CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013074	Dehalococcoides mccartyi strain CG3 chromosome, complete genome	1 crisprs	cas4,cas3,csa3,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	0	6	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013074_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013074_1

1448725-1449363

TypeI-E

I-B,III-A,III-B

Consensus_repeat	Method
GTATTCCCCACGCGTGTGGGGGTGAACC	PILER-CR
GTATTCCCCACGCGTGTGGGGGTGAACCG	CRISPRCasFinder
GTATTCCCCACGCGTGTGGGGGTGAACCG	CRT

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP013074_1

>merge|NZ_CP013074|1|1448725-1449363|PILER-CR,CRISPRCasFinder,CRT
GTATTCCCCACGCGTGTGGGGGTGAACCGTGATATATGCTAGGGTAGGTCTGTTAATGCCTGTATTCCCCACGCGTGTGGGGGTGAACCGTTATGTGTACTCAGGAAGAAATTGATGCCATTGTATTCCCCACGCGTGTGGGGGTGAACCGCGTGCGTGTCGGCAGTATAGATTTTGCTGTTAGTATTCCCCACGCGTGTGGGGGTGAACCGATTGTCTAGGGTCAAATCTCTAGCGTGTAATTGTATTCCCCACGCGTGTGGGGGTGAACCGGCATCAAGTTCCTCCTGAATTCTTAAAATACTGTATTCCCCACGCGTGTGGGGGTGAACCGATAACGCTCTCCATGTCGGGAACTACCGCAACGTATTCCCCACGCGTGTGGGGGTGAACCGGTTAGTAGGTGGTTTTTTACCACGAGTAAAGAAGTATTCCCCACGCGTGTGGGGGTGAACCGGCGTTCCCCCTTCGTTACTGACTTGGTACAAGTATTCCCCACGCGTGTGGGGGTGAACCGAGGATAGATAATCTAGATATAACGCCTAGTCAGTATTCCCCACGCGTGTGGGGGTGAACCGGTGTATTGTATAGTGCAGAACAAGACAACTAAGTATTCCCCACGCGTGTGGGGGTGAAACA

>NZ_CP013074|1|1|1448725-1449362|PILER-CR
GTATTCCCCACGCGTGTGGGGGTGAACC	GTGATATATGCTAGGGTAGGTCTGTTAATGCCT
GTATTCCCCACGCGTGTGGGGGTGAACC	GTTATGTGTACTCAGGAAGAAATTGATGCCATT
GTATTCCCCACGCGTGTGGGGGTGAACC	GCGTGCGTGTCGGCAGTATAGATTTTGCTGTTA
GTATTCCCCACGCGTGTGGGGGTGAACC	GATTGTCTAGGGTCAAATCTCTAGCGTGTAATT
GTATTCCCCACGCGTGTGGGGGTGAACC	GGCATCAAGTTCCTCCTGAATTCTTAAAATACT
GTATTCCCCACGCGTGTGGGGGTGAACC	GATAACGCTCTCCATGTCGGGAACTACCGCAAC
GTATTCCCCACGCGTGTGGGGGTGAACC	GGTTAGTAGGTGGTTTTTTACCACGAGTAAAGAA
GTATTCCCCACGCGTGTGGGGGTGAACC	GGCGTTCCCCCTTCGTTACTGACTTGGTACAA
GTATTCCCCACGCGTGTGGGGGTGAACC	GAGGATAGATAATCTAGATATAACGCCTAGTCA
GTATTCCCCACGCGTGTGGGGGTGAACC	GGTGTATTGTATAGTGCAGAACAAGACAACTAA
GTATTCCCCACGCGTGTGGGGGTGAAAC

>NZ_CP013074|1|1|1448725-1449363|CRISPRCasFinder
GTATTCCCCACGCGTGTGGGGGTGAACCG	TGATATATGCTAGGGTAGGTCTGTTAATGCCT
GTATTCCCCACGCGTGTGGGGGTGAACCG	TTATGTGTACTCAGGAAGAAATTGATGCCATT
GTATTCCCCACGCGTGTGGGGGTGAACCG	CGTGCGTGTCGGCAGTATAGATTTTGCTGTTA
GTATTCCCCACGCGTGTGGGGGTGAACCG	ATTGTCTAGGGTCAAATCTCTAGCGTGTAATT
GTATTCCCCACGCGTGTGGGGGTGAACCG	GCATCAAGTTCCTCCTGAATTCTTAAAATACT
GTATTCCCCACGCGTGTGGGGGTGAACCG	ATAACGCTCTCCATGTCGGGAACTACCGCAAC
GTATTCCCCACGCGTGTGGGGGTGAACCG	GTTAGTAGGTGGTTTTTTACCACGAGTAAAGAA
GTATTCCCCACGCGTGTGGGGGTGAACCG	GCGTTCCCCCTTCGTTACTGACTTGGTACAA
GTATTCCCCACGCGTGTGGGGGTGAACCG	AGGATAGATAATCTAGATATAACGCCTAGTCA
GTATTCCCCACGCGTGTGGGGGTGAACCG	GTGTATTGTATAGTGCAGAACAAGACAACTAA
GTATTCCCCACGCGTGTGGGGGTGAAACA

>NZ_CP013074|1|1|1448725-1449363|CRT
GTATTCCCCACGCGTGTGGGGGTGAACCG	TGATATATGCTAGGGTAGGTCTGTTAATGCCT
GTATTCCCCACGCGTGTGGGGGTGAACCG	TTATGTGTACTCAGGAAGAAATTGATGCCATT
GTATTCCCCACGCGTGTGGGGGTGAACCG	CGTGCGTGTCGGCAGTATAGATTTTGCTGTTA
GTATTCCCCACGCGTGTGGGGGTGAACCG	ATTGTCTAGGGTCAAATCTCTAGCGTGTAATT
GTATTCCCCACGCGTGTGGGGGTGAACCG	GCATCAAGTTCCTCCTGAATTCTTAAAATACT
GTATTCCCCACGCGTGTGGGGGTGAACCG	ATAACGCTCTCCATGTCGGGAACTACCGCAAC
GTATTCCCCACGCGTGTGGGGGTGAACCG	GTTAGTAGGTGGTTTTTTACCACGAGTAAAGAA
GTATTCCCCACGCGTGTGGGGGTGAACCG	GCGTTCCCCCTTCGTTACTGACTTGGTACAA
GTATTCCCCACGCGTGTGGGGGTGAACCG	AGGATAGATAATCTAGATATAACGCCTAGTCA
GTATTCCCCACGCGTGTGGGGGTGAACCG	GTGTATTGTATAGTGCAGAACAAGACAACTAA
GTATTCCCCACGCGTGTGGGGGTGAAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013074.1\|WP_046961576.1\|1440182_1442861_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP013074.1\|WP_046961408.1\|1438650_1439262_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013074.1\|WP_072555815.1\|1456327_1456957_-\|DUF4956-domain-containing-protein	unknown	unknown	gnl\|CDD\|379819
NZ_CP013074.1\|WP_046961417.1\|1451424_1452291_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|349764
NZ_CP013074.1\|WP_072555811.1\|1455242_1455932_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP013074.1\|WP_046961574.1\|1437167_1438601_+\|DUF2779-domain-containing-protein	unknown	unknown	gnl\|CDD\|371365
NZ_CP013074.1\|WP_072555819.1\|1457815_1459651_-\|carbohydrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|379528
NZ_CP013074.1\|WP_052753405.1\|1449680_1450154_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|319871
NZ_CP013074.1\|WP_046961416.1\|1450586_1451456_+\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|224071
NZ_CP013074.1\|WP_155760403.1\|1448359_1448683_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP013074.1\|WP_046961415.1\|1450195_1450540_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238431
NZ_CP013074.1\|WP_046961413.1\|1446919_1447549_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|187858
NZ_CP013074.1\|WP_072555817.1\|1456975_1457782_-\|VTC-domain-containing-protein	unknown	unknown	gnl\|CDD\|143622
NZ_CP013074.1\|WP_072555803.1\|1447548_1448478_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP013074.1\|WP_046961410.1\|1444474_1445008_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|378191
NZ_CP013074.1\|WP_046961411.1\|1445000_1446281_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP013074.1\|WP_072555807.1\|1452403_1453555_+\|Fic-family-protein	unknown	unknown	gnl\|CDD\|225718
NZ_CP013074.1\|WP_046961412.1\|1446277_1446898_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP013074.1\|WP_046961409.1\|1442853_1444485_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	pfam09481_cas8e_CAS-I-E	gnl\|CDD\|187860
NZ_CP013074.1\|WP_072555809.1\|1453869_1455246_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|182539

Protein	Function_ID	Function_description	E-value
NZ_CP013074.1\|WP_046961576.1\|1440182_1442861_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	9.93472e-116
NZ_CP013074.1\|WP_072555817.1\|1456975_1457782_-\|VTC-domain-containing-protein	gnl\|CDD\|143622	cd07750, PolyPPase_VTC_like, Polyphosphate(polyP) polymerase domain of yeast vacuolar transport chaperone (VTC) proteins VTC-2, -3 and- 4, and similar proteins. Saccharomyces cerevisiae VTC-1, -2, -3, and -4 comprise the membrane-integral VTC complex. VTC-2, -3, and -4 contain polyP polymerase domains. For S. cerevisiae VTC4 it has been shown that this domain generates polyP from ATP by a phosphotransfer reaction releasing ADP. This activity is metal ion-dependent. The ATP gamma phosphate may be cleaved and then transferred to an acceptor phosphate to form polyP. PolyP is ubiquitous. In prokaryotes, it is a store of phosphate and energy. In eukaryotes, polyPs have roles in bone calcification, and osmoregulation, and in phosphate transport in the symbiosis of mycorrhizal fungi and plants. This subgroup belongs to the CYTH/triphosphate tunnel metalloenzyme (TTM)-like superfamily, whose enzymes have a unique active site located within an eight-stranded beta barrel.	3.88372e-20
NZ_CP013074.1\|WP_072555815.1\|1456327_1456957_-\|DUF4956-domain-containing-protein	gnl\|CDD\|379819	pfam16316, DUF4956, Domain of unknown function (DUF4956). This family consists of uncharacterized proteins around 220 residues in length and is mainly found in various Bacteroides species. The function of this protein is unknown.	9.51761e-07
NZ_CP013074.1\|WP_046961417.1\|1451424_1452291_+\|4Fe-4S-binding-protein	gnl\|CDD\|349764	cd03110, SIMIBI_bact_arch, bacterial and archaeal subfamily of SIMIBI. Uncharacterized bacterial and archaeal subfamily of SIMIBI superfamily. Proteins in this superfamily contain an ATP-binding domain and use energy from hydrolysis of ATP to transfer electron or ion. The specific function of this family is unknown.	4.97629e-98
NZ_CP013074.1\|WP_072555811.1\|1455242_1455932_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	9.96721e-90
NZ_CP013074.1\|WP_046961574.1\|1437167_1438601_+\|DUF2779-domain-containing-protein	gnl\|CDD\|371365	pfam11074, DUF2779, Domain of unknown function(DUF2779). This domain is conserved in bacteria. The function is not known.	4.41269e-55
NZ_CP013074.1\|WP_072555819.1\|1457815_1459651_-\|carbohydrate-binding-domain-containing-protein	gnl\|CDD\|379528	pfam14262, Cthe_2159, Carbohydrate-binding domain-containing protein Cthe_2159. Cthe_2159 from Clostridium thermocellum is the first representative of a novel family of cellulose and/or acid-sugar binding beta-helix proteins that share structural similarities with polysaccharide lyases.	9.96751e-92
NZ_CP013074.1\|WP_052753405.1\|1449680_1450154_+\|4Fe-4S-binding-protein	gnl\|CDD\|319871	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein. This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.	1.2941e-11
NZ_CP013074.1\|WP_046961416.1\|1450586_1451456_+\|P-loop-NTPase	gnl\|CDD\|224071	COG1149, COG1149, MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion].	2.31091e-94
NZ_CP013074.1\|WP_155760403.1\|1448359_1448683_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	2.38996e-35
NZ_CP013074.1\|WP_046961415.1\|1450195_1450540_+\|hypothetical-protein	gnl\|CDD\|238431	cd00851, MTH1175, This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).	1.23489e-24
NZ_CP013074.1\|WP_046961413.1\|1446919_1447549_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	5.36276e-67
NZ_CP013074.1\|WP_072555803.1\|1447548_1448478_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	2.68758e-156
NZ_CP013074.1\|WP_046961410.1\|1444474_1445008_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	5.44695e-32
NZ_CP013074.1\|WP_046961411.1\|1445000_1446281_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	9.14165e-113
NZ_CP013074.1\|WP_072555807.1\|1452403_1453555_+\|Fic-family-protein	gnl\|CDD\|225718	COG3177, COG3177, Fic family protein [Function unknown].	6.64034e-46
NZ_CP013074.1\|WP_046961412.1\|1446277_1446898_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.50471e-46
NZ_CP013074.1\|WP_046961409.1\|1442853_1444485_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|187860	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; subunit of the Cascade complex; signature gene for I-E subtype; also known as Cse1/CasA/YgcL family.	1.24415e-100
NZ_CP013074.1\|WP_072555809.1\|1453869_1455246_-\|HAMP-domain-containing-protein	gnl\|CDD\|182539	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS.	3.59795e-68

>NZ_CP013074.1|WP_155760403.1|1448359_1448683_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MLVMILEKVPTSLRGALSRWLLEPKTGVFLGNPSARVRDELWDKAIKKTKASGVILQIWTDQNPQGFSSRQYGERERMFIDFEGLSLVKIDKNISTTKTQNSDTTNI
>NZ_CP013074.1|WP_072555803.1|1447548_1448478_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MRTLYELPRFRDRWSYLYLEMGRLDVDADGLGFHQGNCVVPVPIDQLGVVMLGPGSTVTHAAIKSLSQNNCLVAWTGQDGIRLYAASIGGTYSARRLIRQARLVSDEEKRLEVAWRMYRFRFNETIPPVVSLESIRGMEGIRVRRAYAKASQEYGVEWNGRHYDQKDWNKGDPINRALSAANACLYGICHAAILSAGYSSALGFVHTGKMLSFVYDIADLYKTELTIPVAFKIAAANPEDLERQVRMECREAFYKYKLLERLLPDIAEVLGVSDDIGEGPDEFEGRIVTLAVGTEDGSFSWEPERQGEG
>NZ_CP013074.1|WP_046961413.1|1446919_1447549_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSLLTLNSRSKRALTESSRPYELHRSLLKAFPDAADGGPGRVLFRLDVNEQTGSISTLIQSEKKPLWTRINGYASFVTECKCKEFKPALSLDQIFRFRLRANPTKRMKSTGKREGILNTTEQVEWLRKKGMNNGFEIIDVIALDEGFVKDKLTDTDNTGHNTNMFSVRFDGLLKVTDVDVFYSTLRSGIGSAKGFGFGLLSIAPIKE
>NZ_CP013074.1|WP_046961412.1|1446277_1446898_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MNEKYTLLIRLEGPLQSWGYRSRFDYRDTALEPTRSGVIGLICAAMGIARNENISKFDELRMGVRVDRGGKVEQDFHTALDVIKADGSGKDTVISFRDYLTDASFTIGLESSNQSLLAEITKALISPKWILFLGRKAFPLTSPPIFERHNPVKPGSLEENLLCGFPAKRVLLESPDGERTQLDWPRCFDKRYFKPRRFTVKYVPAE
>NZ_CP013074.1|WP_046961411.1|1445000_1446281_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSDSGIKYEIHLIQNFAPANLNRDDTGQPKSATFGGFRRARISSQCSKRSIRLQGLMAKLLEDKGAIRTRQLIMEIAKGISGEEPDAKTIETVAGVFEAGGLERPAKRSGKTKSSETETAGEDNETNSNEDSESKNTTKILLFIDKQAIAKLIDVFKDNWDDLAKGNKETKKKACDKVGRILFEAVKAPDIALFGRMLELKNNTPFGKYNMQVEAACQVAHPISTHKIDMEMDFYTAVDDLNPEGETGASMMGIVGFNSACYYRYALVDRDQLARNLSRKTERKNGAWVQELDIQDYQEADKVVKSFLEAMTYSIPTGKQNSFAAQNLPSFGLLVRRQGGVPISLANAFSTPVRPERGDDDLIGLSVNALTKHWDSTKELYGEQGIKTVACFHLQQEKRLNGLANSAQTSVEKVINEVLKPNEEEK
>NZ_CP013074.1|WP_046961410.1|1444474_1445008_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MGLDERQKLFIGYLCSLAKKGQEDRGALADLRSGLGKRPDEMARIHRHVVPYLPDKNYNDRWYYLIATLFGYYPEHRGNYSLGKAFKPLRTKSTSMETRFIALLNAHYEDLDKHLRYTVSLLKANEQPLDWFQLFQDLLQWDSPEGHVQLRWARDFFSVNSSDENTKKQTIGEENNE
>NZ_CP013074.1|WP_046961409.1|1442853_1444485_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MAEFNLVEGPWIPCISPDGNISEYSIRDVLLQSHNLSEICDDSPLVTVAIHRLLLAILYRALEGPNNIQEWRDLYQKHSFAQSRINEYLYKWEQKFNLLDQSYPFYQMSQLVTAKPISTNRLATEIASGNNATLFDHGGDDIIVEWTAPQAARYLVTCQSFALGFGKSGNAKINGINETLPYSSDAIALRGMNIWIQGENLFKTLMINLSPIKDISLPPWELENPNKYRDKQENNNRIVFGSFGLVDQLTWQSRLMRLIPDNQTISKMYFTQGRSADKCAIDPMKVYRLSKDEGVSALAFSSNKSAWRDFHSILMIPESGSKEHRPECFNMAEEAISNDDVNDSKIFITHVAGLATAPNKAGKFIFWRHERMPVPAALLNNTDLLERLGKCLAYAERAAGVLKYRIQRVIKLYLSPDCELPGGHQPDPSDIAKLIESLDPRPAYWSRMEDHFMTLIENLPNDWDTDTGDSKPDEKQMARLTWRQNIKHQAKNAFLESIAALGTTTRAIQAIAHVPVDFSDLDLDRQPIEKIKRKEKENYNNGP
>NZ_CP013074.1|WP_046961576.1|1440182_1442861_+|CRISPR-associated-helicase/endonuclease-Cas3
MVNGPNLKLWAKTGRDGDLHYHPLLYHMLDVAAVATYLWELLSEDQRRRIGHIIGSEARTITLFLAGGHDIGKACPGFQQQAPQLSKLIELPMSLNSCHRPHAFVSACILNRFFTNLLGQIAGGHHGIFPQPLDLRMGCDTLGNIEWETARDGLLQELATALKIDINDDTECKPQIIDPFIVPMLAGLISIADWIGSNQDFFPCLTEPGQQFDIIADKYFESAKDRAGKALRELGWMPEVTFAKEAPFTSVFSNFIPNDLQKSTEHMAIEQDSPYLMIIEAPTGQGKTEAALYAADLALCRGFARGIYIAMPTQATSNAMFKRVLFDYLKKRGHKGKLNLQLVHGNALLAGIGEAHKGEISDFKITDICADNTYADTEAQSWFTAKKRPLLSPFGVGTIDQSLLSVLQTRHWFVRLFGLAGKVVIFDEIHAYDAYMSTMLERLLHWLAEVDCTVILLSATLPKTKRTALIHAYSGQNSLEKQCYPRITLAKPRHHITQETETPIICKEIPAEDSHCIFLDFSKNEPEILAEELRRKLEHGGCAAVICNTVNSSIKLFRYLKTNLNETECLLFHARTLQAWRRKREDEVLRKFGKGKKQSDGTYINPDRPFRAILVATQVIEQSLDLDFDLMFSEIGPVDLLLQRAGRLHRHLRTRPADLEKPQLTILCGGNLLGPPPDTFGDDIEHIYSRYILLRTWLVLRGKNKIEIPAETENLIEKVYGTDNELCQPDWLKALEEAKRDLTYTQQESQKAASRLLINPPNNSEDVIRQFNYQLFDDDDPEVHKTLRAATREGDQPIMLVIVKANSVIISEPTLDEVRDLLDHSVMLSLKGLYQELICNYQTPKEWRDNTHLNHARLIRLDENSRAKIGDYILTVDETLGIMIEKESKDNG
>NZ_CP013074.1|WP_046961408.1|1438650_1439262_+|hypothetical-protein
MKDIWYGDKRDLVKWGVLLTLSKEFSAKRILQVAYYKKEEFEQLEIDGSKYSIPEEVKNHFRNMLNIRNMPNTIPIDVFTDEFDNRDSYYEKVIYNITSGIHPCLVFLDPDTGIVPASGHYKDKHVLEDELKTIWDKLKNGDILACYQHRTNRNSNKDWAMEKKDQFERALGLAAGSSKLAQGSKTAGDMVIFYCQKICDISE
>NZ_CP013074.1|WP_046961574.1|1437167_1438601_+|DUF2779-domain-containing-protein
MGLQCPRLLWKATNDAANMPSVSPSTQFVFEQGHQVGELAKQLYPGGLNLKTENFSQNLKDTKEALGCVLPVFEAGFATERLYSRVDILAPAEGDGWDIIEIKSTTDIKEEHLYDVAFQRYCCRLGGLNIRNCYLMHINKNYIKNGGIYPAEFFTLKDITQETEGYSGNLEGNIEAMLAIIDSDTCPEARPGKQCTSPHDCPLKDQCWADLPEHNIFTLYYGNKILPELQAQGIWDIRQIPPEFKLNPKQLIQKNCAVSGQVYTNPAEIGAFLNKLEYPLHYLDFETFATAIPVYDYTRPYQNIPFQFSLHIQQSPNSETKHYSYLAEDGYDPRPAFLSALKSSIAPQGSILVYSEIFEKARLKELAAAFPEYAGWVEGILGRILDLIVPFRDFSYYHPGQHGSASLKHVMPALAGLGYDELEIGEGQTASLRFMESVFGNLPPDEIRKIRADLEIYCGQDTGGMVEIVRKLREIGG
>NZ_CP013074.1|WP_052753405.1|1449680_1450154_+|4Fe-4S-binding-protein
MLSVNKELCNGCGVCQKLCPQEAINIQDGIANIYQDICTQCNLCLKKCPKGAISEQTNTNKNFKEKGDTQMFYRQHRNCLLNNQPRMGFSELSSNYPYIGRGRGGLPRCQQPGLQRIPVNPGAIPQDENIGQLKAEAERLSREISRINERIQSIENQ
>NZ_CP013074.1|WP_046961415.1|1450195_1450540_+|hypothetical-protein
MKIAISATGDTLEAYIDQRFGRCKYFIIANPQTLEYESLDNSEIAGNGGAGIKAAQLVCEQGVEAVITGSCGPNASEVLNAAGIKIITNTDGQIKTVLQNFQKGTGECTPTSEI
>NZ_CP013074.1|WP_046961416.1|1450586_1451456_+|P-loop-NTPase
MIISVASGKGGTGKTLVSTSLAISLKALYNTQLLDCDVEEPDVHIFLKPVIQSSSIVSIPVPQVDENKCTYCGRCARWCQFGAISVIGGKHINLFPQLCHACGTCTYLCPQKALTEVPHSCGRVDSGNAGNLSFVAGTLDIGSNQTIPLIHKVKAMATDNNVVIIDCPPGTSCPAFESIHGSDYCLLVSEPTPFGLNDLKLAVETVRKLDIPFGLILNRTGNVFTPMDEYCRAENISILMSIPYDAKIASLYSKGLVLAEEDPNWLKEFQTLFTNIRGQLGKRNRYPEW
>NZ_CP013074.1|WP_046961417.1|1451424_1452291_+|4Fe-4S-binding-protein
MAKEIVILSGKGGTGKTSLVSSFASIVENAVLVDCDVDAADLHLLVHPEIQVEQPFIYGQTAVIDPQVCNRCGRCQDLCRFNAIGNFRIDTSRCEGCALCFMVCPLQAIQMEPKICGRWFLSDTRYGPMLHARLDTGAGNSGKLVSLLRQTAREVARKADCEFILVDGPPGIGCPVISSLTGADLVIIITEPTLSGIHDLGRVIGICKHFEIPSLVCLNKCDINPGNSQQIEDYCRNQGIKIISYLPFSDVFTEAQLNGVPPIEYTDGNLRELIRNTWVKITKHIEKV
>NZ_CP013074.1|WP_072555807.1|1452403_1453555_+|Fic-family-protein
MPTIQIGRYIQQLGGFKAFIPSPFPPPEGFAFRQATIKKSIQATHLLGKLDGITQLLPDVDFFILMYLRKDAASSSQIEGTKATMVDAIEAEIKITDKLPVDVDDILHYIRALNYGMKRVAEDNFPVSLRLLREIHRELMLNARTTQYADPGEFRHSQNWIGGTRPDNATFVPPPVNEMHIALGDLEKFINTNDDIPSVIKAGLIHAQFETIHPFLDGNGRTGRMLITLYLWKEGLLEKPILFLSSYFKRYQNIYYSKLTGYHQGGLDEWINFFLDGVIEMAGESIEIVGKITALREKDMSKIQTLGKRAAESACSVLPRLYGQPIVNLATIQKWTGFNTRAGAQIVINRFIELGILIPKDKNKKYGQSYVYRDYLDIFTAND
>NZ_CP013074.1|WP_072555809.1|1453869_1455246_-|HAMP-domain-containing-protein
MIHRLQFKLLVSFVAVIAIAMGMVFIFVSHNAQSEFQQFGMQYDEARFGKVEFELKHYYLEHGDWEGIQSLVEQWGNLYDRRIILTDYAHLVVADSENILQGQLYTSYGGRALSVNTLTGGYDQNSGSPSAGDTLIGTLYIDSATPAGAEFPTPVSLTPSIERFLLLGGGLALAIALLISWFLSRRILSPVQSIIQATEGLSRGDLSQRVMIADKGELGAMATAFNSMAGELEHSREVQHNMIADIAHELRTPLSNINGYLEAVQDGVVRPDQVTINTLTEETRLLSRLVNDLQELSLAEIGELRLQKTRSDVKEVIHLSIRAIQRHARAKGIKLKAVFGQSLPAVEMDTHRIGQVLNNLLENAVTHSENGDAITVKAEYLSGFVEISIEDTGEGIPETELKYVFDRFYRVDKSRSRHTGGSGLGLSIVKGLVEAHGGTIRVSSTVGKGTIFTFKIPA
>NZ_CP013074.1|WP_072555811.1|1455242_1455932_-|response-regulator-transcription-factor
MVARILIVEDDAKTVELVRLYLARDGYRVLAASDGITGLDIARQNKPDLIILDIMLPGMNGIEICRQLRLESGVPVIMLTAKTQDDDKLQGLDTGADDYITKPFSPRELAARVRAILRRLPGIRTPEIIKCGELTLDFSRHQVTLNGAGVKLTAVELKLLRAMAAEPGRVFSRSQLIEQALGYDFDGFDRTIDVHIGNLRRKLRLNKTNTCFIQTIYGAGYRFVCESEI
>NZ_CP013074.1|WP_072555815.1|1456327_1456957_-|DUF4956-domain-containing-protein
MDQLLENILPVGFSLVSAVVTYLMYQYFYGNRHIGAGVHRTFIIGGPSITVLFLGIQSSIPLSLGLLGALSFVRFRTPVKDPAEIGFLLLLIASSVGAATENYVLTGILFAVVFMAMAIQQALGKHLSSQGGNHIIITLDQSAFQDSEDKLNNFLQGNLKYLKLENMSAVEGKVNLHYQYRSSAGFDSLRFTKELRELVQPGQMEIFLN
>NZ_CP013074.1|WP_072555817.1|1456975_1457782_-|VTC-domain-containing-protein
MSLTDKSGVSALSRSTRQRQNITQFQPRIERKFYLSPAKVRMAYGLLRTVALPHPGYASEQINSLYYDTAGLDLFERSISGDYQKDKIRLRWYGDSVWPEADCPAYLELKMRRGFEGSKKRVEAKLNIPQPGRLPDSEGLISRKLLYDTLGDFGWDINAPLYPVISISYWRYRFIEVSTGLSLALDCHIRSTVVAAGLGYKEHNLEMEGGVLEIKGRDMELPSSLNPLRILDIDWSRFSKYAACLEAHQQKPGSQSRLLPSGLLDQSE
>NZ_CP013074.1|WP_072555819.1|1457815_1459651_-|carbohydrate-binding-domain-containing-protein
MQKTFLDKALLLVCMLVLFAGLISCSSQLSDTDSGTTRQTDIFTSISLAETISVEGEGVTVDGSQLVITSAGTYTLSGELADGRIIVDTKDEADVIIILNGVNISCSASSAIYIKSAANAFITLAEGTENYVSDGESYFSEGSAVDEPNAAIFSKSDLTINGNGSLTVTGNYNNGIQSKDDLEITAGTLVVKAVNDGIKGRDSVVIRQASVIIEAGGDGIQSTNDENAEKGFVLIESGYLDITAGEDGVQAETDLTVSGGEITIFCGGGSANSSSVNNSNPAGGMGGSWGFWGVDDNTVASAVTGSAKGLKAGGQLTISGGNLKIDSSDDSLHSNSSLLIGGGSLILSSGDDGIHADTSIEINAGTISILKSYEGIESAEITINGGSISVVSSDDGINVAGGNDQSSINGRPGQNSFTSSTDNWLYINGGYLVINASGDGIDTNGSAAMTGGIVIVSGPTGNDNGALDYMGTFKVSGGYLLAVGSSGMAQAPDSSSSQYSLMLNFSTVQAAGSLIHIETSTGEDILTYISPKAYQSVVLCSPLLSSGLTCLVYTGGYSSGTATDGLYSGGVYTGGSQVLTLTISGVVTQAGSGGSGSFPGGGSFPGGGGRP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013074_1	1.10\|1449302\|33\|NZ_CP013074\|PILER-CR	1449302-1449334	33	LC494302	Escherichia phage SP27 DNA, complete genome	300103-300135	7	0.788
NZ_CP013074_1	1.10\|1449302\|33\|NZ_CP013074\|PILER-CR	1449302-1449334	33	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	241612-241644	7	0.788
NZ_CP013074_1	1.10\|1449302\|33\|NZ_CP013074\|PILER-CR	1449302-1449334	33	KM507819	Escherichia phage 121Q, complete genome	300739-300771	7	0.788
NZ_CP013074_1	1.10\|1449302\|33\|NZ_CP013074\|PILER-CR	1449302-1449334	33	MK817115	Escherichia phage vB_EcoM_phAPEC6, complete genome	176434-176466	7	0.788
NZ_CP013074_1	1.10\|1449302\|33\|NZ_CP013074\|PILER-CR	1449302-1449334	33	NC_027364	Escherichia phage PBECO 4, complete genome	330563-330595	7	0.788
NZ_CP013074_1	1.10\|1449302\|33\|NZ_CP013074\|PILER-CR	1449302-1449334	33	MH383160	Escherichia phage UB, complete genome	43701-43733	7	0.788
NZ_CP013074_1	1.10\|1449302\|33\|NZ_CP013074\|PILER-CR	1449302-1449334	33	MK327931	Escherichia phage vB_EcoM_G17, complete genome	201738-201770	7	0.788
NZ_CP013074_1	1.20\|1449303\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1449303-1449334	32	LC494302	Escherichia phage SP27 DNA, complete genome	300103-300134	7	0.781
NZ_CP013074_1	1.20\|1449303\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1449303-1449334	32	MK817115	Escherichia phage vB_EcoM_phAPEC6, complete genome	176435-176466	7	0.781
NZ_CP013074_1	1.20\|1449303\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1449303-1449334	32	NC_027364	Escherichia phage PBECO 4, complete genome	330564-330595	7	0.781
NZ_CP013074_1	1.20\|1449303\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1449303-1449334	32	MH383160	Escherichia phage UB, complete genome	43702-43733	7	0.781
NZ_CP013074_1	1.20\|1449303\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1449303-1449334	32	MK327931	Escherichia phage vB_EcoM_G17, complete genome	201739-201770	7	0.781
NZ_CP013074_1	1.20\|1449303\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1449303-1449334	32	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	241612-241643	7	0.781
NZ_CP013074_1	1.20\|1449303\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1449303-1449334	32	KM507819	Escherichia phage 121Q, complete genome	300739-300770	7	0.781
NZ_CP013074_1	1.20\|1449303\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1449303-1449334	32	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	139338-139369	7	0.781
NZ_CP013074_1	1.20\|1449303\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1449303-1449334	32	MT446416	UNVERIFIED: Escherichia virus TH47, complete genome	289314-289345	7	0.781
NZ_CP013074_1	1.20\|1449303\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1449303-1449334	32	MH494197	Escherichia phage CMSTMSU, complete genome	319720-319751	7	0.781
NZ_CP013074_1	1.10\|1449302\|33\|NZ_CP013074\|PILER-CR	1449302-1449334	33	MH494197	Escherichia phage CMSTMSU, complete genome	319719-319751	8	0.758
NZ_CP013074_1	1.12\|1448815\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1448815-1448846	32	NC_014663	Acinetobacter phage Acj9, complete genome	19068-19099	10	0.688
NZ_CP013074_1	1.17\|1449120\|33\|NZ_CP013074\|CRISPRCasFinder,CRT	1449120-1449152	33	MN693419	Marine virus AFVG_25M178, complete genome	14292-14324	10	0.697
NZ_CP013074_1	1.7\|1449119\|34\|NZ_CP013074\|PILER-CR	1449119-1449152	34	MN693419	Marine virus AFVG_25M178, complete genome	14291-14324	11	0.676
NZ_CP013074_1	1.11\|1448754\|32\|NZ_CP013074\|CRISPRCasFinder,CRT	1448754-1448785	32	NC_031100	Bacillus phage Phrodo, complete genome	108656-108687	11	0.656

1. spacer 1.10|1449302|33|NZ_CP013074|PILER-CR matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 7, identity: 0.788

ggtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
ggtgtaatgtatagtgcagaacatgattttaaa	Protospacer
****** **************** **.  . **

2. spacer 1.10|1449302|33|NZ_CP013074|PILER-CR matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 7, identity: 0.788

ggtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
ggtgtaatgtatagtgcagaacatgattttaaa	Protospacer
****** **************** **.  . **

3. spacer 1.10|1449302|33|NZ_CP013074|PILER-CR matches to KM507819 (Escherichia phage 121Q, complete genome) position: , mismatch: 7, identity: 0.788

ggtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
ggtgtaatgtatagtgcagaacatgattttaaa	Protospacer
****** **************** **.  . **

4. spacer 1.10|1449302|33|NZ_CP013074|PILER-CR matches to MK817115 (Escherichia phage vB_EcoM_phAPEC6, complete genome) position: , mismatch: 7, identity: 0.788

ggtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
ggtgtaatgtatagtgcagaacatgattttaaa	Protospacer
****** **************** **.  . **

5. spacer 1.10|1449302|33|NZ_CP013074|PILER-CR matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 7, identity: 0.788

ggtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
ggtgtaatgtatagtgcagaacatgattttaaa	Protospacer
****** **************** **.  . **

6. spacer 1.10|1449302|33|NZ_CP013074|PILER-CR matches to MH383160 (Escherichia phage UB, complete genome) position: , mismatch: 7, identity: 0.788

ggtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
ggtgtaatgtatagtgcagaacatgattttaaa	Protospacer
****** **************** **.  . **

7. spacer 1.10|1449302|33|NZ_CP013074|PILER-CR matches to MK327931 (Escherichia phage vB_EcoM_G17, complete genome) position: , mismatch: 7, identity: 0.788

ggtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
ggtgtaatgtatagtgcagaacatgattttaaa	Protospacer
****** **************** **.  . **

8. spacer 1.20|1449303|32|NZ_CP013074|CRISPRCasFinder,CRT matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 7, identity: 0.781

gtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
gtgtaatgtatagtgcagaacatgattttaaa	Protospacer
***** **************** **.  . **

9. spacer 1.20|1449303|32|NZ_CP013074|CRISPRCasFinder,CRT matches to MK817115 (Escherichia phage vB_EcoM_phAPEC6, complete genome) position: , mismatch: 7, identity: 0.781

gtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
gtgtaatgtatagtgcagaacatgattttaaa	Protospacer
***** **************** **.  . **

10. spacer 1.20|1449303|32|NZ_CP013074|CRISPRCasFinder,CRT matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 7, identity: 0.781

gtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
gtgtaatgtatagtgcagaacatgattttaaa	Protospacer
***** **************** **.  . **

11. spacer 1.20|1449303|32|NZ_CP013074|CRISPRCasFinder,CRT matches to MH383160 (Escherichia phage UB, complete genome) position: , mismatch: 7, identity: 0.781

gtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
gtgtaatgtatagtgcagaacatgattttaaa	Protospacer
***** **************** **.  . **

12. spacer 1.20|1449303|32|NZ_CP013074|CRISPRCasFinder,CRT matches to MK327931 (Escherichia phage vB_EcoM_G17, complete genome) position: , mismatch: 7, identity: 0.781

gtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
gtgtaatgtatagtgcagaacatgattttaaa	Protospacer
***** **************** **.  . **

13. spacer 1.20|1449303|32|NZ_CP013074|CRISPRCasFinder,CRT matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 7, identity: 0.781

gtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
gtgtaatgtatagtgcagaacatgattttaaa	Protospacer
***** **************** **.  . **

14. spacer 1.20|1449303|32|NZ_CP013074|CRISPRCasFinder,CRT matches to KM507819 (Escherichia phage 121Q, complete genome) position: , mismatch: 7, identity: 0.781

gtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
gtgtaatgtatagtgcagaacatgattttaaa	Protospacer
***** **************** **.  . **

15. spacer 1.20|1449303|32|NZ_CP013074|CRISPRCasFinder,CRT matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 7, identity: 0.781

gtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
gggtaatgtatagtgcagaacacgactttaaa	Protospacer
* *** **************** ***  . **

16. spacer 1.20|1449303|32|NZ_CP013074|CRISPRCasFinder,CRT matches to MT446416 (UNVERIFIED: Escherichia virus TH47, complete genome) position: , mismatch: 7, identity: 0.781

gtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
gggtaatgtatagtgcagaacacgactttaaa	Protospacer
* *** **************** ***  . **

17. spacer 1.20|1449303|32|NZ_CP013074|CRISPRCasFinder,CRT matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 7, identity: 0.781

gtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
gggtaatgtatagtgcagaacacgactttaaa	Protospacer
* *** **************** ***  . **

18. spacer 1.10|1449302|33|NZ_CP013074|PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 8, identity: 0.758

ggtgtattgtatagtgcagaacaagacaactaa	CRISPR spacer
tgggtaatgtatagtgcagaacacgactttaaa	Protospacer
 * *** **************** ***  . **

19. spacer 1.12|1448815|32|NZ_CP013074|CRISPRCasFinder,CRT matches to NC_014663 (Acinetobacter phage Acj9, complete genome) position: , mismatch: 10, identity: 0.688

ttatgtgtactcaggaagaaattgatgccatt	CRISPR spacer
aaggttggactcagaaagaaattgatgcagtg	Protospacer
  .  ** ******.************* .*

20. spacer 1.17|1449120|33|NZ_CP013074|CRISPRCasFinder,CRT matches to MN693419 (Marine virus AFVG_25M178, complete genome) position: , mismatch: 10, identity: 0.697

gttagtaggtggttttttaccacgagtaaagaa	CRISPR spacer
agcgtcaactgtttttttaccacgagtaaacaa	Protospacer
. .. .*. ** ****************** **

21. spacer 1.7|1449119|34|NZ_CP013074|PILER-CR matches to MN693419 (Marine virus AFVG_25M178, complete genome) position: , mismatch: 11, identity: 0.676

ggttagtaggtggttttttaccacgagtaaagaa	CRISPR spacer
aagcgtcaactgtttttttaccacgagtaaacaa	Protospacer
.. .. .*. ** ****************** **

22. spacer 1.11|1448754|32|NZ_CP013074|CRISPRCasFinder,CRT matches to NC_031100 (Bacillus phage Phrodo, complete genome) position: , mismatch: 11, identity: 0.656

tgatatatgctagggtaggtctgttaatgcct	CRISPR spacer
aatcgtatgctagtgtaggtatgttaatcatc	Protospacer
 . ..******** ****** *******  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

302743 : 309530

uncultured_Mediterranean_phage(33.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041330552.1\|302743_303223_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	5.3e-26	42.8
WP_012881526.1\|303311_303566_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	9.1e-17	52.3
WP_041330554.1\|303674_304163_-	CvpA family protein	NA	NA	NA	NA
WP_023651855.1\|304259_305063_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	2.2e-32	35.4
WP_023651856.1\|305064_307506_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	4.9e-216	48.7
WP_023651857.1\|307685_308993_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	1.8e-15	43.3
WP_023651858.1\|308999_309530_+	GrpB family protein	A0A2K5B2B6	Erysipelothrix_phage	1.6e-39	51.2

DBSCAN-SWA_2

516598 : 532016

Bacillus_phage(20.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041330708.1\|516598_517891_+	phosphoglucosamine mutase	A0A127AWJ1	Bacillus_phage	2.8e-21	24.0
WP_023652047.1\|517892_519095_+	NTP transferase domain-containing protein	G3MA50	Bacillus_virus	2.3e-17	31.2
WP_041330710.1\|519110_520292_+	NTP transferase domain-containing protein	A0A1D7XFC1	Escherichia_phage	1.2e-15	31.1
WP_041330712.1\|520292_522074_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1HMK6	Paramecium_bursaria_Chlorella_virus	1.0e-106	39.7
WP_023652050.1\|522080_522533_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_041330713.1\|522544_523249_-	HAD family hydrolase	NA	NA	NA	NA
WP_041330715.1\|523386_524691_+	diaminopimelate decarboxylase	A0A0N7KVV8	Yellowstone_lake_phycodnavirus	2.5e-17	24.2
WP_023652053.1\|524704_525724_+	DNA polymerase III subunit delta'	A0A1U9WR94	Streptococcus_virus	9.4e-12	27.0
WP_023652054.1\|525726_526560_+	stage 0 sporulation family protein	NA	NA	NA	NA
WP_023652055.1\|526548_527079_-	HNH endonuclease	H6WG01	Cyanophage	9.8e-21	36.6
WP_041330717.1\|527150_528563_-	ATP-binding protein	A0A1B1P8D0	Bacillus_phage	3.3e-23	32.8
WP_041330718.1\|528486_529197_-	DnaD domain protein	NA	NA	NA	NA
WP_041330720.1\|529193_530570_-	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	7.0e-87	41.1
WP_041330722.1\|530570_531026_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_041330724.1\|531095_532016_-	thioredoxin-disulfide reductase	A0A249XZT7	Enterococcus_phage	2.3e-49	41.3

DBSCAN-SWA_3

995123 : 1030808

Geobacillus_phage(23.08%)

portal,terminase,plate,tRNA,tail,protease,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041330998.1\|995123_998168_-\|tRNA	isoleucine--tRNA ligase	A0A2K9L260	Tupanvirus	1.5e-153	33.1
WP_041330999.1\|998468_999149_-	protein jag	NA	NA	NA	NA
WP_023652440.1\|999060_1000008_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_041331001.1\|1000019_1001135_-	PQQ-like beta-propeller repeat protein	NA	NA	NA	NA
WP_012984367.1\|1001144_1001357_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.4e-18	56.5
WP_023652442.1\|1001328_1001691_-	ribonuclease P protein component	NA	NA	NA	NA
WP_010936738.1\|1001750_1001891_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_012882186.1\|1001925_1002369_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_012882187.1\|1002403_1002811_-	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	3.4e-21	46.3
WP_012882188.1\|1002858_1003188_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_148311300.1\|1003386_1004181_-	recombinase zinc beta ribbon domain-containing protein	NA	NA	NA	NA
WP_052465195.1\|1004980_1005586_-	NYN domain-containing protein	NA	NA	NA	NA
WP_041331002.1\|1005820_1006162_-	hypothetical protein	NA	NA	NA	NA
WP_041331003.1\|1006181_1006673_-	SHOCT domain-containing protein	NA	NA	NA	NA
WP_072555720.1\|1006712_1007303_-	hypothetical protein	NA	NA	NA	NA
WP_052465196.1\|1007303_1008194_-	helix-turn-helix domain-containing protein	A0A1U9WQN6	Geobacillus_phage	9.7e-05	38.0
WP_041331006.1\|1008578_1008758_+	hypothetical protein	NA	NA	NA	NA
WP_155760396.1\|1008754_1008928_+	hypothetical protein	NA	NA	NA	NA
WP_041331007.1\|1009128_1009341_+	hypothetical protein	NA	NA	NA	NA
WP_052465197.1\|1009341_1010292_+	hypothetical protein	NA	NA	NA	NA
WP_148311291.1\|1010359_1010572_+	hypothetical protein	NA	NA	NA	NA
WP_052465198.1\|1010600_1011656_+	DUF4373 domain-containing protein	NA	NA	NA	NA
WP_072555724.1\|1011768_1012197_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_072555726.1\|1012189_1012564_+	hypothetical protein	NA	NA	NA	NA
WP_072555728.1\|1012564_1012948_+	hypothetical protein	NA	NA	NA	NA
WP_072555732.1\|1013407_1014157_+	hypothetical protein	NA	NA	NA	NA
WP_072555736.1\|1014362_1014584_+	hypothetical protein	NA	NA	NA	NA
WP_072555740.1\|1014859_1015300_+	hypothetical protein	A8ASP1	Listeria_phage	7.9e-16	37.2
WP_072555742.1\|1015301_1015538_+	hypothetical protein	NA	NA	NA	NA
WP_072555744.1\|1015540_1015897_+	hypothetical protein	NA	NA	NA	NA
WP_072555746.1\|1015940_1016135_+	hypothetical protein	NA	NA	NA	NA
WP_072555748.1\|1016229_1016418_+	hypothetical protein	NA	NA	NA	NA
WP_072555750.1\|1016414_1016612_+	hypothetical protein	NA	NA	NA	NA
WP_072555752.1\|1016605_1017013_+	hypothetical protein	NA	NA	NA	NA
WP_072555754.1\|1017515_1017860_+	HNH endonuclease	A0A0N9ENE5	Pseudomonas_phage	5.6e-09	59.6
WP_072555756.1\|1017974_1018988_+	hypothetical protein	A0A290GHM3	Caldibacillus_phage	2.2e-21	29.8
WP_072555760.1\|1019357_1019618_+	hypothetical protein	NA	NA	NA	NA
WP_155760398.1\|1019601_1019778_+	hypothetical protein	NA	NA	NA	NA
WP_072555762.1\|1019774_1020143_-	type II toxin-antitoxin system HicB family antitoxin	A0A0K2CZV4	Paenibacillus_phage	1.7e-19	43.7
WP_072555764.1\|1020163_1020385_-	hypothetical protein	NA	NA	NA	NA
WP_041331045.1\|1020479_1020680_+	hypothetical protein	NA	NA	NA	NA
WP_072555766.1\|1020660_1021200_+	hypothetical protein	M4SRS8	Psychrobacter_phage	2.5e-16	39.1
WP_172812217.1\|1021189_1022356_+\|terminase	terminase	A0A1B0WLL2	Flavobacterium_phage	8.6e-70	39.3
WP_072555768.1\|1022367_1024350_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	1.1e-93	33.3
WP_072555770.1\|1024406_1025270_+\|head,protease	HK97 family phage prohead protease	W8EBB3	Geobacillus_phage	2.4e-37	43.3
WP_072555772.1\|1025270_1026482_+\|capsid	phage major capsid protein	A0A0K1LLG2	Bacillus_phage	1.6e-79	43.1
WP_072555774.1\|1026537_1026921_+	hypothetical protein	NA	NA	NA	NA
WP_072555776.1\|1026985_1027186_+	hypothetical protein	NA	NA	NA	NA
WP_072555778.1\|1027186_1027642_+	hypothetical protein	NA	NA	NA	NA
WP_072555780.1\|1027643_1029296_+	hypothetical protein	NA	NA	NA	NA
WP_041331055.1\|1029366_1029885_+	hypothetical protein	NA	NA	NA	NA
WP_041331057.1\|1029898_1030228_+\|plate	BppU family phage baseplate upper protein	NA	NA	NA	NA
WP_041331058.1\|1030229_1030808_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage