CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP013109	Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence	0 crisprs	NA	1
NZ_CP013107	Sinorhizobium americanum strain CFNEI 73 chromosome, complete genome	2 crisprs	WYL,cas3,csa3,RT,DEDDh	4
NZ_CP013108	Sinorhizobium americanum strain CFNEI 73 plasmid A, complete sequence	0 crisprs	NA	1
NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	0 crisprs	DEDDh,csa3	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

163209 : 259469

Stx2-converting_phage(33.33%)

transposase,integrase

attL 154937:154950|attR 173515:173528

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
154937:154950	attL	NA	NA	NA	NA
WP_064254440.1\|163209_164793_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_064254439.1\|165229_166279_+	hypothetical protein	NA	NA	NA	NA
WP_064254438.1\|166289_167345_+	cysteine synthase family protein	NA	NA	NA	NA
WP_064254437.1\|167344_170047_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_082912498.1\|170144_170612_+\|transposase	transposase	NA	NA	NA	NA
WP_072642870.1\|170605_170704_+\|transposase	transposase domain-containing protein	NA	NA	NA	NA
WP_072642871.1\|171619_173140_-	M81 family metallopeptidase	NA	NA	NA	NA
WP_082912496.1\|174694_175540_+	LuxR family transcriptional regulator	NA	NA	NA	NA
173515:173528	attR	NA	NA	NA	NA
WP_072642802.1\|183380_184715_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_064251615.1\|185133_186393_-	MFS transporter	NA	NA	NA	NA
WP_064251616.1\|187701_188538_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.1e-13	31.0
WP_064251617.1\|188612_195659_-	hybrid non-ribosomal peptide synthetase/type I polyketide synthase	A0A2K9KZV5	Tupanvirus	5.7e-100	27.3
WP_167578734.1\|196162_196747_-\|transposase	transposase	NA	NA	NA	NA
WP_072642872.1\|197755_198121_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_082911904.1\|198727_199843_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_064251621.1\|200192_200552_+	IS66 family insertion sequence hypothetical protein	A0A1B0YZU7	Pseudomonas_phage	6.6e-05	51.9
WP_173827762.1\|200688_200979_-\|transposase	transposase	NA	NA	NA	NA
WP_082911896.1\|201400_201847_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_072597315.1\|201858_202197_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.3e-30	55.4
WP_064251569.1\|202242_203943_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.2e-83	41.1
WP_018237844.1\|203923_204157_-	hypothetical protein	NA	NA	NA	NA
WP_064253154.1\|204369_205647_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_162532530.1\|206072_206231_-	hypothetical protein	NA	NA	NA	NA
WP_072642873.1\|207116_207356_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_082912309.1\|207515_207860_+\|transposase	transposase	NA	NA	NA	NA
WP_064253178.1\|208675_210817_+	methylmalonyl-CoA mutase	NA	NA	NA	NA
WP_064253157.1\|210809_211223_+	methylmalonyl-CoA epimerase	NA	NA	NA	NA
WP_162532531.1\|211985_212315_-	hypothetical protein	NA	NA	NA	NA
WP_082912313.1\|212262_212400_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_064253159.1\|212575_213670_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_064253160.1\|213669_214827_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_064253179.1\|214910_215939_-	transporter substrate-binding domain-containing protein	A0A1B1IT51	uncultured_Mediterranean_phage	9.4e-44	31.1
WP_082912317.1\|216002_217250_-	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_064253161.1\|218177_218858_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_064253162.1\|219605_220445_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_156911506.1\|220575_220728_-	hypothetical protein	NA	NA	NA	NA
WP_064253163.1\|223671_224127_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_064253181.1\|224474_225410_+	aminotransferase class IV	NA	NA	NA	NA
WP_064253164.1\|225492_226683_+	glycine C-acetyltransferase	V5LQ39	Emiliania_huxleyi_virus	2.7e-34	27.7
WP_064253165.1\|229528_230698_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_064253166.1\|231260_232400_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_064253167.1\|233764_234595_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_064253168.1\|234643_235618_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_173827774.1\|235755_236484_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.3e-28	38.4
WP_064253170.1\|236709_237879_+	aminopeptidase P family protein	NA	NA	NA	NA
WP_064253171.1\|238060_238774_+	hypothetical protein	NA	NA	NA	NA
WP_064253172.1\|242179_243349_+	amidohydrolase	NA	NA	NA	NA
WP_064253173.1\|244553_246194_+	MFS transporter	NA	NA	NA	NA
WP_064253174.1\|246808_248131_+	aminotransferase class III-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_037385899.1\|249044_250472_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_064253175.1\|250830_252471_+	MFS transporter	NA	NA	NA	NA
WP_064253176.1\|254411_254879_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_010003750.1\|256420_256765_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_010003750.1\|257457_257802_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_072642842.1\|257876_259469_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	7.6e-77	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP013107

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013107_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013107_1

1215950-1216059

Orphan

Consensus_repeat	Method
GCGGCGCGGACGGTCGTCGCGATCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013107_1

>merge|NZ_CP013107|1|1215950-1216059|CRISPRCasFinder
GCGGCGCGGACGGTCGTCGCGATCGCCACGATCCGGACGCGGACCACGGTCACCGAAACCACCACGGTCCGGACGGTCGCCGTCGCGGCGCGGACGGTCGTCGCGGTCGC

>NZ_CP013107|1|1|1215950-1216059|CRISPRCasFinder
GCGGCGCGGACGGTCGTCGCGATCGC	CACGATCCGGACGCGGACCACGGTCACCGAAACCACCACGGTCCGGACGGTCGCCGTC
GCGGCGCGGACGGTCGTCGCGGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013107.1\|WP_012707461.1\|1215655_1215904_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP013107.1\|WP_037379733.1\|1213897_1214473_-\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP013107.1\|WP_064252251.1\|1219465_1220203_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	unknown	unknown	gnl\|CDD\|171820
NZ_CP013107.1\|WP_003531676.1\|1220543_1220780_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP013107.1\|WP_064252253.1\|1217117_1218161_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381320
NZ_CP013107.1\|WP_037379753.1\|1224824_1225484_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP013107.1\|WP_037380004.1\|1223933_1224821_+\|YicC-family-protein	unknown	unknown	gnl\|CDD\|224477
NZ_CP013107.1\|WP_037379755.1\|1225499_1226324_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP013107.1\|WP_064252252.1\|1218486_1219431_+\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP013107.1\|WP_037379735.1\|1214509_1215463_-\|DUF2232-domain-containing-protein	unknown	unknown	unknown
NZ_CP013107.1\|WP_037379752.1\|1222547_1223735_+\|endolytic-transglycosylase-MltG	unknown	unknown	gnl\|CDD\|224475
NZ_CP013107.1\|WP_064252256.1\|1212029_1213529_-\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|181676
NZ_CP013107.1\|WP_064252254.1\|1216750_1217083_+\|four-helix-bundle-copper-binding-protein	unknown	unknown	gnl\|CDD\|153434
NZ_CP013107.1\|WP_064252260.1\|1208745_1209885_-\|alanine-racemase	unknown	unknown	gnl\|CDD\|223858
NZ_CP013107.1\|WP_064252258.1\|1210949_1211660_+\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NZ_CP013107.1\|WP_037379723.1\|1207205_1208609_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|236994
NZ_CP013107.1\|WP_064252257.1\|1211656_1211962_+\|AzlD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226916
NZ_CP013107.1\|WP_064252259.1\|1210027_1210885_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP013107.1\|WP_037379721.1\|1206463_1207063_-\|CvpA-family-protein	unknown	unknown	gnl\|CDD\|224205
NZ_CP013107.1\|WP_064252286.1\|1220997_1222263_+\|beta-ketoacyl-ACP-synthase-II	unknown	unknown	gnl\|CDD\|235987

Protein	Function_ID	Function_description	E-value
NZ_CP013107.1\|WP_012707461.1\|1215655_1215904_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	1.52598e-37
NZ_CP013107.1\|WP_064252257.1\|1211656_1211962_+\|AzlD-domain-containing-protein	gnl\|CDD\|226916	COG4541, COG4541, Predicted membrane protein [Function unknown].	7.48409e-16
NZ_CP013107.1\|WP_064252251.1\|1219465_1220203_+\|3-oxoacyl-[acyl-carrier-protein]-reductase	gnl\|CDD\|171820	PRK12936, PRK12936, 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed.	8.83897e-169
NZ_CP013107.1\|WP_003531676.1\|1220543_1220780_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	3.25258e-33
NZ_CP013107.1\|WP_064252253.1\|1217117_1218161_-\|aldo/keto-reductase	gnl\|CDD\|381320	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins. Escherichia coli Tas protein is the prototype of this family. It is an NADP(H)-dependent aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NADP(H) as a hydride donor.	6.53115e-173
NZ_CP013107.1\|WP_037379753.1\|1224824_1225484_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	2.03349e-116
NZ_CP013107.1\|WP_037380004.1\|1223933_1224821_+\|YicC-family-protein	gnl\|CDD\|224477	COG1561, COG1561, Uncharacterized stress-induced protein [Function unknown].	8.88263e-114
NZ_CP013107.1\|WP_037379755.1\|1225499_1226324_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	6.14335e-132
NZ_CP013107.1\|WP_064252252.1\|1218486_1219431_+\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	3.05833e-134
NZ_CP013107.1\|WP_037379752.1\|1222547_1223735_+\|endolytic-transglycosylase-MltG	gnl\|CDD\|224475	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism].	1.3222e-148
NZ_CP013107.1\|WP_064252256.1\|1212029_1213529_-\|replicative-DNA-helicase	gnl\|CDD\|181676	PRK09165, PRK09165, replicative DNA helicase; Provisional.	0
NZ_CP013107.1\|WP_064252254.1\|1216750_1217083_+\|four-helix-bundle-copper-binding-protein	gnl\|CDD\|153434	cd08026, DUF326, Cysteine-rich 4 helical bundle widely conserved in bacteria. This functionally uncharacterized protein forms a 4-helical bundle with a bromodomain-like topology. It is present in major bacterial lineages and contains highly conserved cysteines in a repeated pattern, whose sidechains appear buried. Some family members have been (mis)annotated as putative ferredoxins.	3.25598e-22
NZ_CP013107.1\|WP_064252260.1\|1208745_1209885_-\|alanine-racemase	gnl\|CDD\|223858	COG0787, Alr, Alanine racemase [Cell envelope biogenesis, outer membrane].	6.57712e-151
NZ_CP013107.1\|WP_064252258.1\|1210949_1211660_+\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	6.78392e-61
NZ_CP013107.1\|WP_037379723.1\|1207205_1208609_-\|DNA-repair-protein-RadA	gnl\|CDD\|236994	PRK11823, PRK11823, DNA repair protein RadA; Provisional.	0
NZ_CP013107.1\|WP_037379733.1\|1213897_1214473_-\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	3.48401e-64
NZ_CP013107.1\|WP_064252259.1\|1210027_1210885_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.57905e-30
NZ_CP013107.1\|WP_037379721.1\|1206463_1207063_-\|CvpA-family-protein	gnl\|CDD\|224205	COG1286, CvpA, Uncharacterized membrane protein, required for colicin V production [General function prediction only].	3.34251e-48
NZ_CP013107.1\|WP_064252286.1\|1220997_1222263_+\|beta-ketoacyl-ACP-synthase-II	gnl\|CDD\|235987	PRK07314, PRK07314, beta-ketoacyl-ACP synthase II.	0

>NZ_CP013107.1|WP_012707461.1|1215655_1215904_-|30S-ribosomal-protein-S18
MAEVSSAPVRRPFHRRRKTCPFSGANAPRIDYKDVRLLQRYISERGKIVPSRITAVSQKKQRELAQAIKRARFLGLLPYVVS
>NZ_CP013107.1|WP_037379735.1|1214509_1215463_-|DUF2232-domain-containing-protein
MKNWNRTSLITGALAGVTAALLSMGANTQSSLAIVLYAASALPILIAGLGWGNTAALTAIIVAGATAASLVSPYFALLILVVTLVPAAWLSHLANLARPASELGGPEGALAWYPLSDILGHLAGLVTLGMIIVATIVGYDSSVSDLMVDMLVEAVKAQEPLYNPDAATISQFKSMFTLALPLVQGALWVVMLFAAYYVATRIVQMSGKSLRPREDIPSSLRMHRNAIFVFLGGLILTFLGGAPAAIGALVCGTFGAGFLLSGFASFHFRTRGKSWRLPVLWIAYLSVLVFTIPAVFFLLSGLTDTRRTIAVTPTGKS
>NZ_CP013107.1|WP_037379733.1|1213897_1214473_-|50S-ribosomal-protein-L9
MEVILLERIARLGQMGETVKVRDGFARNYLLPLGKALRANAANKARFESERATLEARNLERKSEAQKVADKLDGKSFVIVRSAGETGQLYGSVAARDIIDVLAAEGFNINRNQVNLNQPIKAIGVHKVTLHLHAEVDVVIEINVARSAEEAERQAKGESLTSAEAIYGVDEDALKPEDFFNPEAEFAGEEE
>NZ_CP013107.1|WP_064252256.1|1212029_1213529_-|replicative-DNA-helicase
MNDAARKLAPLPKDQADQHYREAPNNLEAEQALLGAILVNNDAFYRVSDFLKPVHLHEPLHRKIFEVASEIIRMGKTANPVTVKTFLKADDKVGDLTVAQYLARLAAEAVSIINAEDYGRAIYDLALRRSLITIGEDMVNIAYDAPLDMPPQSQIEDAERRLFELAETGRYDGGFQSFNDAVALAIDMAGQAFERDGHLSGISTGIHSLDGKMGGLQRSDLIILAGRPGMGKTSLATNIAYNIAAAYEPEVQPDGSFKAKNGGVVGFYSLEMSSEQLATRIISEQTEVSSSKIRRGDISEADFEKLVACSQMMQKVPLYIDQTGGISIAQLAARARRLKRQRGLDVLVVDYVQLMSGSKKSGENRVQEITEITTGLKALGKELNVPIIALSQLSRAVESREDKRPQLSDLRESGSIEQDADVVLFVFREEYYVKNMEPRDEFDPKYEEWKMKMEQVKGTADVIIAKQRHGPTGTVKLAFQSEFTRFTDLADSSFTQYEH
>NZ_CP013107.1|WP_064252257.1|1211656_1211962_+|AzlD-domain-containing-protein
MTLDPDTLLAIIAMAAATVLTRIAGLLVIRFVAIGPQQKRALEAIPPAVLMAVIAPTALVTGLAETLATVATALAAMRLPLLAAVAIGVLVVAIARALIGA
>NZ_CP013107.1|WP_064252258.1|1210949_1211660_+|AzlC-family-ABC-transporter-permease
MTDVRSASISQDFLGGMRAMSPLTVAVMPIGLVFGAVAASKGLSSLEATLMSALVFAGGSQFVAMDIWTHPASWGALAFSALLVNIRHVLMSASLGTKMPAFSGPAKYAAMLLLADEIWAMAEVRAGQARLTPAWYAGLAVPFYCVWVLSSVAGAAAGALLGDPRAIGLDFAFPAVFTVLVMGFWKGRDTGAVLFSSAAAAVFAHQFLPGVWYIAAGAAAGVAATLLTSRRQEVCA
>NZ_CP013107.1|WP_064252259.1|1210027_1210885_+|AraC-family-transcriptional-regulator
MHTISQEEAIEAMPLKGAEQTRFWRDARFKGMECLSATFITHEFAPHAHETFSIGAIEAGSQISTIKGERSQTGPGDLYLINPDETHDGHPGNDGYRYRMIYPSVELFVEILEDITGRPFRGTPCFSRQWLTDLELAAAFRHAHQLLEGKTGALEADEGMFGFLATLFERHGSAIIVPVRKRESSAVHRARDYLLENYSSDIGLDELAKVAGLSRAHLIRAFRKEFHITPHAFLTDKRVREARTLLREGWSPADTAYHCGFADQAHFTRHFKARTGVTPGAFRIG
>NZ_CP013107.1|WP_064252260.1|1208745_1209885_-|alanine-racemase
MHSPEFLAASNRLTIDLTALADNWRAMNERSGKARAAAVLKADAYGIGVAHAAPTLYAAGARDFFVADAEEGAELRPLLPDARIYILAGMWPGNEELFFANDLVPIINSEEQLAGFMAALSERGDHPCVLHVDTGMNRLGLSVEEAVALAHDPARPASFSPVLVMSHLACGDDPKHPMNLYQLQRFREVAAAFEGVPASLANSGGVFLGGDYHFDLTRPGIAVYGGEAVNDAVNPMKPVVTAEARILQLRTVPSGGTASYGASARFTRDSRIATVAIGYADGYHRSVSGGGVTLRQAMPSGAFGFLHGRKVPHVGRVTMDLSLFDVTDLPERAVRAGDYIELFGRNVAIDDVARAGGTIGYELLTSLGHRYCRTYVCGA
>NZ_CP013107.1|WP_037379723.1|1207205_1208609_-|DNA-repair-protein-RadA
MAKTRTQFVCQNCGTVHSRWVGKCDGCGEWNTIVEEDPMGGIGGGPTRAPKKGRPVALTTLSGEIEEAPRIETGISELDRVTGGGFVRGSALLVGGDPGIGKSTVLMQAAAALSRRKHRVIYVSGEEAVAQVRLRAQRLGAADSDVLLAAETNVEDILATLSEGKRPDLVIIDSIQTLWSDTVDSAPGTVTQVRTGVQAMIRFAKQTGTAVVLVGHVTKEGQIAGPRVVEHMVDAVLYFEGDRGHHYRILRTVKNRFGPTDEIGVFEMSDQGLREVANPSELFLGERNEKSPGAAVFAGMEGTRPLLVEVQALVAPTSLGTPRRAVVGWDSARLSMILAVLEAHCGVRLGQHDVYLNVAGGYRISEPAADLAVASALVSSLAGLALPADCVYFGEVSLSGAVRPVSHTAQRLKEAEKLGFSQAVLPSATADLAKSGNGRWSEMESLPDLVARIAGSRRALQQTDEAE
>NZ_CP013107.1|WP_037379721.1|1206463_1207063_-|CvpA-family-protein
MPITILDGIVLGVALFSAILAMVRGFSREVLSVASWVGAAAAAYFLYPYLLPYAKQYTTNDTVAMIGSAAVIFLVALIIISFVTMRIADFIIDSRIGALDRTLGFLFGAARGILLVVVAMLFFNWLVAPPQQPIWVTQAKSKPLLDNLGNKLVALLPEEADATILDRLRGKDTTGEGESDAPPAATEQSPAEETPATNG
>NZ_CP013107.1|WP_064252254.1|1216750_1217083_+|four-helix-bundle-copper-binding-protein
MHHTDPKMQECIENCLVCYRACLSTAMSDCLEAGGKHTEPDHFRLMMVCAEICRTSAHFMLIGTPHHRHVCSECAEICAECAADCERIGDMAECVDACQRCAESCRQMAA
>NZ_CP013107.1|WP_064252253.1|1217117_1218161_-|aldo/keto-reductase
MRYNTLGRTGIKVSEICLGTMTWGSQNTPIEAHGQLDYAVERGVNFIDTAELYPTTPLSAETYGNTERIIGDWLVGRRRRDDVVLATKVAGPGRPYIRNGGPMTPEGIDEALDASLMRLKTDYVDLYQLHWPNRGHYHFRNAWSYDPSRQDKEHVAADLKAILDKLGDLVKAGKIRAIGLSNDTAWGAMKMLDLSERHGLPRIASIQNEYNLLYRAFDLDLAELSHHEDVGLLAYSPLAAGLLTGKYLDGARPAGSRLSINGDLGGRFTPHQEPAVAAYVALAREHGLDPAQMALAFCLTRPFMASVIIGATSIPQLKTDIGAADVTLSQDVLNGIRRLHRLYPAPI
>NZ_CP013107.1|WP_064252252.1|1218486_1219431_+|ACP-S-malonyltransferase
MSIAFTFPGQGSQAVGMGKELAEAFPEAGAVFAEVDDALGERLSDVMWNGPEETLTLTANAQPALMAVSMAVIRVLETKGLDLRSKVSFVAGHSLGEYSALCAAGTFSIADTARLLRIRGNAMQAAVPVGKGAMAAIIGLEHDDVEAVCREASSLGACQIANDNGGGQLVISGEKQAVEKAAALASEKGAKRALMLPVSAPFHSALMEPAAEAMREALSKVEKRDPVVPVVANVLAAPVNDAGEVARLLVEQVTGQVRWRETVEWFAANDVTTLYEIGSGKVLTGLARRIDKTVNGIAVNTPADIDAALAALLA
>NZ_CP013107.1|WP_064252251.1|1219465_1220203_+|3-oxoacyl-[acyl-carrier-protein]-reductase
MFDLSGRKALVTGASGGIGEEIARMLHAQGAIVGVHGTRVEKLEALANTLGERVQIFPANLSDRAEVKALGEKAETELGGVDILVNNAGITKDGLFVRMSDEDWDNVLEVNLTAVFRLTRELTHPMMRRRFGRIVNITSVVGVTGNPGQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGKLNDKQKEGIMAAIPMRRMGSGAEVASAVAYLASNEAGYVTGQTIHVNGGMAMI
>NZ_CP013107.1|WP_003531676.1|1220543_1220780_+|acyl-carrier-protein
MSDIAERVKKIVIDHLGVDAEKVSEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAADSILTVGDAVKFIEKAQA
>NZ_CP013107.1|WP_064252286.1|1220997_1222263_+|beta-ketoacyl-ACP-synthase-II
MRRVVITGTGMVSPLGCGTEVSWSRLVAGGNAARKVTEFEVEDLPAKIACRIPFGDGSDGTFNADDWMEPKEQRKIDPFIVYAMAAADMALADAGWKPESNEDQIATGVLIGSGIGGLEGIVEGGYTLRDKGPRRLSPFFIPGRLINLASGQVSIRHKLRGPNHSVVTACSTGAHAIGDASRLIALGDADVMVAGGTESPICRISLAGFAACKALSTQHNDNPEKASRPYDADRDGFVMGEGAGIVILEELEHAKARGAKIYAEVVGYGLSGDAFHITAPSEDGDGAYRCIQMALKRAGLTAADVDYINAHGTSTMADTIELGAVERLVGGSASKISMSSTKSAIGHLLGAAGAVEAIFSALAIRDNIAPPTLNLDNPSVETKIDLVPHVARKREINVALSNSFGFGGTNASLVLRRYQGH
>NZ_CP013107.1|WP_037379752.1|1222547_1223735_+|endolytic-transglycosylase-MltG
MSDSNDNSAAQFGRNETGSNGPIIPKSASEALRPERVPEPPKRSRKARSQVVIFLNFLMTVVVFVVLAAAGAVYYAMHEYEKAGPLQANQNFIVRSGAGIIEIAEGLERNGIVTDGRVFRFVSEAYLDNQTLKAGEYEIKAHASMQEIMELLKSGKSILYAVSLPEGLTVKQMFRKLADDPVLAGDLPTELPAEGSLKPDTYKFTRGTKRAEIVQQMVAAQKALVEQIWDKRDPELPVSSVDEFVTLASIVEKETGRADERPRVASVFINRLEKGMRLQSDPTIIYGIFGGEGKPADRAILKSDLEKETPYNTYIIKGLPPTPIANPGRAALEAVANPSRTPELYFVADGTGGHVFAATLEEHNANVRRWRKLEAEKAAEAAKAAADAATVPEAQ
>NZ_CP013107.1|WP_037380004.1|1223933_1224821_+|YicC-family-protein
MPLQSMTGFARREGSSGRYRWAWELRSVNGKGLDVRLRLPQGLERFEPDCRRLAPQYFSRGNLQIALSVSGGETAVDAVINRGALDAVLKLREQLGDLVDPAPLRFDTLLSLRGIIDLREPEESESERAARDTDIVKGLELALADLMAMREEEGAALEKVLLMQVDRIEELTTTVESDPSRSPSAIAARLAQQIALIMDNASSIDRERLHAEVALLATKADLREEIDRLRAHIAAARELLTKGGPVGRKLDFLAQEFNRESNTICSKSNAAVVSAAGIELKVVIDQFREQVQNLE
>NZ_CP013107.1|WP_037379753.1|1224824_1225484_+|guanylate-kinase
MKSATASPIRIPRRGLMLVISSPSGAGKSTIARNLLEADPELSISVSVTTRAKRLSEIEGRHYHFKTIREFEALRATDSLLEWAEVHGNFYGTPRDAVEAAMAEGRDMLFDIDWQGAQQLQEKMAGDVVSIFILPPSMAELQSRLHRRAEDTEEVIATRLANSRAEIEHWREYDYIVVNDDLDRAFSSVRSIIEAERLRRDRRPGLFEFVNGLLTENPF
>NZ_CP013107.1|WP_037379755.1|1225499_1226324_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MAALDGLPPLRDVIQRHGLDAKKALGQNFLLDLNLTQKIARTAGPLDDVTVIEVGPGPGGLTRAILALGAKKVVAIERDSRCLPALAEIGAHYPDRLDVVEGDALKVDFESLADGPVRIIANLPYNVGTQLLVNWLLPERWPPFWQSMTLMFQREVGLRIVAGADDDHYGRLGVLCGWRTKARLAFDVPPQAFTPPPKVTSTVVHLEPNETPIPCVVSSLEKVTQAAFGQRRKMLRQSLKPLGGEALLGKAGIDPQRRAETLTIEEFCRLANCL

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Crispr_ID: NZ_CP013107_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013107_2

2989236-2989442

Orphan

Consensus_repeat	Method
GCCCATGGCGCGAGCGACGATGATCGCGTCGC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP013107_2

>merge|NZ_CP013107|2|2989236-2989442|PILER-CR
CGCCATCGACGATGATCGCGTCGCGGTTTTCGGCAAGCGCCACCGCTCCTGCCGCCTGCCCGACGACCGGAATGCCCATGGCGCGCGCGACGATGACCACATGGCTGGTGACGGCCCCCTCTTCCAGCACGAGACCGCGGACGTTCTCGCGCGGATAATCGAGCAATTCGGCCGCGCCCATGGCGCGTGCGACGATGATCGCGTCGC

>NZ_CP013107|2|1|2989236-2989442|PILER-CR
CGCCATCGACGATGATCGCGTCGCGGTTTTCG	GCAAGCGCCACCGCTCCTGCCGCCTGCCCGACGACCGGAATGCCCATGG
CGCGCGCGACGATGACCACATGGCTGGTGACG	GCCCCCTCTTCCAGCACGAGACCGCGGACGTTCTCGCGCGGATAATCGAGCAATTCGGCCGCGCCCATGGCGCGTGCGA
CGATGATCGCGTCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013107.1\|WP_064253830.1\|2990528_2991803_-\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP013107.1\|WP_037388497.1\|2998071_2998245_-\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|226366
NZ_CP013107.1\|WP_037388500.1\|2998353_2998674_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013107.1\|WP_064255270.1\|2967701_2969063_-\|protein-glutamate-O-methyltransferase-CheR	unknown	unknown	gnl\|CDD\|224271
NZ_CP013107.1\|WP_064255272.1\|2965439_2967065_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP013107.1\|WP_064253836.1\|2980115_2982068_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|223810
NZ_CP013107.1\|WP_064253827.1\|2995038_2995896_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143596
NZ_CP013107.1\|WP_037388487.1\|2993179_2993725_+\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|223340
NZ_CP013107.1\|WP_173827777.1\|2995985_2996270_-\|glutaredoxin-3	unknown	unknown	gnl\|CDD\|274017
NZ_CP013107.1\|WP_064253835.1\|2982143_2984750_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP013107.1\|WP_064253833.1\|2986111_2987008_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP013107.1\|WP_064253832.1\|2987015_2988098_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP013107.1\|WP_037387899.1\|2969242_2969932_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP013107.1\|WP_064253828.1\|2994613_2995042_-\|DUF1178-family-protein	unknown	unknown	gnl\|CDD\|227630
NZ_CP013107.1\|WP_064253829.1\|2993847_2994594_+\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	unknown	unknown	gnl\|CDD\|235350
NZ_CP013107.1\|WP_064255269.1\|2970104_2973371_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|227334
NZ_CP013107.1\|WP_064253826.1\|2997125_2998025_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273953
NZ_CP013107.1\|WP_064253834.1\|2985156_2985795_-\|DUF4167-domain-containing-protein	unknown	unknown	gnl\|CDD\|372713
NZ_CP013107.1\|WP_064253837.1\|2996290_2997022_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP013107.1\|WP_064255271.1\|2967042_2967705_-\|purine-binding-chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905

Protein	Function_ID	Function_description	E-value
NZ_CP013107.1\|WP_064253830.1\|2990528_2991803_-\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP013107.1\|WP_037388497.1\|2998071_2998245_-\|Flp-family-type-IVb-pilin	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	3.35619e-10
NZ_CP013107.1\|WP_064255270.1\|2967701_2969063_-\|protein-glutamate-O-methyltransferase-CheR	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	4.71381e-76
NZ_CP013107.1\|WP_064255272.1\|2965439_2967065_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	6.14732e-56
NZ_CP013107.1\|WP_064253836.1\|2980115_2982068_+\|M23-family-metallopeptidase	gnl\|CDD\|223810	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane].	5.00226e-49
NZ_CP013107.1\|WP_064253827.1\|2995038_2995896_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143596	cd07572, nit, Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 10.	1.30569e-131
NZ_CP013107.1\|WP_037388487.1\|2993179_2993725_+\|dihydrofolate-reductase	gnl\|CDD\|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	7.51815e-29
NZ_CP013107.1\|WP_173827777.1\|2995985_2996270_-\|glutaredoxin-3	gnl\|CDD\|274017	TIGR02181, GRX_bact, Glutaredoxin, GrxC family. Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides. [Energy metabolism, Electron transport].	5.38818e-46
NZ_CP013107.1\|WP_064253835.1\|2982143_2984750_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP013107.1\|WP_064253833.1\|2986111_2987008_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	3.8907e-111
NZ_CP013107.1\|WP_064253832.1\|2987015_2988098_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP013107.1\|WP_037387899.1\|2969242_2969932_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	9.3881e-54
NZ_CP013107.1\|WP_064253828.1\|2994613_2995042_-\|DUF1178-family-protein	gnl\|CDD\|227630	COG5319, COG5319, Uncharacterized protein conserved in bacteria [Function unknown].	9.41914e-79
NZ_CP013107.1\|WP_064253829.1\|2993847_2994594_+\|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.83321e-151
NZ_CP013107.1\|WP_064255269.1\|2970104_2973371_-\|PAS-domain-S-box-protein	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	1.27833e-115
NZ_CP013107.1\|WP_064253826.1\|2997125_2998025_+\|hypothetical-protein	gnl\|CDD\|273953	TIGR02072, Malonyl-_O-methyltransferase, malonyl-acyl carrier protein O-methyltransferase BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, carries out an enzymatic step prior to the formation of pimeloyl-CoA, namely O-methylation of the malonyl group preferentially while on acyl carrier protein. The enzyme is recognizable as a methyltransferase by homology. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	1.05498e-17
NZ_CP013107.1\|WP_064253834.1\|2985156_2985795_-\|DUF4167-domain-containing-protein	gnl\|CDD\|372713	pfam13763, DUF4167, Domain of unknown function (DUF4167).	1.1779e-33
NZ_CP013107.1\|WP_064253837.1\|2996290_2997022_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	2.00115e-76
NZ_CP013107.1\|WP_064255271.1\|2967042_2967705_-\|purine-binding-chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	5.14005e-26

>NZ_CP013107.1|WP_064253832.1|2987015_2988098_-|peptide-chain-release-factor-1
MAKLPVEKMRELERRFAEIEARMSAGPAADVYVKLASEYSELQPVVTKIRAYEKACAELADIEAMLADRATDKEMRDLAEMEKPEVEERIEALEEEIQILLLPKDAADEKSAILEIRAGTGGSEAALFAGDLFRMYERYAAGKGWRVEVLSASEGEAGGYKEIIATVSGRGVFSRLKFESGVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDIRPEDIRIDTMRSSGAGGQHVNTTDSAVRITHLPTGIVVTSSEKSQHQNRAKAMQVLRSRLFDMERQRADSERSADRKSQVGSGDRSERIRTYNFPQGRLTDHRINLTLYKLDRMMEGEIDEVVDALLADHQASQLALLGERQN
>NZ_CP013107.1|WP_064253833.1|2986111_2987008_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MPETLDRLLSESRDRLKAAGIENAAGDARHLISGLLGLSLAGLMARGGEPVGPEDATRIRAAIDRRVAREPVYRILGEREFHGLTLTLSKETLEPRPDTETLVDGLIPRVRRIAAGKGHCRLIDLGTGTGAICLALLAGVLEARGTGTDISEDALATARENAKRNGLAERFQTLKSDWFEAVEGRFDVIVSNPPYIRSTVIGELEPEVRYHDPAAALDGGIDGLDAYRAIARHAGRHLEADGVVGLEIGFDQKQAVTALFQARGFRLLESRKDLGGNDRVLIFGQDVKGSTTVEKMLH
>NZ_CP013107.1|WP_064253834.1|2985156_2985795_-|DUF4167-domain-containing-protein
MRPGQQNKRGRGRNNNNGSNNNNNNRKGSNPLTRTYDSSGPDVKIRGTAQHIAEKYSALARDAQSSGDRVMAENYLQHAEHYNRIIAAAQAQMQDRFQREERQDYQERDLDRDQDDLDQVYAEPAPAAAAPAQAPTPSEPQPVIDGSGPQPVIEGMPAEVAMDEETSAASGRSASRRRSASRPRRQPRRNGGDEPAAEGQPAGDAPALAASE
>NZ_CP013107.1|WP_064253835.1|2982143_2984750_-|ATP-dependent-chaperone-ClpB
MNIEKYSERVRGFLQSAQTHALAEGHQQFTPEHVLKVLLDDDQGMAASLIERAGGDVREARAGTAAALAKLPKVTGGSGSVYLSQPLAKVFTAAEEAAKKAGDSFVTVERLLLALAIESSAATASILSKAGVTPTKLNQVINEIRKGRTADSANAEQGFDSLKKYARDLTEEARDGKLDPVIGRDDEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIAEGLALRIVNGDVPESLKDKRLMALDMGALIAGAKYRGEFEERLKAVLNEVRSEEGEIILFIDEMHTLVGAGKADGAMDASNLLKPALARGELHCVGATTLDEYRKHVEKDAALARRFQPVFVEEPTVEDTISILRGLKEKYEQHHKVRISDSALVAAATLSNRYITDRFLPDKAIDLMDEAASRLRMQVDSKPEELDELDRRVIQLKIEREALKKETDASSKDRLEKLELDLAALEEQAATLTARWQAEKQKLGRAADLKKQLDEARNELQIVQRKGEFQRAGELAYGVIPNLEKELAEAESQDGSSANPMVQEVVTPDNIAHIVSRWTGIPVDKMLEGEREKLLRMEDELAKWVVGQGDAVQAVSRAVRRARAGLQDPNRPIGSFIFLGPTGVGKTELTKALARFLFDDETALMRIDMSEYMEKHSVARLIGAPPGYVGYEEGGALTESVRRRPYQVVLFDEIEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFKNTMIIMTSNLGAEYLTGLGENEDSDAVRDQVMEVVRAAFRPEFLNRVDEIILFHRLRRSEMGAIVDIQLERLRKLLGERKITLELEEEARAFLADKGYDPAYGARPLKRAIQKYLQDPLAEKMLQGEFPDGSAIKIVAGSDRLNFKRGTAAAKEAA
>NZ_CP013107.1|WP_064253836.1|2980115_2982068_+|M23-family-metallopeptidase
MISNRNMLRSLGDQPPILADGRRAPDRREISMRWLSGTFLTGITSSLLMGVALFAALDGRQQLAIPAEAFAAVDPAAPGAAPISAAKRGNRILSPNIVAKPADKTVMEVSTMIHDGEKEVVRRQPFVHVKMALAANHQASEDYPAFDPLAIFSTDEAEVEPPAKTGTIYGSDVESEVALKTVNFPLKGSGFSFAPSMSLDEVEENVRTNGSVLTEGNTQVASLFYVDPQRFASDADNLDLIQGLSARIVEENMTVSTHETITEQSTEYADDVIPVRRAAPIATVLVNAGYAKAQADDAAGYIETALGAKELGAGDVLRIGIIQKGEEARIVRATVYSRNRHVLTMAVDDHGRFVPGAEPPKLDAVATAFDDTGTPVITSGHDLPRVYDGIYRAALSYGMNAEMISLIVKLLASNVDFQAQLKPTDSLEAFFSVTDESGQATEESELLYVDAKFGDAETRFYRFQDPDDNSIDYFDEAGKSIRQFLLRNPVPNGHFRSGFGMRRHPILGFSRMHTGVDWSAPRGTPIIAAGNGVVEKAGWDSGGYGNQTLVRHANGYVSSYNHQSAIAKNVKPGAKVVQGQVIGWVGTTGLSTGPHLHYELIVNGNKVDPLRIRLPGGKSLSGEMLAKFEKERERIDELLGKDDPSEVASQ
>NZ_CP013107.1|WP_064255269.1|2970104_2973371_-|PAS-domain-S-box-protein
MNAPPERSSKKSHDFFQCLMDGIAEPVIVKDDRSRFIYVNSAGCEILGRRCDELLGRTDHDILPKEKAERIISIDRAVLSTGEEHHVEAQITTADGATGTFLIKNRCVRIPAGLTEERFLVAVIVDVTKLREAEEALRAREDHYRSLIDLHPQVPWTAGPTGAVLDVGPRWTEFTGLSEKETLGSGWAKAVHPHDAAMVRQQWQSSLSGGDPLNVEYRLLTATGRYRWVRARAVAKHAATGEIARWYGVLEDVDERRRATEALRESEARFRAIADDAPVMIWVADPSGDTSFFSRLWLETTGQTEAEALGFGWVDVIHPDDRDKVQEAFFSATSGKAPVRSEYRLRRADGSWAWVIDVGQPRFSDDGTFLGYVGSVLDITERRAAELAQQESQAFIRSIFDSSPDCVRVLDLEGRPLLMNKAGRRIFGLADAAPLTRTTWDVIGKESDAKKVREGWAKVRVGETARFEITIRDAEGKERCMDVIAAPIIGREGNPARMLSIWRDITDAKRASDEIARAQRTAEAAADQLSSVLESTMDSVMLLDPQWRIRYLNENARRLLRIGDESLGKVFWKQFPKEKRGNFAKHCQEVMDRRVRSFFEDYLPSLDRWIEANASPTQDGISIFCRDITEHRRAEEDKLLAQKQMAHLARHDMLTGLANRMFFRECFERALSEKGAAGRMAVLCLDLDGFKAINDTLGHPAGDALLRQVSARLVQSVRPIDVVARLGGDEFAIIRPLATSFNEAVRLAQRIIDTLCEPFTIEGVSATIGASIGIAFAPDDGSSADELIKAADIALYNAKSSGRGTYKRFDVAMHAQLQAHQQVKIALRGALERNEFELHYQPLVSLSSRRVTGCEALLRWRNPERGMVAPSEFIPIAEETGLIVPIGEWILNQACRQAAQWPEHVSIAINLSPVQFKHRNLVKAVADALSASRLTPARLQLEITESVLLDESEHNLQLLQELRSLGVKIAMDDFGTGYSSLGYLRTFPFDKIKVDQAFVRDLPHGRESLAIVKAVAGLGHSLGMTTTIEGIETEDQLAIVNAEGFHEVQGYIFSRPLPASEVSKLIDGPLEKGGASPVYERFANSPEW
>NZ_CP013107.1|WP_037387899.1|2969242_2969932_-|response-regulator-transcription-factor
MNTSRVALIADDDEFFRIALGFILKSKLHFTGIIETGSLDEAIERLSEHEDISLALFDLAMPGMQSAASLAAVRDVHPDLKVAVVSASSRRSDILSALTAGINGYVPKGLGASELAEAIGSILNGAVYVPPSIAGRPAPPEEVELPQVTRGNQDARSHRTIEFLTPRQREVLLLLVEGFSNKEIARKLKLGEGTVKIHMAALFRSLRVRNRQEAAAAGARLLPMTGSPH
>NZ_CP013107.1|WP_064255270.1|2967701_2969063_-|protein-glutamate-O-methyltransferase-CheR
MTGHALPSKLADEVACRVGLSVPASRKGSVASAIARIMARRGIDDSSLLLLRLGLDQDLADDVIAAVTVGETHFFRDPEQFQLIRQEILPELTRRTDGGPTRIWSVGCATGEEPYSLAILCDEEGLSEEVRICAVDISRRALGTARAAEYGEWSLRNTDSKLKERYFTACEDRFRLNDRLRRQVDFAVLNLGEADLPAPERGLADFGLILCRNVLVYLDASKVRRIARQLFACLADGGWLLTAPTDPPLWKYAPFETGITPAGVVYRRMIVHRGVRKSPTSGIVSAQGQPKKPVTRTAAAQACVTDAQKAPGDQASRAIARNIRARYDMGETREAACLAAQAIESHPLSAELHFLQGLSQLADGETDAAAAALRRVVYLDSTLSAAQFFLGICLQHSDPEASLRALENVLQSCLSRPPQERVSLMANATAGDLVERARREIGKIRRPLGSGSR
>NZ_CP013107.1|WP_064255271.1|2967042_2967705_-|purine-binding-chemotaxis-protein-CheW
MTMLSRPAAHPVDWIAVRRRMEAAIEQTEALLETAQKAAQYEQSPLSTGDAFAGPSDEQTVGLVTFMLSDRRFALEIRFVCEIVSKARVSPLPVMPSHACGVYDLRGELLPAFDLSRLFDLPRSAGSASDWAIVCGQAHSEFLILSDSVPEIVALPLEEFAAAERGKGDGSFDCATTDAGIVLLDGHLLLNDRRFFLEDEQMIATGETERTEIHEPAIDE
>NZ_CP013107.1|WP_064255272.1|2965439_2967065_-|methyl-accepting-chemotaxis-protein
MSPRLTNSLYGTLGLAMLLFAAASALLVGSSSVALQRVRADLAATSSLGKQRLAYQLIYVASRLERAEGPARIAAADELRGLVERNERLLASLADGDERFGLEAMTDPAALAQLEQTRQQWREQVRPALESTIAGGPLGPAALDELDPRIRDFAAGMDELINRIEQAGVARLQRSQLLQLGFAVLAVLMLLHVLRVARRLVRRTRALAGQAERVSAGDLTQKAAVEGSDELAVLGFSFNAMTGRLAGMIDSERSSRERLEELLATISDTAQHLSSSAAEILAGTTQQVEGMREQSSAVAQTVTSVDEVLQTSEQAAQRAQQVAGSYDQAVRISNDGRRALDDTVHVMKAVSARTEAIAGDILSLAENSLEIGEIVTVVAEIADQTNLLALNAAIEASRAGEHGRGFSVVASEIRTLADQSKSATTRVRRILMEIQKATNAAVIGAEDGTKSVSRALETVNEAGETIRQLEAIVADSARSVAQIAASAGQQRAGMKQIHDAMHYIEQASSQNLSAIRQAEEAAKDLNELGSRLKEMLADHGS
>NZ_CP013107.1|WP_064253830.1|2990528_2991803_-|aspartate-kinase
MARIVMKFGGTSVADLNRIHNVARHVKREVDAGHEIAVVVSAMSGKTNELVGWVENMPKVAGSNAPFYDAREYDAVVASGEQVTSGLLAIALQSMGINARSWQGWQLPIKTDNAHGAARILDIDGADIVRRMGEGQVAVVAGFQGLGPDNRLATLGRGGSDTSAVAIAAAVKADRCDIYTDVDGVYTTDPRIEPKARRLKKVAFEEMLEMASLGAKVLQVRSVELAMVHKVRTFVRSSFEDPDAPGMGDLLNPPGTLICDEDEIVEQEVVTGIAYAKDEAQISLRRLADRPGVSAAIFGPLAEAHINVDMIVQNISEDGSKTDMTFTVPSGDVNKALKVLSDNKEKIGYDVVQSESGLVKVSVIGIGMRSHAGVAASAFRALAEKGINIKAITTSEIKISILIDGPYAELAVRTLHSAYGLDKS
>NZ_CP013107.1|WP_037388487.1|2993179_2993725_+|dihydrofolate-reductase
MRKVIMWDMVSVDGFFEAPGHDIDWFVFEDELAAYIGETQMEAGTLLFGRVTYEMMAAYWPSAEGDIATFMNGAEKFVFSKTLQSADWNNTTLISADAVAEVERLKQRAGGTIFVFGSADFAATLTARGLVDEYRLGINPVLLGKGTPLFQNIPERTKLDLTHIRPLKSGVVILHYQPARA
>NZ_CP013107.1|WP_064253829.1|2993847_2994594_+|bifunctional-2-polyprenyl-6-hydroxyphenol-methylase/3-demethylubiquinol-3-O-methyltransferase-UbiG
MSETARTTIDQSEVDRFSAMAAEWWDPTGKFRPLHKFNPVRLAYIRDRVCEQFGRDPKSPQPLKGLRLLDIGCGGGLLSEPMARMGADVLGADASEKNIGIAKAHAAGSGVNVDYRAMTAEALAEAGESFDIVLNMEVVEHVADVDFFVTTCAHMVRPGGLMFVATINRTLKAAALAIFAAENVLRWLPRGTHQYEKLVRPEELEKPIEASGMEVVDRTGVFFNPLANQWNLSKDMDVNYMIVAKRPV
>NZ_CP013107.1|WP_064253828.1|2994613_2995042_-|DUF1178-family-protein
MICYNLSCDNGHGFEGWFSSSGDFERQANAHLVTCPTCGSGSVSKQLMAPTVSTARKKEARQALVMDQAQKETIAKLREMVKTIRANAEDVGERFPEEARKIHYGEADQRGLIGKATAEEASALLEEGIEITPLPVLPDDTN
>NZ_CP013107.1|WP_064253827.1|2995038_2995896_-|carbon-nitrogen-hydrolase-family-protein
MSFKTAAVQMCSGVDPARNVETMVSLVREAASEGAVYIQTPEMTGAIQRDRTGLRSVLKEEAGDLVVREAARLAGELGVYLHVGSTPIALPDGKVANRGFLFGPDGKKICDYDKIHMFDVDLDNGESWRESAVYRPGATARMVDLPFGKLGFAICYDVRFPELFRQQAVAGAEIMSVPAAFTRQTGEAHWEILLRARAIENGLFVIAAAQAGQHEDGRETFGHSMIVDPWGKVLAKAGPAGEAVLIAEIDVAAVSGARARIPNLKNARDFVLDQVVPAGKGGVAA
>NZ_CP013107.1|WP_173827777.1|2995985_2996270_-|glutaredoxin-3
MPAKEQFEIMASVVIYTRQFCGYCTRAKNLLESKGVDFVEHDATYDPALRQTMIERSNGGRTFPQIFINDVPVGGCDDLHALDRAGKLDEMLAA
>NZ_CP013107.1|WP_064253837.1|2996290_2997022_-|ComF-family-protein
MFGAFGAAAVNLVFPPVCCGCGRLTGDAHAVCPSCWAGLRLIDRPYCEILGSPFAFDPGPGAVSPQAIANPPAFDRLRSVSLYEGIARDLVHGLKYRDRTDLARMMAEWMIRASDGSVAAADMIVPVPLHAFRLWRRKFNQSAELARCVSERAGKPYRPDVLRRIRRTRRQVGLGARAREENVRGAFAVPESARSGLAGKRIVLVDDVYTTGATVSAATRALRRAGAADVTVLTFAMAMSEPI
>NZ_CP013107.1|WP_064253826.1|2997125_2998025_+|hypothetical-protein
MEIVFDQSLVEAHRRKALHRADPKATFLLDIVAQELADRVSVVDRFFDRAMELHGYTGATATRLAETGKVGTIERVETDEGFGSPQAPVTVAPLERIPAEAQTLNLLVSPLSLHLTNDTPGVFIQARRALKPDGLFLAAIPGSGTLQELRECLLAAEAELTSGASPRVIPFADVRDMGGLLQRAGFALPVADTETYTVRYDSLLGLLKDLRAMGMTNPLKSRSRRPMPRRFFLRAAEIYAERFSDPDGRVRATFSIIYVSGWAPHESQQKPLKPGSAKQRLSDALGASEHALKGSGKQS
>NZ_CP013107.1|WP_037388497.1|2998071_2998245_-|Flp-family-type-IVb-pilin
MDKLRYLVRNRDGATVVEYGLVAALISVALLIGLQNFSNELLNVLNLIAGAIEGSWT
>NZ_CP013107.1|WP_037388500.1|2998353_2998674_-|hypothetical-protein
MVDEDFWRTVQDKDLVASQSRRTGVLNLSLLFGTAVIALTLILTPMLSSKGDKRMLANTPIDYDNISTGSIPSGGTAKRYTVRRSVLQEMPGAVCIIDANGSRSGC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1662825 : 1677014

uncultured_Mediterranean_phage(81.82%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161951919.1\|1662825_1663689_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.0e-32	34.9
WP_064253582.1\|1663681_1664407_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	5.2e-41	43.4
WP_037384522.1\|1664478_1665588_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	8.6e-11	33.7
WP_018239649.1\|1665679_1665886_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.8e-08	69.8
WP_064253583.1\|1665956_1666670_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_037384517.1\|1666666_1667509_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.0e-43	41.4
WP_064253584.1\|1667552_1668836_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.2e-103	47.4
WP_064253585.1\|1668862_1669633_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.2e-21	30.0
WP_072642806.1\|1669629_1670283_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.1e-16	34.6
WP_037384506.1\|1670507_1671158_+	hypothetical protein	NA	NA	NA	NA
WP_064253586.1\|1671321_1672857_+	LysM peptidoglycan-binding domain-containing protein	Q8SBN9	Clostridium_phage	2.1e-15	35.7
WP_064253587.1\|1672884_1673760_-	ATP-binding protein	NA	NA	NA	NA
WP_037384499.1\|1674074_1674407_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.9e-10	36.5
WP_064253588.1\|1674455_1677014_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	4.2e-53	43.7

DBSCAN-SWA_2

1828454 : 1851683

Sinorhizobium_phage(57.14%)

head,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064253683.1\|1828454_1829093_+	hypothetical protein	F1C5D5	Cronobacter_phage	1.0e-56	52.7
WP_064253684.1\|1829115_1829580_+	DUF2280 domain-containing protein	A0A1B0VMH2	Pseudomonas_phage	3.6e-35	64.5
WP_064253685.1\|1829566_1830955_+\|terminase	phage terminase large subunit	D4N436	Pseudomonas_phage	8.4e-88	39.0
WP_064253687.1\|1831374_1833204_+	DUF1073 domain-containing protein	A0A2H4J4I9	uncultured_Caudovirales_phage	7.2e-172	52.2
WP_064253688.1\|1833269_1833479_-	hypothetical protein	NA	NA	NA	NA
WP_064253731.1\|1833642_1833936_-	hypothetical protein	NA	NA	NA	NA
WP_064253689.1\|1834072_1835218_+	DUF2213 domain-containing protein	A0A2R3UA67	Siphoviridae_environmental_samples	4.1e-80	48.3
WP_064253690.1\|1835217_1835655_+	DUF2190 family protein	L7TJK9	Rhizobium_phage	9.2e-17	41.3
WP_064253691.1\|1835669_1836623_+	DUF2184 domain-containing protein	L7TMZ5	Rhizobium_phage	1.5e-72	50.2
WP_064253732.1\|1836635_1837091_+	hypothetical protein	NA	NA	NA	NA
WP_064253692.1\|1837141_1837636_+	hypothetical protein	A0A2R3UAR2	Siphoviridae_environmental_samples	2.2e-19	42.9
WP_064253693.1\|1837635_1838001_+	hypothetical protein	A0A076G8G5	Sinorhizobium_phage	4.6e-38	65.8
WP_162843169.1\|1838284_1838455_+	hypothetical protein	A0A076GD18	Sinorhizobium_phage	2.0e-07	59.3
WP_064253695.1\|1838454_1839507_+\|head	head morphogenesis protein	A0A076G6I6	Sinorhizobium_phage	2.2e-157	84.9
WP_064253696.1\|1839506_1839968_+	hypothetical protein	A0A076G8G8	Sinorhizobium_phage	4.3e-57	76.2
WP_072642809.1\|1839936_1840140_-	hypothetical protein	NA	NA	NA	NA
WP_064253697.1\|1840157_1840589_+	hypothetical protein	A0A076G7G6	Sinorhizobium_phage	8.1e-66	83.2
WP_064253698.1\|1840646_1841378_+	hypothetical protein	A0A076GD25	Sinorhizobium_phage	1.7e-108	80.7
WP_064253699.1\|1841386_1841800_+	hypothetical protein	A0A076G701	Sinorhizobium_phage	4.6e-58	87.3
WP_153045231.1\|1842153_1842375_-	hypothetical protein	NA	NA	NA	NA
WP_064253701.1\|1842411_1845225_+\|tail	phage tail length tape measure family protein	A0A076G7H2	Sinorhizobium_phage	0.0e+00	70.9
WP_064253702.1\|1845227_1845962_+	hypothetical protein	A0A076GD29	Sinorhizobium_phage	2.1e-98	69.2
WP_064253703.1\|1845961_1846561_+	hypothetical protein	A0A076G707	Sinorhizobium_phage	3.6e-80	70.9
WP_064253704.1\|1846568_1846976_+	hypothetical protein	A0A076G6J4	Sinorhizobium_phage	2.7e-34	55.3
WP_064253705.1\|1846957_1849546_+	hypothetical protein	A0A076G8H4	Sinorhizobium_phage	2.2e-230	61.6
WP_064253706.1\|1849598_1851683_+	hypothetical protein	K7XYL3	uncultured_Mediterranean_phage	9.5e-19	45.7

DBSCAN-SWA_3

1974675 : 1983405

Klosneuvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064251812.1\|1974675_1976226_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.6e-103	39.0
WP_064251811.1\|1976400_1976706_+	pyrophosphatase	NA	NA	NA	NA
WP_037385914.1\|1976700_1977732_-	DNA polymerase III subunit delta'	S5WKH4	Pseudomonas_phage	8.0e-11	28.7
WP_037386031.1\|1977728_1978430_-	dTMP kinase	M1PSC7	Streptococcus_phage	1.3e-36	39.5
WP_064251810.1\|1978486_1979641_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	9.2e-48	34.0
WP_064251809.1\|1979720_1980743_-	septal ring lytic transglycosylase RlpA family protein	F5B3X9	Synechococcus_phage	3.3e-17	51.1
WP_064251808.1\|1981307_1981907_+	hypothetical protein	NA	NA	NA	NA
WP_064251807.1\|1982099_1982414_-	DUF1476 domain-containing protein	NA	NA	NA	NA
WP_018239850.1\|1982640_1983405_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	1.1e-44	43.5

DBSCAN-SWA_4

2245687 : 2260566

Sulfitobacter_phage(54.55%)

transposase,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064251569.1\|2245687_2247388_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.1e-87	41.6
WP_018237844.1\|2247368_2247602_-	hypothetical protein	NA	NA	NA	NA
WP_064251910.1\|2248867_2250217_-\|tail	tail fiber domain-containing protein	M4NM77	Sulfitobacter_phage	2.3e-42	32.7
WP_064251911.1\|2250224_2250671_-	GNAT family N-acetyltransferase	X2CY06	Brucella_phage	2.3e-39	54.3
WP_037386685.1\|2250667_2252278_-	hypothetical protein	F8TUS4	EBPR_podovirus	3.0e-81	39.7
WP_037386519.1\|2252277_2252880_-	hypothetical protein	A0A088FAT4	Sulfitobacter_phage	5.2e-18	34.4
WP_064251912.1\|2252876_2253473_-	hypothetical protein	A0A088F6W5	Sulfitobacter_phage	4.9e-21	37.6
WP_037386522.1\|2253469_2253793_-	hypothetical protein	F8TUS1	EBPR_podovirus	6.3e-23	48.6
WP_162843157.1\|2253789_2253966_-	hypothetical protein	NA	NA	NA	NA
WP_037386524.1\|2254032_2255028_-	DUF5309 domain-containing protein	A0A088FAT7	Sulfitobacter_phage	6.3e-130	71.3
WP_064251957.1\|2255188_2256139_-	hypothetical protein	A0A088F6W8	Sulfitobacter_phage	4.5e-32	35.9
WP_037386528.1\|2256300_2256537_-	hypothetical protein	NA	NA	NA	NA
WP_064251913.1\|2257081_2259136_-	hypothetical protein	A0A088F830	Sulfitobacter_phage	1.8e-195	57.5
WP_037386533.1\|2259135_2260566_-\|terminase	terminase large subunit	C8CLI4	Xylella_phage	6.9e-170	65.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP013108

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

5352 : 52634

Stx2-converting_phage(28.57%)

integrase,transposase

attL 43200:43215|attR 54058:54073

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072642841.1\|5352_6528_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_064253140.1\|6750_7137_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_037381694.1\|7136_7391_-	type II toxin-antitoxin system VapB family antitoxin	NA	NA	NA	NA
WP_064253141.1\|8059_8638_+	hypothetical protein	NA	NA	NA	NA
WP_082912299.1\|8891_10466_+	N-6 DNA methylase	M1HXF7	Paramecium_bursaria_Chlorella_virus	3.5e-05	24.9
WP_064253143.1\|10465_13231_+	hypothetical protein	NA	NA	NA	NA
WP_064253144.1\|13227_17562_+	helicase	NA	NA	NA	NA
WP_072642842.1\|19074_20667_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	7.6e-77	35.4
WP_010003750.1\|20741_21086_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_010003750.1\|21778_22123_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_064251582.1\|23417_24623_-	hypothetical protein	NA	NA	NA	NA
WP_064251581.1\|25282_26881_-	hypothetical protein	NA	NA	NA	NA
WP_064251580.1\|27787_28423_+	DUF1326 domain-containing protein	NA	NA	NA	NA
WP_064506639.1\|29108_29282_+	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_072642845.1\|29445_30780_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_064253740.1\|31146_31347_+	DUF3606 domain-containing protein	NA	NA	NA	NA
WP_072642846.1\|31608_33186_-	calcium-binding protein	NA	NA	NA	NA
WP_064254096.1\|33389_33656_-	hypothetical protein	NA	NA	NA	NA
WP_064254095.1\|34062_34680_+	hypothetical protein	NA	NA	NA	NA
WP_064254099.1\|35264_35726_+\|transposase	transposase	NA	NA	NA	NA
WP_064254094.1\|35981_36593_+	hypothetical protein	NA	NA	NA	NA
WP_064254093.1\|36729_36969_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_064254092.1\|37332_37806_+	ProQ/FinO family protein	NA	NA	NA	NA
WP_072642847.1\|37955_38147_-	hypothetical protein	A0A291AUP5	Sinorhizobium_phage	3.2e-14	63.5
WP_072642848.1\|38139_38643_-	hypothetical protein	NA	NA	NA	NA
WP_064254090.1\|38778_39750_+	hypothetical protein	A0A076GD42	Sinorhizobium_phage	5.4e-126	70.6
WP_064254089.1\|40149_40440_-	hypothetical protein	NA	NA	NA	NA
WP_064254088.1\|40547_40739_-	hypothetical protein	NA	NA	NA	NA
WP_064254087.1\|40796_41267_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	1.3e-16	45.4
WP_064254098.1\|41521_41773_-	WGR domain-containing protein	NA	NA	NA	NA
WP_064254086.1\|42114_42591_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_064254085.1\|42836_43223_-	hypothetical protein	NA	NA	NA	NA
43200:43215	attL	NA	NA	NA	NA
WP_072642849.1\|43226_43421_-	hypothetical protein	NA	NA	NA	NA
WP_064254084.1\|45065_45467_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_064254083.1\|45470_48284_+	hypothetical protein	NA	NA	NA	NA
WP_037382735.1\|48290_48500_+	hypothetical protein	NA	NA	NA	NA
WP_064254082.1\|48703_49042_+\|integrase	phage integrase N-terminal SAM-like domain-containing protein	NA	NA	NA	NA
WP_153045252.1\|49090_49843_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.2e-27	58.0
WP_064254080.1\|51498_51921_-	hypothetical protein	NA	NA	NA	NA
WP_083572137.1\|51998_52634_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	1.7e-24	38.5
54058:54073	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP013110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

134903 : 181129

Ralstonia_phage(100.0%)

transposase,plate,integrase

attL 123834:123849|attR 154011:154026

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
123834:123849	attL	NA	NA	NA	NA
WP_064251562.1\|134903_136025_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_037381770.1\|136447_136846_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_037381768.1\|136842_137094_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_156911512.1\|137262_137427_+	hypothetical protein	NA	NA	NA	NA
WP_037381763.1\|138493_138925_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_064254075.1\|138921_139404_+	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_072642894.1\|139432_140587_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_037381755.1\|140583_140919_-	hypothetical protein	NA	NA	NA	NA
WP_037381753.1\|140921_141299_-	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_037381752.1\|141295_141586_-	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_153045251.1\|142296_142845_+	hypothetical protein	NA	NA	NA	NA
WP_064254072.1\|145916_147350_-	hypothetical protein	NA	NA	NA	NA
WP_082912445.1\|147729_148890_-	hypothetical protein	NA	NA	NA	NA
WP_064254079.1\|149825_150671_-	type IV toxin-antitoxin system AbiEi family antitoxin	NA	NA	NA	NA
WP_161951931.1\|151306_152491_+	DUF4297 domain-containing protein	NA	NA	NA	NA
WP_082912443.1\|152487_153048_+	hypothetical protein	NA	NA	NA	NA
WP_064254070.1\|153139_154954_+	hypothetical protein	NA	NA	NA	NA
154011:154026	attR	NA	NA	NA	NA
WP_064254069.1\|156342_158604_+	glycosyl transferase	NA	NA	NA	NA
WP_064254068.1\|158554_159079_-	hypothetical protein	NA	NA	NA	NA
WP_064254067.1\|159118_161257_-	caspase family protein	NA	NA	NA	NA
WP_064254066.1\|161645_163952_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	5.5e-44	26.6
WP_026186894.1\|163965_164391_+	hypothetical protein	NA	NA	NA	NA
WP_064254065.1\|164390_164738_+	hypothetical protein	NA	NA	NA	NA
WP_064254077.1\|164746_165706_-	hypothetical protein	NA	NA	NA	NA
WP_037382670.1\|165919_166894_-	DUF4150 domain-containing protein	NA	NA	NA	NA
WP_064254064.1\|166899_167931_-	3-oxoacyl-ACP synthase	NA	NA	NA	NA
WP_064254063.1\|167927_169028_-	DUF2169 domain-containing protein	NA	NA	NA	NA
WP_064254062.1\|169027_169573_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
WP_064254061.1\|169554_173082_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_064254060.1\|173083_174403_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_064254059.1\|174407_175742_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_037382678.1\|175758_176217_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_064254058.1\|176216_177464_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_064254057.1\|177457_178525_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_037382683.1\|178488_180363_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_037382685.1\|180364_181129_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013109

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP013107

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP013108

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP013110

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection