CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016021	Bacillus weihaiensis strain Alg07 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP016020	Bacillus weihaiensis strain Alg07 chromosome, complete genome	0 crisprs	DEDDh,RT,cas3,DinG,csa3,cas9	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3672 : 13736

Bacillus_phage(28.57%)

integrase

attL 1988:2001|attR 4876:4889

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1988:2001	attL	NA	NA	NA	NA
WP_072581982.1\|3672_4536_-\|integrase	tyrosine-type recombinase/integrase	A0A1P8DJP1	Virus_Rctr41k	1.1e-08	29.4
WP_158515123.1\|4577_4730_-	hypothetical protein	NA	NA	NA	NA
WP_072581983.1\|4760_5168_-	hypothetical protein	NA	NA	NA	NA
4876:4889	attR	NA	NA	NA	NA
WP_072581984.1\|5716_6289_+	DUF3967 domain-containing protein	NA	NA	NA	NA
WP_083584526.1\|6527_6758_+	helix-turn-helix domain-containing protein	A0A1B0T6C2	Bacillus_phage	3.2e-05	46.9
WP_083584525.1\|6956_7550_-	type II toxin-antitoxin system PemK/MazF family toxin	U5U4R0	Staphylococcus_phage	6.9e-07	43.7
WP_072581985.1\|7882_8560_-	hypothetical protein	Q0H249	Geobacillus_phage	5.5e-69	60.5
WP_072581986.1\|8540_9713_-	AAA family ATPase	Q0H250	Geobacillus_phage	1.9e-80	42.6
WP_145925833.1\|9724_10057_-	hypothetical protein	NA	NA	NA	NA
WP_072581988.1\|10421_10646_+	helix-turn-helix transcriptional regulator	A0A0S2GLH4	Bacillus_phage	4.6e-12	43.1
WP_158515124.1\|10870_11026_+	hypothetical protein	NA	NA	NA	NA
WP_072581999.1\|11109_11538_-	DUF559 domain-containing protein	NA	NA	NA	NA
WP_072581989.1\|11621_13736_-	hypothetical protein	A0A2H4JAI2	uncultured_Caudovirales_phage	1.7e-31	60.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP016020

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1525851 : 1532758

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072579333.1\|1525851_1526286_+	peptidylprolyl isomerase	A0A2H4UTF4	Bodo_saltans_virus	3.1e-17	46.0
WP_072579334.1\|1526830_1527478_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	8.0e-41	44.7
WP_072579335.1\|1527515_1528709_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.3e-110	50.5
WP_072579336.1\|1528765_1529233_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-44	61.7
WP_072579337.1\|1529374_1529743_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_072581788.1\|1530050_1530572_-	DUF309 domain-containing protein	NA	NA	NA	NA
WP_072579338.1\|1531009_1531105_-	YjcZ family sporulation protein	NA	NA	NA	NA
WP_099092745.1\|1531410_1532157_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.2e-08	25.4
WP_072579340.1\|1532161_1532758_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.8e-15	33.5

DBSCAN-SWA_2

2174513 : 2182633

Bacillus_virus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072579905.1\|2174513_2175935_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	1.6e-17	29.0
WP_072579906.1\|2176296_2177661_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_072579907.1\|2178010_2178730_+	3-ketoacyl-ACP reductase	W8CYX9	Bacillus_phage	1.5e-48	79.7
WP_072579908.1\|2178901_2179681_+	NUDIX hydrolase	G3MA14	Bacillus_virus	9.6e-33	39.4
WP_072579909.1\|2179703_2180252_+	cysteine hydrolase	G3MA16	Bacillus_virus	1.3e-28	42.5
WP_072579910.1\|2180319_2181813_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	1.1e-114	47.7
WP_072579911.1\|2181814_2182633_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	5.8e-97	66.3

DBSCAN-SWA_3

3055448 : 3091552

Bacillus_phage(28.57%)

portal,integrase,holin,coat

attL 3051868:3051916|attR 3067921:3067969

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3051868:3051916	attL	NA	NA	NA	NA
WP_083584504.1\|3055448_3056696_-\|portal	phage portal protein	NA	NA	NA	NA
WP_072580644.1\|3056829_3058431_-	DNA packaging protein	A0A2I7RNR6	Vibrio_phage	6.6e-28	26.2
WP_072580645.1\|3058474_3058870_-	hypothetical protein	NA	NA	NA	NA
WP_072580646.1\|3058869_3059094_-	hypothetical protein	NA	NA	NA	NA
WP_072580647.1\|3059347_3060301_-	hypothetical protein	A0A0H3V0V6	Geobacillus_virus	4.9e-71	45.5
WP_072580648.1\|3060345_3060525_-	hypothetical protein	NA	NA	NA	NA
WP_145925802.1\|3060584_3061454_-	hypothetical protein	NA	NA	NA	NA
WP_072580650.1\|3061704_3061878_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_072580651.1\|3061946_3062819_-	DUF5309 domain-containing protein	NA	NA	NA	NA
WP_072580652.1\|3062898_3063315_-	hypothetical protein	NA	NA	NA	NA
WP_072580653.1\|3063398_3063617_-\|holin	holin	NA	NA	NA	NA
WP_072580654.1\|3064299_3065529_-	hypothetical protein	NA	NA	NA	NA
WP_072580655.1\|3066261_3066492_-	hypothetical protein	NA	NA	NA	NA
WP_072580656.1\|3066506_3066764_-	hypothetical protein	NA	NA	NA	NA
WP_072580657.1\|3066760_3066877_-	DNA-binding anti-repressor SinI	NA	NA	NA	NA
WP_072580658.1\|3066888_3067803_-\|integrase	tyrosine-type recombinase/integrase	A0A142F1N9	Bacillus_phage	5.4e-27	25.8
WP_072580659.1\|3068190_3070146_-	TRAP transporter permease	NA	NA	NA	NA
3067921:3067969	attR	NA	NA	NA	NA
WP_072580660.1\|3070135_3070645_-	DUF1850 domain-containing protein	NA	NA	NA	NA
WP_072580661.1\|3070707_3071715_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_072580662.1\|3071811_3072789_-	NERD domain-containing protein	NA	NA	NA	NA
WP_072580664.1\|3073068_3074229_-	cystathionine beta-lyase	NA	NA	NA	NA
WP_072580665.1\|3074215_3075340_-	methionine biosynthesis PLP-dependent protein	A0A0B5JD48	Pandoravirus	5.0e-14	25.9
WP_072580666.1\|3075831_3076404_-	SCO family protein	NA	NA	NA	NA
WP_072580667.1\|3076413_3077412_-	aliphatic sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_072580668.1\|3077430_3078186_-	ABC transporter permease	NA	NA	NA	NA
WP_072580669.1\|3078169_3078958_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.6e-30	36.5
WP_072580670.1\|3079353_3079635_-	hypothetical protein	NA	NA	NA	NA
WP_072580671.1\|3079805_3080534_+	esterase family protein	NA	NA	NA	NA
WP_072580672.1\|3080660_3081179_+	hypothetical protein	NA	NA	NA	NA
WP_072580673.1\|3081179_3081605_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_072580674.1\|3082019_3082700_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_072580675.1\|3082916_3083162_-	hypothetical protein	NA	NA	NA	NA
WP_072580676.1\|3083333_3085616_+	ATP-dependent helicase	S5M596	Bacillus_phage	2.1e-83	34.6
WP_072580677.1\|3085687_3085942_-	sporulation protein	NA	NA	NA	NA
WP_072580678.1\|3086167_3086293_-	YjcZ family sporulation protein	NA	NA	NA	NA
WP_072580679.1\|3086375_3086588_-	hypothetical protein	NA	NA	NA	NA
WP_072580680.1\|3086584_3087292_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_083584505.1\|3087538_3088324_+	vanadium-dependent haloperoxidase	A0A1V0SGK0	Hokovirus	4.5e-06	33.3
WP_072580682.1\|3088725_3089076_-	DUF1360 domain-containing protein	NA	NA	NA	NA
WP_072580683.1\|3089397_3089817_+\|coat	spore coat protein	NA	NA	NA	NA
WP_072580684.1\|3089865_3090150_+	hypothetical protein	NA	NA	NA	NA
WP_072580685.1\|3090244_3090733_+\|coat	spore coat protein	NA	NA	NA	NA
WP_072580686.1\|3091075_3091552_+\|coat	spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_4

3832333 : 3842791

Synechococcus_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072581291.1\|3832333_3833374_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FGG1	Synechococcus_phage	1.6e-67	43.8
WP_072581292.1\|3833434_3834850_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.9e-51	33.1
WP_072581293.1\|3834825_3837054_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.4e-163	40.5
WP_072581294.1\|3837037_3837721_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_072581295.1\|3837717_3837972_-	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	6.5e-07	37.3
WP_099092788.1\|3837959_3838691_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3FUQ7	Synechococcus_phage	7.6e-48	41.7
WP_072581296.1\|3838832_3840125_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	5.0e-18	25.8
WP_072581297.1\|3840140_3841268_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_072581298.1\|3841254_3841743_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.8e-22	44.6
WP_072581299.1\|3842038_3842239_-	NETI motif-containing protein	NA	NA	NA	NA
WP_072581300.1\|3842368_3842791_-	metallothiol transferase FosB	Q2LI91	Bacillus_phage	3.1e-38	65.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016021

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP016020

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection