKYGAEAKSILVNRSKDKDFSIRTRKHWKRLAKKLSKMPKQMSEMKVN
>NZ_CP018154.1|WP_072559072.1|1270437_1272243_-|elongation-factor-4
MTSLSHIRNFSIIAHIDHGKSTLADRLIQFTGGLTDREMTEQVLDNMDIERERGITIKAQTVRLNYTAKDGETYELSLMDTPGHVDFAYEVSRSLAACEGALLVVDAAQGVEAQTLANVYQSIEHDHEIVPVINKIDLPAAEPEKVRAEIEEIIGIDASEAVLSSAKSGIGIEDILEAIVTKIPPPSGDRDAPLKAMLVDSWYDPYLGVVILVRVIDGVLKKGMQVKFMAGGTQHLIDRTGCFRPKIEQVAEIGPGEIGFITAQIKEVAHAKVGDTITTVKGGAEKALAGFKEVQSVVFCGLFPVDAADFEKLRESIGKLRLNDASFSFEMETSAALGQGFRCGFLGLLHLEIIQERLSREYDLDLITTAPSVVYKMEMTDGSIKYLHNPADMPDPVKIRAIEEPWIKAVIYCPDEYLGGILKLCQDRRGVQTDLTYVGGRAQMTYELPLNEVVFDFYDRLKSISRGYASFDYEQIGTQVGQLVKMNILVNAEPVDALSMIVHRDAAEARGRHICERMKDLIPRHMFKIPVQASIGGKVIARETIAAMRKDVTAKCYGGDISRKKKLLEKQKKGKKKMREYGNVSIPQEAFIAALRMGDEK
>NZ_CP018154.1|WP_072559073.1|1272424_1274110_+|alpha/beta-fold-hydrolase
MAKKPSAFDTMNDATMALGPLSGLAREDFAGAVGLLLRQTMENPDKNFKAMSSFSEDVVQIMTGSSDLAPDRKDKRFMDPAWQFNPFFKAGAQYYLAIQKGVKGWIEDLEMDALERDRANFISQMVIDALAPTNSLIGNPTAQKRLVDSGGLSLIKGLRNAYDDMVNNKMMVSQVNKKPFKLGENIATAKGNVVYRDDIMELVQYAPTTDKVYAVPQLTIPPQINKMYINDLSPEKSVVKWQTDHGIQPFVISWKNPTEEQGVWNMTDYVNATIKALDVIQEITGSKTVNVSGACSGGQTMSVMLSKLAAMGDKRIGCVTMMVCVLEPKKGDTEASSLISDHGVELARQRAAKKGIVSGDSMARGFAWLRPNDLIWNYVINNYLLGDDPPAFDILFWNADATNLSGSLLSDFLDLFVANAYAEPATFEIADHVLDLTKVDCDMFILGGSTDHITPWQACYRSTQLFGGKNIEFVLSQAGHMQAILNPPGNPKAKYFKHSKNQTPANVEAWMKGTEEVAGSWWPYWMEWLTARAGKQIAAPKICGSKQYPAMESAPGLYVHG
>NZ_CP018154.1|WP_156874246.1|1274233_1275040_+|alpha/beta-fold-hydrolase
MEEADGRTLRVARWIATDKGAKALPLLFFNGIGANIESMAPLAEMLSDRDVITFDMPGVGGSPDPVVPYNAILMARIAAILLDRFGYDVVDVMGVSWGGAMAQQFALQNGARVNKLILAATSAGMLMVPGNPKALMKMADPRRYIDPEFMRKHFNTLYGGSSNGSEGHIGRITPPSKTGYFYQLFAMFGWTSAPFLPFMKAKTMVLMGADDQIVPLINGKFLNMLIPDSRLEVIEDGGHLFMLSHVEETISALRGFLDDEAQEQQVAA
>NZ_CP018154.1|WP_072559075.1|1275117_1275576_-|Lrp/AsnC-family-transcriptional-regulator
MDKIDYAIVRALQNNGRLTNQELAEKVNLSPSPCLRRVRNLENNGVIMGYGARINAKKFGLGITIFVHIKLEKHSHDLVSKFEQSIHEIDEVVECIVLSGQSDYLLRVMIKDLDAYDQFIRDKLQTIGGIHAIDSAFALSNIKQQNWYKPAS
>NZ_CP018154.1|WP_072560525.1|1275730_1276942_+|methionine-gamma-lyase
MGHHPAQQQAFSTRAIHSGYNPMDEQGALCPPLHLTSTFVAESADDMGAMFAGEKQGHFYTRISNPTLDLLERRIADLENAEAALGTASGMGAISATLWTLVAPGDEIIVDMTLYGCTFAFMRHGLGKFGVKVRHVDLTKTSLLQDAINDKTKVVYFETPANPNMRIVDIAAISEIAHQSGAYVVVDNTYATPYLTRPIDFGADIVVHSATKYLGGHGDLVAGIVAGSKELLTQIRLVGLKDMTGAVMSPFNAMLIMRGLKTLELRMDRHCQSAMKIAAWMESQSMVDVVHYPGLKSSPYHDLASRQMDGFGGMIAFELKGGINAGKAFIDALNLIHCAVSLGDAESLIQHPASMTHSPYTPEERAEYGISDGLVRLSIGLESVDDLMADLAQAFAALEHVTA
>NZ_CP018154.1|WP_072560527.1|1276956_1277496_-|GNAT-family-N-acetyltransferase
MKIRLANLDDVPAIKIIMDRAIAELQASFLTKEQLAASTAAMGLDMQLIHDGTYFCVVDDGQIVGCGGWSRRATLYGGSHSGKRDDKLLNPKYDRARIRAMYTHPEHVRRGIGGMIIAKAEQAARDEGFRAIEMAATMAGKPLYLSCGYHIESEWMDTQGAVPVPLATMVKNLSDNLPE
>NZ_CP018154.1|WP_072559076.1|1277563_1280089_-|TonB-dependent-receptor
MSAEELTAQADIGNLLRVAVPSFNVNTQPISDAATLVRPANLRGLSPDNTLVLVNGKRMHRASVIAFLGGGISDGSQGPDISTIPAAALKQVEVLRDGAASQYGSDAIAGVMNFILNDASEGGSISGKWGQTYAGDGDNYQISANIGLPVGDTGYLNLTAEYGESNATSRSVQRDDAAALIAAGNTAVANPAQIWGQPNVNDDLKLLVNFGADLDENHKIYAIGTYASRNVDGGFYFRNPTNRGGVYAGPLVDPVTGFASRANNAVNSILVGDLSTNNRGDCPAGIPLNGLVPNAAILASVKANPNCFSFVELFPGGFTPRFGGDLKDRSITAGLKGKIIGDLHYDLSYRFGRNDSDFFINNTVNASLGPSTPTSFNPGGYSQAENVFNADFSYGLGLGLASDLFISFGYEYRDEAFTIRPGNPESYALGILAQPTTAFPTGQGFSTSSNGFGGFSTNARGTFKENNQAFYLDLETDLTSALSVQGAVRYEDTKSFGNTTNYKIGALYKLTDSLRLRGTYSTGFHAPTAGQANVINVTTQFSNGMLQDEGTFPLNSAAGLIASNYIADSVANGGLGLARPTLGSEKSKSITAGLAGDFGPVSFTLDYFNIKLDGRISRSSTINFTDALRHLARTKGVTVTGTTTGQLLAQLGAANALNRADFTGFEDLSSFAFFNNDFDTRTQGIDLIINTDLNITETGRTKLTLAGNYTETKVTDQGATIAAVRVRQLEESLPKYKGFANLTHEQGRFRGLLRANYFGSYYEAHLDDDTLPIDAGARVTMDAEIGYEIMDGTEIAIGAQNFLDTYPEKNPYAGIAGAEYSVISPFGFNGGSYYIKARISF

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Crispr_ID: NZ_CP018154_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018154_7

1335504-1335600

Orphan

Consensus_repeat	Method
GTCATTCCCGCACCCCCTCATCGTCATTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018154_7

>merge|NZ_CP018154|7|1335504-1335600|CRISPRCasFinder
GTCATTCCCGCACCCCCTCATCGTCATTCCTTCTTCAATCTAATGCCATTCCCTCGCTTTCCTTCCCGTCATTCCCGCACCCCCTCATCGTCATTCC

>NZ_CP018154|7|7|1335504-1335600|CRISPRCasFinder
GTCATTCCCGCACCCCCTCATCGTCATTCC	TTCTTCAATCTAATGCCATTCCCTCGCTTTCCTTCCC
GTCATTCCCGCACCCCCTCATCGTCATTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018154.1\|WP_072560554.1\|1330133_1330730_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|234616
NZ_CP018154.1\|WP_072559121.1\|1340445_1341024_+\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|172630
NZ_CP018154.1\|WP_072559112.1\|1328420_1329164_-\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
NZ_CP018154.1\|WP_072559114.1\|1330835_1331360_+\|peptide-deformylase	unknown	unknown	gnl\|CDD\|234668
NZ_CP018154.1\|WP_072560565.1\|1341056_1341479_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	unknown	unknown	gnl\|CDD\|349954
NZ_CP018154.1\|WP_072559120.1\|1337849_1338488_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP018154.1\|WP_072560563.1\|1339303_1340347_+\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP018154.1\|WP_072560552.1\|1326508_1328401_+\|amidotransferase-1,-exosortase-A-system-associated	unknown	unknown	gnl\|CDD\|132152
NZ_CP018154.1\|WP_072559113.1\|1329160_1330081_-\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP018154.1\|WP_072560559.1\|1335681_1336605_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
NZ_CP018154.1\|WP_083550106.1\|1341385_1342678_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP018154.1\|WP_072559116.1\|1333559_1333922_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NZ_CP018154.1\|WP_072559118.1\|1334992_1335301_+\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NZ_CP018154.1\|WP_083550103.1\|1331439_1332690_-\|penicillin-binding-protein-activator	unknown	unknown	gnl\|CDD\|380562
NZ_CP018154.1\|WP_072559115.1\|1332688_1333558_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|381175
NZ_CP018154.1\|WP_072560561.1\|1338503_1339220_-\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NZ_CP018154.1\|WP_072559119.1\|1336629_1337808_-\|coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|181629
NZ_CP018154.1\|WP_072559117.1\|1333940_1334894_+\|glutathione-synthase	unknown	unknown	gnl\|CDD\|235371
NZ_CP018154.1\|WP_072559123.1\|1344275_1344767_+\|disulfide-bond-formation-protein-B	unknown	unknown	gnl\|CDD\|376848
NZ_CP018154.1\|WP_072560567.1\|1342839_1344195_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864

Protein	Function_ID	Function_description	E-value
NZ_CP018154.1\|WP_072560554.1\|1330133_1330730_+\|recombination-protein-RecR	gnl\|CDD\|234616	PRK00076, recR, recombination protein RecR; Reviewed.	1.59277e-97
NZ_CP018154.1\|WP_072559121.1\|1340445_1341024_+\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|172630	PRK14141, PRK14141, heat shock protein GrpE; Provisional.	1.57926e-51
NZ_CP018154.1\|WP_072559112.1\|1328420_1329164_-\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	1.30796e-119
NZ_CP018154.1\|WP_072559114.1\|1330835_1331360_+\|peptide-deformylase	gnl\|CDD\|234668	PRK00150, def, peptide deformylase; Reviewed.	3.47089e-85
NZ_CP018154.1\|WP_072560565.1\|1341056_1341479_+\|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH	gnl\|CDD\|349954	cd18081, RlmH-like, 23S-rRNA-pseudouridine1915-N3-methyltransferase RlmH. 23S rRNA (pseudouridine1915-N3)-methyltransferase RlmH catalyzes the addition of a methyl group at the N-3 position of pseudouridine Psi1915 in 23S rRNA to form m(3)Psi1915. This family of proteins belongs to the SPOUT methyltransferases. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	1.34998e-54
NZ_CP018154.1\|WP_072559120.1\|1337849_1338488_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	7.97372e-101
NZ_CP018154.1\|WP_072560563.1\|1339303_1340347_+\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	1.00544e-138
NZ_CP018154.1\|WP_072560552.1\|1326508_1328401_+\|amidotransferase-1,-exosortase-A-system-associated	gnl\|CDD\|132152	TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.	0
NZ_CP018154.1\|WP_072559113.1\|1329160_1330081_-\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	6.95616e-136
NZ_CP018154.1\|WP_072560559.1\|1335681_1336605_-\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	6.27803e-115
NZ_CP018154.1\|WP_083550106.1\|1341385_1342678_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	6.71955e-24
NZ_CP018154.1\|WP_072559116.1\|1333559_1333922_+\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	4.07085e-25
NZ_CP018154.1\|WP_072559118.1\|1334992_1335301_+\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	3.74412e-48
NZ_CP018154.1\|WP_083550103.1\|1331439_1332690_-\|penicillin-binding-protein-activator	gnl\|CDD\|380562	cd06339, PBP1_YraM_LppC_lipoprotein-like, periplasmic binding component of lipoprotein LppC, an immunodominant antigen. This subgroup includes periplasmic binding component of lipoprotein LppC, an immunodominant antigen, whose molecular function is not characterized. Members of this subgroup are predicted to be involved in transport of lipid compounds, and they are sequence similar to the family of ABC-type hydrophobic amino acid transporters (HAAT).	2.18842e-72
NZ_CP018154.1\|WP_072559115.1\|1332688_1333558_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|381175	cd11648, RsmI, Ribosomal RNA small subunit methyltransferase I (RsmI), also known as rRNA (cytidine-2'-O-)-methyltransferase. RsmI is an S-AdoMet (S-adenosyl-L-methionine or SAM)-dependent methyltransferase responsible for the 2'-O-methylation of cytidine 1402 (C1402) at the P site of bacterial 16S rRNA. Another S-AdoMet-dependent methyltransferase, RsmH (not included in this family), is responsible for N4-methylation at C1402. These methylation reactions may occur at a late step during 30S assembly in the cell. The dimethyl modification is believed to be conserved in bacteria, may play a role in fine-tuning the shape and functions of the P-site to increase the translation fidelity, and has been shown for Staphylococcus aureus, to contribute to virulence in host animals by conferring resistance to oxidative stress.	2.22829e-109
NZ_CP018154.1\|WP_072560561.1\|1338503_1339220_-\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	1.72641e-165
NZ_CP018154.1\|WP_072559119.1\|1336629_1337808_-\|coproporphyrinogen-III-oxidase	gnl\|CDD\|181629	PRK09057, PRK09057, coproporphyrinogen III oxidase; Provisional.	0
NZ_CP018154.1\|WP_072559117.1\|1333940_1334894_+\|glutathione-synthase	gnl\|CDD\|235371	PRK05246, PRK05246, glutathione synthetase; Provisional.	0
NZ_CP018154.1\|WP_072559123.1\|1344275_1344767_+\|disulfide-bond-formation-protein-B	gnl\|CDD\|376848	pfam02600, DsbB, Disulfide bond formation protein DsbB. This family consists of disulfide bond formation protein DsbB from bacteria. The DsbB protein oxidizes the periplasmic protein DsbA which in turn oxidizes cysteines in other periplasmic proteins in order to make disulfide bonds. DsbB acts as a redox potential transducer across the cytoplasmic membrane and is an integral membrane protein. DsbB posses six cysteines four of which are necessary for it proper function in vivo.	1.00448e-27
NZ_CP018154.1\|WP_072560567.1\|1342839_1344195_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.012e-122

>NZ_CP018154.1|WP_072559118.1|1334992_1335301_+|GIY-YIG-nuclease-family-protein
MRSIKQPAVYIIASKRNGTLYAGVTSNLMQRIHQHRGGDFSGFSQQYDVKKLVWYELHDEMEQAILREKRIKKWNRAWKLELIEKENPNWQDLAEQLGFEKL
>NZ_CP018154.1|WP_072559117.1|1333940_1334894_+|glutathione-synthase
MSKLRIAVQMDPMESINIKGDSSFALMLSAQERGFDIYHYDVRDLTWEGNEITAMAHPVFDLKQEQGNHFRFGDALRLDLRDDVDVVLMRQDPPFDIGYLTGTWLLERLAGDTLVINDPKSVRDAPEKMFVLDFAQFMPPTMITRSLEETKKFQSKHGAIVIKPLHGNGGKAVFRIGEDGANLGALVELFGQVWPEPYMVQKFLPDVSMGDKRIILIDGEVAGAINRKPGEGEFRSNLAVGGYAEASELSEKEQEICAAMGAELKKRGLLFVGIDVIGGKWLTEINVTSPTGIVAISNFNGTDLPAMIWDAVEKKLG
>NZ_CP018154.1|WP_072559116.1|1333559_1333922_+|YraN-family-protein
MARKLSRIEAENKGRRAEKIAAWWLRLHGWQILTMRAKTPKGEVDIIARRGKSVIFVEVKARDNEQALGTAIGEYQLKRVAAAAQFLIPKYAKNAENIQIDVIWVAPWRLPHHIKNIWHY
>NZ_CP018154.1|WP_072559115.1|1332688_1333558_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MIDPFESKILSAGLYIVATPIGNLSDISERAIYILRHADLVAVEDSRVSGKLLHHLGLKKKMRPYHDHSDDRVRQDILNIARNHVVALISDAGTPLISDPGYKLVRDARAANIMVTTAPGPNSAIAALTISGLPTDRFYFYGFLPNKKKARCDALSDIKNINATLIFFENGARLAASIADIYDQLGNREIVIAREISKKFEEVISGSYSEIQERLANNPPKGEIVLMVGPPDEQGPEQGDIRAALAEALDRLPAGKAAAEISKRFGVERKDMFDLSAEIRAAKIKSEAS
>NZ_CP018154.1|WP_083550103.1|1331439_1332690_-|penicillin-binding-protein-activator
MMNSNAAKPLLPQVENENRSFFRAALDMISNKYMNIIRKLSALMLISALAACQSVIPKGGQNPETTAPVAKRTTIVSNDAERHRVALLLPITGPDGDVGQAIANATALALQDTNDKSLRMTTYDTAGGAKQAAERAIADGNRLIIGPLRGDNVVEVASISKPANVPIITFSNDIGVASHDIFLLGHLPTQSVDRILRFAQNRGAKRFATIAPANLYGQRSTSAFLRTVRDIGAVAVTSQSYNEGTNELDAAVKKIASSGQIDAILIAANGAEAVKIADALRANGVKNAKFLGTDLWNISTRMASTKSLYGAWFATVSDGVFNDYAAGYKARYGTTPLRLTSLGYDSVLLTVRIAQDWPIYSEFPVDRLIEQGGFIGVDGAFRFMPDGLSERALEVQEVQNGQYVTIEAAPSTFNQR
>NZ_CP018154.1|WP_072559114.1|1330835_1331360_+|peptide-deformylase
MAILPILEVPDARLKTVSTPVEKFDDSLANLVQDMFDSMYEANGIGLAAIQIGVPLRVLVIDLQEGEDEDGKALRQPQIFINPEILNPSEDLSAYKEGCLSVPDQFAEVERPAKIRARWQDLTGKQYDKELDGLMATCLQHEMDHLEGILFIDHLSRLKRQMVLKKLQKARRAA
>NZ_CP018154.1|WP_072560554.1|1330133_1330730_+|recombination-protein-RecR
MASQEIDALTMALSKLPGLGPRSARRVVLHLVKRREVELPNLIKRLEVVEQHLTACDICANVDTKNPCGVCSDPRRDDRSLCVVEEVADMWALDRSRLFAGKFHVLGGRLSAMDGVRPEDLSIDKLLARVANGGIDEIVLAMNATLEGQTTAHYLIERLEEYPVRLTQLAHGLPVGGELDYLDEGTLAQALRARRPVE
>NZ_CP018154.1|WP_072559113.1|1329160_1330081_-|methionyl-tRNA-formyltransferase
MRIAFMGTPDFAIPALNKLVADGHEIVAVYSQPPRPANRGKKLQKTPVHVRADELGLDVRHPLNFKDAADIADFSALNLDMAVVAAYGLILPQSLLDAPKYGCINIHGSLLPRWRGAAPVQRAILAGDEKSGAAIMQMEAGLDTGPVFLTKEMNLRHNDGSWKNAGHITDEIAHLGAEALSDFIDNIDNLTAIAQAEDGVTYAHKIKKEEALLDFSKPAEILAREIAAFDPAPASYFILGDDRIRLFNAHIINASGQAGEILDADMTIACGELAIRADFVQRAGRPKLSRKDFLNGTKLPKGTILS
>NZ_CP018154.1|WP_072559112.1|1328420_1329164_-|tRNA-pseudouridine(38-40)-synthase-TruA
MTRFALTIEFDGRPYMGWQHQNHGPSVQQAIEEAIEAVTQEKVRIQAAGRTDSGVHALAMRAHADIEKPLSAFRLGEAINAKLKGHPIAIISCEQVADDWHARFSCIGRAYIYHIVNRRAPLTLQSGRAWQIAHPLDSDAMHDAAQILLGLHDFTTFRSTICQSKSPIKTLDQLDVVRSGDDIKIYAGARSFLHHQVRSMVGCLAAVGSGRWTKDDLQSALEAKDRQRLAINAPPDGLYFVKAIYPE
>NZ_CP018154.1|WP_072560552.1|1326508_1328401_+|amidotransferase-1,-exosortase-A-system-associated
MCAITGIFHLQTAKPVDPSRVRRMADSMIHRGPDGSGIWTAPGIGLGHRRLSIIDVEGSPQPMVAHDEKWAICFNGEIYNYQEIRAELIKLGHVFTTSGDTEVILHAWRQWGTDCLSKLNGMFAFAIYDAAQNQMHLVRDRFGVKPLYYAEISDGSVIFGSELKALLAHPALRRKLDHHAVDSYMAFGYVPDHQCILQGVQKLPAGHFLTLSCGQPMPSPQKWWDIDFSNREKGSAAELGEELYRLMKQGVASRMVADVPIGAFLSGGVDSSAVVAMMASLTNRPVTSCSIGFDEKSLDESNYADIIAKRFATDHHRQIVDSNQYDLIDILADHFDEPFADASALPTYQVSALAVKSVKVALSGDGADEALAGYRRQVFFHHEEKVRSILPQNFRSNIFGPLAKYYPKADWAPRFLRAKSSFAGLAISGEEAYTNAVGVTGYDARHLLYSAQMSATLSGYRAETFMHDLMVNAPAQSGLDRAQYADLKMWMPGDILTKVDRMSMAVSLEAREPLLDHRIVEFAARLPENMRVRGKEGKWLMKNVMRRDLPEDILYRPKMGFVTPISQWFKGPLADEARALCHSKIFADFNLFDSAQISKMVEQHISGMVDHGRTIWQLVMLEKSLVRLFG
>NZ_CP018154.1|WP_072560559.1|1335681_1336605_-|tyrosine-recombinase-XerC
MNDAPPNNNQQWAQRIIADYQQFLALDRRRSVHTVRAYIITAQRFLSFVKFHFGDLQNITMLRELKSTDLRAYLASRRADGLANRSAARELSAVRSFLKFALGDDYILPILKSPKSPKTVPRPAAPDDIIALATHIRDGAKSPWMGKRDWALLMILYGAGLRISEALGIYMDQIPLGKNLRILGKGGKTRLVPIIPAVRDAVGDYIAHCPYKLHNKDPIFRGNNGGPLSPASIRKVVQHARRSLNLSDSLTPHALRHSFASHLLAGGADLRSLQELLGHASLSSTQIYTDVDTAMLLDVYKHAHPRG
>NZ_CP018154.1|WP_072559119.1|1336629_1337808_-|coproporphyrinogen-III-oxidase
MTNKAPIALYIHWPFCVSKCPYCDFNSHVRAQVDMAAWQAALLSDMAFEAELNGNRPLSSIFFGGGTPSLMPPEIVATLIEQADKYWQFTNDIEITLEANPNSVEVDNFAALAGAGVNRVSLGIQSLRTDTLKFLGRAHNVNEAKRAIDTAQRHFARVSIDLIYALPDQKSDDWAIELKEALAFGTDHMSLYQLTIEPGTRFASDFRRGILTPTPDDNAAVLYHQTLDQMAAANMPVYEISNFAKAGQESRHNLTYWTYGDYIGIGPGAHGRRPNIIQNKSVHMATQRHKKPENFTSAIARNGHGMEQENIIPPTDQGIEALLMGLRLYRGMDIGALSARLNRSVDQLVNRHEINKLTAQGFASFTDNHLTITAKGMPMLDHILGNIVEIDE
>NZ_CP018154.1|WP_072559120.1|1337849_1338488_-|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MNKKLSAGKLVIASHNQGKVREIRALLAPYGIEPISAAELNLPEPEETGTTFAENALIKAHSAAKGANMVALADDSGLCVTSLGGAPGVYTADWAEEEFFHAGKRTTDGSRNWYLAMGKVEGRLAQLGMDVDRSAFFTCTLALAWPDGSERVFEGRVNGSLTWPPRGDKGFGYDPVFVANGMDKTFGEIDPDAKHAISHRADAFAKFIADMF
>NZ_CP018154.1|WP_072560561.1|1338503_1339220_-|ribonuclease-PH
MRPSGRSADEMRAISIETNYIKHAEGSVLISFGDTKVICTASVEDRLPPWMRGKGEGWVTGEYSMLPRATHTRGQREAAKGKQSGRTQEIQRLIGRSLRSVVDMKKLGEHQITLDCDVIQADGGTRTASISGAWVAMRLAVDGLLAKGAIKEDPIKGHIAAISCGIYNGTPVLDLDYIEDSSADADANFILLEGGQIAEVQATAEGATYDEEALLRLMRLARIGCDQIITAQKSALSK
>NZ_CP018154.1|WP_072560563.1|1339303_1340347_+|heat-inducible-transcriptional-repressor-HrcA
MTMPPIYELNDRTRTLFRVIVEQYLDSGLPVGSRTLSKISGLSLSSASIRNVMQDLEEMGLLAAPHTSAGRLPTESGLRLFVDGMMRTDEPTMEEQRAIKSQITGHGPIEEALASASQILSGLSSCAGIVMAPKREAILKQFSFARLSQNQILAIMVASDGHIENRIIELNAPVNDSALVEASNYMTVKFCGMTLNDAKAALDAEIRNEQAALDRASANLVKQGLAIWSIDADERPVLIVKGQSNLLDEAAVNDLDRIRNLLDDLENKQEIAQLVDSARSAQSMRIFIGSENRLFSLSGSSIIAAPYHDEGGKVVGVVGVIGPTRLNYGRIIPMVDFTAKTLSTLIK
>NZ_CP018154.1|WP_072559121.1|1340445_1341024_+|nucleotide-exchange-factor-GrpE
MNEDKNKPAGDEQDNPFANAEIETDEILTEEEPQDSEAELLAQLHEQVAALKQEVLYAQADTQNVRRRLEKEVQDARTYAATSFARDILSVSDNLTRALDAIPVELREDEKFKGLVTGLDATGRELTNIFGKHGIVRVAAMGMPLDPNVHQAMVEIPSEEPEGTIVAEMQAGYQIKDRLLRPAMVGVAKKPE
>NZ_CP018154.1|WP_072560565.1|1341056_1341479_+|23S-rRNA-(pseudouridine(1915)-N(3))-methyltransferase-RlmH
MTLQIIAHGKIGRSSEGDLVDRYIKRISWPTQITELSDNAKELPPISGRTKTILLDERGKTLSSLELSQIVGDWRDDGVQHCRFIIGPADGFSKAQRDEADLLLSFGRLTWPHMLARAMLAEQLFRITSILANHPYHRQG
>NZ_CP018154.1|WP_083550106.1|1341385_1342678_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MAAYVGAGNVGRTIISHHIHSCKSSLSSARIGGMAFYPNSTVKKIVKSSVILAVVLMCNPVAAAINAVSVDSERSALIEAKKKAEAARKRAEKLQEQADNSQYEADKLAAKRAAAQAEVEASRAEVDAAKARLAILNSQLQHAQAALNEANNPNLRLNAALLQLAKQPRTMLFTRTSSIKNYARTRAILSAIEPQILRRTAKLRAAIATKRKLLNNRQAALNLLSASRKALAEEEAKLAILASGAQKKAGQFRADAALELDQAILEGERARDIVDRIDNIEKSDIVAAELAKLSGPTLRKEGRQRPAIMPDIYQMPVKGQIFFGFGEISINGYRERGLGLMVDAGSKIKAPAGGKISYAGNYRGYGNIVIIDHGAGWSTLVTGMASLNIRKADVVTKGENIGVSPNETAMIRVELRRNGRNMDVAAMIAQ
>NZ_CP018154.1|WP_072560567.1|1342839_1344195_+|S41-family-peptidase
MKKNLSLKIIGAIGLISLGAMIPGALTAQSNSDLSEMEEFFAVYQQVKRNYVDKVDDKQLMEGAIQGMLSSLDPHSSFLSKSDFQSLQTQIDGEYGGLGLSVTIEQGAVKVIAPTADTPADKAGIKPGDYITHLDGKLIYGGTLDEAVEQMRGTPGTSIKLTIVREGRDAPFDVDITRAVIDLKPVKWEVKDQIGIISINSFSEETGKDVASAIKDIERDLGKKPLGYIVDLRSNPGGILDEAVAVSDVFLDKGEIVSERGRERSSIKRWYAETEIKGDLAKGLPVIVLVDAGSASASEIVAGALQDHHRAIVMGERSFGKGSVQNVLPLSQDTGLRLTIARYHLPSGRSVQEGGIKPDVRVPQLSDPDYKNRTVMRESDLLRHLVNDLKVDDSKLEDDNIDDPRFTKTAEQLKAEGVEDFQMAYALDTLRRLGPNSMRLAKNKDNKPKQP
>NZ_CP018154.1|WP_072559123.1|1344275_1344767_+|disulfide-bond-formation-protein-B
MNNIKKSILISFLTSFALLAGAYIGQYGFHLYPCEMCWWQRYPHFAAIIFAVIGYMMLHRKNPGLAKFLALIAAISVMISGLIGGFHAGVEYGWWQGLTACSVPIGNGANFLEALENAPIVRCDVAPWDLFGISLAGYNFLISLGAAILSLKILFRSQSVIKG

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Crispr_ID: NZ_CP018154_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018154_8

1697216-1697386

Orphan

Consensus_repeat	Method
TTCAGTTGTAGGCAGTCCCATTTTTAGGACTGTCTATGACTGA	PILER-CR
GTTGTAGGCAGTCCCATTTTTAGGACTGTCTATGAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP018154_8

>merge|NZ_CP018154|8|1697216-1697386|PILER-CR,CRISPRCasFinder
TCGGTTGTAGGCAGTCCCATTTTTAGGACTGTCTATGACTGAGGAAGGCGGCCTTAAAGACCTGATTGAGTTGTAGGCAGTCCCATTTTTAGGACTGTCTATGACTGATTATTACACAACATCAAAGCCAGTTCCGTTGTAGGCAGTCCCATTTTTAGGACTGTCTATGAC

>NZ_CP018154|8|1|1697216-1697386|PILER-CR
TCGGTTGTAGGCAGTCCCATTTTTAGGACTGTCTATGACTGAG	GAAGGCGGCCTTAAAGACCTGAT
TGAGTTGTAGGCAGTCCCATTTTTAGGACTGTCTATGACTGAT	TATTACACAACATCAAAGCCAGT
TCCGTTGTAGGCAGTCCCATTTTTAGGACTGTCTATGAC

>NZ_CP018154|8|8|1697219-1697386|CRISPRCasFinder
GTTGTAGGCAGTCCCATTTTTAGGACTGTCTATGAC	TGAGGAAGGCGGCCTTAAAGACCTGATTGA
GTTGTAGGCAGTCCCATTTTTAGGACTGTCTATGAC	TGATTATTACACAACATCAAAGCCAGTTCC
GTTGTAGGCAGTCCCATTTTTAGGACTGTCTATGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018154.1\|WP_072559392.1\|1686338_1689728_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP018154.1\|WP_072559389.1\|1684880_1685111_+\|DUF4170-domain-containing-protein	unknown	unknown	gnl\|CDD\|372720
NZ_CP018154.1\|WP_072560693.1\|1705497_1705800_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072559404.1\|1704137_1705373_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP018154.1\|WP_072560692.1\|1699413_1700259_+\|DUF817-domain-containing-protein	unknown	unknown	gnl\|CDD\|377545
NZ_CP018154.1\|WP_072559388.1\|1684320_1684818_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072559393.1\|1689730_1690915_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP018154.1\|WP_072559394.1\|1691114_1691567_+\|aspartyl-tRNA-amidotransferase	unknown	unknown	gnl\|CDD\|370480
NZ_CP018154.1\|WP_072559402.1\|1701807_1702989_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226346
NZ_CP018154.1\|WP_072559395.1\|1691593_1693480_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP018154.1\|WP_072559391.1\|1685769_1686246_-\|transcription-elongation-factor-GreA	unknown	unknown	gnl\|CDD\|234693
NZ_CP018154.1\|WP_072559396.1\|1693517_1695545_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP018154.1\|WP_072559397.1\|1695632_1697105_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072560694.1\|1708004_1708292_+\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|377166
NZ_CP018154.1\|WP_072559403.1\|1703000_1704083_-\|anhydro-N-acetylmuramic-acid-kinase	unknown	unknown	gnl\|CDD\|236579
NZ_CP018154.1\|WP_072559400.1\|1698541_1699384_+\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP018154.1\|WP_072559390.1\|1685121_1685730_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP018154.1\|WP_072559405.1\|1705818_1707888_-\|ATP-dependent-DNA-helicase-RecG	unknown	unknown	gnl\|CDD\|236794
NZ_CP018154.1\|WP_072559399.1\|1697734_1698445_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018154.1\|WP_072559401.1\|1700246_1701647_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910

Protein	Function_ID	Function_description	E-value
NZ_CP018154.1\|WP_072559392.1\|1686338_1689728_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP018154.1\|WP_072559389.1\|1684880_1685111_+\|DUF4170-domain-containing-protein	gnl\|CDD\|372720	pfam13773, DUF4170, Domain of unknown function (DUF4170).	1.24766e-37
NZ_CP018154.1\|WP_072560692.1\|1699413_1700259_+\|DUF817-domain-containing-protein	gnl\|CDD\|377545	pfam05675, DUF817, Protein of unknown function (DUF817). This family consists of several bacterial proteins of unknown function.	2.66441e-119
NZ_CP018154.1\|WP_072559393.1\|1689730_1690915_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP018154.1\|WP_072559395.1\|1691593_1693480_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP018154.1\|WP_072559400.1\|1698541_1699384_+\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	1.4078e-42
NZ_CP018154.1\|WP_072559391.1\|1685769_1686246_-\|transcription-elongation-factor-GreA	gnl\|CDD\|234693	PRK00226, greA, transcription elongation factor GreA; Reviewed.	1.94398e-70
NZ_CP018154.1\|WP_072559396.1\|1693517_1695545_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP018154.1\|WP_072560694.1\|1708004_1708292_+\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|377166	pfam03937, Sdh5, Flavinator of succinate dehydrogenase. This family includes the highly conserved mitochondrial and bacterial proteins Sdh5/SDHAF2/SdhE. Both yeast and human Sdh5/SDHAF2 interact with the catalytic subunit of the succinate dehydrogenase (SDH) complex, a component of both the electron transport chain and the tricarboxylic acid cycle. Sdh5 is required for SDH-dependent respiration and for Sdh1 flavination (incorporation of the flavin adenine dinucleotide cofactor). Mutational inactivation of Sdh5 confers tumor susceptibility in humans. Bacterial homologs of Sdh5, termed SdhE, are functionally conserved being required for the flavinylation of SdhA and succinate dehydrogenase activity. Like Sdh5, SdhE interacts with SdhA. Furthermore, SdhE was characterized as a FAD co-factor chaperone that directly binds FAD to facilitate the flavinylation of SdhA. Phylogenetic analysis demonstrates that SdhE/Sdh5 proteins evolved only once in an ancestral alpha-proteobacteria prior to the evolution of the mitochondria and now remain in subsequent descendants including eukaryotic mitochondria and the alpha, beta and gamma proteobacteria. This family was previously annotated in Pfam as being a divergent TPR repeat but structural evidence has indicated this is not true. The E. coli protein, YgfY also acts as the antitoxin to the membrane-bound toxin family Cpta, pfam13166, whose E. coli member YgfX, expressed from the same operon as YgfY.	6.64866e-20
NZ_CP018154.1\|WP_072559394.1\|1691114_1691567_+\|aspartyl-tRNA-amidotransferase	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	6.21567e-44
NZ_CP018154.1\|WP_072559403.1\|1703000_1704083_-\|anhydro-N-acetylmuramic-acid-kinase	gnl\|CDD\|236579	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.	7.57603e-138
NZ_CP018154.1\|WP_072559402.1\|1701807_1702989_+\|VWA-domain-containing-protein	gnl\|CDD\|226346	COG3825, COG3825, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP018154.1\|WP_072559390.1\|1685121_1685730_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	6.82449e-18
NZ_CP018154.1\|WP_072559405.1\|1705818_1707888_-\|ATP-dependent-DNA-helicase-RecG	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	0
NZ_CP018154.1\|WP_072559404.1\|1704137_1705373_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP018154.1\|WP_072559401.1\|1700246_1701647_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.67199e-23

>NZ_CP018154.1|WP_072559397.1|1695632_1697105_+|hypothetical-protein
MGDQNLFGDLVKRPKFRSDILYFVQLAGNYAANIFVDMRNRASSKQKKAFYDWLSGVKNDDIDVRLKEALNNSNQYFDPFKKGYAQILEEMPLPLRDRMERAIQHDHVLPISLKNFIKNLDDLREYRHWLEHYDDRIKKGSPKKISDERAVQIITLMILPFLSAHMKGRIIHHARNMGMRHREIEQFIAPIDKIIRDNIASRRDASKYINGLKKRKSNEEIKEFITEKYGNAPSDMAVHRFAKQEKKKRNDLETRKQALTNLYNRYFDKDHWPRYNHENFLIRYQFLGKSRIKEVEEYIIEQNPDKKHIDFILDIEPIFMLSFEISLIIHIWFSDLEVKGVPIRDRKKLNKLNDKAARMVDIRNQIAHGGWIWRIENNAKNGEFYSITEIMEGLFAVLDHPNINDKAQYKNDLITALQGAFLRCKKSYIYENIKDGDPNQNRARYVINYWSTKNRDKFADRHGVDAKWRVERRIPLRKMAATWMRDLKKL
>NZ_CP018154.1|WP_072559396.1|1693517_1695545_+|RNA-polymerase-sigma-factor-RpoD
MAKKPVNSKSTQDKDAPLIDLNEASVKKLITRAKKRGYITYDEINEALPQDQMTSEQIEDVMSAISEMGVNIVESEDDAAEENDDDGIETADDDSPKKSAPAATAVKKAANDRTDDPVRMYLREMGAVELLSREGEIAIAKRIESGRDTMILGLCESPITFHAIIDWSNALNEGEMQLREILDLDAMLSKEPAPENLEDDAEDDGEISEKTAGPSYKDDDDVEDEEDDIIDDDEDEEAAMRRKRRAEEEEEEDNTLSLAQMEETLKPAALEKFSTITKLFGKFSKAQEKRMIALANGEELSTASERSYQNMREQLTAEVESVQFHASKIEFLVDQLYSFNRRLTALGGQMLRLAERHKVPRKQFLDSYMDHEMDENWLSDVSKIDKKWAKFAENEAVSVERIRTEISDISAATGMSLGEFRRIVNMVQKAEREARIAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSRQFLHEQGREPTPEEMAERLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLGDFIEDKNAIIPVDAAIQANLKETVTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKMRSFLDQ
>NZ_CP018154.1|WP_072559395.1|1691593_1693480_+|DNA-primase
MALDNRWFDELRARTTLSALIGRSVKVQKAGREYKACCPFHNEKTPSFTINDEKGFYHCFGCGAHGDVIKWMTDHQGLPFMDAIKQLASEAGMEVPASDPKAAKRKEKRDSLFDVMTAAAAYFQEELQRPGGAIARDYLLSRGVRDNIIARFGMGFAPNDRQAIKVALSQFKEESLIEAGLLIKVDDKEPYARFRGRLMIPILDQRGRCIAFGGRILGDGEPKYLNSPDTPLFDKGRTLYNLNIASTASRQSDRIIAVEGYMDAIALAQSGIDDVVAPLGTAMTENQLMMMWRLVDKPLLCFDGDAAGQKAAMRAASRALPLLKPGKSLRFIQMPAGMDPDDVVNNQGKKVFDDLVNNASSLLDKIWEYEKQSQPLDGPEDKAGLKQRLGVYLSAIADADIKGHYREAFDQKLSDLFKRPQQIYQQNNQTGRNFQRFDPKKPNWKRQNSPPSSAVRTIASKGSDILMSMILGSLLRDTRLIPQYFESLLELHPSDELDAQILNALINVNDSKERLDSDAIYTILGEKLYNRASSLLRADSMNLVSSNGNIAKDDKSEGHKAGFLGEAIDLYCRKPKLEESLRLANLRAAQAQSDAEFEQAGKDVLELANALRELEQKLADILIASAND
>NZ_CP018154.1|WP_072559394.1|1691114_1691567_+|aspartyl-tRNA-amidotransferase
MIRERLKTAQIAAMKSGEKDRLATIRLMLAKVKDRDIELRMSQPSDDDDAMIIDVLQKMVKQRRESIAMFEQGGRTELAAVEQAELIIIEEFLPAQLDEAATIAIIDAIKAETGASSMKDMGKVVALLKQRHGSELDMSKASALVKSALS
>NZ_CP018154.1|WP_072559393.1|1689730_1690915_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MANIAPDTHGNKPTAIILFADGRVIYGYGFGAQGHKIGELCFNTSITGYQEIMTDPSYAGQFINFTFPHIGNVGTNEEDVEARKSHAMGCVVREDVTNPSNFRSSGHFKTWMEQQGLIGICGVDTRAITRMIRKSGAPNVIIAHHPDGKFDLDALAQDLNQWGGLLGADLAKEVTSSGQSKWAGDVWQLGQGFNSHDMNDVKDADNRPHIVAIDYGAKDNIFRNFVKSGAKITVVPANISFDEVMDLAPDGVFLSNGPGDPAATGEYAVPVIKSLLERDVPIFGICLGHQMLALAAGAKTIKMHQGHRGANHPVKRHDGGLVEITSMNHGFAVDGASLPSNVRETHVSLFDGSNCGIEIDGKQAFSVQYHPEASPGPQDSFYLFDKFVSNLKKK
>NZ_CP018154.1|WP_072559392.1|1686338_1689728_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILIIGAGPIIIGQACEFDYSGTQAVKALKEEGYHIILVNSNPATIMTDPDMADATYVEPITPEVVAKIIEKERPDAVLPTMGGQTALNTALALYEDGTLEKFGVEMIGATAEAIDKAEDREKFRQAMDRIGLENPRAAIAAAPAIKNDQGKIIGYDRPQGVANAMKYLEDIGLPAIIRPAFTMGGTGGGIAYNREEYEHFCRTGIEASPVGQILIDESLLGWKEYEMEVVRDKNDNAIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRTASLNVLREIGVETGGSNVQFAVNPADGRLVVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDEITNDITGATPAAFEPTIDYVVTKIPRFAFEKFKGSSSNLSTAMKSVGEVMAIGRNFTESFQKALRGLETGLDGLNRVRDLIGADEDNIIAELSKTSPERLLVVAQAMREGFSNEKIHNITSYDPWFLEQIRSIVDAENDIIANGLPNDAVKLRKLKSMGFSDVRLANLAIDSVHVHGGAGRTLADSGGLIGEAIRAMAGATSAAEVRALRHKLGVRPVYKRIDSCAAEFEAITPYMYSTYEAPIFGEAECEAEPSDRKKVVILGGGPNRIGQGIEFDYCCCHACFALNEVGYETIMVNCNPETVSTDYDTSDRLYFEPLTDEDVLELLEVEKSKGELLGVIVQFGGQTPLKLAQALEDAGIPILGTSPDAIDLAEDRERFAALINKLKLKQPENGIARSREEAISVAEKIGYPVLIRPSYVLGGRAMEIVDGTAQLEDYIATAVQVSGNSPVLIDQYLRDAIEVDVDAICDGDDVVVAGVLQHIEEAGVHSGDSACTLPPYSLSDEIIDEIKRQTVMLAKALYVKGLMNIQFAVKDGDVYLIEVNPRASRTVPFVAKAIGAPVAKIAARVMAGEKLADLPKINLDIDYMAVKEAVFPFNRFPGVDPVLSPEMKSTGEVMGIDKKFPMAFAKSQMGAGQKLPQSGTVFISVKDTDKPVILPAAQMLADMGFDIVATGGTATYLQSHHVPSVTRVNKVAEGRPHIVDLIKDGTISLVFNTTEGWQSLRDSKSIRASSMDVAIPSYTTAAASVAAVHAIKAIRTETLEVRSLQDYYNKRK
>NZ_CP018154.1|WP_072559391.1|1685769_1686246_-|transcription-elongation-factor-GreA
MASSDKIPMLAEGFEKVTSELKLLRAERPKIVEAIEEARAHGDLSENAEYHAAKERQGQVEAMISDLEAKVGKAQIIDPATLSGDKVIFGATIHLLDENDKPVKYQLVGETEADAKIGRISYSSPIGRALIGRKVDDEIEVVVPSGEKYYLIEKIEFI
>NZ_CP018154.1|WP_072559390.1|1685121_1685730_-|rhomboid-family-intramembrane-serine-protease
MKYRFAVICLMAVNIIIFLLTLVPQISNYFILQGGFIPLRLSQTPIFETGEGFLIPPLLTLFTSTFLHGGFFHLLMNMLLLGIIGGIVENITGTRKFLLIYFCGAFAGCLAEFAVNPMSDLPIIGASGGISAIIAVQMMLMPAKAITPWGGLSVYWTRFIQLTLLWAILNFGMMLFLSDMNIAVYAHMGAFIAGLLSVKLLK
>NZ_CP018154.1|WP_072559389.1|1684880_1685111_+|DUF4170-domain-containing-protein
MTDKAKMHLVFGGRVSDPRSLDFTNLNALDIVGIFPNYEEAEDAWRSSAQRTVDDAEMKYVVVHLHRLLQPDEAAE
>NZ_CP018154.1|WP_072559388.1|1684320_1684818_+|hypothetical-protein
MANKTSNDIKTARDKISAGKSNIANATSNIGQKAADIRQKAVDYSKNSSEKSKKIAQKAKNSSVNFVENNPLGAVASGLVFGALLAALIPTSEKEKMAVKKGTANLKDKAYKAVDAAKTALAENSQDLNQSAKNSYGDLLEKAANLVKNAGKAAKDAANISDKDK
>NZ_CP018154.1|WP_072559399.1|1697734_1698445_+|hypothetical-protein
MTLTAQLSSPANDWVRDIFGSVARDGSGMAIDKLTQYLNDPDDKHRRHRSLLVGQLHADICHFLNLCHGQQPGVVDYAENKITGDEAKIWAAKAAIGFGKERDLLNQLTIAAGPPARQAGHDMALHLTQDQPKNLAMLASSDRKGCALGCAMGFVADWHIIRDLLNSLSMKFDLPKSELTLPSIAETMEICVIEGNGPALQRAIRFGFEQVCAQQKGFWAIIDARHQQRLNEVLYG
>NZ_CP018154.1|WP_072559400.1|1698541_1699384_+|MoxR-family-ATPase
MQFEGTQNYVASDDLKVAVNAVVKLRRPLLIKGEPGTGKTVLAHEISKALDAPLIEWNIKSTTKAHQGLYEYDAVARLRDSQLGDERVHDIKNYIKKGKLWDAFTSPKLPVLLIDEVDKADIEFPNDLLQELDRMEFYVYETQELIKAAERPIVVITSNNEKELPDAFLRRCFFHYIKFPDRETMQEIINVHFPDIQKILVSRAMDIFYEVRDVPGLKKKPSTSELLDWLKLLLYEDMPLEVLQNKDPTKAIPPLHGALLKNEQDIMLFERLAFMARRNS
>NZ_CP018154.1|WP_072560692.1|1699413_1700259_+|DUF817-domain-containing-protein
MMHSRFYQIRLVLEEYSPSGKWQSWIFEFLLFGFKQAWACLFGGLLLGLILLTYFLYPENIPIARYDFLVVMAVAIQISLILFRLETIAEARIILIFHIVGTVMEIFKTAHGSWVYPENGYLKIMNVPLFSGFMYAAVGSYIARIWRIFNMRFSHYPSMAITYIIAMLIYINFFTHHYFYDVRYFLFAVIIFIYLKCFVYFKVLREYRKMPLLLGLLLVALFIWFAENIATFAGAWAYPNQTKIWQMVSIDKLGAWFLLMYISFILVSIIQKPSPPQIYAE
>NZ_CP018154.1|WP_072559401.1|1700246_1701647_-|methyl-accepting-chemotaxis-protein
MIQQKIETNAQDIWSEKLAQQCGEVTMSCSEVSGVVLDVIESSDLVKEKQAELLKVFVELDESQIEVLNACAKAKQQTSDAKSHLENSKDEIENSAHQFLDLVTLIRQMGERITSFSTSINDVRKVAALIEQIAKTTNMLALNASIEAEKAGDAGATFAVVAAEVKTLSQNTRSATNEIAQNMANVANEADYIISQINNGIKKTNGMDQRLNAISTTLNNVANMVSKVDQQNDNIVNQSNELRLLMEQSKSGLQIVANRVDENNKLLVSAHDRTDATELMANNMFDIIVKSGASKIDTPFVELACQKAKEIKELTDRLIAENKIQISDLFDRNYIPVPGSNPERFTNNFTMFADRYWRPFMDEVKASGPNIFSAVLTDVNGYLPTHCSEYSRTPTGDITHDTKYCRNGRKILEGCDISAKQSTDLYTMAVYRHEGNGTKYQTVRNVYVPLYFDGKRWGDFEIAYSA
>NZ_CP018154.1|WP_072559402.1|1701807_1702989_+|VWA-domain-containing-protein
MFFNFMDELRAAGVPASLKEHLMLLEALDEEVINRSPEEFYYLSRAILVKDEAHLDRFDQIFDKMFKGIFSNIGSEENQIPEDWLKAVAEKYLSAEEMEKIKSMGSWEELMDTLKKRLEEQEKRHQGGNKWIGTGGTSPFGNSGYHPEGVRIGGESKHKKAVKVWQKREFQNLDNERELGTRNIKIALRRLRRFAREGAADELDIDGTISGTAKQGWLDIQMRPERRNAVKLLLLLDVGGSMDPFIKLCEELFSAATTEFKNMEFFYFHNCPYEGLWKDNNRRFTERTSTWDLMHKFPHDYKLIFVGDAAMSPYEISHPGGSVEHFNEESGATWMQRLTGTYPSAIWLNPVPKNQWNYSQSTKLMRQLMNDRMYPLTLEGLDEGMRTLTRKKS
>NZ_CP018154.1|WP_072559403.1|1703000_1704083_-|anhydro-N-acetylmuramic-acid-kinase
MSGTSRDGIDVALLETDAKGYNKLAAFYEMSYEGAFKSRLARACEMALALNSPSEATDYIADVEHELTMLHAKAIDKLLSLADAAHAMKDREVAAIGFHGHTVAHRPEKGWTWQIGDAKKLAFLTNLPVIFNMRQVDVDAGGQGAPLLPVYHAALAHNLRKPAAILNLGGVANISWISENGEIIAFDTGMANALIDDWVSKYSDLSYDKNGAIAARGKIDEAIVSALLNHDFFAKKWPKSLDRDDFNLVRLSDLSLEDGAATLTAFTVRAVKIALNMLPQRPQEIYICGGGRHNIFIMQQLAEICGVEVHNVDKLDWNGDSIEAEGFAYIAARVLKGAQYSFAETTGRQSDIIMPKIYLP
>NZ_CP018154.1|WP_072559404.1|1704137_1705373_+|tyrosine--tRNA-ligase
MTQKYQSDLLNLLHDRGYIHQITDENGLDQLAQQQIVPGYIGFDATAPSLHIGSLVQIMMLRRLQQAGHKPIVIMGGGTTKIGDPTGKDESRKMLSQEDIDNNINSISNIFKQFLNFGDGPTDAVIIDNSDWLDKLEYLPFLRDVGRHFTINRMLSFESVKLRLDREQPLTFLEFNYMILQAYDYLTLAKERGCRLQMGGSDQWGNIVNGIELTRRIESIQAFGLTTPLITTADGGKMGKTANGAIWLNADQLSPYDYWQFWRNVQDADVGRFMRLFTDIPLSTIAEYEKLEGAEINDAKKILADACTAMAHGEDAAAQAADTAAKVFEQGSIGEDLPNFAHNGDAISLIDAMVELQLVASKKEARRMIAAGAARIEGEAITDENHIIADSGVDLKISAGKKKHGLLHFAK
>NZ_CP018154.1|WP_072560693.1|1705497_1705800_+|hypothetical-protein
MAMDLRRAARHRTDINVNSATRKGEEHLLHIVNISAHGFMIDNHSVLNRGDRVTLRLPIIGEIEAYMIWSIEERAGFQLERVIRLPDFIALLDEIGSMRR
>NZ_CP018154.1|WP_072559405.1|1705818_1707888_-|ATP-dependent-DNA-helicase-RecG
MRPSILNPSFREIETIKGVGPGIKRALTALKLYRVKDIIYHFPNKWMYRHKIANLDEAQLGQIIILKIQITEHKSSSSQRSPTRIIGLDAAGNALSLIFFGRNGGYARKQFPLETQIYVSGKLEQYGDEWQIIHPEIRTENNDNNAEKDKIIIEPVYALSAGLTQHKMGNIVKQCNEDLPKFDEWIEPSLKNKFQWPNWHDAILSVHKGPDETARNRLAYDEIFSNQLALRLIRQSMDRRAAIKINRTGHLIDKLKLPFNLTNAQQRALSEIEENLQQSTPMLRLLQGDVGAGKTMVAVMTMLFGIENGHQCALLAPTEILARQHFATLSVMLGKIGVNVAILTSREKGKVRESTLMGLANGEIDILVGTHAIFQEKVIYKNLAIAIIDEQHRFGVAQRLMLSNKAVGTPHLLVMTATPIPRTLALASYGEMDVSVLDELPPGRTPVDTRIASSDRMDEIYAGLRRHIEEGKQGFWVCPLVEESELSHMTSAEERAASLRQVFGDKIGIVHGRMKGPEKEEVMRRFIDREFAILVATTVIEVGVDVPNASLMIIEHAENFGLAQLHQLRGRVGRGAEKSSCLLIRNPQISEIAKTRLKLMRSTNDGFIIAEEDLKQRGPGEILGTRQSGDSPFNIATAEQLSEYLPIANDDAKLLLQRDGGLKGPRGEAARILLYLMERDAGVELLRSG
>NZ_CP018154.1|WP_072560694.1|1708004_1708292_+|succinate-dehydrogenase-assembly-factor-2
MDQETRKKLHYRAWHRGTREADMMVGGFFDTYSSNWDADQITWFERLLMEQDVDIMGWAMGTINVPSSFEGDMMNLFKRLDFIKLVDELQNISKD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018154_8	8.1\|1697259\|23\|NZ_CP018154\|PILER-CR	1697259-1697281	23	MN905160	Pseudomonas phage PE09, complete genome	82691-82713	2	0.913
NZ_CP018154_8	8.1\|1697259\|23\|NZ_CP018154\|PILER-CR	1697259-1697281	23	MT670419	Pseudomonas phage phiPsa315, complete genome	82025-82047	2	0.913
NZ_CP018154_8	8.2\|1697325\|23\|NZ_CP018154\|PILER-CR	1697325-1697347	23	MK552327	Pseudomonas phage Psa21, complete genome	110044-110066	3	0.87
NZ_CP018154_2	2.1\|362985\|30\|NZ_CP018154\|CRISPRCasFinder	362985-363014	30	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	211031-211060	7	0.767
NZ_CP018154_8	8.3\|1697255\|30\|NZ_CP018154\|CRISPRCasFinder	1697255-1697284	30	NZ_CP016458	Blastomonas sp. RAC04 plasmid pBSY18_2, complete sequence	130656-130685	7	0.767
NZ_CP018154_2	2.1\|362985\|30\|NZ_CP018154\|CRISPRCasFinder	362985-363014	30	NZ_CP054032	Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence	719800-719829	8	0.733
NZ_CP018154_8	8.3\|1697255\|30\|NZ_CP018154\|CRISPRCasFinder	1697255-1697284	30	NZ_CP033467	Enterobacter cloacae strain E3442 plasmid p3442-FRI-1, complete sequence	7054-7083	8	0.733
NZ_CP018154_8	8.3\|1697255\|30\|NZ_CP018154\|CRISPRCasFinder	1697255-1697284	30	NZ_AP019635	Enterobacter sp. 18A13 plasmid pECC18A13-1, complete sequence	6446-6475	8	0.733
NZ_CP018154_8	8.3\|1697255\|30\|NZ_CP018154\|CRISPRCasFinder	1697255-1697284	30	NZ_AP019635	Enterobacter sp. 18A13 plasmid pECC18A13-1, complete sequence	14308-14337	8	0.733
NZ_CP018154_2	2.1\|362985\|30\|NZ_CP018154\|CRISPRCasFinder	362985-363014	30	CP001771	Spirosoma linguale DSM 74 plasmid pSLIN02, complete sequence	79279-79308	9	0.7
NZ_CP018154_8	8.4\|1697321\|30\|NZ_CP018154\|CRISPRCasFinder	1697321-1697350	30	MK552327	Pseudomonas phage Psa21, complete genome	110040-110069	9	0.7

1. spacer 8.1|1697259|23|NZ_CP018154|PILER-CR matches to MN905160 (Pseudomonas phage PE09, complete genome) position: , mismatch: 2, identity: 0.913

ggaaggcggccttaaagacctga	CRISPR spacer
ggaaggcgtccgtaaagacctga	Protospacer
******** ** ***********

2. spacer 8.1|1697259|23|NZ_CP018154|PILER-CR matches to MT670419 (Pseudomonas phage phiPsa315, complete genome) position: , mismatch: 2, identity: 0.913

ggaaggcggccttaaagacctga	CRISPR spacer
ggaaggcgtccgtaaagacctga	Protospacer
******** ** ***********

3. spacer 8.2|1697325|23|NZ_CP018154|PILER-CR matches to MK552327 (Pseudomonas phage Psa21, complete genome) position: , mismatch: 3, identity: 0.87

ttattacacaacatcaaagccag	CRISPR spacer
ttattaaacaacatcaaagccgt	Protospacer
****** **************.

4. spacer 2.1|362985|30|NZ_CP018154|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 7, identity: 0.767

tcgcttcgccatccgaccaaaagattgaac	CRISPR spacer
tcgcttcgccagccgacgaaaagcctcttc	Protospacer
*********** ***** ***** .*   *

5. spacer 8.3|1697255|30|NZ_CP018154|CRISPRCasFinder matches to NZ_CP016458 (Blastomonas sp. RAC04 plasmid pBSY18_2, complete sequence) position: , mismatch: 7, identity: 0.767

tgaggaaggcggccttaaagac---ctgattga	CRISPR spacer
ggacgaaggcggccttaaagacgaactgcc---	Protospacer
 ** ******************   *** .

6. spacer 2.1|362985|30|NZ_CP018154|CRISPRCasFinder matches to NZ_CP054032 (Rhizobium sp. JKLM13E plasmid pPR13E01, complete sequence) position: , mismatch: 8, identity: 0.733

tcgcttcgccatccgaccaaaagattgaac	CRISPR spacer
tggaaaacgcatccgaccaaaagatcgaac	Protospacer
* *      ****************.****

7. spacer 8.3|1697255|30|NZ_CP018154|CRISPRCasFinder matches to NZ_CP033467 (Enterobacter cloacae strain E3442 plasmid p3442-FRI-1, complete sequence) position: , mismatch: 8, identity: 0.733

tgaggaaggcggccttaaagacctgattga	CRISPR spacer
cccgtgtggcggcctgaaagagctgattga	Protospacer
.  * . ******** ***** ********

8. spacer 8.3|1697255|30|NZ_CP018154|CRISPRCasFinder matches to NZ_AP019635 (Enterobacter sp. 18A13 plasmid pECC18A13-1, complete sequence) position: , mismatch: 8, identity: 0.733

tgaggaaggcggccttaaagacctgattga	CRISPR spacer
cccgtgtggcggcctgaaagagctgattga	Protospacer
.  * . ******** ***** ********

9. spacer 8.3|1697255|30|NZ_CP018154|CRISPRCasFinder matches to NZ_AP019635 (Enterobacter sp. 18A13 plasmid pECC18A13-1, complete sequence) position: , mismatch: 8, identity: 0.733

tgaggaaggcggccttaaagacctgattga	CRISPR spacer
cccgtgtggcggcctgaaagagctgattga	Protospacer
.  * . ******** ***** ********

10. spacer 2.1|362985|30|NZ_CP018154|CRISPRCasFinder matches to CP001771 (Spirosoma linguale DSM 74 plasmid pSLIN02, complete sequence) position: , mismatch: 9, identity: 0.7

tcgcttcgccatccgaccaaaagattgaac	CRISPR spacer
gaaccagcccatccgaccgaaagattgaag	Protospacer
  .*.   **********.**********

11. spacer 8.4|1697321|30|NZ_CP018154|CRISPRCasFinder matches to MK552327 (Pseudomonas phage Psa21, complete genome) position: , mismatch: 9, identity: 0.7

tgattattacacaacatcaaagccagttcc	CRISPR spacer
atgttattaaacaacatcaaagccgttgaa	Protospacer
  .****** **************. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1378568 : 1388403

uncultured_Mediterranean_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072559150.1\|1378568_1379726_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	2.4e-96	47.3
WP_072560578.1\|1379755_1380889_-	capsule biosynthesis protein CapF	NA	NA	NA	NA
WP_072559151.1\|1380891_1381923_-	SDR family NAD(P)-dependent oxidoreductase	A0A2K9V8D7	Bandra_megavirus	2.9e-37	35.5
WP_072560580.1\|1382108_1383251_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	5.2e-27	28.2
WP_072559152.1\|1383381_1383582_-	hypothetical protein	NA	NA	NA	NA
WP_072559153.1\|1383714_1384128_-	hypothetical protein	R4JN18	Pseudoalteromonas_phage	2.3e-17	40.0
WP_072559154.1\|1384180_1384717_-	hypothetical protein	A0A0D4DCJ5	Acinetobacter_phage	3.3e-48	51.1
WP_072560582.1\|1385410_1385725_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.6e-08	35.6
WP_072559155.1\|1385802_1387401_+	protein translocase subunit SecD	NA	NA	NA	NA
WP_072559156.1\|1387413_1388403_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.7e-45	39.2

DBSCAN-SWA_2

2297760 : 2348173

Bacillus_phage(11.76%)

portal,capsid,head,protease,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072560915.1\|2297760_2298162_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_072559862.1\|2298175_2298658_+	GAF domain-containing protein	NA	NA	NA	NA
WP_083550607.1\|2299559_2300264_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_072559864.1\|2300463_2301213_-	arginyltransferase	NA	NA	NA	NA
WP_072559865.1\|2301313_2302531_-	threonine ammonia-lyase	NA	NA	NA	NA
WP_072559866.1\|2302648_2303518_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_072559867.1\|2303514_2305188_+	amidohydrolase family protein	NA	NA	NA	NA
WP_072559868.1\|2305302_2306322_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_072559869.1\|2306543_2306738_+	preprotein translocase subunit SecE	NA	NA	NA	NA
WP_072559870.1\|2306855_2307392_+	transcription termination/antitermination factor NusG	A0A068C9G5	Rhizobium_phage	7.1e-11	27.1
WP_083550361.1\|2307413_2307947_+	N-acetyltransferase	NA	NA	NA	NA
WP_072559871.1\|2308121_2308550_+	50S ribosomal protein L11	NA	NA	NA	NA
WP_072559872.1\|2308555_2309254_+	50S ribosomal protein L1	NA	NA	NA	NA
WP_156874199.1\|2309350_2311690_-	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	3.2e-15	33.5
WP_072559874.1\|2312169_2312685_+	50S ribosomal protein L10	NA	NA	NA	NA
WP_072559875.1\|2312757_2313129_+	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_072559876.1\|2313769_2314315_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.0e-21	41.9
WP_072559877.1\|2314320_2314983_+	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase	NA	NA	NA	NA
WP_072559878.1\|2315224_2319367_+	DNA-directed RNA polymerase subunit beta	A0A0N9R0K9	Chrysochromulina_ericina_virus	1.8e-24	32.0
WP_072559879.1\|2319459_2323698_+	DNA-directed RNA polymerase subunit beta'	A0A2I7QNZ7	Vibrio_phage	1.1e-66	25.0
WP_156874264.1\|2323818_2324118_-	hypothetical protein	NA	NA	NA	NA
WP_072559880.1\|2324147_2325020_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	9.3e-69	49.3
WP_156874265.1\|2325109_2325640_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_072559882.1\|2325718_2328796_-	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_072559883.1\|2328835_2329903_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_072559884.1\|2330076_2331210_-	OmpA family protein	NA	NA	NA	NA
WP_072559885.1\|2331495_2331945_-	DUF2793 domain-containing protein	M4QP18	Tetraselmis_viridis_virus	1.7e-10	30.4
WP_072559886.1\|2331979_2334289_-	hypothetical protein	J3SVU9	Caulobacter_virus	4.9e-32	42.4
WP_072559887.1\|2334393_2334840_-	hypothetical protein	NA	NA	NA	NA
WP_083550364.1\|2334861_2335707_-	DUF2163 domain-containing protein	A0A1V0DY93	Dinoroseobacter_phage	6.8e-32	28.8
WP_156874266.1\|2335693_2338057_-	TIGR02217 family protein	I7HPG7	Enterobacteria_phage	1.9e-68	31.2
WP_072559889.1\|2338140_2338725_-\|tail	tail tape measure protein	D6PEW0	uncultured_phage	2.1e-08	37.6
WP_156874200.1\|2338717_2338927_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_072559891.1\|2338923_2339232_-	gene transfer agent family protein	NA	NA	NA	NA
WP_072559892.1\|2339228_2339636_-\|tail	phage tail protein	NA	NA	NA	NA
WP_072559893.1\|2339662_2340064_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_072559894.1\|2340084_2340303_-	hypothetical protein	NA	NA	NA	NA
WP_156874201.1\|2340299_2340779_-	hypothetical protein	NA	NA	NA	NA
WP_072559896.1\|2340787_2341069_-	hypothetical protein	NA	NA	NA	NA
WP_072559897.1\|2341127_2341313_-	hypothetical protein	NA	NA	NA	NA
WP_156874202.1\|2341309_2342572_-	hypothetical protein	A0A0A0YWB2	Escherichia_phage	9.2e-17	29.5
WP_083550367.1\|2342677_2343901_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	4.9e-84	41.4
WP_156874203.1\|2344109_2344550_-	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_072559900.1\|2344908_2345346_-\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	4.0e-20	41.2
WP_072559901.1\|2345342_2345651_-	hypothetical protein	K4I011	Acidithiobacillus_phage	6.3e-12	46.6
WP_083550609.1\|2345643_2346771_-\|portal	phage portal protein	W8ECU7	Geobacillus_phage	7.6e-47	32.4
WP_072560929.1\|2346880_2348173_-	DNA-packaging protein	A0A1V0DY66	Dinoroseobacter_phage	2.8e-77	40.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018154

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection