CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP013247	Clostridium botulinum strain CDC_69094 chromosome, complete genome	4 crisprs	WYL,DEDDh,cas3,csa3,DinG,c2c9_V-U4	0	5	5	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013247_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013247_2

1012920-1013015

Orphan

III-B

Consensus_repeat	Method
ATTTAAATACATCCTATGTTAAGGTTCAAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013247_2

>merge|NZ_CP013247|2|1012920-1013015|CRISPRCasFinder
GCTTAAATACATCTTATGTTACTGTTCAACTACAAATCCAAAAGAAATTGATTTAAATCAAATAAAATTTAAATACATCTTATGTTACTGTTCAAC

>NZ_CP013247|2|2|1012920-1013015|CRISPRCasFinder
GCTTAAATACATCTTATGTTACTGTTCAAC	TACAAATCCAAAAGAAATTGATTTAAATCAAATAAA
ATTTAAATACATCTTATGTTACTGTTCAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013247.1\|WP_061318021.1\|999418_1000558_-\|DOIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341476
NZ_CP013247.1\|WP_003485279.1\|1009792_1010509_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
NZ_CP013247.1\|WP_061317844.1\|1013530_1013704_+\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|238518
NZ_CP013247.1\|WP_045540158.1\|1009331_1009769_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|182417
NZ_CP013247.1\|WP_003358482.1\|1009018_1009303_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP013247.1\|WP_003358205.1\|1004657_1005011_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379915
NZ_CP013247.1\|WP_061317847.1\|1016371_1016893_+\|DUF4825-domain-containing-protein	unknown	unknown	gnl\|CDD\|379767
NZ_CP013247.1\|WP_061318020.1\|1001121_1003113_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
NZ_CP013247.1\|WP_061317845.1\|1013777_1015184_+\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NZ_CP013247.1\|WP_061317848.1\|1017004_1019002_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239241
NZ_CP013247.1\|WP_061317851.1\|1023030_1023264_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_004451526.1\|1021813_1022662_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP013247.1\|WP_003358211.1\|1007641_1009006_-\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
NZ_CP013247.1\|WP_061317849.1\|1019109_1019907_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
NZ_CP013247.1\|WP_061317843.1\|1013173_1013416_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061317841.1\|1005336_1007430_-\|transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP013247.1\|WP_061317842.1\|1011412_1012147_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236545
NZ_CP013247.1\|WP_061317850.1\|1020625_1021495_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP013247.1\|WP_045906294.1\|1003102_1003870_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP013247.1\|WP_061317846.1\|1015286_1016027_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|100107

Protein	Function_ID	Function_description	E-value
NZ_CP013247.1\|WP_061318021.1\|999418_1000558_-\|DOIS-domain-containing-protein	gnl\|CDD\|341476	cd08197, DOIS, 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homolog of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.	1.73999e-153
NZ_CP013247.1\|WP_003485279.1\|1009792_1010509_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	6.47741e-157
NZ_CP013247.1\|WP_061317844.1\|1013530_1013704_+\|M24-family-metallopeptidase	gnl\|CDD\|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	7.33995e-13
NZ_CP013247.1\|WP_045540158.1\|1009331_1009769_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|182417	PRK10372, PRK10372, PTS ascorbate transporter subunit IIA.	4.73815e-38
NZ_CP013247.1\|WP_003358482.1\|1009018_1009303_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	1.57443e-28
NZ_CP013247.1\|WP_003358205.1\|1004657_1005011_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379915	pfam17032, zinc_ribbon_15, zinc-ribbon family. This zinc-ribbon region is found on a set of largely microsporidia-specific proteins.	0.000168002
NZ_CP013247.1\|WP_061317847.1\|1016371_1016893_+\|DUF4825-domain-containing-protein	gnl\|CDD\|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	1.23442e-25
NZ_CP013247.1\|WP_061318020.1\|1001121_1003113_-\|ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	0.000529996
NZ_CP013247.1\|WP_061317845.1\|1013777_1015184_+\|peptide-MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.9059e-120
NZ_CP013247.1\|WP_061317848.1\|1017004_1019002_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
NZ_CP013247.1\|WP_004451526.1\|1021813_1022662_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.39603e-61
NZ_CP013247.1\|WP_003358211.1\|1007641_1009006_-\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
NZ_CP013247.1\|WP_061317849.1\|1019109_1019907_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.47479e-15
NZ_CP013247.1\|WP_061317842.1\|1011412_1012147_-\|hypothetical-protein	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.39268e-11
NZ_CP013247.1\|WP_061317841.1\|1005336_1007430_-\|transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.34931e-56
NZ_CP013247.1\|WP_061317850.1\|1020625_1021495_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.17736e-88
NZ_CP013247.1\|WP_045906294.1\|1003102_1003870_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.33605e-104
NZ_CP013247.1\|WP_061317846.1\|1015286_1016027_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|100107	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).	1.79931e-11

>NZ_CP013247.1|WP_061317842.1|1011412_1012147_-|hypothetical-protein
MDKFRNMKKSHIALLVVMYMVLMGSLPRFTGWATIFSAIAVGGYFLKNKKDLKELTKKKKNFIFTGIIILAIIGSLNVAVGNNIQNEKMMAEKAKQEQEIKQEEQKKIEEKKLAEEQKRIQEEESKKKAEEEKRKQEEEAKKKAAEEQKKQEELKRKQEEENKIKAENEQAQAAFAQSTGKGNSNDQSNESENVDNNQNYTVYKTRTGSKYHSSGCRYLKKSCYETTVSQARSEGLSPCSVCNP
>NZ_CP013247.1|WP_003485279.1|1009792_1010509_-|transaldolase
MKYNDLKIKIFADGADLNGMLDAYNKGIVKGFTTNPSLMKKAGITDYKEFAKEVLAKIKDMPVSFEVFSDDLETMEKEAEVLGNLGENVYIKIPVTNTKGESTAPLIKKLSEKGYHLNVTAIFTIDQVKEVVEALKSGVDSIVSVFAGRIADTGEDPVTIMKEASKICKTKEGVELLWASCREFYSIVEADKCGCEIITVTNDILKKMPNMGKDLKEYSIETVRGFYKDASSLGFSIL
>NZ_CP013247.1|WP_045540158.1|1009331_1009769_-|PTS-sugar-transporter-subunit-IIA
MLKNYINNQVVEVNAEVKNWEEAVRLGGKLLEKDGAVEHSYIDAMVDTVKNMGPYIVIAPGIAMPHARPEAGAKNIRIGLLKLKNPVNFGNEEHDPVDIVIFLCAVDNKAHIEVLGELVQLIEDDDFLKIVRNASTKKEILDYIK
>NZ_CP013247.1|WP_003358482.1|1009018_1009303_-|PTS-sugar-transporter-subunit-IIB
MNILTVCGNGIGSSLMLAMKIEEICKENGIAANVESTDFNSAQGKKADLIVTVKELAEQFEGRDVAVVRSYINKKKITEDVLEIIKQKDEQLKK
>NZ_CP013247.1|WP_003358211.1|1007641_1009006_-|PTS-ascorbate-transporter-subunit-IIC
MLGLLQFLRDVLKQPALLMGIMALVGLVALKKPGHKVLTGTLKPILGYLMLGAGADFIVANLEPLGGMIQTGFNITGVVPNNEAIVAVAQKVLGVETMSILVVGLLINLVIARFTKYKYVFLTGHHSFFMACLLSAVLGTSGMKGTELILFGGFLLGAWSAISPAIGQKYTLKVTDGDEIAMGHFGSLAYYVSAWVGSKVGKPEESTENIEIPEKWGFLRDTTISTAITMMVFYIVAAVAAGPEYVSKLSDGMSPILFAIMSSLKFAVGVTIVYNGVRMILGDLIPAFQGIATKIIPDAIPAVDCAVFFPYAPTAVIIGFVSSFIGGIIGMVLLGVAGGVLIIPGLVPHFFCGSTAGIFGNATGGKKGAVIGSFVNGLLITFAPALLLPVLSTLGFKNTTFGDFDFGVLGIIIGKTSNLAGKTGIIIIAMLMLVALIVPNFIKTKSKALNNIEE
>NZ_CP013247.1|WP_061317841.1|1005336_1007430_-|transcription-antiterminator
MLNKRCSNILQMIVNNEKPITIKEISKKVNKSPRTVRYDLDKIDDYLTEIEFPKLERKSNLGINLDLKDEEIKKLFKIIGKINNYDYVLSQKERVFYIIYELLNKSEFVTINMLSDRMMVSRSTIINDLIEVKKWLSENKITLESSKGQGIKILGRERDLRRAAVKLFFQSMDSINFFNVTTLKLFNDIDIDFIRNTIKIAEEQMETSFSDDAFNNLVIHIAIAIKRIELSKDIIMEREELKNLRKTAEYAIASGIAKMLEDRFKISIPEDEIGYITIHILGSNTSTLENIVKDDWIYLHLIVFKLIENVENITGINFSKDNKLFDSLAQHIRPAIYRLKHDIKVKNPLIEEIKEKYSYIFESIEEGVKFIEEDISDSVNQEEIGYLTLHFMASIERSKNKKHRKPNVLIVCATGIGTSKFISNKLKSIFDINIIDTISSHTMEKILKYNKNIDLIVTTIPLKVKGIKCIEVNTFLTEKNISELGLYFAKFIRNNSEECNSSCKYEERDKVQEILNIVKENCTIHDYYKLRNKLALYLNIKDPTLTEDHKPSLKELLKRDFIKLNEEAKDWEDAVRKSGEILMNNGCIKKSYIDAMVNTVKNMGPYIVIAPGIAMPHAAPEDGVLKTGISMLTLKDPISFGNSEHDPVSVIISICSIDKINHMKALKELMSIMDQEDFISKVKNIKASSEIDSILYS
>NZ_CP013247.1|WP_003358205.1|1004657_1005011_-|zinc-ribbon-domain-containing-protein
MIIWGWGKVTKKIIGAVFERTCNYCNTDEVWNLCVVRTWFTLFFIPIIPYKKQYCIACPKCWSYIELTQEEFEKIKIDITSSSNNINEKVVTDNIKYAGKTETQINYLKQMEEYANK
>NZ_CP013247.1|WP_045906294.1|1003102_1003870_-|ABC-transporter-ATP-binding-protein
MQNILSVEKIEKYYGNKDNVTKAIDNISFKVDEGEFVGIMGPSGSGKTTLLNCISTIDNVTTGKIIINNNDITRLKSKSLDKFRQNELGFIFQDFNLLDTLTAYENIALALTIQGEKTSKIDEKVKSVAKYLEIEKVLNKYPYQMSGGQKQRVASARAIVTNPSLILADEPTGALDSKSARLLLERFEKLNKELKATILMVTHDAFAASYAHRILFIKDGKIFNELVRGNDTRKEFFNKIIEVTSLLGGDDNNVF
>NZ_CP013247.1|WP_061318020.1|1001121_1003113_-|ABC-transporter-permease
MYSKIALKNIKKSYKDYTIYFLTLILAVCIFYSFNSIDSQKALTDIRSSGGSYVSRLMDFMSAVSVFVSIILGSLILYANNFLIKKRKKELGIYMILGMGKRKISKILVTETSIVGVISLIAGLIIGMGVSQGLSVFALKLFEVGINEYRFAVSTRAISKTILYFGIMFLLVMIFNIFVISKYKIIDLLTSGRKNENIKFKNKFIYSLSFLLCVVLLGFAYKSILKTGLKLREPMFKPSIAFVIVGTVLFFFTLAGVILYVVNKNKKIYFKGLNMFVVKQINSKVNTNFLSMSLICLMLFITILILSTGISFKNGLEEGVKIRAPFDASIIISNNSKKNNLEDVLDKINFKRSKDEKYVTCNEYLSGIKLESLLSITDKDYKDREVSFVKISDYNKILKLKGKKEINLNKDEILVMSTNNAVVKQANEKLKNSKKFNIKGKEYLVKNNKIIEENLATYLLADNVFTIVISDEFLYDYNKIVYSILNVMYSDKNREENNKKYSEINKNFVGGKYKNLNISYMGAFSKDDIYSHSKGGTTSILFVGIYLGLVFLITSMAVLALQQLSEASDSIERYKVLKRIGANSKMIEKTIFLQTLIYFALPMILALVHSMIGIKVISDYIEVFTKIDISFSALITALIFSVVYAGYFYTTYTGYKNIVKSNI
>NZ_CP013247.1|WP_061318021.1|999418_1000558_-|DOIS-domain-containing-protein
MYMNLAQKINDDYYHPEVKLETNLLESSPIYLGCNIWRESLLEKMMDLNTDKFFLITDDVVYNLFGKELLEYMNRKASVKLIKLPSGEKHKNIKVFNDLMEDLFDNNVTKSSILISLGGGVVGNITGLAAALAFRGIRFFHIPTTFMSQTDSILSRKQGINSFYGKNMIGSYYTPLFNFIDTSFLTFDSERFIRGSFVETVKNGFIYNADFLNKLKSVIKNDFNVNQEGIFNLVKMSIESKLPIMKADPTEKGLAMILEYGHTVGHAIEKLSYGKLSHGESVSIGMMVAARISEKLGYLSKQDVKEHMDILSALKTPTKIPSNIKISDIINRIKLDNKKDINGIRFVVLQNIGKCINTDGSYMIKVPFNIINDAIEETC
>NZ_CP013247.1|WP_061317843.1|1013173_1013416_-|hypothetical-protein
MSKMHVTMVACSPNEEIGSKLGRINLPCSAGNASSLLEEPISVITSLYILLYGCINNAPFSLRFDLISSFNLISLMNRCT
>NZ_CP013247.1|WP_061317844.1|1013530_1013704_+|M24-family-metallopeptidase
MNIHEAPAGFRWQYRPKETHRFEEGIVITDEPGIYIAGSHGIRIENELIVCKGENNG
>NZ_CP013247.1|WP_061317845.1|1013777_1015184_+|peptide-MFS-transporter
MSEKKQKHPIGLWLVNISIALQSYAAYAVVSILILFLTADVSKNGLGLSVPKAAAIIGLYQGINYMGSLVGGYITDKWLGIQKSLILGCFLTACGYLALFFSKPNIGSVWLGLIILIVAGAFFKAQISSLVGELYGKNELSKKDAAYSIFYMFINIGAFFGPIIAGLISDKWFAKVAADGEIAAYGYKYIFLMCTLIMIFIGIFIWIVSPKWLGEIGKYPVSKDKKTSIESVSTKSTEKAKAQPLTQLEKNRIKAMIVMFVFVIIFWSAWDQTATSFSLLANKLVNRTIGGFTMPVPWLTSINAIFCVVLSPIIANIWLKLGNSKKGDLSVPTKMGLGMILTGIAFLTLILGISTLGGVLDGSKQMNILFIIVAYFLLTVGELCLSPIGMAMFNKLAPAKYGSLAMGAWYLSFFFSSIISGKLAGFTDTLGYTQIFGLISGIVIVFGVILILLRNGLLKLMSLDELDK
>NZ_CP013247.1|WP_061317846.1|1015286_1016027_-|class-I-SAM-dependent-methyltransferase
MVNYYGSLCTTMYELLHPHAPGDELQFYLQYAKKEMKILEPLCGSGRFLVPFLERGFNITGFDMSEEMLKELYKKAPKAKVFESSIEEFSPKEKYDYIFITSGSFSLFLDEDSAFNVLVKIKEALAPKGKFVFAAETTANIIPDREEYLENCHVKTKEGYDIIFKSKSFYDKHKKILSTPSLYELYDGGNLLGKEEMDFRIKLYDFGELDKLILKAGFKRRHVFSDFNRRKSIDKNTETFLYECYI
>NZ_CP013247.1|WP_061317847.1|1016371_1016893_+|DUF4825-domain-containing-protein
MKNKFKILVPLLLILSLNLIGCGVNSERKSKENVKNSSKVETYDLIKYKGAYIGDNSSVGSIIKNLPANEYSAGFSLQTSKEPYEITINYKANENLGEENYNKFWSDKKANKLLEKNAVVLLSLIPNAEIIKFNVDSIGEESYKYDKKNLEQKYGNLKDLFKDNDSLNKFLNN
>NZ_CP013247.1|WP_061317848.1|1017004_1019002_-|FAD-dependent-oxidoreductase
MKDKYKVLYDPIKIGKLEIKNRYVLAPMGPGGMCNADGSFNERGIEFYVERAKGGTGLIMTGVTMVENSIEKCALPSMPCPTINPLNFITTGNEMTERVHAYGAKIFLQLSAGFGRVSIPSIVGKVAVAPSKIPHRFLPGVTCRELTTEEVKEYVKAFGESAEIAKKAGFDGVEIHAVHEGYLLDQFAISFFNHRTDEYGGSLENRLRFACEVVQEIKKRCGQDFPVSLRYSIKSFIKDWCKGGLPGEEFEEKGRDIPEGIEAAKMLVAAGYDALNGDVGSYDSWYWSHPPMYQKKGLYLPYNEILKNAVDVPIITAGRMEDPELSSDAILSGKTDMIALGRPLLADAEIPNKIFEDKYDKVRPCLSCQEGCMGRLQNFATVSCAVNPACGREKEYGLKKAEQIKKVLVVGGGVAGMEAARVAAVRGHKVTLIEKNGYLGGNIVPGGVPDFKDDDRALVKWYEGILKDLDVEIKLNVDVSKENIKEFGADEVLLATGSSPRTLTIEGADNVYSAEDVLMERKNVGEKVIVIGGGLVGCETALWLKQQGKEVTIVEMQNDILQVGGPLCHANHDMLIDLIKFNKIDVKTSSYISKKTDEGFVLNTNGEESIINADSAVVAIGYLSEKDLYNKVRFDIPNARLIGDANKVQNIMYAIWSAYEVAKNI
>NZ_CP013247.1|WP_061317849.1|1019109_1019907_-|MerR-family-transcriptional-regulator
MRYSITDLAEILGCTTSAIHYFEKEHLIKVEKGKNGHRYYNVVDVFRLLSYTKYRSMEIPMKTIIAQFGGEENNYKLIEEREAMYQLEALKRAQYYMNLADAIGEHLVSIRRIEELLNKYEFAKSPEVTIMCDDECGWLSKKRSSQRIIHEWVKAMPTVQLGVFDSRMGISNFGYLVKTKKREELELPLGLHTKELKSTSCIHTIVMADEDFTQHPQKVFKKASEFAIKKGLEIGEIAWGKILLVEVEKGAKLHPYIELWISIKI
>NZ_CP013247.1|WP_061317850.1|1020625_1021495_-|PhzF-family-phenazine-biosynthesis-protein
MKVKAYTLNSFAKCIEGGNPAGVVINADDLSEDNMKKVAGIIGFSETAFVMNSDLADFKVRFFTPNEEVDICGHATIATFSTLLSQGRIEPGKYFQETKAGVLSVELKEDLSIMMNQNTPSYYETICKQEIADSLNITTAEMSEELPIQIVSTGLRDILIPIKNIDMVNAIKPNFEKVSRISSKYNTIGYHIFTLESLNGSNAYCRNLAPLYGIPEESATGTSNGALACYLFKYGKIKSDNTNHIVIEQGYSMEKPSEIIVSLITEGKEVIEIKVGGKALNLSEIEVEI
>NZ_CP013247.1|WP_004451526.1|1021813_1022662_-|PhzF-family-phenazine-biosynthesis-protein
MEYFHVDVFSNEILYGNGLTVVFCNEELEDNLMLKLTQEFKQFETIFVRRIDNSIFNARIFTVDEELDFAGHPILGAAATIHSNIFRNEEDIAITFQLNQKTIIVNSKKIEEYYEVQMNQGKAEFLCEVSKEKRNKYVHALNLSEENLSEEFPMEVVSTGLPYLLVPLTSGIENAKIISSKFEEMLKEVGAKFAYIFDVNYIEGRTWDNQGNVEDVATGSAAGPLGAYLYKHNIFNVGHEIIINQGRFVGRPSKIKVSMSISEKEILVSGEVAILAKGTILL
>NZ_CP013247.1|WP_061317851.1|1023030_1023264_-|hypothetical-protein
MNQGQEKFLGFILERVEEDKVEEAKALLADNFKKQVEGNFTHDDITEFIPKMAMLLKPDKIEEVQTVMKQFAENFSH

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Crispr_ID: NZ_CP013247_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013247_1

1012440-1012668

Orphan

III-B

Consensus_repeat	Method
TATTTAAATACATCCTATGTTAAGGTTCAAC	CRT
ATTTAAATACATCCTATGTTAAGGTTCAAC	CRISPRCasFinder
ACATATTTAAATACATCCTATGTTAAGGTTCAACC	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP013247_1

>merge|NZ_CP013247|1|1012440-1012668|CRT,CRISPRCasFinder,PILER-CR
TGCTTAAATGCATCCTATGTTAATGTTCAACACTAACATTTGGTCATTTTTCCCTATACATTCACAAATTTAAATACATCCTATGTTAAGGTTCAACCTGAAAAGCCTGGTACTAAAAACGTAGTTGACGTATTTAAATACATCCTATGTTAAGGTTCAACTAGTAGGGTCTTCTTTTACTTCACTTAATTCTAAGATATTTAAATACATCCTATGTTAAGGTTCAACC

>NZ_CP013247|1|1|1012440-1012667|CRT
TGCTTAAATGCATCCTATGTTAATGTTCAAC	ACTAACATTTGGTCATTTTTCCCTATACATTCACA
AATTTAAATACATCCTATGTTAAGGTTCAAC	CTGAAAAGCCTGGTACTAAAAACGTAGTTGACG
TATTTAAATACATCCTATGTTAAGGTTCAAC	TAGTAGGGTCTTCTTTTACTTCACTTAATTCTAAGA
TATTTAAATACATCCTATGTTAAGGTTCAAC

>NZ_CP013247|1|1|1012441-1012668|CRISPRCasFinder
GCTTAAATGCATCCTATGTTAATGTTCAAC	ACTAACATTTGGTCATTTTTCCCTATACATTCACAA
ATTTAAATACATCCTATGTTAAGGTTCAAC	CTGAAAAGCCTGGTACTAAAAACGTAGTTGACGT
ATTTAAATACATCCTATGTTAAGGTTCAAC	TAGTAGGGTCTTCTTTTACTTCACTTAATTCTAAGAT
ATTTAAATACATCCTATGTTAAGGTTCAACC

>NZ_CP013247|1|1|1012503-1012668|PILER-CR
ACAAATTTAAATACATCCTATGTTAAGGTTCAACC	TGAAAAGCCTGGTACTAAAAACGTAGTTG
ACGTATTTAAATACATCCTATGTTAAGGTTCAACT	AGTAGGGTCTTCTTTTACTTCACTTAATTCTA
AGATATTTAAATACATCCTATGTTAAGGTTCAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013247.1\|WP_061318021.1\|999418_1000558_-\|DOIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341476
NZ_CP013247.1\|WP_003485279.1\|1009792_1010509_-\|transaldolase	unknown	unknown	gnl\|CDD\|183481
NZ_CP013247.1\|WP_061317844.1\|1013530_1013704_+\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|238518
NZ_CP013247.1\|WP_045540158.1\|1009331_1009769_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|182417
NZ_CP013247.1\|WP_003358482.1\|1009018_1009303_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP013247.1\|WP_003358205.1\|1004657_1005011_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|379915
NZ_CP013247.1\|WP_061317847.1\|1016371_1016893_+\|DUF4825-domain-containing-protein	unknown	unknown	gnl\|CDD\|379767
NZ_CP013247.1\|WP_061317845.1\|1013777_1015184_+\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|340904
NZ_CP013247.1\|WP_061318020.1\|1001121_1003113_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376899
NZ_CP013247.1\|WP_072570629.1\|1013003_1013183_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061317848.1\|1017004_1019002_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239241
NZ_CP013247.1\|WP_004451526.1\|1021813_1022662_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP013247.1\|WP_003358211.1\|1007641_1009006_-\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
NZ_CP013247.1\|WP_061317849.1\|1019109_1019907_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133378
NZ_CP013247.1\|WP_061317842.1\|1011412_1012147_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236545
NZ_CP013247.1\|WP_061317841.1\|1005336_1007430_-\|transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP013247.1\|WP_061317843.1\|1013173_1013416_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061317850.1\|1020625_1021495_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP013247.1\|WP_045906294.1\|1003102_1003870_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP013247.1\|WP_061317846.1\|1015286_1016027_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|100107

Protein	Function_ID	Function_description	E-value
NZ_CP013247.1\|WP_061318021.1\|999418_1000558_-\|DOIS-domain-containing-protein	gnl\|CDD\|341476	cd08197, DOIS, 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homolog of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.	1.73999e-153
NZ_CP013247.1\|WP_003485279.1\|1009792_1010509_-\|transaldolase	gnl\|CDD\|183481	PRK12376, PRK12376, putative translaldolase; Provisional.	6.47741e-157
NZ_CP013247.1\|WP_061317844.1\|1013530_1013704_+\|M24-family-metallopeptidase	gnl\|CDD\|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	7.33995e-13
NZ_CP013247.1\|WP_045540158.1\|1009331_1009769_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|182417	PRK10372, PRK10372, PTS ascorbate transporter subunit IIA.	4.73815e-38
NZ_CP013247.1\|WP_003358482.1\|1009018_1009303_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	1.57443e-28
NZ_CP013247.1\|WP_003358205.1\|1004657_1005011_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|379915	pfam17032, zinc_ribbon_15, zinc-ribbon family. This zinc-ribbon region is found on a set of largely microsporidia-specific proteins.	0.000168002
NZ_CP013247.1\|WP_061317847.1\|1016371_1016893_+\|DUF4825-domain-containing-protein	gnl\|CDD\|379767	pfam16107, DUF4825, Domain of unknown function (DUF4825). This domain forms the N-terminal, extracellular domain of some homologs of Staph BlaR1 proteases, where it replaces the penicillin-binding domain of BlaR1. It is also found in many uncharacterized proteins in a broad range of bacteria. Its association with BlaR1 homologs suggests it may be involved in substrate-, possibly antibiotic-binding, but this prediction has not been verified experimentally.	1.23442e-25
NZ_CP013247.1\|WP_061318020.1\|1001121_1003113_-\|ABC-transporter-permease	gnl\|CDD\|376899	pfam02687, FtsX, FtsX-like permease family. This is a family of predicted permeases and hypothetical transmembrane proteins. Buchnera aphidicola LolC has been shown to transport lipids targeted to the outer membrane across the inner membrane. Both LolC and Streptococcus cristatus TptD have been shown to require ATP. This region contains three transmembrane helices.	0.000529996
NZ_CP013247.1\|WP_061317845.1\|1013777_1015184_+\|peptide-MFS-transporter	gnl\|CDD\|340904	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters. The DtpA-like subfamily includes four Escherichia coli proteins: dipeptide and tripeptide permeases A (DtpA, TppB or YdgR), B (DtpB or YhiP), C (DtpC or YjdL), and D (DtpD or YbgH). They are proton-dependent permeases that transport di- and tripeptides. DtpA and DtpB display a preference for di- and tripeptides composed of L-amino acids. DtpC shows higher specificity for dipeptides compared to tripeptides, and prefers dipeptides containing a C-terminal lysine residue. The DtpA-like subfamily belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.9059e-120
NZ_CP013247.1\|WP_061317848.1\|1017004_1019002_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|239241	cd02931, ER_like_FMN, Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.	0
NZ_CP013247.1\|WP_004451526.1\|1021813_1022662_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	3.39603e-61
NZ_CP013247.1\|WP_003358211.1\|1007641_1009006_-\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
NZ_CP013247.1\|WP_061317849.1\|1019109_1019907_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133378	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	3.47479e-15
NZ_CP013247.1\|WP_061317842.1\|1011412_1012147_-\|hypothetical-protein	gnl\|CDD\|236545	PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional.	1.39268e-11
NZ_CP013247.1\|WP_061317841.1\|1005336_1007430_-\|transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.34931e-56
NZ_CP013247.1\|WP_061317850.1\|1020625_1021495_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.17736e-88
NZ_CP013247.1\|WP_045906294.1\|1003102_1003870_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	1.33605e-104
NZ_CP013247.1\|WP_061317846.1\|1015286_1016027_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|100107	cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).	1.79931e-11

>NZ_CP013247.1|WP_061317842.1|1011412_1012147_-|hypothetical-protein
MDKFRNMKKSHIALLVVMYMVLMGSLPRFTGWATIFSAIAVGGYFLKNKKDLKELTKKKKNFIFTGIIILAIIGSLNVAVGNNIQNEKMMAEKAKQEQEIKQEEQKKIEEKKLAEEQKRIQEEESKKKAEEEKRKQEEEAKKKAAEEQKKQEELKRKQEEENKIKAENEQAQAAFAQSTGKGNSNDQSNESENVDNNQNYTVYKTRTGSKYHSSGCRYLKKSCYETTVSQARSEGLSPCSVCNP
>NZ_CP013247.1|WP_003485279.1|1009792_1010509_-|transaldolase
MKYNDLKIKIFADGADLNGMLDAYNKGIVKGFTTNPSLMKKAGITDYKEFAKEVLAKIKDMPVSFEVFSDDLETMEKEAEVLGNLGENVYIKIPVTNTKGESTAPLIKKLSEKGYHLNVTAIFTIDQVKEVVEALKSGVDSIVSVFAGRIADTGEDPVTIMKEASKICKTKEGVELLWASCREFYSIVEADKCGCEIITVTNDILKKMPNMGKDLKEYSIETVRGFYKDASSLGFSIL
>NZ_CP013247.1|WP_045540158.1|1009331_1009769_-|PTS-sugar-transporter-subunit-IIA
MLKNYINNQVVEVNAEVKNWEEAVRLGGKLLEKDGAVEHSYIDAMVDTVKNMGPYIVIAPGIAMPHARPEAGAKNIRIGLLKLKNPVNFGNEEHDPVDIVIFLCAVDNKAHIEVLGELVQLIEDDDFLKIVRNASTKKEILDYIK
>NZ_CP013247.1|WP_003358482.1|1009018_1009303_-|PTS-sugar-transporter-subunit-IIB
MNILTVCGNGIGSSLMLAMKIEEICKENGIAANVESTDFNSAQGKKADLIVTVKELAEQFEGRDVAVVRSYINKKKITEDVLEIIKQKDEQLKK
>NZ_CP013247.1|WP_003358211.1|1007641_1009006_-|PTS-ascorbate-transporter-subunit-IIC
MLGLLQFLRDVLKQPALLMGIMALVGLVALKKPGHKVLTGTLKPILGYLMLGAGADFIVANLEPLGGMIQTGFNITGVVPNNEAIVAVAQKVLGVETMSILVVGLLINLVIARFTKYKYVFLTGHHSFFMACLLSAVLGTSGMKGTELILFGGFLLGAWSAISPAIGQKYTLKVTDGDEIAMGHFGSLAYYVSAWVGSKVGKPEESTENIEIPEKWGFLRDTTISTAITMMVFYIVAAVAAGPEYVSKLSDGMSPILFAIMSSLKFAVGVTIVYNGVRMILGDLIPAFQGIATKIIPDAIPAVDCAVFFPYAPTAVIIGFVSSFIGGIIGMVLLGVAGGVLIIPGLVPHFFCGSTAGIFGNATGGKKGAVIGSFVNGLLITFAPALLLPVLSTLGFKNTTFGDFDFGVLGIIIGKTSNLAGKTGIIIIAMLMLVALIVPNFIKTKSKALNNIEE
>NZ_CP013247.1|WP_061317841.1|1005336_1007430_-|transcription-antiterminator
MLNKRCSNILQMIVNNEKPITIKEISKKVNKSPRTVRYDLDKIDDYLTEIEFPKLERKSNLGINLDLKDEEIKKLFKIIGKINNYDYVLSQKERVFYIIYELLNKSEFVTINMLSDRMMVSRSTIINDLIEVKKWLSENKITLESSKGQGIKILGRERDLRRAAVKLFFQSMDSINFFNVTTLKLFNDIDIDFIRNTIKIAEEQMETSFSDDAFNNLVIHIAIAIKRIELSKDIIMEREELKNLRKTAEYAIASGIAKMLEDRFKISIPEDEIGYITIHILGSNTSTLENIVKDDWIYLHLIVFKLIENVENITGINFSKDNKLFDSLAQHIRPAIYRLKHDIKVKNPLIEEIKEKYSYIFESIEEGVKFIEEDISDSVNQEEIGYLTLHFMASIERSKNKKHRKPNVLIVCATGIGTSKFISNKLKSIFDINIIDTISSHTMEKILKYNKNIDLIVTTIPLKVKGIKCIEVNTFLTEKNISELGLYFAKFIRNNSEECNSSCKYEERDKVQEILNIVKENCTIHDYYKLRNKLALYLNIKDPTLTEDHKPSLKELLKRDFIKLNEEAKDWEDAVRKSGEILMNNGCIKKSYIDAMVNTVKNMGPYIVIAPGIAMPHAAPEDGVLKTGISMLTLKDPISFGNSEHDPVSVIISICSIDKINHMKALKELMSIMDQEDFISKVKNIKASSEIDSILYS
>NZ_CP013247.1|WP_003358205.1|1004657_1005011_-|zinc-ribbon-domain-containing-protein
MIIWGWGKVTKKIIGAVFERTCNYCNTDEVWNLCVVRTWFTLFFIPIIPYKKQYCIACPKCWSYIELTQEEFEKIKIDITSSSNNINEKVVTDNIKYAGKTETQINYLKQMEEYANK
>NZ_CP013247.1|WP_045906294.1|1003102_1003870_-|ABC-transporter-ATP-binding-protein
MQNILSVEKIEKYYGNKDNVTKAIDNISFKVDEGEFVGIMGPSGSGKTTLLNCISTIDNVTTGKIIINNNDITRLKSKSLDKFRQNELGFIFQDFNLLDTLTAYENIALALTIQGEKTSKIDEKVKSVAKYLEIEKVLNKYPYQMSGGQKQRVASARAIVTNPSLILADEPTGALDSKSARLLLERFEKLNKELKATILMVTHDAFAASYAHRILFIKDGKIFNELVRGNDTRKEFFNKIIEVTSLLGGDDNNVF
>NZ_CP013247.1|WP_061318020.1|1001121_1003113_-|ABC-transporter-permease
MYSKIALKNIKKSYKDYTIYFLTLILAVCIFYSFNSIDSQKALTDIRSSGGSYVSRLMDFMSAVSVFVSIILGSLILYANNFLIKKRKKELGIYMILGMGKRKISKILVTETSIVGVISLIAGLIIGMGVSQGLSVFALKLFEVGINEYRFAVSTRAISKTILYFGIMFLLVMIFNIFVISKYKIIDLLTSGRKNENIKFKNKFIYSLSFLLCVVLLGFAYKSILKTGLKLREPMFKPSIAFVIVGTVLFFFTLAGVILYVVNKNKKIYFKGLNMFVVKQINSKVNTNFLSMSLICLMLFITILILSTGISFKNGLEEGVKIRAPFDASIIISNNSKKNNLEDVLDKINFKRSKDEKYVTCNEYLSGIKLESLLSITDKDYKDREVSFVKISDYNKILKLKGKKEINLNKDEILVMSTNNAVVKQANEKLKNSKKFNIKGKEYLVKNNKIIEENLATYLLADNVFTIVISDEFLYDYNKIVYSILNVMYSDKNREENNKKYSEINKNFVGGKYKNLNISYMGAFSKDDIYSHSKGGTTSILFVGIYLGLVFLITSMAVLALQQLSEASDSIERYKVLKRIGANSKMIEKTIFLQTLIYFALPMILALVHSMIGIKVISDYIEVFTKIDISFSALITALIFSVVYAGYFYTTYTGYKNIVKSNI
>NZ_CP013247.1|WP_061318021.1|999418_1000558_-|DOIS-domain-containing-protein
MYMNLAQKINDDYYHPEVKLETNLLESSPIYLGCNIWRESLLEKMMDLNTDKFFLITDDVVYNLFGKELLEYMNRKASVKLIKLPSGEKHKNIKVFNDLMEDLFDNNVTKSSILISLGGGVVGNITGLAAALAFRGIRFFHIPTTFMSQTDSILSRKQGINSFYGKNMIGSYYTPLFNFIDTSFLTFDSERFIRGSFVETVKNGFIYNADFLNKLKSVIKNDFNVNQEGIFNLVKMSIESKLPIMKADPTEKGLAMILEYGHTVGHAIEKLSYGKLSHGESVSIGMMVAARISEKLGYLSKQDVKEHMDILSALKTPTKIPSNIKISDIINRIKLDNKKDINGIRFVVLQNIGKCINTDGSYMIKVPFNIINDAIEETC
>NZ_CP013247.1|WP_072570629.1|1013003_1013183_-|hypothetical-protein
MHLIHCNNNKISGKNSIWFPRMLRVHLISSSELTSLATKVKGVLELSERFLTTVAFVEQ
>NZ_CP013247.1|WP_061317843.1|1013173_1013416_-|hypothetical-protein
MSKMHVTMVACSPNEEIGSKLGRINLPCSAGNASSLLEEPISVITSLYILLYGCINNAPFSLRFDLISSFNLISLMNRCT
>NZ_CP013247.1|WP_061317844.1|1013530_1013704_+|M24-family-metallopeptidase
MNIHEAPAGFRWQYRPKETHRFEEGIVITDEPGIYIAGSHGIRIENELIVCKGENNG
>NZ_CP013247.1|WP_061317845.1|1013777_1015184_+|peptide-MFS-transporter
MSEKKQKHPIGLWLVNISIALQSYAAYAVVSILILFLTADVSKNGLGLSVPKAAAIIGLYQGINYMGSLVGGYITDKWLGIQKSLILGCFLTACGYLALFFSKPNIGSVWLGLIILIVAGAFFKAQISSLVGELYGKNELSKKDAAYSIFYMFINIGAFFGPIIAGLISDKWFAKVAADGEIAAYGYKYIFLMCTLIMIFIGIFIWIVSPKWLGEIGKYPVSKDKKTSIESVSTKSTEKAKAQPLTQLEKNRIKAMIVMFVFVIIFWSAWDQTATSFSLLANKLVNRTIGGFTMPVPWLTSINAIFCVVLSPIIANIWLKLGNSKKGDLSVPTKMGLGMILTGIAFLTLILGISTLGGVLDGSKQMNILFIIVAYFLLTVGELCLSPIGMAMFNKLAPAKYGSLAMGAWYLSFFFSSIISGKLAGFTDTLGYTQIFGLISGIVIVFGVILILLRNGLLKLMSLDELDK
>NZ_CP013247.1|WP_061317846.1|1015286_1016027_-|class-I-SAM-dependent-methyltransferase
MVNYYGSLCTTMYELLHPHAPGDELQFYLQYAKKEMKILEPLCGSGRFLVPFLERGFNITGFDMSEEMLKELYKKAPKAKVFESSIEEFSPKEKYDYIFITSGSFSLFLDEDSAFNVLVKIKEALAPKGKFVFAAETTANIIPDREEYLENCHVKTKEGYDIIFKSKSFYDKHKKILSTPSLYELYDGGNLLGKEEMDFRIKLYDFGELDKLILKAGFKRRHVFSDFNRRKSIDKNTETFLYECYI
>NZ_CP013247.1|WP_061317847.1|1016371_1016893_+|DUF4825-domain-containing-protein
MKNKFKILVPLLLILSLNLIGCGVNSERKSKENVKNSSKVETYDLIKYKGAYIGDNSSVGSIIKNLPANEYSAGFSLQTSKEPYEITINYKANENLGEENYNKFWSDKKANKLLEKNAVVLLSLIPNAEIIKFNVDSIGEESYKYDKKNLEQKYGNLKDLFKDNDSLNKFLNN
>NZ_CP013247.1|WP_061317848.1|1017004_1019002_-|FAD-dependent-oxidoreductase
MKDKYKVLYDPIKIGKLEIKNRYVLAPMGPGGMCNADGSFNERGIEFYVERAKGGTGLIMTGVTMVENSIEKCALPSMPCPTINPLNFITTGNEMTERVHAYGAKIFLQLSAGFGRVSIPSIVGKVAVAPSKIPHRFLPGVTCRELTTEEVKEYVKAFGESAEIAKKAGFDGVEIHAVHEGYLLDQFAISFFNHRTDEYGGSLENRLRFACEVVQEIKKRCGQDFPVSLRYSIKSFIKDWCKGGLPGEEFEEKGRDIPEGIEAAKMLVAAGYDALNGDVGSYDSWYWSHPPMYQKKGLYLPYNEILKNAVDVPIITAGRMEDPELSSDAILSGKTDMIALGRPLLADAEIPNKIFEDKYDKVRPCLSCQEGCMGRLQNFATVSCAVNPACGREKEYGLKKAEQIKKVLVVGGGVAGMEAARVAAVRGHKVTLIEKNGYLGGNIVPGGVPDFKDDDRALVKWYEGILKDLDVEIKLNVDVSKENIKEFGADEVLLATGSSPRTLTIEGADNVYSAEDVLMERKNVGEKVIVIGGGLVGCETALWLKQQGKEVTIVEMQNDILQVGGPLCHANHDMLIDLIKFNKIDVKTSSYISKKTDEGFVLNTNGEESIINADSAVVAIGYLSEKDLYNKVRFDIPNARLIGDANKVQNIMYAIWSAYEVAKNI
>NZ_CP013247.1|WP_061317849.1|1019109_1019907_-|MerR-family-transcriptional-regulator
MRYSITDLAEILGCTTSAIHYFEKEHLIKVEKGKNGHRYYNVVDVFRLLSYTKYRSMEIPMKTIIAQFGGEENNYKLIEEREAMYQLEALKRAQYYMNLADAIGEHLVSIRRIEELLNKYEFAKSPEVTIMCDDECGWLSKKRSSQRIIHEWVKAMPTVQLGVFDSRMGISNFGYLVKTKKREELELPLGLHTKELKSTSCIHTIVMADEDFTQHPQKVFKKASEFAIKKGLEIGEIAWGKILLVEVEKGAKLHPYIELWISIKI
>NZ_CP013247.1|WP_061317850.1|1020625_1021495_-|PhzF-family-phenazine-biosynthesis-protein
MKVKAYTLNSFAKCIEGGNPAGVVINADDLSEDNMKKVAGIIGFSETAFVMNSDLADFKVRFFTPNEEVDICGHATIATFSTLLSQGRIEPGKYFQETKAGVLSVELKEDLSIMMNQNTPSYYETICKQEIADSLNITTAEMSEELPIQIVSTGLRDILIPIKNIDMVNAIKPNFEKVSRISSKYNTIGYHIFTLESLNGSNAYCRNLAPLYGIPEESATGTSNGALACYLFKYGKIKSDNTNHIVIEQGYSMEKPSEIIVSLITEGKEVIEIKVGGKALNLSEIEVEI
>NZ_CP013247.1|WP_004451526.1|1021813_1022662_-|PhzF-family-phenazine-biosynthesis-protein
MEYFHVDVFSNEILYGNGLTVVFCNEELEDNLMLKLTQEFKQFETIFVRRIDNSIFNARIFTVDEELDFAGHPILGAAATIHSNIFRNEEDIAITFQLNQKTIIVNSKKIEEYYEVQMNQGKAEFLCEVSKEKRNKYVHALNLSEENLSEEFPMEVVSTGLPYLLVPLTSGIENAKIISSKFEEMLKEVGAKFAYIFDVNYIEGRTWDNQGNVEDVATGSAAGPLGAYLYKHNIFNVGHEIIINQGRFVGRPSKIKVSMSISEKEILVSGEVAILAKGTILL

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Crispr_ID: NZ_CP013247_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013247_3

1842972-1843042

Orphan

Consensus_repeat	Method
TATTATTTTCAATAAAAAATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013247_3

>merge|NZ_CP013247|3|1842972-1843042|CRISPRCasFinder
TATTATTTTCAATAAAAAATAAATTAGTTCTAACAATATTGGTTGTAATATTTTTTTCAATAAAAAATAAA

>NZ_CP013247|3|3|1842972-1843042|CRISPRCasFinder
TATTATTTTCAATAAAAAATAAA	TTAGTTCTAACAATATTGGTTGTAA
TATTTTTTTCAATAAAAAATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013247.1\|WP_003357959.1\|1834844_1835039_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_003357831.1\|1848018_1848360_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061319092.1\|1840823_1841822_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061319093.1\|1841833_1842109_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061319087.1\|1835464_1836253_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061319091.1\|1839726_1840812_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061319096.1\|1845666_1846662_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061319098.1\|1848372_1849458_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_003483832.1\|1851596_1851839_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061319097.1\|1846663_1848004_-\|caspase-family-protein	unknown	unknown	gnl\|CDD\|334197
NZ_CP013247.1\|WP_061319099.1\|1849444_1849879_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061319101.1\|1852229_1853117_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379073
NZ_CP013247.1\|WP_061319095.1\|1844144_1845653_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061319100.1\|1849891_1851433_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227699
NZ_CP013247.1\|WP_061319089.1\|1837994_1838774_-\|discoidin-domain-containing-protein	unknown	unknown	gnl\|CDD\|366285
NZ_CP013247.1\|WP_003357967.1\|1851798_1852215_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061319090.1\|1838776_1839694_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_003358009.1\|1835057_1835312_-\|hemolysin-XhlA-family-protein	unknown	unknown	gnl\|CDD\|371241
NZ_CP013247.1\|WP_061319088.1\|1837175_1837943_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_003360045.1\|1836285_1837110_-\|discoidin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369494

Protein	Function_ID	Function_description	E-value
NZ_CP013247.1\|WP_061319101.1\|1852229_1853117_-\|hypothetical-protein	gnl\|CDD\|379073	pfam13205, Big_5, Bacterial Ig-like domain.	0.00889832
NZ_CP013247.1\|WP_003360045.1\|1836285_1837110_-\|discoidin-domain-containing-protein	gnl\|CDD\|369494	pfam07738, Sad1_UNC, Sad1 / UNC-like C-terminal. The C. elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localizes at the spindle pole body. UNC-84 and and Sad1 share a common C-terminal region, that is often termed the SUN (Sad1 and UNC) domain. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2. The SUN domain of Sun2 has been demonstrated to be in the periplasm.	1.05313e-05
NZ_CP013247.1\|WP_061319100.1\|1849891_1851433_-\|hypothetical-protein	gnl\|CDD\|227699	COG5412, COG5412, Phage-related protein [Function unknown].	4.08059e-11
NZ_CP013247.1\|WP_061319089.1\|1837994_1838774_-\|discoidin-domain-containing-protein	gnl\|CDD\|366285	pfam00754, F5_F8_type_C, F5/8 type C domain. This domain is also known as the discoidin (DS) domain family.	3.37673e-10
NZ_CP013247.1\|WP_003358009.1\|1835057_1835312_-\|hemolysin-XhlA-family-protein	gnl\|CDD\|371241	pfam10779, XhlA, Haemolysin XhlA. XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes. This family has had DUF1267, pfam06895, merged into it.	1.73256e-18
NZ_CP013247.1\|WP_061319097.1\|1846663_1848004_-\|caspase-family-protein	gnl\|CDD\|334197	pfam00656, Peptidase_C14, Caspase domain.	3.25033e-13

>NZ_CP013247.1|WP_061319093.1|1841833_1842109_-|hypothetical-protein
MAYGRNEFGYYEEYQAVASSNQGSFNNPRQKMWMVQRRGYYAWEIELITNSFEDAKNKARFLLDCGGEYMNINRVMVSEIVPMDNVITPSV
>NZ_CP013247.1|WP_061319092.1|1840823_1841822_-|hypothetical-protein
MKLIQVKNGLLEAENFFLASSFSDFAGESNVTRDIKAGKLKLISNNKMERKFDYKEFVLEVEKENFNDIKDMDYSMLYLGNGDYIFGIKDLKSNEQNKYWKILKKDNYIQAYSSNDGKNYTNIGGMEFVEPLTKQGFMKYSDEDFILNNYKVYANPYVTIQNFPENTLCELYDFDNNLIKTRLFNSDMECKVFIDSNMSGYFIFKDRDGKVIYTSDVLQLQYGDMWVFSPYNFEIIYHGNVVTNVSPAMLKDLEELITIKNIGDKDYNNIKIGTETPSNDLIQLSFDGINYADSLTIDSIKQSESKGIYVKITKNAENHNFVIRDFHLVISE
>NZ_CP013247.1|WP_061319091.1|1839726_1840812_-|hypothetical-protein
MSEFFNVTLDKDIVLDDSVISNKTGWSSEKIQKEIIDKRITKFEELEDVDVTNKKNKQLVAYSEETGKFTTIDGIDAGEIVGAGMKQISKMGIVGSAETPRIVNIPVNTVDFKVPRVNVLRYDTENTLDLIAVKNEFTNDESNDFIYDKMMTFDGKAHLETNNISDFEVVQDTESFTEYSVNVDKTLFKKIEGFETFEDGVIQKLKTKAIPFDRLLIPKGDMNLSNVDHIDYFRLTANGNNIRIVCSVDSGNTWKTFSGEKWVNVNLTVDDVRKNGMNIDIFNAINDVFWNELVTTKKIRFAYLFGMDSITDIEEIDKLDLQYDGVGRWKQVKEDLYEVIYASNTLLQVECKFSGDIKINY
>NZ_CP013247.1|WP_061319090.1|1838776_1839694_-|hypothetical-protein
MGIIFQDAFDTGVVLDKNKWEINTLNGYDVILENGKLKFSATGSWCGAYVHPRVKINKNKIGPKGLSIEFDYTIGNHYSSADKPYVGFYNASKTPIRDNRYNMIQCDGINSFLIYLADNSDSSKRTKFSMAYTNKLLKTVSVNYSVGEILHIKLLLNKNKKNISMFIDNEEAPLLVCDIPNWDSLGEELIFEINSNSYSRFVEYYDNFIIKNIAEYRYLLEQDNQYYSLKSQFYKGGQFQPITELNEKETLIQSDFETYGIDDLNSLTKTIDTQVINGIDKGNLGSGKLFEIPFNNDFLNISEVE
>NZ_CP013247.1|WP_061319089.1|1837994_1838774_-|discoidin-domain-containing-protein
MAKYTENLIPKMTSDSVNGITVSASSDYGNIFKAWNAFDRDSNKYWVAGHSISAGWLKVNFGINNEREISKYTIKHFNNAPYINSAPRDWSFEGSNDNINWNILDVRNNEINWNLNEQREYTFKNFNKYQYYRLNISRNNGSQYVSIDEIEMMESININKYLIKEKNQYYTIDNIEIILSPSQTLDEDNFNNNGFNDIDILTKDLLLSKFKNLEEVKLLVYTDDLEKNKCEMIYNCEPFRPIDVLKKNSDYCKVLFKEV
>NZ_CP013247.1|WP_061319088.1|1837175_1837943_-|hypothetical-protein
MYYYMLKIDNIYPSPYNICMISKIQTSTTNTELKYVSVDSYEYTGDGTGAFQEDAGNRRWQTNRSSSFPHYIIFSSNKLLNDIIIKTGSKSEGGFSAKNFSLYISNEKLSYSSTAWNKLFEGTFDNNDNDQFFILQKFKYLIRQNENYYSINNSYINLGQVDADDELNDLLDNYGYDDLSFIINKELDNKLIPTKLKDTGYYESFDINLNDVKDNIMLFQENDKKYIQYNCDPYKILDEIKKINDGKFGIVMKKE
>NZ_CP013247.1|WP_003360045.1|1836285_1837110_-|discoidin-domain-containing-protein
MEIKYTENLIPKMTSNTTPIGKCKASTTYGTTWEAWKAFNDTCVDGDDCWATTNKNSWLSYEFLEPIIINKYSICPRNSGDFNTASPKNWSFEGSNNGLDWEKLDTRKDITNWQLMRNNEFIFNNNIPYKIYKINIFDNNGGHYLCIGKLCMMSKVTYNKYLIKQNSNYYSINNNYIDLGKIDNSEELNNIIDEYGYNDISILTKELNSKKIPTKLEKDYYKSFDINLNDIKYNINLIEENDKKYIEYGCSNYKISDEIKKINNSKFEVLMKII
>NZ_CP013247.1|WP_061319087.1|1835464_1836253_-|hypothetical-protein
MSGIAKPNIKKLGKEGKITFLFYNDENRFDKIETLFDGNLNTHTGYGVLLSPTNSDRKIIFELHQKSNIWAYGQKYTDGGGSTPKPVSLYEKSNNDEDFKLIQSNIPTKDNEWYLLANNLEKGIYKMTYTSAYTMFTEWYVEDINPYRCLINQNLNYYSTKSNFINLGQPIDNTQLENWYNKYGADDVNIITQNLNNKEFPMSKSENGIWKTEFQLDMNDVTDNIELVDIDENNKSIKYNCNDYRILDLCDDQFKLTMCKTK
>NZ_CP013247.1|WP_003358009.1|1835057_1835312_-|hemolysin-XhlA-family-protein
MELKVCEEKHKRLEEKINVHDIRLNDHGKRIDKIEQNQSKIDTKIENLCDQLKQLVSVLKWYIGLSVGALVSFFFYAIQHNIFK
>NZ_CP013247.1|WP_003357959.1|1834844_1835039_-|hypothetical-protein
MEFLKKFLQIKKIIALLTTIVFCYLSIKGSLSSTEFLSVFTLIIGFYFGQSSARQAVKESKEQE
>NZ_CP013247.1|WP_061319095.1|1844144_1845653_-|hypothetical-protein
MTTDNFYCVNGNTSVKDIIKNLTKEITQSAGIYKWDLVSPSAIDKVRNFSLIKATTSYGKEFYIRFERTAALTPTSEEQKLLDKERYSKPFTEQEITLLNRYVEAMPLTSFEKNLIKKNLDSLTTDEQNDLQQLRVRKNITNDRELFLLRKYYNGESLSTAEQNELDTYRNAHNLTAQELIDWSKLKTNTKLYADSIINILYKQYAGSVLSQSEQNSLASYRNSMELTQSEKEKLAMLKGKMDNRNHMYITIGKEIHDTKKIVEVDGEQTEVDIKDLVEESCSVPSRFAWYKKLAPEIGEWLPIEYYINITKDAVNIMLEGDKSADNYPYNNNLTSYAYIGAIKPMEDSASTDDKYNFGVVTSSDIPPFFTKKFGERTATGITDVCMVGNKIGMPMQPHYPEFSTTTTFVDKCNTEGSRWNHKKHKFDEIILFHPVDGERGKLINVLAGDGNGIWNKDTLVYKKDTEEEENYKKFKITAPYSLMNNSPNPLYCIAIRWYKSE
>NZ_CP013247.1|WP_061319096.1|1845666_1846662_-|hypothetical-protein
MSLPKYIINFEELTEDLKNHLLSLIDDNIRTNYPEINTNNIQDLLQQLKDLLPSVQYEGLKKKIDTFIYRKIEGIQKVKGILLDIPAVQNDYKEQFKFDKDVYITGLHFNQTGWKKEDKYSLEINKIKIIANATIKEIGEHKYFNTFYKVNANTPISFVFHNLSGNSRQIIVDLEYIDGEDSNIPVEQPGIEDIDNEWDIAVVMNWEENTDADIDLYGEIGDKEVWYGNKSYDGFYLNFDYTSHKTNKNPEIISVKGYKNKKLNIYVHNYNARELKEPVTLEIYQNRSYGNKLLKKFSVNLEADDSYIKGVFTIDLNTLKITKLNKNKKKY
>NZ_CP013247.1|WP_061319097.1|1846663_1848004_-|caspase-family-protein
MGLPSYVVNFDELSDLIKDYLQNGVKVDIGNINFSTKDMENLLSEIKDKIQGVDYNDLINALNALGVKLDNLSGNLGISGTQKIYGKMLEIPAVKGQHIIEFKGNGQITGITYSQSSWRFEDSWDLQVGNDKLFESVRTKEYGEHKFLNVFYPINGTVKFIYNNISGTSKVLWVDFNILENSNLPTPTIPTTSEKNYRFLAIGESEYTLQGANNLMGCTYDADNMSNLFKEHKQSAKFTKNIVAKNKTKSEALNLIKNTFQDAQDNDISYLFWSGHGTVYEDKFALVAKDNIITVYELQTILDDIKGTKVIFIDTCHSGLAIDKNFAYTLAVVEEKLRSIDKTLNKQGYKVLTASAGSETSGDLSAGYNGNPNPSGAFTWALTQSIKTKKSDKDKNRIVTLEELYQSVLHFYDEFNIKNPYLKITQTAQVYPRNDTSSIFEYKEGA
>NZ_CP013247.1|WP_003357831.1|1848018_1848360_-|hypothetical-protein
MAHMGYKNFREPVVYILDQELRKRNFKNQINTNEDSKYTGELPEYPCRIIRDSNNKAYKFIYASGTDMQWQEELIRNAEGKVYRIKTTYPNNTNKTIQLIKDNHGKLETIDYV
>NZ_CP013247.1|WP_061319098.1|1848372_1849458_-|hypothetical-protein
MTKCKVELYKKNGYQAFENGDANKIILEHCLVSVKINRTLTTPTAEATITAQYENLPTAIFAGGTQGVIDNFAQVKIYIEDVLQFTGVIKKYDYNTLDKTIEMTCHDMYYRMLNLCDKELKFYNKTAADIISTVVSDAKCSFQRSGGNNYTVPKLECEIGTMYNDIIGNLVETMYARIRANKNGAIILEEQYPAYNESNHEANHHDYVLSVDTNLSSETASRDSSLMRNILKICCNDKYSIFESKAMTSYLNGERWVDIIDNPLASTSLLKQKVAGYKFLDMWRESTALNVVPVAGIPNIDLGQVVKLVNNQRGNGWYLIVGISTEINADTYVDTLQLQGMRDKTKVYDQCIQIGSGRLKQ
>NZ_CP013247.1|WP_061319099.1|1849444_1849879_-|hypothetical-protein
MDLNRIKDFKVDLLYEDGKNTGGVITNYKPPRPAYFRKGIRTVQGYTYFEKNIKSDCIIEFTVAFNIKGENDEETQSNIAKFLDFRKSYSGRFIFVDEFGIQYKGYLQNKFEIDTPIEGDIYYINLELLCNHEASGWVKDNDKV
>NZ_CP013247.1|WP_061319100.1|1849891_1851433_-|hypothetical-protein
MAVNVGEAVAHLTLDTSEFKKALNGAGKDLEIFVHKVEKEKTRIEKLQEALAKEAGTLSKIGKSMEKPSAAAQNLLKTGMKNTLAEEAKSKNPKKGPANIAKGNYDKIQKDIQASIKKVQDSFAQLQTSIVKQLIPIFNNQLVPILNNKLIPIFTKLANKAVELMNSFNKLPNPVKNAIAIIIVSIAGVAKTFTVLSKVVSTINNVIGVFGKLKKAAGIFKVMRTLITPHTLIIVAAIAAIGFIVYEVIRHWDTLKKYATRFGNFIANIFRSIGRVINSIIQGAIHAFQGFIRILQWVGGMVHNIINGCIAIFRGVGTILHGIVQGWINIFRGLGNLAGALFNIGRNIVEGLINGIRAMFGRVVQVIGNLASEISSRFRKLLGINSPSRVFADYGNFIGEGLIQGIDNQESAINNKFKGIANKIKGLGNVRPNFNGLNNMSLSGAYGGTYASPYGPNNMNKSMGLTQDIKMYVTIPNADKEGANKIANEFKQMTESSMKNVMTGLFMNDVLRD
>NZ_CP013247.1|WP_003483832.1|1851596_1851839_-|hypothetical-protein
MKSQRILSVISISKQYRQRPSEIIGLTNDYEAFCFDEACVYILNEISKEDAREPKFIDGDRTNKTNNEDVIQWLNANNKS
>NZ_CP013247.1|WP_003357967.1|1851798_1852215_-|hypothetical-protein
MDLKVTNIEDLKKVAQGEVIQLPQFGQGIPFNARVKRVSLLNLVRKGVVPNKLLSAAEELFYGKQSSKENVDLTQMTDVMYIMAENALVEPSIEDLKSVELELTDEQIVALFNYTQEGVSELDSFREESENTECNINK
>NZ_CP013247.1|WP_061319101.1|1852229_1853117_-|hypothetical-protein
MTNGKTLVNVVKVNFIDEATNTKHTIETSNEIDIEPINSKGKRDILRIKNKIYGINETDDIVIGYKLKMKDNLFNIETMALIDGGTIQDNKYCGTEVGIAVERHPFTMEIFTEEKDYSRTTGYVKFVYKHCKGKPAKYKIQDGKFLVSSYEAESIPFRNEKPVEIEFINKLEENDNGEKPGESTPIEDIGVEGGEVENKNPDVGVSITNRVVWSFSNQINQDDVNLENFIIKRKSDDSRVNGNVTIDDTKKIVTFVPDSLAIDTVYIAEAKEINKLDGSGKTTALSTEFKAIKIR

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP013247_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013247_4

3473992-3474087

Orphan

Consensus_repeat	Method
ATATACTTAAAAAGTAAATTAAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013247_4

>merge|NZ_CP013247|4|3473992-3474087|CRISPRCasFinder
ATATACTTAAAAAGTAAATTAATCAAATATTATCCAATATTAAATATTTATTAATATTGGATAATATTTGTTAATATAATTAAAAAGTAAATTAAT

>NZ_CP013247|4|4|3473992-3474087|CRISPRCasFinder
ATATACTTAAAAAGTAAATTAAT	CAAATATTATCCAATATTAAATATTTATTAATATTGGATAATATTTGTTA
ATATAATTAAAAAGTAAATTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013247.1\|WP_061318229.1\|3464054_3464486_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061318236.1\|3475421_3478901_+\|non-toxic-nonhemagglutinin-NTNH	unknown	unknown	gnl\|CDD\|366783
NZ_CP013247.1\|WP_061318237.1\|3483636_3484587_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|119376
NZ_CP013247.1\|WP_012703873.1\|3478944_3482835_+\|botulinum-neurotoxin-type-A	unknown	unknown	gnl\|CDD\|366783
NZ_CP013247.1\|WP_053337817.1\|3489106_3489934_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP013247.1\|WP_061319123.1\|3486024_3486999_+\|thymidylate-synthase	unknown	unknown	gnl\|CDD\|238211
NZ_CP013247.1\|WP_061318227.1\|3462516_3463095_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP013247.1\|WP_061318234.1\|3471742_3472171_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061318228.1\|3463104_3463362_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013247.1\|WP_061319173.1\|3485573_3486035_+\|5-hydroxymethylcytidine-5'-monophosphate-nucleosidase-subunit-BcmB	unknown	unknown	gnl\|CDD\|379753
NZ_CP013247.1\|WP_061318233.1\|3469476_3471729_-\|TULIP-family-P47-like-protein	unknown	unknown	gnl\|CDD\|368996
NZ_CP013247.1\|WP_061319124.1\|3487010_3487769_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_CP013247.1\|WP_061318243.1\|3473413_3473950_-\|botulinum-neurotoxin-transcription-activating-sigma-factor-BotR	unknown	unknown	gnl\|CDD\|132253
NZ_CP013247.1\|WP_061318235.1\|3474155_3475406_+\|neurotoxin-associated-TULIP-family-protein-P47	unknown	unknown	gnl\|CDD\|368996
NZ_CP013247.1\|WP_061318231.1\|3465831_3466968_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|372253
NZ_CP013247.1\|WP_061318232.1\|3467965_3469438_-\|TULIP-family-P47-like-protein	unknown	unknown	gnl\|CDD\|368996
NZ_CP013247.1\|WP_061319125.1\|3487814_3489029_+\|thiamine-pyridinylase	unknown	unknown	gnl\|CDD\|275334
NZ_CP013247.1\|WP_101502738.1\|3462040_3462187_+\|DUF2922-family-protein	unknown	unknown	gnl\|CDD\|378571
NZ_CP013247.1\|WP_061318230.1\|3464903_3465839_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP013247.1\|WP_061319126.1\|3490111_3490345_+\|TIGR04540-family-protein	unknown	unknown	gnl\|CDD\|275333

Protein	Function_ID	Function_description	E-value
NZ_CP013247.1\|WP_061319124.1\|3487010_3487769_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	2.84917e-21
NZ_CP013247.1\|WP_061318236.1\|3475421_3478901_+\|non-toxic-nonhemagglutinin-NTNH	gnl\|CDD\|366783	pfam01742, Peptidase_M27, Clostridial neurotoxin zinc protease. These toxins are zinc proteases that block neurotransmitter release by proteolytic cleavage of synaptic proteins such as synaptobrevins, syntaxin and SNAP-25.	7.81679e-81
NZ_CP013247.1\|WP_101502738.1\|3462040_3462187_+\|DUF2922-family-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	0.000178512
NZ_CP013247.1\|WP_012703873.1\|3478944_3482835_+\|botulinum-neurotoxin-type-A	gnl\|CDD\|366783	pfam01742, Peptidase_M27, Clostridial neurotoxin zinc protease. These toxins are zinc proteases that block neurotransmitter release by proteolytic cleavage of synaptic proteins such as synaptobrevins, syntaxin and SNAP-25.	0
NZ_CP013247.1\|WP_061319126.1\|3490111_3490345_+\|TIGR04540-family-protein	gnl\|CDD\|275333	TIGR04540, CLB_0814_fam, conserved hypothetical protein. Members of this family are conserved hypothetical proteins in a narrow range of species. In Clostridium botulinum A ATCC 19397, the gene occurs immediately after a five gene operon for biosynthesis of the natural product bacimethrin, a thiamin antivitamin antibiotic.	6.93618e-25
NZ_CP013247.1\|WP_061319123.1\|3486024_3486999_+\|thymidylate-synthase	gnl\|CDD\|238211	cd00351, TS_Pyrimidine_HMase, Thymidylate synthase and pyrimidine hydroxymethylase: Thymidylate synthase (TS) and deoxycytidylate hydroxymethylase (dCMP-HMase) are homologs that catalyze analogous alkylation of C5 of pyrimidine nucleotides. Both enzymes are involved in the biosynthesis of DNA precursors and are active as homodimers. However, they exhibit distinct pyrimidine base specificities and differ in the details of their catalyzed reactions. TS is biologically ubiquitous and catalyzes the conversion of dUMP and methylene-tetrahydrofolate (CH2THF) to dTMP and dihydrofolate (DHF). It also acts as a regulator of its own expression by binding and inactivating its own RNA. Due to its key role in the de novo pathway for thymidylate synthesis and, hence, DNA synthesis, it is one of the most conserved enzymes across species and phyla. TS is a well-recognized target for anticancer chemotherapy, as well as a valuable new target against infectious diseases. Interestingly, in several protozoa, a single polypeptide chain codes for both, dihydrofolate reductase (DHFR) and thymidylate synthase (TS), forming a bifunctional enzyme (DHFR-TS), possibly through gene fusion at a single evolutionary point. DHFR-TS is also active as a dimer. Virus encoded dCMP-HMase catalyzes the reversible conversion of dCMP and CH2THF to hydroxymethyl-dCMP and THF. This family also includes dUMP hydroxymethylase, which is encoded by several bacteriophages that infect Bacillus subtilis, for their own protection against the host restriction system, and contain hydroxymethyl-dUMP instead of dTMP in their DNA.	1.30025e-41
NZ_CP013247.1\|WP_061318227.1\|3462516_3463095_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.46864e-11
NZ_CP013247.1\|WP_053337817.1\|3489106_3489934_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	5.65524e-134
NZ_CP013247.1\|WP_061319173.1\|3485573_3486035_+\|5-hydroxymethylcytidine-5'-monophosphate-nucleosidase-subunit-BcmB	gnl\|CDD\|379753	pfam15891, Nuc_deoxyri_tr2, Nucleoside 2-deoxyribosyltransferase like.	6.05524e-05
NZ_CP013247.1\|WP_061318233.1\|3469476_3471729_-\|TULIP-family-P47-like-protein	gnl\|CDD\|368996	pfam06597, Clostridium_P47, Clostridium P-47 protein. This family consists of several P-47 proteins from various Clostridium species as well as two related sequences from Pseudomonas putida. The function of this family is unknown.	1.93266e-33
NZ_CP013247.1\|WP_061318243.1\|3473413_3473950_-\|botulinum-neurotoxin-transcription-activating-sigma-factor-BotR	gnl\|CDD\|132253	TIGR03209, P-21_partial, clostridium toxin-associated regulator BotR. Clostridium botulinum neurotoxin production is regulated by a regulatory sigma-70 protein, BotR transcription regulator. Similarly, tetanus toxin production of Clostridium tetani is regulated by TetR which is a very close relative of BotR. Both BotR and TetR are members of the TIGR02937 subfamily of sigma-70 RNA polymerase sigma factors. Functional complementation experiments have been done for botR and tetR in highly transformable strain of Clostridium perfringens host cells to assess functional interchangeability of sigma factors and it has been confirmed that they are interchangeable in vivo.	3.01805e-62
NZ_CP013247.1\|WP_061318235.1\|3474155_3475406_+\|neurotoxin-associated-TULIP-family-protein-P47	gnl\|CDD\|368996	pfam06597, Clostridium_P47, Clostridium P-47 protein. This family consists of several P-47 proteins from various Clostridium species as well as two related sequences from Pseudomonas putida. The function of this family is unknown.	9.59002e-19
NZ_CP013247.1\|WP_061318237.1\|3483636_3484587_+\|peptidoglycan-binding-protein	gnl\|CDD\|119376	cd06414, GH25_LytC-like, The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.	8.053e-88
NZ_CP013247.1\|WP_061318232.1\|3467965_3469438_-\|TULIP-family-P47-like-protein	gnl\|CDD\|368996	pfam06597, Clostridium_P47, Clostridium P-47 protein. This family consists of several P-47 proteins from various Clostridium species as well as two related sequences from Pseudomonas putida. The function of this family is unknown.	2.66182e-65
NZ_CP013247.1\|WP_061319125.1\|3487814_3489029_+\|thiamine-pyridinylase	gnl\|CDD\|275334	TIGR04541, Thiaminase_I_Thiamine_pyridinylase., thiamine pyridinylase. Members of this family are thiamine pyridinylase (EC 2.5.1.2), also called thiaminase I. Most examples of this secreted, thiamine-degrading enzyme are encoded with a cluster for biosynthesis of the thiamine antivitamin bacimethrin. [Cellular processes, Biosynthesis of natural products].	0
NZ_CP013247.1\|WP_061318231.1\|3465831_3466968_+\|ABC-transporter-permease-subunit	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	1.39629e-11
NZ_CP013247.1\|WP_061318230.1\|3464903_3465839_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	6.61505e-87

>NZ_CP013247.1|WP_061318243.1|3473413_3473950_-|botulinum-neurotoxin-transcription-activating-sigma-factor-BotR
MENLFFIIKILKDNNKKFEDIYMNYKNLIDIFIKKYNLSENYNDILNHFWIILIKADLNKFNTENDLNKYISKCLKRYCLSICMKKNRDKKIIYNSEITDINLNLIQDNCFNDIEFEFKDLISILPNTQQNIIYMKFFKDMKDIEIAKKLKISRQSVYKNKSLALEKLKPILKELINI
>NZ_CP013247.1|WP_061318234.1|3471742_3472171_-|hypothetical-protein
MKQTFSFNFDDTLSNSSGLIHLEKVNQNCSPNYQYFKIKFIEGYLHIKNKSGNILEKYDLKDLISLIALKKDYLKLSPLNNKKPKEFTNMKNKHLENRFNLYIINGDIYKKITKNGFLEEIILNRLLLSILLGNEENLLQIA
>NZ_CP013247.1|WP_061318233.1|3469476_3471729_-|TULIP-family-P47-like-protein
MNNLKPFIYYDWGKTILKNTKENYSTNEIIPKTFSMELNGTKITNSTLNGTWKSWNLTDEGEGSHPVLKCIIDDGYLDMNFGASSEKIPLKNVWIKLCMKINPNSDGTYSIPEKSSSFYIKDNSLKISKDNLILDKYLNKLMLSYFKNNIKNIEMFINKSRIQTKVVGDLSLLGWNTENSVSFRTMNEFIKKDNLYPKDFKAVYSYRKMTFTATGTFDSWEMTTGADGRNIRFKCPIKSAAYDLDGDVFNSSTENFLLIQVDLTYFDSKTTINDPTGENDGKQFNLKVKTNDDKLKNVLIVTYNLTDTDGSMSSEDKDFLSLAFRNWFNENIQQFEQIFAYILLDETAKIPEYQWLKPTQISYGSASVETANDEPDLDASIFSAMSMVENNTNSTPSHAVDNRMLQLTKTQAAFGISFPLFIEHFLKQALLSSQFISVDDIVADINTLTITNNKQIIFGKVENSDGKNVDSSLKPGKLKLSLQNNLIVLELFDLTWEQGRGVTGHFDFRQEYELALEAKSGNQIPILKVHDEPEIEYYVEEAQWKTNEDMIVSAVVGTVFSMILGASMKLAGSALSKAGKLIRSKATTIKGRKKIYINRSNVRQLRKDSGVTEIELQRINRRNSSIAAEDARLISNNGTTSIQTLGDMKKKPMSTGQRIAIGAKKIAGTAVMFGAVGLGMNFGEMLINYINAMENNDYSAIPGINSFMQQCIGAMQWPDKDSELKVTFGKLQGIYLLGGTLEKNNKPNSK
>NZ_CP013247.1|WP_061318232.1|3467965_3469438_-|TULIP-family-P47-like-protein
MQTTTLNWDTVYAVPIDIVNEAIKFKHPTPEQFELLDGKYGDCKGSFQEWQIISGGDGGNIRLKIPIKNFKANVIGKYLSGTGGFESANLEIQVKLKYLPHFPQSKNKNEELVDLKIRTKSNNAEDPAIIIIPTSEDVKGFYFNEDVRSLLMTEDDQFIMNYFHRLIKEWLERNLYFFNYVFNTVNLNLYISNNEKWKWTKPSYVDYAYSEIDGDLSKSALGVLCMTDGRKGSKIQQQKIDPNAIPKTSQSGFLISEERLLKNILLPTIPKKFPKCKGDEFEVINQSSQGGGYSYILKLKEGKKIDLDNINASGYTCTPYIQKMKVSLLGNYLRLESTTRVDLPVGVSSICETMCEYRFKLGKNDRGEQTIAYEQIGSPINKQYTEKTQDVGFEIIKGLLIATLGFVLELVPGVGSFLAVALIGGILVGSISLIPSFIEDYNVNAAPSIDLSLENSVSEITWNSSDIFNLNYVALAGPLQLGGTLQVQNT
>NZ_CP013247.1|WP_061318231.1|3465831_3466968_+|ABC-transporter-permease-subunit
MTKYIWQELKRVLIKKKISLIIILILTIVFGGINILKQKTLEEKLEQTKIILDDQIGSKKDEKIINDTREQISYIEETLSMIKNYDKSKIDEKILKLEKENNPKNYYEIKKLKYEKEHNIEKNELVPKGMYATINILGVSDISILYIIILIVLLSDIVSGEYSPNTIKMSLTKPISRKKIIISKFAVSIITGASVIIISTIIFVVEAGIRFGLSDYRMPVYLGTKYVLNKSLPLTVETSQMERAANSISVVPLWSMIVRFVLIAILVSIVSISILMFISTLCKKSLISSIINFILVIVTSLMFIWGIMDNNILATKYGVLLKFTSIPYIIDIFEVLSGYISVGLASSINIFFVLIVCLGWSLIMMFLSTYIFAKRDFD
>NZ_CP013247.1|WP_061318230.1|3464903_3465839_+|ABC-transporter-ATP-binding-protein
MEENEPVLDVKNISKKRGKTPILKDVNFSIGKGEICGFVGRNGAGKTTLMKIITSMLFPDEGEIIICGKNLKTEREEALKNIGAVVETPEMYGYLTGRQNLNYIASMLEDVTKDDIEEAIRYSNLGDKIDEKVKKYSLGMKQRLGLAQALIGDVSLLILDEPTNGLDPLGVVELKNTINTLVKEKGVSVFISSHILSEIESICTKVVFIDNGKIINIEKMDEEPQVNNIKNMFINTDLPEKAAEIIKSIPDIELLKVEKNGVSVLVNTDICDITKILITLHNEGVKVEGFSEVKEKLEDKFIKIVGDNNND
>NZ_CP013247.1|WP_061318229.1|3464054_3464486_+|hypothetical-protein
MINNIMKNNKLVDMLEEESYIENDERIHKIYSEIDKEKYTIIFLALLTFYLYELMILQKNDTPLVFFIILDGIYTDIRLAMNKAYIKTNLKYMETCCWLLLLLRYFKYKFLININFMIIIIISFVIGYLYIKLMLYISNKSKI
>NZ_CP013247.1|WP_061318228.1|3463104_3463362_+|hypothetical-protein
MKNLDVKQHTKKCMDFAKKAGVGSFPNKEVAKVGSMVGVGIGAVLLGIGIYGISQSSVYGTGSLAVGAVAGISNCANLKRIKRKK
>NZ_CP013247.1|WP_061318227.1|3462516_3463095_+|TetR/AcrR-family-transcriptional-regulator
MPKGFTENEKTIITEKLIKECKSNWQKYGYKKTSIDVLCRDIGISKGSFYSFFDTKEDLFYQVIKETQEHLYEIVEERISQNQSKYGVAEALKEIYLEYSKSSFMYDTKNPDFLSFFNKLSEQQRKELTEKSYVGTKFMLNKPFLSLKIDEDLAISVLTAMLTSISQKDKMLCDSVKVFGFMIDNLIDDIFN
>NZ_CP013247.1|WP_101502738.1|3462040_3462187_+|DUF2922-family-protein
MKIFFILIKNCGKAIVNKNIFQNTNGDLSSFKVARIITTETEEIIIEE
>NZ_CP013247.1|WP_061318235.1|3474155_3475406_+|neurotoxin-associated-TULIP-family-protein-P47
MNTYGWDIVYGCSKRVVNKHLEDYITKNKVEFLYSNTAKKQEIKMAFDNWEIINGGSSNFLRIKTPIKEGYFKVKNTTIDLSGVNPVLEIKLDFFNDLSNPNIKKLKFNFGSESNDDIKIIVSDLNGKLQEEDEFYFNKLLINAFIQNEKQISYIFASLNVTSDIEWMNPKQFKFVYYSPTDNSAGYLFILSVVTNRDISKLSTNVDGNILGNNSEVGLLISEKLFLQNLALPKLSSNMGSNITSNNFKVISTSDTTGRIANNSTLNWYGLKVGLIWYYPKINNFSMELFEGNKLKTKLSGIVRLTGYERIYSELNLECTTKFIYDPKNKKASFEDYKTSIMSCKPIFGWLDGAAALVAKSVGDWSLKSFRGSLAFGLTNNFTDIINGIVRWNNLKISQVTNVTLNVGFCIQGNAN
>NZ_CP013247.1|WP_061318236.1|3475421_3478901_+|non-toxic-nonhemagglutinin-NTNH
MKINNNFNIDSPVDNKDVAIVRGRKIDAFFKAFQVAPNIWVAPERYYGESLNINEDQKSDGGIYDSNFLLTNDEKDEFLQATVKILQRINNNVVGAKLLSLISTAIPFPYEYKPGDYRQTNYLVSKDNQHYYTANLVIFGPGTNIVENNAVYYKKEDSENGMGTISEIWFQPFLTYKYDQFYVDPALELIKCLIKSLYYLYGIKPSDDLSIPCRLRSEFNSLEYSELDMVDFLISGGIEYKLLDTNPYWFTDNYFIDAPKNFEKYKNDYETKIKNNNDIANSIKLYLEQKFKINAQDIWELNLSYFSTEFEIMMPEIFNNALNHYYRKEYYVIDYFKNYNINGFINGQIKTILPLSKYNKNIINKPELVVNLINEDNAVLMKSNVYGDGLKGTMDNFYAAYKIPYNIGDEYHINYSYLNNVNVEEINNIPPINDADIYPYRKNSDPFIPVYNITETKEINTTTPFSVNYLQAQVANSNDISLSSDFSKVISSKDRSLVYSFLDNTIDYLDSIKYDEPINTDKKYYLWLKDIFRNYSFDMTETQEVNTLYGINKVVPWLGKALNILNTGNSFIEEFKSLGPISLINKKENITMPKIEIDEIPNSMLNLSFKDLSENLFNRFSKNNSYFEKIYYDFLDQWWTQYYSQYFDLICMAKKSILAQESLIKKIIQKKLSYLIGNSNISSDNLALMNLTTTNTLRDISNESQIAMNNVDSFLNSAAICVFEGNIYSKFISFMEQCINNINKNTREFIQKCTNITENEKLQLINQNIFSSLDFDFLNIENLKSLFSSETALLIKEETSPYELVLYAFQEPDNNAIGDASAKNTSIEYSKDIDLVYGINSDALYLNGSNQSISFSNDFFENGLTNSFSIYFWLRNLGKDTIKSKLIGSKEDNCGWEIYFQDTGLVFNMIDSNGNEKNIYLSDVSNNSWHYITISVDRLKEQLLIFIDDNLVANESIKEILNIYSSNIISLLSENNPSYIEGLTILNKPTTSQEVLNNYFKVLNNSYIRDSNEERLEYNKTYQLYNYVFSDKPICEVKQNNNIYLTINNTNNLNLQLSKFKLLSINSNKQYVQKFDEVIISILGNMEKYIDISEDNRLQLIDNKNGAKKMIISNDMFISNCLTLSCGGKYICLSMKDENHNWMIRNNDMSKYLYLWSFK
>NZ_CP013247.1|WP_012703873.1|3478944_3482835_+|botulinum-neurotoxin-type-A
MPFVNKQFNYKDPVNGVDIAYIKIPNAGQMQPVKAFKIHNKIWVIPERDTFTNPEEGDLNPPPEAKQVPVSYYDSTYLSTDNEKDNYLKGVTKLFERIYSTDLGRMLLTSIVRGIPFWGGSTIDTELKVIDTNCINVIQPDGSYRSEELNLVIIGPSADIIQFECKSFGHDVLNLTRNGYGSTQYIRFSPDFTFGFEESLEVDTNPLLGAGKFATDPAVTLAHELIHAEHRLYGIAINPNRVFKVNTNAYYEMSGLEVSFEELRTFGGHDAKFIDSLQENEFRLYYYNKFKDVASTLNKAKSIIGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKFDKLYKMLTEIYTEDNFVNFFKVINRKTYLNFDKAVFRINIVPDENYTIKDGFNLKGANLSTNFNGQNTEINSRNFTRLKNFTGLFEFYKLLCVRGIIPFKTKSLDEGYNKALNDLCIKVNNWDLFFSPSEDNFTNDLDKVEEITADTNIEAAEENISLDLIQQYYLTFDFDNEPENISIENLSSDIIGQLEPMPNIERFPNGKKYELDKYTMFHYLRAQEFEHGDSRIILTNSAEEALLKPNVAYTFFSSKYVKKINKAVEAFMFLNWAEELVYDFTDETNEVTTMDKIADITIIVPYIGPALNIGNMLSKGEFVEAIIFTGVVAMLEFIPEYALPVFGTFAIVSYIANKVLTVQTINNALSKRNEKWDEVYKYTVTNWLAKVNTQIDLIREKMKKALENQAEATKAIINYQYNQYTEEEKNNINFNIDDLSSKLNESINSAMININKFLDQCSVSYLMNSMIPYAVKRLKDFDASVRDVLLKYIYDNRGTLVLQVDRLKDEVNNTLSADIPFQLSKYVDNKKLLSTFTEYIKNIVNTSILSIVYKKDDLIDLSRYGAKINIGDRVYYDSIDKNQIKLINLESSTIEVILKNAIVYNSMYENFSTSFWIKIPKYFSKINLNNEYTIINCIENNSGWKVSLNYGEIIWTLQDNKQNIQRVVFKYSQMVNISDYINRWIFVTITNNRLTKSKIYINGRLIDQKPISNLGNIHASNKIMFKLDGCRDPRRYIMIKYFNLFDKELNEKEIKDLYDSQSNSGILKDFWGNYLQYDKPYYMLNLFDPNKYVDVNNIGIRGYMYLKGPRGSVVTTNIYLNSTLYEGTKFIIKKYASGNEDNIVRNNDRVYINVVVKNKEYRLATNASQAGVEKILSALEIPDVGNLSQVVVMKSKDDQGIRNKCKMNLQDNNGNDIGFIGFHLYDNIAKLVASNWYNRQVGKASRTFGCSWEFIPVDDGWGESSL
>NZ_CP013247.1|WP_061318237.1|3483636_3484587_+|peptidoglycan-binding-protein
MLKGIDASEHQGEICWKAVKNSGIQFAILRAGYGKNNIDEQFINNANGCTSVGMPFGLYWFSYAYTEDMARKEAQYCVAQAKKYKISYPICYDLEYDTIRYANNCGVTITKSLATKMVHAFCQEVERNGYFAMNYSNQDFLLNKFDSDLLKRYELWYAWYNNSLNRKCGIWQYSENGRVPGIAGVAVDMNYCYLNMSGAYNTSPNKNTFRGGHYLIRELQQEINSQGLREVVVDGIAGQATINSVPVCKQGARGGITKVIQQILISIGYPVGSHGADGVFGDSTVTAIKAFQRDCHLVADGIVGKETWKALFRNLK
>NZ_CP013247.1|WP_061319173.1|3485573_3486035_+|5-hydroxymethylcytidine-5'-monophosphate-nucleosidase-subunit-BcmB
MSKRVFLAAPFKGAIKEKQSIMKEQEKKRIENLILFLEEKGWKVDNAHKREEWGANSMSPDQCTKLDYDAIKECDLFIAFPGVPVSPGTHIEIGWASAMGKKIILLLAEKEENYAYLIRGLHTVSNVHYIIYNEEKEYLQKLNLYLDGENNEV
>NZ_CP013247.1|WP_061319123.1|3486024_3486999_+|thymidylate-synthase
MKFKNFHEAYLKNLNDVYYNPEFINQPRGNVSKERLNYFMILENPRERICYTKSRKTNIVFNFAEALWYLSGSNDLDYISYYASNMKKYSMDGKTLTGTAYGPKIFSYGYNKINQWNRIIKLFKEDPDTKRGFIEIFDANEDLSLKNIDVSCTIGFQFFIREHKLYMTTFMRANDAYRGIISDVFSFTFIQEFLATELNLDIGQYSHQVATTHIYEPDFKLAEKVLCESKSVKKELSFPRMPKKDNWEDLKIVLQYEKELRKQRIHLTKKDIDELEIDKYWKQIICLFVLYQEIYYGDNLDYEIYESLEPLYQYLFSNKWNQYF
>NZ_CP013247.1|WP_061319124.1|3487010_3487769_+|methyltransferase-domain-containing-protein
MGTCWKDEEVSKKFNLYNDMLENILGFDYIFQNLKSNESIKKILDFGCGPGKVAERMAKIKPESQIIAVDQSQNMLDIAMKEHNKENIDYRLIEQNQLKGIEKNSIDCVVLCFVIINNSDKDRIKTIFQEIFRVLKKGGKFFILDSNPNAAGVEFSTFTNGKSGQAYRLGDHKKQFLKIPNNKVLILEDYYWPIDFYINNLEAVGFENYKIVEPTIEKINKRDLNAIEKTYDIKCWGSEKNKPPFIIFDVEK
>NZ_CP013247.1|WP_061319125.1|3487814_3489029_+|thiamine-pyridinylase
MKFKNLFKRSLSLLFSFIMIFTLVSGLNVKAFSGDEPKQTLNVALYEYVPDPIRFKKAVETEWNKKEPNIKLNFVDWDCYSEDPPKDLDVFVFDAIYLSHFVKKGYLSEIPEKDIKNKEDILPFAMEGCTIKGSAYAIPQIICTNLLFSRKGDYDIQKVNSVYDLYDKLGKFTSEDIILPNNKGLLIDMSGGTSKACMYLDSLIDTTQEYTKFCSLPNLNELNKDAIESLVLLQSMAGKSQANYWPENNDSYIRAKWFINGKGRAYIGYTEAMSQMKEFANDIDFKTISLSKNSNIPIFYGDVVGINSSITNPYKKEKAIELANIITDKSTMVKAVSPDENNEYPQYLLPARRSVYHNLENKYPIYGRLYKIAHNPNNKLFRTGPEIREWLKQAKKIITEYLQQ
>NZ_CP013247.1|WP_053337817.1|3489106_3489934_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MKKVLSIAGSDCSGGAGIQADLKTFSAHGVFGMSVIVSVVAENTSRVIDIQDITPDMIKSQIDAVYEDIGTDAVKIGMLSTPDCMKAVSEKLQEYKPKNVVIDPVMYAKNGCPLMDPNSVSTLIESIICHADILTPNIPEAERISGYKIKTLEDMEKAAVIIEGMGCKSVLIKGGHYIGDAVDVLYDGNKFYHYKTQRIHTKNTHGTGCTLSSAIASNLALGFEINEAVKRAKNYITMAIEHSLEIGKGNGPTNHFYQVYLNGLKGMELDNHTRS
>NZ_CP013247.1|WP_061319126.1|3490111_3490345_+|TIGR04540-family-protein
MRKVYKNPKELATCLKDLVDLYFEDLMTYEKLEEKVSKIVEANKDSIYKNGVINTKLANVLGNLRIDVINKIVKEEN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013247_3	3.1\|1842995\|25\|NZ_CP013247\|CRISPRCasFinder	1842995-1843019	25	MH598512	Bacillus phage Wes44, complete genome	8512-8536	4	0.84
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	MN694394	Marine virus AFVG_250M672, complete genome	9926-9957	5	0.844
NZ_CP013247_2	2.1\|1012950\|36\|NZ_CP013247\|CRISPRCasFinder	1012950-1012985	36	MK250029	Prevotella phage Lak-C1, complete genome	463569-463604	6	0.833
NZ_CP013247_2	2.1\|1012950\|36\|NZ_CP013247\|CRISPRCasFinder	1012950-1012985	36	MK250016	Prevotella phage Lak-A1, complete genome	498504-498539	6	0.833
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	MF288922	Bacillus phage Janet, complete genome	141740-141771	7	0.781
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	NZ_CP037428	Myroides odoratimimus strain G13 plasmid pFM-G13, complete sequence	28647-28678	8	0.75
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	MN694568	Marine virus AFVG_250M879, complete genome	47511-47542	8	0.75
NZ_CP013247_1	1.3\|1012601\|36\|NZ_CP013247\|CRT	1012601-1012636	36	MN694394	Marine virus AFVG_250M672, complete genome	9925-9960	9	0.75
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	NC_018516	Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence	253634-253665	9	0.719
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	NZ_CP053970	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence	176811-176842	9	0.719
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	NZ_CP053979	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence	85024-85055	9	0.719
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	NZ_CP013277	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence	303346-303377	9	0.719
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	NZ_CP039723	Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence	70747-70778	9	0.719
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	NZ_CP009348	Bacillus thuringiensis HD1002 plasmid 2, complete sequence	303347-303378	9	0.719
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	NZ_CP009334	Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence	187831-187862	9	0.719
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	NZ_CP045024	Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence	302959-302990	9	0.719
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	AP014437	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S26-C121, * SEQUENCING IN PROGRESS *, 5 ordered pieces	5340-5371	9	0.719
NZ_CP013247_1	1.6\|1012601\|37\|NZ_CP013247\|CRISPRCasFinder	1012601-1012637	37	MN694394	Marine virus AFVG_250M672, complete genome	9925-9961	10	0.73
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	NC_019357	Shigella boydii plasmid pSB13, complete sequence	4416-4447	10	0.688
NZ_CP013247_1	1.8\|1012602\|32\|NZ_CP013247\|PILER-CR	1012602-1012633	32	MN856100	Bacteriophage sp. isolate 2, complete genome	108924-108955	10	0.688
NZ_CP013247_2	2.1\|1012950\|36\|NZ_CP013247\|CRISPRCasFinder	1012950-1012985	36	NC_001949	Lactococcus lactis DPC3147 plasmid pMRC01, complete sequence	11489-11524	10	0.722

1. spacer 3.1|1842995|25|NZ_CP013247|CRISPRCasFinder matches to MH598512 (Bacillus phage Wes44, complete genome) position: , mismatch: 4, identity: 0.84

ttagttctaacaatattggttgtaa	CRISPR spacer
ctgattctaactatattggttgtaa	Protospacer
.*..******* *************

2. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to MN694394 (Marine virus AFVG_250M672, complete genome) position: , mismatch: 5, identity: 0.844

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
gttagggtcttcttttactgcacttatttctt	Protospacer
. ***************** ****** ****

3. spacer 2.1|1012950|36|NZ_CP013247|CRISPRCasFinder matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 6, identity: 0.833

tacaaatccaaaagaaattgatttaaatcaaataaa	CRISPR spacer
tagttatccaaaagaatttgattttaatcaaataac	Protospacer
**   *********** ******* **********

4. spacer 2.1|1012950|36|NZ_CP013247|CRISPRCasFinder matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 6, identity: 0.833

tacaaatccaaaagaaattgatttaaatcaaataaa	CRISPR spacer
tagttatccaaaagaatttgattttaatcaaataac	Protospacer
**   *********** ******* **********

5. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to MF288922 (Bacillus phage Janet, complete genome) position: , mismatch: 7, identity: 0.781

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
agtgatttcttcttctagttcacttaattctt	Protospacer
***..  *******.** *************

6. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to NZ_CP037428 (Myroides odoratimimus strain G13 plasmid pFM-G13, complete sequence) position: , mismatch: 8, identity: 0.75

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
ttctgtatcttcttttactttacttacttcta	Protospacer
  . * .*************.***** *****

7. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to MN694568 (Marine virus AFVG_250M879, complete genome) position: , mismatch: 8, identity: 0.75

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
tttattatcttctttaacttcatttaattctt	Protospacer
  **  .******** ******.********

8. spacer 1.3|1012601|36|NZ_CP013247|CRT matches to MN694394 (Marine virus AFVG_250M672, complete genome) position: , mismatch: 9, identity: 0.75

tagtagggtcttcttttacttcacttaattctaaga	CRISPR spacer
agttagggtcttcttttactgcacttatttcttgat	Protospacer
 . ***************** ****** **** ..

9. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to NC_018516 (Bacillus thuringiensis HD-789 plasmid pBTHD789-1, complete sequence) position: , mismatch: 9, identity: 0.719

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
taaaagttcttcgtttacttctcttaattccg	Protospacer
 . *.* ***** ******** ********..

10. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to NZ_CP053970 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
taaaagttcttcgtttacttctcttaattccg	Protospacer
 . *.* ***** ******** ********..

11. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to NZ_CP053979 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
taaaagttcttcgtttacttctcttaattccg	Protospacer
 . *.* ***** ******** ********..

12. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to NZ_CP013277 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-2-350K, complete sequence) position: , mismatch: 9, identity: 0.719

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
taaaagttcttcgtttacttctcttaattccg	Protospacer
 . *.* ***** ******** ********..

13. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to NZ_CP039723 (Bacillus thuringiensis strain BT-59 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
taaaagttcttcgtttacttctcttaattccg	Protospacer
 . *.* ***** ******** ********..

14. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to NZ_CP009348 (Bacillus thuringiensis HD1002 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
taaaagttcttcgtttacttctcttaattccg	Protospacer
 . *.* ***** ******** ********..

15. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to NZ_CP009334 (Bacillus thuringiensis strain HD1011 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
taaaagttcttcgtttacttctcttaattccg	Protospacer
 . *.* ***** ******** ********..

16. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to NZ_CP045024 (Bacillus thuringiensis strain JW-1 plasmid p2, complete sequence) position: , mismatch: 9, identity: 0.719

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
taaaagttcttcgtttacttctcttaattccg	Protospacer
 . *.* ***** ******** ********..

17. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to AP014437 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C27-MedDCM-OCT-S26-C121, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces) position: , mismatch: 9, identity: 0.719

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
aagtatattttcttttactttacctaattcta	Protospacer
*.  . .*.***********.**.********

18. spacer 1.6|1012601|37|NZ_CP013247|CRISPRCasFinder matches to MN694394 (Marine virus AFVG_250M672, complete genome) position: , mismatch: 10, identity: 0.73

tagtagggtcttcttttacttcacttaattctaagat	CRISPR spacer
agttagggtcttcttttactgcacttatttcttgatc	Protospacer
 . ***************** ****** **** .. .

19. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to NC_019357 (Shigella boydii plasmid pSB13, complete sequence) position: , mismatch: 10, identity: 0.688

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
atctatatcttcttttacttcttttaattcac	Protospacer
* . . .************** .*******

20. spacer 1.8|1012602|32|NZ_CP013247|PILER-CR matches to MN856100 (Bacteriophage sp. isolate 2, complete genome) position: , mismatch: 10, identity: 0.688

agtagggtcttcttttacttcacttaattcta	CRISPR spacer
tgcgtatgcttcttttactttatttaattctg	Protospacer
 *.. .  ************.*.********.

21. spacer 2.1|1012950|36|NZ_CP013247|CRISPRCasFinder matches to NC_001949 (Lactococcus lactis DPC3147 plasmid pMRC01, complete sequence) position: , mismatch: 10, identity: 0.722

tacaaatccaaaagaaattgatttaaatcaaataaa	CRISPR spacer
cgaatggaaaaaagaaactgatttatatcaaataaa	Protospacer
.. * .   ********.******* **********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

434585 : 441650

uncultured_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061318790.1\|434585_435530_-	YafY family transcriptional regulator	A0A1B0RXM1	Streptococcus_phage	1.5e-11	28.9
WP_014520617.1\|436152_437148_+	2-hydroxyacyl-CoA dehydratase	NA	NA	NA	NA
WP_003358645.1\|437264_438026_+	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA
WP_014520618.1\|438043_438475_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	8.8e-12	31.6
WP_061318791.1\|438476_439142_+	putative 7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	1.3e-38	44.1
WP_061318792.1\|439145_439736_+	GTP cyclohydrolase I FolE	S4U0J3	uncultured_phage	1.6e-43	52.3
WP_014520621.1\|439919_440579_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.7e-59	51.2
WP_014520622.1\|440693_441650_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	7.7e-16	33.5

DBSCAN-SWA_2

1683606 : 1693074

Synechococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061317987.1\|1683606_1685106_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.0e-67	45.6
WP_033066091.1\|1685319_1685937_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.1e-26	40.3
WP_012099415.1\|1686064_1687060_-	phosphoribosylformylglycinamidine cyclo-ligase	M4QRQ6	Synechococcus_phage	9.9e-67	43.7
WP_012100668.1\|1687120_1688569_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.2e-58	35.1
WP_012047943.1\|1688660_1689365_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	6.0e-42	42.1
WP_061317986.1\|1689364_1689844_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.8e-27	49.4
WP_061317984.1\|1690518_1693074_-	selenium-dependent xanthine dehydrogenase	A0A0P0IVM8	Acinetobacter_phage	1.3e-09	32.4

DBSCAN-SWA_3

1829750 : 1861961

Clostridium_phage(76.92%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061319084.1\|1829750_1832378_-	DNA polymerase I	F8WQ35	Bacillus_phage	4.2e-64	35.4
WP_061319085.1\|1832395_1833520_-	chorismate synthase	A0A291AU41	Pandoravirus	2.6e-31	30.1
WP_061319086.1\|1833918_1834698_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4J8A3	uncultured_Caudovirales_phage	2.3e-87	62.3
WP_003357959.1\|1834844_1835039_-	hypothetical protein	NA	NA	NA	NA
WP_003358009.1\|1835057_1835312_-	hemolysin XhlA family protein	A0A0A7RTX0	Clostridium_phage	4.8e-26	70.9
WP_061319087.1\|1835464_1836253_-	hypothetical protein	A0A0A7RU33	Clostridium_phage	6.7e-26	33.8
WP_003360045.1\|1836285_1837110_-	discoidin domain-containing protein	A0A0A7RU33	Clostridium_phage	5.6e-15	28.4
WP_061319088.1\|1837175_1837943_-	hypothetical protein	NA	NA	NA	NA
WP_061319089.1\|1837994_1838774_-	discoidin domain-containing protein	NA	NA	NA	NA
WP_061319090.1\|1838776_1839694_-	hypothetical protein	NA	NA	NA	NA
WP_061319091.1\|1839726_1840812_-	hypothetical protein	A0A0A7RU66	Clostridium_phage	7.9e-142	70.1
WP_061319092.1\|1840823_1841822_-	hypothetical protein	A0A0A7RW91	Clostridium_phage	5.5e-142	72.9
WP_061319093.1\|1841833_1842109_-	hypothetical protein	NA	NA	NA	NA
WP_061319094.1\|1842111_1844133_-	hypothetical protein	A0A0A7RU09	Clostridium_phage	2.5e-56	48.5
WP_061319095.1\|1844144_1845653_-	hypothetical protein	A0A0A7RU28	Clostridium_phage	5.5e-93	37.7
WP_061319096.1\|1845666_1846662_-	hypothetical protein	A0A0A7RU61	Clostridium_phage	3.0e-111	60.7
WP_061319097.1\|1846663_1848004_-	caspase family protein	A0A0A7RW86	Clostridium_phage	2.1e-75	74.6
WP_003357831.1\|1848018_1848360_-	hypothetical protein	A0A0A7S0S4	Clostridium_phage	2.1e-16	55.7
WP_061319098.1\|1848372_1849458_-	hypothetical protein	NA	NA	NA	NA
WP_061319099.1\|1849444_1849879_-	hypothetical protein	NA	NA	NA	NA
WP_061319100.1\|1849891_1851433_-	hypothetical protein	A0A0A7RU22	Clostridium_phage	5.8e-05	42.4
WP_003483832.1\|1851596_1851839_-	hypothetical protein	A0A0A7RW80	Clostridium_phage	4.4e-21	67.6
WP_003357967.1\|1851798_1852215_-	hypothetical protein	A0A0A7S0S0	Clostridium_phage	9.0e-46	71.2
WP_061319101.1\|1852229_1853117_-	hypothetical protein	A0A0A7RTZ9	Clostridium_phage	5.9e-119	74.1
WP_061319102.1\|1853121_1853541_-	hypothetical protein	A0A0A7RU17	Clostridium_phage	2.1e-58	74.1
WP_061319103.1\|1853546_1853894_-	hypothetical protein	A0A0A7RU51	Clostridium_phage	3.6e-32	58.9
WP_012100778.1\|1853898_1854264_-	hypothetical protein	A0A0A7RW73	Clostridium_phage	2.2e-32	57.0
WP_003396354.1\|1854263_1854548_-	hypothetical protein	A0A0A7S0R4	Clostridium_phage	2.7e-25	61.2
WP_061319104.1\|1855052_1855574_-	hypothetical protein	A0A0A7RVS1	Clostridium_phage	2.4e-35	50.0
WP_061319105.1\|1855687_1856008_-	hypothetical protein	NA	NA	NA	NA
WP_033066299.1\|1856064_1856865_-	ATP-binding protein	A0A2K9V3L7	Faecalibacterium_phage	9.9e-33	34.8
WP_061319106.1\|1856854_1857760_-	phage replisome organizer N-terminal domain-containing protein	A8ASN4	Listeria_phage	2.7e-39	39.9
WP_003403576.1\|1857853_1858066_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_025774852.1\|1858127_1858337_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_003360073.1\|1858528_1858939_+	helix-turn-helix domain-containing protein	A0A0A7RUJ5	Clostridium_phage	1.0e-09	56.2
WP_061319107.1\|1859240_1859390_+	hypothetical protein	NA	NA	NA	NA
WP_061319108.1\|1860473_1861961_+	MBOAT family protein	A0A125RNP0	Pseudomonas_phage	2.8e-65	37.8

DBSCAN-SWA_4

2056205 : 2106559

Clostridium_phage(60.53%)

terminase,head,capsid,integrase,plate,portal,protease,tail

attL 2084972:2084991|attR 2087675:2087694

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_012704407.1\|2056205_2056388_-	hypothetical protein	A0A0A7RTH9	Clostridium_phage	2.9e-09	63.2
WP_003489890.1\|2056565_2056706_-	hypothetical protein	NA	NA	NA	NA
WP_072570772.1\|2057168_2057939_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4J8A3	uncultured_Caudovirales_phage	7.9e-88	65.6
WP_061333777.1\|2057983_2058178_-	hypothetical protein	NA	NA	NA	NA
WP_072570773.1\|2058210_2058444_-	hemolysin XhlA family protein	NA	NA	NA	NA
WP_072570774.1\|2058457_2059216_-	DNA adenine methylase	Q0SPG6	Clostridium_phage	9.4e-110	75.8
WP_072570775.1\|2059328_2059511_-	hypothetical protein	A0A0A8WJT8	Clostridium_phage	5.2e-14	69.1
WP_072570776.1\|2059512_2059809_-	hypothetical protein	J9QEB9	Clostridium_phage	1.7e-14	48.5
WP_162273775.1\|2059819_2060953_-\|tail	phage tail protein	A0A0A7RTQ0	Clostridium_phage	2.5e-58	56.6
WP_162273776.1\|2060971_2061586_-	YmfQ family protein	A0A0A7RTT8	Clostridium_phage	2.7e-54	53.9
WP_072570778.1\|2061578_2062643_-\|plate	baseplate J/gp47 family protein	A0A0A7RUN3	Clostridium_phage	3.9e-101	53.0
WP_080490127.1\|2062635_2063073_-	DUF2634 domain-containing protein	A0A0A7RUS1	Clostridium_phage	6.3e-42	58.9
WP_072570779.1\|2063075_2063312_-	hypothetical protein	NA	NA	NA	NA
WP_072570780.1\|2063323_2064316_-\|terminase	terminase	A0A0A7RWY4	Clostridium_phage	2.7e-125	67.5
WP_072570781.1\|2064312_2064750_-\|terminase	terminase	A0A0A7RTT3	Clostridium_phage	6.8e-44	59.7
WP_072570782.1\|2064788_2067329_-\|tail	phage tail tape measure protein	A0A0A7RUN0	Clostridium_phage	1.6e-140	57.9
WP_072570783.1\|2067387_2067816_-\|tail	phage tail tube protein	A0A0A7RVT1	Clostridium_phage	1.8e-28	45.0
WP_072570784.1\|2067818_2068880_-\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0A7S0D2	Clostridium_phage	2.3e-93	52.3
WP_072570785.1\|2068885_2069317_-	hypothetical protein	A0A0K2SUF6	Clostridium_phage	6.1e-13	36.4
WP_072570786.1\|2069313_2069724_-	HK97 gp10 family phage protein	A0A0A7RTS4	Clostridium_phage	5.2e-22	40.3
WP_072570787.1\|2069769_2070027_-	hypothetical protein	NA	NA	NA	NA
WP_072570788.1\|2070273_2070684_-	hypothetical protein	A0A0A7RTP2	Clostridium_phage	5.8e-21	39.7
WP_072570789.1\|2070703_2071063_-\|head	phage head closure protein	A0A0A7RVS7	Clostridium_phage	2.1e-27	65.0
WP_072570790.1\|2071052_2071313_-	hypothetical protein	A0A1B1P751	Bacillus_phage	2.1e-08	39.8
WP_072571026.1\|2071327_2072527_-\|capsid	phage major capsid protein	A0A1B1P752	Bacillus_phage	3.4e-69	39.2
WP_072570791.1\|2072534_2073275_-\|protease	Clp protease ClpP	A0A0K2CYC6	Paenibacillus_phage	7.0e-41	44.5
WP_072570792.1\|2073267_2074425_-\|portal	phage portal protein	E2ELI3	Clostridium_phage	1.5e-69	37.1
WP_072570794.1\|2074543_2076184_-\|terminase	terminase large subunit	E2ELI2	Clostridium_phage	1.3e-127	42.9
WP_072570796.1\|2076173_2076671_-\|terminase	P27 family phage terminase small subunit	E2ELI1	Clostridium_phage	4.5e-36	47.6
WP_072570799.1\|2076823_2077129_-	HNH endonuclease	Q8W5V3	Listeria_phage	1.3e-22	48.5
WP_041350528.1\|2077276_2077822_-\|integrase	site-specific integrase	E2ELN7	Clostridium_phage	2.5e-56	60.7
WP_045894747.1\|2077823_2078039_-	Zn-finger containing protein	NA	NA	NA	NA
WP_072570801.1\|2078223_2078652_-	hypothetical protein	NA	NA	NA	NA
WP_173664598.1\|2078635_2078806_-	hypothetical protein	NA	NA	NA	NA
WP_072570803.1\|2078807_2079098_-	hypothetical protein	NA	NA	NA	NA
WP_072570805.1\|2079090_2079243_-	hypothetical protein	A0A0A7RTX2	Clostridium_phage	6.2e-05	46.5
WP_173664599.1\|2079257_2079416_-	hypothetical protein	NA	NA	NA	NA
WP_072570807.1\|2079518_2080568_-	nucleoid-associated protein	J9QE81	Clostridium_phage	9.3e-39	31.0
WP_072570810.1\|2080646_2080898_-	hypothetical protein	NA	NA	NA	NA
WP_072570812.1\|2080944_2081127_-	hypothetical protein	NA	NA	NA	NA
WP_173664600.1\|2081317_2081464_-	hypothetical protein	NA	NA	NA	NA
WP_072570814.1\|2081496_2081703_-	hypothetical protein	NA	NA	NA	NA
WP_155118969.1\|2081742_2081916_-	hypothetical protein	NA	NA	NA	NA
WP_072570817.1\|2081945_2082656_-	phosphoadenosine phosphosulfate reductase	A0A0E3M3Z6	Verrucomicrobia_phage	1.1e-51	46.2
WP_072570819.1\|2082769_2083012_-	hypothetical protein	NA	NA	NA	NA
WP_061319810.1\|2083085_2083319_-	hypothetical protein	NA	NA	NA	NA
WP_072570822.1\|2083484_2084384_-	DnaD domain protein	D2XR43	Bacillus_phage	2.8e-52	46.9
WP_072570824.1\|2084454_2084673_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_080443329.1\|2084684_2084837_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
2084972:2084991	attL	NA	NA	NA	NA
WP_072570826.1\|2085007_2085553_+	helix-turn-helix transcriptional regulator	A0A1U9WQN6	Geobacillus_phage	2.0e-05	44.6
WP_072570828.1\|2085552_2086707_+\|integrase	site-specific integrase	A0A2R2ZGM9	Clostridioides_phage	3.1e-27	27.6
WP_003361641.1\|2086909_2087455_-	NADH peroxidase	NA	NA	NA	NA
WP_061319823.1\|2088096_2088795_-	pyruvate formate lyase-activating protein	K0NXZ3	Escherichia_virus	4.0e-06	32.3
2087675:2087694	attR	NA	NA	NA	NA
WP_061319822.1\|2088974_2091203_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	4.2e-174	45.4
WP_003357284.1\|2091715_2091967_-	hypothetical protein	NA	NA	NA	NA
WP_014521832.1\|2092414_2092984_-	50S ribosomal protein L25	NA	NA	NA	NA
WP_061319940.1\|2093150_2093765_-	hypothetical protein	NA	NA	NA	NA
WP_003402447.1\|2093990_2094419_+	transcriptional repressor	NA	NA	NA	NA
WP_061319941.1\|2094487_2095723_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003357324.1\|2095823_2096759_+	hypothetical protein	NA	NA	NA	NA
WP_061319942.1\|2096918_2097875_-	WYL domain-containing protein	NA	NA	NA	NA
WP_061319943.1\|2098089_2098524_-	hypothetical protein	NA	NA	NA	NA
WP_025775043.1\|2098578_2098824_-	hypothetical protein	NA	NA	NA	NA
WP_025775044.1\|2098875_2099307_-	hypothetical protein	NA	NA	NA	NA
WP_014521838.1\|2099655_2100381_-\|protease	CPBP family intramembrane metalloprotease	G3MBD0	Bacillus_virus	1.9e-06	28.2
WP_033045119.1\|2100404_2100983_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_061319944.1\|2101003_2103325_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	3.4e-174	44.4
WP_012100978.1\|2103462_2105142_-\|protease	ATP-dependent protease LonB	K7YGL9	Megavirus	3.6e-16	31.6
WP_003357457.1\|2105269_2106559_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.3e-145	59.8

DBSCAN-SWA_5

3160132 : 3169206

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_061319261.1\|3160132_3162361_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.5e-107	34.7
WP_061319275.1\|3163009_3163219_+	recombinase RecT	H7BUU1	unidentified_phage	1.5e-12	57.1
WP_061319260.1\|3164100_3164448_+	hypothetical protein	A0A0A7RTL9	Clostridium_phage	4.9e-29	59.6
WP_061319258.1\|3165133_3165943_+	DUF2935 domain-containing protein	A0A2I2L551	Orpheovirus	2.3e-45	41.0
WP_011987477.1\|3166557_3167934_+	PhoH family protein	A0A141HS37	Bacillus_phage	1.8e-106	44.3
WP_033064823.1\|3168201_3169206_+	phosphodiester glycosidase family protein	A0A1P8CWN9	Bacillus_phage	5.6e-09	30.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013247

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection