CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016011	Salmonella enterica subsp. enterica serovar Newport strain CFSAN001660 plasmid pCFSAN001660, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP016010	Salmonella enterica subsp. enterica serovar Newport strain CFSAN001660 chromosome, complete genome	3 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT	0	19	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016010_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016010_1

588610-588710

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAACGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016010_1

>merge|NZ_CP016010|1|588610-588710|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAAGGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGCGGTCGTGGTGATGGTCGTCGCTTCAGCGGCGAACGTCGTGAA

>NZ_CP016010|1|1|588610-588710|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAA	GGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGCGGTCGTGGTGATGGTCGTC
GCTTCAGCGGCGAACGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016010.1\|WP_000928379.1\|594550_594868_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP016010.1\|WP_001040200.1\|581565_581967_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP016010.1\|WP_000089674.1\|581966_582911_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP016010.1\|WP_000130411.1\|590258_591266_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP016010.1\|WP_000802069.1\|585817_586702_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP016010.1\|WP_000908562.1\|594060_594564_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP016010.1\|WP_000884721.1\|593542_594067_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP016010.1\|WP_000224381.1\|588923_590168_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP016010.1\|WP_000380404.1\|594905_595349_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP016010.1\|WP_000059465.1\|583061_583331_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP016010.1\|WP_000421309.1\|592330_593326_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP016010.1\|WP_014343907.1\|591443_592340_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP016010.1\|WP_010723222.1\|586807_586888_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP016010.1\|WP_000037599.1\|595328_595847_-\|protein/nucleic-acid-deglycase	unknown	unknown	gnl\|CDD\|153228
NZ_CP016010.1\|WP_001532495.1\|595977_596613_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP016010.1\|WP_000207657.1\|574688_576032_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP016010.1\|WP_001031038.1\|577139_578642_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP016010.1\|WP_001670767.1\|583572_585708_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP016010.1\|WP_000105461.1\|576659_577112_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP016010.1\|WP_000133064.1\|578666_581345_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401

Protein	Function_ID	Function_description	E-value
NZ_CP016010.1\|WP_000928379.1\|594550_594868_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.3214e-44
NZ_CP016010.1\|WP_001040200.1\|581565_581967_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	9.5207e-53
NZ_CP016010.1\|WP_000089674.1\|581966_582911_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP016010.1\|WP_000130411.1\|590258_591266_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP016010.1\|WP_000802069.1\|585817_586702_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP016010.1\|WP_000908562.1\|594060_594564_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NZ_CP016010.1\|WP_000884721.1\|593542_594067_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.82299e-84
NZ_CP016010.1\|WP_000224381.1\|588923_590168_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP016010.1\|WP_000380404.1\|594905_595349_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	1.36854e-99
NZ_CP016010.1\|WP_000059465.1\|583061_583331_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54
NZ_CP016010.1\|WP_000421309.1\|592330_593326_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.77757e-116
NZ_CP016010.1\|WP_014343907.1\|591443_592340_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP016010.1\|WP_010723222.1\|586807_586888_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.66225e-08
NZ_CP016010.1\|WP_000037599.1\|595328_595847_-\|protein/nucleic-acid-deglycase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	5.12939e-86
NZ_CP016010.1\|WP_001532495.1\|595977_596613_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.29768e-69
NZ_CP016010.1\|WP_000207657.1\|574688_576032_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP016010.1\|WP_001031038.1\|577139_578642_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP016010.1\|WP_001670767.1\|583572_585708_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP016010.1\|WP_000105461.1\|576659_577112_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79
NZ_CP016010.1\|WP_000133064.1\|578666_581345_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0

>NZ_CP016010.1|WP_010723222.1|586807_586888_+|protein-YrbN
MKIADQFHDELCRLAAINFEAHVLHG
>NZ_CP016010.1|WP_000802069.1|585817_586702_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NZ_CP016010.1|WP_001670767.1|583572_585708_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE
>NZ_CP016010.1|WP_000059465.1|583061_583331_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP016010.1|WP_000089674.1|581966_582911_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA
>NZ_CP016010.1|WP_001040200.1|581565_581967_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMSRDLAYAKVFVTFLNDQDEAAVKNGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NZ_CP016010.1|WP_000133064.1|578666_581345_+|translation-initiation-factor-IF-2
MTDVTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NZ_CP016010.1|WP_001031038.1|577139_578642_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP016010.1|WP_000105461.1|576659_577112_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP016010.1|WP_000207657.1|574688_576032_-|argininosuccinate-synthase
MTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEVVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKPERLTMEKGDSVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKGK
>NZ_CP016010.1|WP_000224381.1|588923_590168_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNIVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVTPTTLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALVLYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPMIGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIVLILLFGVGNALVHILSSFNLLPVYQ
>NZ_CP016010.1|WP_000130411.1|590258_591266_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIPFSALDLAPIPEGASAKEAFTHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEQVPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTQFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFWSPSEQYGVQQALSMSLVGDKAKVRHGLESILRETQADEIMVNGQIFDHQARLHSFDLAMDVKQELLG
>NZ_CP016010.1|WP_014343907.1|591443_592340_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVVLSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPLPLAAHSDCNGYWKRLAGLELQA
>NZ_CP016010.1|WP_000421309.1|592330_593326_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP016010.1|WP_000884721.1|593542_594067_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMKNSPETKQTSVGEPC
>NZ_CP016010.1|WP_000908562.1|594060_594564_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NZ_CP016010.1|WP_000928379.1|594550_594868_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND
>NZ_CP016010.1|WP_000380404.1|594905_595349_+|YhbP-family-protein
MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALYLLTDDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYLRRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA
>NZ_CP016010.1|WP_000037599.1|595328_595847_-|protein/nucleic-acid-deglycase
MSKKIAVLITDEFEDSEFTSPAAEFRQAGHEVITIEKEAGKTVKGKKGEASVTIDKAIDDVRPDEFDALLLPGGHSPDYLRGDSRFVDFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>NZ_CP016010.1|WP_001532495.1|595977_596613_+|NAD(P)H-binding-protein
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMVVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAG

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Crispr_ID: NZ_CP016010_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016010_2

936248-937496

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

20 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP016010_2

>merge|NZ_CP016010|2|936248-937496|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGTTGCGTATTTCGATTGTCTGGACATTTCGTACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTTCCTGCTGATTTTCTGCGTCTACTGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGAATATGATTTATATAGAACCAATGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGCGTGTGTTGTTGAGGATCAGTCTGGAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGCCATGTTCTTTTCCCTCTAAAAAATCCGGTGTTCCCCGCGCCAGCGGGGATAAACCCGTTGCTCAAAAAACTGAACGAGGGTAACTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATATCCACTTAAACACAACCATTATTCGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAACAGAAGAACGGCAAGCGGCACCTCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCCGTCAGGTTGGATCGGATGGCATTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTTCATTGCGCAGGGTATGCAGTCGGTTTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCAGCGCGGTATTGAGGCCGGGGACCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGACGTTTTAACAGGGTAATATTTACTTAATTATGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTACTTTATTATCTCTCGCATAGACCCGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTCATTTTAAAGAATCCCGTTAAACAACACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP016010|2|2|936248-937496|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGTATTTCGATTGTCTGGACATTTCGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTTCCTGCTGATTTTCTGCGTCTACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAATATGATTTATATAGAACCAATGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATCCACTTAAACACAACCATTATTCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTTTAACAGGGTAATATTTACTTAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACTTTATTATCTCTCGCATAGACCCGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCATTTTAAAGAATCCCGTTAAACAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP016010|2|1|936248-937496|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGCGTATTTCGATTGTCTGGACATTTCGTAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTTCCTGCTGATTTTCTGCGTCTACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGAATATGATTTATATAGAACCAATGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGCCATGTTCTTTTCCCTCTAAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATCCACTTAAACACAACCATTATTCGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTTTAACAGGGTAATATTTACTTAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACTTTATTATCTCTCGCATAGACCCGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCATTTTAAAGAATCCCGTTAAACAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP016010|2|1|936309-936641|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGCTTCCTGCTGATTTTCTGCGTCTACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAGAATATGATTTATATAGAACCAATGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGGGCCATGTTCTTTTCCCTCTAAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACC	CGTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCGATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATATCCACTTAAACACAACCATTATTCGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTTTAACAGGGTAATATTTACTTAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACTTTATTATCTCTCGCATAGACCCGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCATTTTAAAGAATCCCGTTAAACAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA


>NZ_CP016010|2|2|936736-937435|PILER-CR
	GTGCTTCCTGCTGATTTTCTGCGTCTACTGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAGAATATGATTTATATAGAACCAATGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGGCGTGTGTTGTTGAGGATCAGTCTGGAGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGGGCCATGTTCTTTTCCCTCTAAAAAATCCG
GTGTTCCCCGCGCCAGCGGGGATAAACC	CGTTGCTCAAAAAACTGAACGAGGGTAACTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCGATTGTGTTGTCGCCGCTAGTGGCTTGGGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATATCCACTTAAACACAACCATTATTCGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGTCAGGTTGGATCGGATGGCATTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGTTTTAACAGGGTAATATTTACTTAATTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACTTTATTATCTCTCGCATAGACCCGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTCATTTTAAAGAATCCCGTTAAACAACAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016010.1\|WP_000046856.1\|926046_927342_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP016010.1\|WP_001208002.1\|937593_938391_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP016010.1\|WP_001532579.1\|930033_930330_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP016010.1\|WP_000706493.1\|922046_923189_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP016010.1\|WP_000210924.1\|939264_941064_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP016010.1\|WP_000029748.1\|945195_947859_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP016010.1\|WP_000080405.1\|942851_943586_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP016010.1\|WP_000210449.1\|931097_931898_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP016010.1\|WP_001199961.1\|935279_935951_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP016010.1\|WP_000036734.1\|933845_935144_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP016010.1\|WP_000108313.1\|938478_938841_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP016010.1\|WP_000029526.1\|949426_949975_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP016010.1\|WP_000480218.1\|929711_930068_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP016010.1\|WP_000210863.1\|932125_933763_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP016010.1\|WP_000186400.1\|923232_925989_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP016010.1\|WP_001145544.1\|943798_944752_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP016010.1\|WP_001290655.1\|941063_942776_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP016010.1\|WP_000226838.1\|927393_929628_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP016010.1\|WP_000206421.1\|949988_951047_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP016010.1\|WP_000368586.1\|947870_949430_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192

Protein	Function_ID	Function_description	E-value
NZ_CP016010.1\|WP_000046856.1\|926046_927342_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP016010.1\|WP_001208002.1\|937593_938391_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP016010.1\|WP_001532579.1\|930033_930330_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
NZ_CP016010.1\|WP_000706493.1\|922046_923189_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP016010.1\|WP_000210924.1\|939264_941064_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP016010.1\|WP_000029748.1\|945195_947859_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP016010.1\|WP_000080405.1\|942851_943586_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.61797e-139
NZ_CP016010.1\|WP_000210449.1\|931097_931898_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NZ_CP016010.1\|WP_001199961.1\|935279_935951_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP016010.1\|WP_000036734.1\|933845_935144_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP016010.1\|WP_000108313.1\|938478_938841_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP016010.1\|WP_000029526.1\|949426_949975_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.80691e-33
NZ_CP016010.1\|WP_000480218.1\|929711_930068_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP016010.1\|WP_000210863.1\|932125_933763_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP016010.1\|WP_000186400.1\|923232_925989_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP016010.1\|WP_001145544.1\|943798_944752_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP016010.1\|WP_001290655.1\|941063_942776_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP016010.1\|WP_000226838.1\|927393_929628_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP016010.1\|WP_000206421.1\|949988_951047_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	9.1402e-138
NZ_CP016010.1\|WP_000368586.1\|947870_949430_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	5.17383e-173

>NZ_CP016010.1|WP_001199961.1|935279_935951_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP016010.1|WP_000036734.1|933845_935144_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP016010.1|WP_000210863.1|932125_933763_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP016010.1|WP_000210449.1|931097_931898_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP016010.1|WP_001532579.1|930033_930330_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>NZ_CP016010.1|WP_000480218.1|929711_930068_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP016010.1|WP_000226838.1|927393_929628_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP016010.1|WP_000046856.1|926046_927342_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP016010.1|WP_000186400.1|923232_925989_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP016010.1|WP_000706493.1|922046_923189_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATVGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>NZ_CP016010.1|WP_001208002.1|937593_938391_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP016010.1|WP_000108313.1|938478_938841_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP016010.1|WP_000210924.1|939264_941064_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDELGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP016010.1|WP_001290655.1|941063_942776_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP016010.1|WP_000080405.1|942851_943586_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP016010.1|WP_001145544.1|943798_944752_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP016010.1|WP_000029748.1|945195_947859_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMEKTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCVAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP016010.1|WP_000368586.1|947870_949430_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP016010.1|WP_000029526.1|949426_949975_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NZ_CP016010.1|WP_000206421.1|949988_951047_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA

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Crispr_ID: NZ_CP016010_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016010_3

953743-954686

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

15 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP016010_3

>merge|NZ_CP016010|3|953743-954686|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCATCTTTTACGCATGTTGATGTGCGTTCAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATCGTCAATAAAATTATTGGCGCGCCATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTATAAGGCGGTAACGGCGAAAACATATGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCACGATCTACAGTCCAGCTATTCGGGATGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTTTGCCTCCAGCGCGAACAGCATGGCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCGACTCGCCAACCTGGTCTATGTGCTCTATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGGGTGATAACCGCCTCGCTGAACGCTACGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTGAAAAATTGCGGTTCGTCCTCCTCATCGTGTGTTCCCCGCGCCAGCGGGGATAAACCGACTAACGAAAGATTAAACCAGCGCATTGAGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCATTCGCTCAATAGCGGCCCGCGTGGCGGTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGATTATGTCCTCTAAAGACTGGCTAATCACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGCCCTGCGTGATTTTGAAAATCTGGTGGAGTGTTCCCCGCGCCAGCGGGGATAAGCCGTTGAATACGTCGCGATACCAGTCACTCCGGAAGTCTTCCCCGCGCTAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP016010|3|3|953743-954625|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCTTTTACGCATGTTGATGTGCGTTCAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCGTCAATAAAATTATTGGCGCGCCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTATAAGGCGGTAACGGCGAAAACATATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACGATCTACAGTCCAGCTATTCGGGATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTGCCTCCAGCGCGAACAGCATGGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGACTCGCCAACCTGGTCTATGTGCTCTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGTGATAACCGCCTCGCTGAACGCTACGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGAAAAATTGCGGTTCGTCCTCCTCATCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTAACGAAAGATTAAACCAGCGCATTGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATTATGTCCTCTAAAGACTGGCTAATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCCTGCGTGATTTTGAAAATCTGGTGGA
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	TTGAATACGTCGCGATACCAGTCACTCCGGAA
GTCTTCCCCGCGCTAGCGGGGATAAACCG

>NZ_CP016010|3|3|953743-954686|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCTTTTACGCATGTTGATGTGCGTTCAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCGTCAATAAAATTATTGGCGCGCCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTATAAGGCGGTAACGGCGAAAACATATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACGATCTACAGTCCAGCTATTCGGGATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTGCCTCCAGCGCGAACAGCATGGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGACTCGCCAACCTGGTCTATGTGCTCTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGTGATAACCGCCTCGCTGAACGCTACGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGAAAAATTGCGGTTCGTCCTCCTCATCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTAACGAAAGATTAAACCAGCGCATTGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATTATGTCCTCTAAAGACTGGCTAATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCCTGCGTGATTTTGAAAATCTGGTGGA
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	TTGAATACGTCGCGATACCAGTCACTCCGGAA
GTCTTCCCCGCGCTAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP016010|3|2|953743-954686|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCCTGTAGCGTGGGGGCGTTGGGTAGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCTTTTACGCATGTTGATGTGCGTTCAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATCGTCAATAAAATTATTGGCGCGCCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTATAAGGCGGTAACGGCGAAAACATATGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCACGATCTACAGTCCAGCTATTCGGGATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTTTGCCTCCAGCGCGAACAGCATGGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCGACTCGCCAACCTGGTCTATGTGCTCTAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGTGATAACCGCCTCGCTGAACGCTACGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTGAAAAATTGCGGTTCGTCCTCCTCATCGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACTAACGAAAGATTAAACCAGCGCATTGAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGATTATGTCCTCTAAAGACTGGCTAATCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGCCCTGCGTGATTTTGAAAATCTGGTGGA
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	TTGAATACGTCGCGATACCAGTCACTCCGGAA
GTCTTCCCCGCGCTAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016010.1\|WP_000490481.1\|954700_955747_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP016010.1\|WP_000741650.1\|959841_960552_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP016010.1\|WP_000517480.1\|959511_959823_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP016010.1\|WP_001537530.1\|958997_959321_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP016010.1\|WP_001221537.1\|962057_962819_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP016010.1\|WP_000029748.1\|945195_947859_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP016010.1\|WP_000080405.1\|942851_943586_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP016010.1\|WP_000085110.1\|951057_951804_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP016010.1\|WP_000281481.1\|951785_952436_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP016010.1\|WP_001173663.1\|958341_958947_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP016010.1\|WP_000206421.1\|949988_951047_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP016010.1\|WP_001518648.1\|953352_953646_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP016010.1\|WP_001145544.1\|943798_944752_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP016010.1\|WP_001092256.1\|956915_958355_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP016010.1\|WP_000029526.1\|949426_949975_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP016010.1\|WP_000144835.1\|952432_953353_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP016010.1\|WP_001219244.1\|960551_961031_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP016010.1\|WP_000134246.1\|961027_962077_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP016010.1\|WP_000372381.1\|955997_956906_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP016010.1\|WP_000368586.1\|947870_949430_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192

Protein	Function_ID	Function_description	E-value
NZ_CP016010.1\|WP_000490481.1\|954700_955747_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP016010.1\|WP_000741650.1\|959841_960552_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NZ_CP016010.1\|WP_000517480.1\|959511_959823_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP016010.1\|WP_001537530.1\|958997_959321_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP016010.1\|WP_001221537.1\|962057_962819_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	7.64916e-147
NZ_CP016010.1\|WP_000029748.1\|945195_947859_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP016010.1\|WP_000080405.1\|942851_943586_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.61797e-139
NZ_CP016010.1\|WP_000085110.1\|951057_951804_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.38373e-47
NZ_CP016010.1\|WP_000281481.1\|951785_952436_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	6.2871e-76
NZ_CP016010.1\|WP_001173663.1\|958341_958947_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP016010.1\|WP_000206421.1\|949988_951047_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	9.1402e-138
NZ_CP016010.1\|WP_001518648.1\|953352_953646_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP016010.1\|WP_001145544.1\|943798_944752_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP016010.1\|WP_001092256.1\|956915_958355_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP016010.1\|WP_000029526.1\|949426_949975_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.80691e-33
NZ_CP016010.1\|WP_000144835.1\|952432_953353_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.09819e-157
NZ_CP016010.1\|WP_001219244.1\|960551_961031_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP016010.1\|WP_000134246.1\|961027_962077_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP016010.1\|WP_000372381.1\|955997_956906_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP016010.1\|WP_000368586.1\|947870_949430_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	5.17383e-173

>NZ_CP016010.1|WP_001518648.1|953352_953646_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP016010.1|WP_000144835.1|952432_953353_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIKPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP016010.1|WP_000281481.1|951785_952436_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTICKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLRETSVDAYRQQQIHREKSRQMIQFSSVDYTGVLVLNDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP016010.1|WP_000085110.1|951057_951804_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGNAADVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP016010.1|WP_000206421.1|949988_951047_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP016010.1|WP_000029526.1|949426_949975_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NZ_CP016010.1|WP_000368586.1|947870_949430_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFANAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP016010.1|WP_000029748.1|945195_947859_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSARKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMEKTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCVAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP016010.1|WP_001145544.1|943798_944752_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP016010.1|WP_000080405.1|942851_943586_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP016010.1|WP_000490481.1|954700_955747_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP016010.1|WP_000372381.1|955997_956906_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDHFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP016010.1|WP_001092256.1|956915_958355_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP016010.1|WP_001173663.1|958341_958947_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP016010.1|WP_001537530.1|958997_959321_+|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP016010.1|WP_000517480.1|959511_959823_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP016010.1|WP_000741650.1|959841_960552_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP016010.1|WP_001219244.1|960551_961031_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP016010.1|WP_000134246.1|961027_962077_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP016010.1|WP_001221537.1|962057_962819_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016010_2	2.9\|936765\|32\|NZ_CP016010\|CRISPRCasFinder,CRT,PILER-CR	936765-936796	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
NZ_CP016010_2	2.9\|936765\|32\|NZ_CP016010\|CRISPRCasFinder,CRT,PILER-CR	936765-936796	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
NZ_CP016010_2	2.9\|936765\|32\|NZ_CP016010\|CRISPRCasFinder,CRT,PILER-CR	936765-936796	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
NZ_CP016010_3	3.3\|953894\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953894-953925	32	NZ_CP050083	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence	24085-24116	7	0.781
NZ_CP016010_2	2.2\|936338\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936338-936369	32	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	824700-824731	8	0.75
NZ_CP016010_2	2.5\|936521\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936521-936552	32	NZ_CP042626	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence	1117-1148	8	0.75
NZ_CP016010_2	2.21\|936337\|33\|NZ_CP016010\|PILER-CR	936337-936369	33	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	824700-824732	8	0.758
NZ_CP016010_3	3.1\|953772\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953772-953803	32	NZ_CP032319	Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence	4010-4041	8	0.75
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1288773-1288804	8	0.75
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	1033889-1033920	8	0.75
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	809005-809036	8	0.75
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1288780-1288811	8	0.75
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1537348-1537379	8	0.75
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1537292-1537323	8	0.75
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	1215720-1215751	8	0.75
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	1024904-1024935	8	0.75
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1162298-1162329	8	0.75
NZ_CP016010_3	3.7\|954138\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954138-954169	32	NZ_CP023524	Burkholderia gladioli pv. gladioli strain FDAARGOS_389 plasmid unnamed, complete sequence	81762-81793	8	0.75
NZ_CP016010_3	3.7\|954138\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954138-954169	32	NZ_CP032326	Azospirillum brasilense strain MTCC4035 plasmid p5, complete sequence	2310-2341	8	0.75
NZ_CP016010_3	3.7\|954138\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954138-954169	32	NZ_CP032326	Azospirillum brasilense strain MTCC4035 plasmid p5, complete sequence	359399-359430	8	0.75
NZ_CP016010_3	3.8\|954199\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954199-954230	32	NC_016907	Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence	64697-64728	8	0.75
NZ_CP016010_3	3.8\|954199\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954199-954230	32	NZ_CP010858	Marinovum algicola DG 898 plasmid pMaD3	3485-3516	8	0.75
NZ_CP016010_2	2.1\|936277\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936277-936308	32	MT711528	Escherichia phage vB_EcoS_fTaEco03, complete genome	12261-12292	9	0.719
NZ_CP016010_2	2.1\|936277\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936277-936308	32	MT711525	Escherichia phage vB_EcoS_fKuEco01, complete genome	11823-11854	9	0.719
NZ_CP016010_2	2.1\|936277\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936277-936308	32	GU196278	Escherichia phage K1H, complete genome	12039-12070	9	0.719
NZ_CP016010_2	2.1\|936277\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936277-936308	32	NC_027993	Escherichia phage K1G, complete genome	13924-13955	9	0.719
NZ_CP016010_2	2.1\|936277\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936277-936308	32	MT711527	Escherichia phage vB_EcoS_fTaEco01, complete genome	11822-11853	9	0.719
NZ_CP016010_2	2.3\|936399\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936399-936430	32	NC_011255	Borrelia recurrentis A1 plasmid pl35, complete sequence	27906-27937	9	0.719
NZ_CP016010_2	2.3\|936399\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936399-936430	32	NC_011249	Borrelia duttonii Ly plasmid pl36, complete sequence	31225-31256	9	0.719
NZ_CP016010_2	2.3\|936399\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936399-936430	32	NZ_CP032297	Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence	360899-360930	9	0.719
NZ_CP016010_2	2.3\|936399\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936399-936430	32	NZ_CP034837	Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence	234035-234066	9	0.719
NZ_CP016010_2	2.9\|936765\|32\|NZ_CP016010\|CRISPRCasFinder,CRT,PILER-CR	936765-936796	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
NZ_CP016010_2	2.9\|936765\|32\|NZ_CP016010\|CRISPRCasFinder,CRT,PILER-CR	936765-936796	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
NZ_CP016010_2	2.9\|936765\|32\|NZ_CP016010\|CRISPRCasFinder,CRT,PILER-CR	936765-936796	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
NZ_CP016010_2	2.14\|937070\|32\|NZ_CP016010\|CRISPRCasFinder,CRT,PILER-CR	937070-937101	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NZ_CP016010_2	2.24\|936520\|33\|NZ_CP016010\|PILER-CR	936520-936552	33	NZ_CP042626	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence	1116-1148	9	0.727
NZ_CP016010_3	3.1\|953772\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953772-953803	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	264920-264951	9	0.719
NZ_CP016010_3	3.3\|953894\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953894-953925	32	NZ_CP031397	Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence	50720-50751	9	0.719
NZ_CP016010_3	3.3\|953894\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953894-953925	32	NZ_CP019854	Borreliella burgdorferi plasmid lp54, complete sequence	50432-50463	9	0.719
NZ_CP016010_3	3.3\|953894\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953894-953925	32	NZ_CP019765	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence	50432-50463	9	0.719
NZ_CP016010_3	3.3\|953894\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953894-953925	32	NC_011784	Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence	50419-50450	9	0.719
NZ_CP016010_3	3.3\|953894\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953894-953925	32	NZ_CP017218	Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence	3209-3240	9	0.719
NZ_CP016010_3	3.3\|953894\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953894-953925	32	NC_013130	Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence	50566-50597	9	0.719
NZ_CP016010_3	3.3\|953894\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953894-953925	32	NC_013129	Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence	49711-49742	9	0.719
NZ_CP016010_3	3.3\|953894\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953894-953925	32	NC_001857	Borreliella burgdorferi B31 plasmid lp54, complete sequence	50439-50470	9	0.719
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP013071	Sphingobium indicum B90A plasmid pSRL1, complete sequence	95275-95306	9	0.719
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP016593	Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence	89822-89853	9	0.719
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NC_017386	Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence	25018-25049	9	0.719
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP032328	Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence	137631-137662	9	0.719
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NC_014621	Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence	260283-260314	9	0.719
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP012909	Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence	89825-89856	9	0.719
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP035512	Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence	36173-36204	9	0.719
NZ_CP016010_3	3.14\|954565\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954565-954596	32	NZ_CP050096	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence	151458-151489	9	0.719
NZ_CP016010_3	3.14\|954565\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954565-954596	32	NZ_CP050102	Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence	132694-132725	9	0.719
NZ_CP016010_3	3.14\|954565\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954565-954596	32	NZ_CP050107	Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence	169943-169974	9	0.719
NZ_CP016010_3	3.14\|954565\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954565-954596	32	NZ_CP050112	Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence	169942-169973	9	0.719
NZ_CP016010_3	3.14\|954565\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954565-954596	32	NZ_CP048285	Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence	30547-30578	9	0.719
NZ_CP016010_2	2.5\|936521\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936521-936552	32	LR026976	Bacillus pumilus isolate 1 genome assembly, plasmid: p576	23626-23657	10	0.688
NZ_CP016010_2	2.5\|936521\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	936521-936552	32	NC_022882	Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence	54509-54540	10	0.688
NZ_CP016010_2	2.15\|937131\|32\|NZ_CP016010\|CRISPRCasFinder,CRT,PILER-CR	937131-937162	32	KF751793	Campylobacter phage CJIE4-1, complete genome	18118-18149	10	0.688
NZ_CP016010_2	2.20\|937436\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	937436-937467	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NZ_CP016010_3	3.1\|953772\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953772-953803	32	NZ_CP006373	Aureimonas sp. AU20 plasmid pAU20f, complete sequence	26111-26142	10	0.688
NZ_CP016010_3	3.2\|953833\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	953833-953864	32	CP009871	Pantoea sp. PSNIH2 plasmid pPSP-cd6, complete sequence	51629-51660	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	321926-321957	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	1419399-1419430	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	1381773-1381804	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	320882-320913	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	1485620-1485651	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1558385-1558416	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	316953-316984	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	316127-316158	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	985870-985901	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	170280-170311	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	933963-933994	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	662756-662787	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	566677-566708	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	1106266-1106297	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	198239-198270	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	646299-646330	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1104921-1104952	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	698669-698700	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	470049-470080	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	320640-320671	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP014797	Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence	184288-184319	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1537726-1537757	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	990467-990498	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	1314080-1314111	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	1419404-1419435	10	0.688
NZ_CP016010_3	3.6\|954077\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954077-954108	32	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	405660-405691	10	0.688
NZ_CP016010_3	3.8\|954199\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954199-954230	32	NC_005262	Burkholderia cepacia phage Bcep22, complete genome	17206-17237	10	0.688
NZ_CP016010_3	3.8\|954199\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954199-954230	32	NZ_CP015746	Shinella sp. HZN7 plasmid pShin-10, complete sequence	61466-61497	10	0.688
NZ_CP016010_3	3.8\|954199\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954199-954230	32	NZ_CP019446	Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-1, complete sequence	17753-17784	10	0.688
NZ_CP016010_3	3.8\|954199\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954199-954230	32	NZ_CP032923	Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence	101360-101391	10	0.688
NZ_CP016010_3	3.11\|954382\|32\|NZ_CP016010\|PILER-CR,CRISPRCasFinder,CRT	954382-954413	32	NC_019957	Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence	63429-63460	10	0.688
NZ_CP016010_2	2.9\|936765\|32\|NZ_CP016010\|CRISPRCasFinder,CRT,PILER-CR	936765-936796	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
NZ_CP016010_2	2.9\|936765\|32\|NZ_CP016010\|CRISPRCasFinder,CRT,PILER-CR	936765-936796	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656
NZ_CP016010_3	3.15\|954626\|32\|NZ_CP016010\|CRISPRCasFinder,CRT	954626-954657	32	CP054927	Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence	47822-47853	11	0.656

1. spacer 2.9|936765|32|NZ_CP016010|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

2. spacer 2.9|936765|32|NZ_CP016010|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcaccgccgatcctttcaccgccgcc	Protospacer
********* ********* ****. *.  **

3. spacer 2.9|936765|32|NZ_CP016010|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

4. spacer 3.3|953894|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 7, identity: 0.781

aaatcgtcaataaaattattggcgc--gccatcc	CRISPR spacer
ggatcgtcaatgaatttattggcgctggctat--	Protospacer
..*********.** **********  **.**

5. spacer 2.2|936338|32|NZ_CP016010|CRISPRCasFinder,CRT matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 8, identity: 0.75

tgcttcctgctgattttctgcgtctactggat	CRISPR spacer
ctcatcctgcagattttcttcgtctactatgt	Protospacer
. * ****** ******** ********. .*

6. spacer 2.5|936521|32|NZ_CP016010|CRISPRCasFinder,CRT matches to NZ_CP042626 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence) position: , mismatch: 8, identity: 0.75

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
ataaacatgattttttccctctaaaaaatccc	Protospacer
  .. **** *.*******************

7. spacer 2.21|936337|33|NZ_CP016010|PILER-CR matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 8, identity: 0.758

gtgcttcctgctgattttctgcgtctactggat	CRISPR spacer
gctcatcctgcagattttcttcgtctactatgt	Protospacer
*. * ****** ******** ********. .*

8. spacer 3.1|953772|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032319 (Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ccagcctg--tagcgtgggggcgttgggtagcct	CRISPR spacer
--ggtgtggccagcgtggtagcgttgggtagcct	Protospacer
  .*. **  .******* .**************

9. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
acgctggcgtccagcgcgagcagcatggccca	Protospacer
*. .* ** **********.********* *

10. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
acgctggcgtccagcgcgagcagcatggccca	Protospacer
*. .* ** **********.********* *

11. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
acgctggcgtccagcgcgagcagcatggccca	Protospacer
*. .* ** **********.********* *

12. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
acgctggcgtccagcgcgagcagcatggccca	Protospacer
*. .* ** **********.********* *

13. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
acgctggcgtccagcgcgagcagcatggccca	Protospacer
*. .* ** **********.********* *

14. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
acgctggcgtccagcgcgagcagcatggccca	Protospacer
*. .* ** **********.********* *

15. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
acgctggcgtccagcgcgagcagcatggccca	Protospacer
*. .* ** **********.********* *

16. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
acgctggcgtccagcgcgagcagcatggccca	Protospacer
*. .* ** **********.********* *

17. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
acgctggcgtccagcgcgagcagcatggccca	Protospacer
*. .* ** **********.********* *

18. spacer 3.7|954138|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023524 (Burkholderia gladioli pv. gladioli strain FDAARGOS_389 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tccgactcgccaacctggtctatgtgctctat	CRISPR spacer
ccctactggccaacctggtctatgtgcagccg	Protospacer
.** *** *******************  .

19. spacer 3.7|954138|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032326 (Azospirillum brasilense strain MTCC4035 plasmid p5, complete sequence) position: , mismatch: 8, identity: 0.75

tccgactcgccaacctggtctatgtgctctat	CRISPR spacer
cgctgggcgccaacctgttctatctgctctat	Protospacer
. * .  ********** ***** ********

20. spacer 3.7|954138|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032326 (Azospirillum brasilense strain MTCC4035 plasmid p5, complete sequence) position: , mismatch: 8, identity: 0.75

tccgactcgccaacctggtctatgtgctctat	CRISPR spacer
cgctgggcgccaacctgttctatctgctctat	Protospacer
. * .  ********** ***** ********

21. spacer 3.8|954199|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_016907 (Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence) position: , mismatch: 8, identity: 0.75

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
cggggtgatcaccgcctcgcggaaggtcttgc	Protospacer
 ******** ********** *** *.. .**

22. spacer 3.8|954199|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010858 (Marinovum algicola DG 898 plasmid pMaD3) position: , mismatch: 8, identity: 0.75

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
cgtggtgatcaccggctcgctgaacggcctgc	Protospacer
 * ****** **** *********** . .**

23. spacer 2.1|936277|32|NZ_CP016010|CRISPRCasFinder,CRT matches to MT711528 (Escherichia phage vB_EcoS_fTaEco03, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

24. spacer 2.1|936277|32|NZ_CP016010|CRISPRCasFinder,CRT matches to MT711525 (Escherichia phage vB_EcoS_fKuEco01, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

25. spacer 2.1|936277|32|NZ_CP016010|CRISPRCasFinder,CRT matches to GU196278 (Escherichia phage K1H, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

26. spacer 2.1|936277|32|NZ_CP016010|CRISPRCasFinder,CRT matches to NC_027993 (Escherichia phage K1G, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

27. spacer 2.1|936277|32|NZ_CP016010|CRISPRCasFinder,CRT matches to MT711527 (Escherichia phage vB_EcoS_fTaEco01, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...*

28. spacer 2.3|936399|32|NZ_CP016010|CRISPRCasFinder,CRT matches to NC_011255 (Borrelia recurrentis A1 plasmid pl35, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
aaaaaatatgatttatatagaaataatttata	Protospacer
. *.****************** .***  *.

29. spacer 2.3|936399|32|NZ_CP016010|CRISPRCasFinder,CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
aaaaaatatgatttatatagaaataatttata	Protospacer
. *.****************** .***  *.

30. spacer 2.3|936399|32|NZ_CP016010|CRISPRCasFinder,CRT matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
caccaataggatttatattgaaccaataatcc	Protospacer
    **** ********* ********.* *.

31. spacer 2.3|936399|32|NZ_CP016010|CRISPRCasFinder,CRT matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
caccaataggatttatattgaaccaataatcc	Protospacer
    **** ********* ********.* *.

32. spacer 2.9|936765|32|NZ_CP016010|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcagcgccgagcagttcagcaaactg	Protospacer
**************** * *****  . .*.

33. spacer 2.9|936765|32|NZ_CP016010|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
gcggcatcagcgccgaccggttcaccgtcagg	Protospacer
 ***************.* *****. **

34. spacer 2.9|936765|32|NZ_CP016010|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatgagcgccgatcagttcgacgccctg	Protospacer
******* ********** ****.  *. *.

35. spacer 2.14|937070|32|NZ_CP016010|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

36. spacer 2.24|936520|33|NZ_CP016010|PILER-CR matches to NZ_CP042626 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence) position: , mismatch: 9, identity: 0.727

gcgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
aataaacatgattttttccctctaaaaaatccc	Protospacer
.  .. **** *.*******************

37. spacer 3.1|953772|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagcctgtagcgtgggggcgttgggtagcct	CRISPR spacer
cggccctgtagcggaggggcgttgggtcccgg	Protospacer
* . ********* .************  *

38. spacer 3.3|953894|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031397 (Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

39. spacer 3.3|953894|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019854 (Borreliella burgdorferi plasmid lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

40. spacer 3.3|953894|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019765 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

41. spacer 3.3|953894|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_011784 (Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

42. spacer 3.3|953894|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017218 (Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

43. spacer 3.3|953894|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_013130 (Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

44. spacer 3.3|953894|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_013129 (Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

45. spacer 3.3|953894|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_001857 (Borreliella burgdorferi B31 plasmid lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

46. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013071 (Sphingobium indicum B90A plasmid pSRL1, complete sequence) position: , mismatch: 9, identity: 0.719

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
tcccgcgcccccagcgcgaacagcatggccgc	Protospacer
 ... .***.*******************  *

47. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016593 (Ketogulonicigenium vulgare strain SKV plasmid pKvSKV1, complete sequence) position: , mismatch: 9, identity: 0.719

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agaagcgccttcagcgcgaacaggatggcagc	Protospacer
*    .****.************ *****. *

48. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_017386 (Ketogulonicigenium vulgare WSH-001 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agaagcgccttcagcgcgaacaggatggcagc	Protospacer
*    .****.************ *****. *

49. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032328 (Azospirillum brasilense strain MTCC4035 plasmid p7, complete sequence) position: , mismatch: 9, identity: 0.719

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
aacagcgccgccagcgcgaacagcatcgccgc	Protospacer
* .  .*** **************** **  *

50. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_014621 (Ketogulonicigenium vulgare Y25 plasmid pYP1, complete sequence) position: , mismatch: 9, identity: 0.719

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agaagcgccttcagcgcgaacaggatggcagc	Protospacer
*    .****.************ *****. *

51. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012909 (Ketogulonicigenium vulgare strain Hbe602 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.719

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agaagcgccttcagcgcgaacaggatggcagc	Protospacer
*    .****.************ *****. *

52. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035512 (Haematobacter massiliensis strain OT1 plasmid pOT1-2, complete sequence) position: , mismatch: 9, identity: 0.719

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agaagcgccttcagcgcgaacaggatggcagc	Protospacer
*    .****.************ *****. *

53. spacer 3.14|954565|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050096 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

54. spacer 3.14|954565|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050102 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

55. spacer 3.14|954565|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050107 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

56. spacer 3.14|954565|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050112 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

57. spacer 3.14|954565|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048285 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **

58. spacer 2.5|936521|32|NZ_CP016010|CRISPRCasFinder,CRT matches to LR026976 (Bacillus pumilus isolate 1 genome assembly, plasmid: p576) position: , mismatch: 10, identity: 0.688

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
ctctttttgatcttttcactctaaaaaatctc	Protospacer
*   .. ** ******* ************.

59. spacer 2.5|936521|32|NZ_CP016010|CRISPRCasFinder,CRT matches to NC_022882 (Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence) position: , mismatch: 10, identity: 0.688

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
aaacacgagttcttttcgctgtaaaaaatcca	Protospacer
 ..  *. ********* ** **********.

60. spacer 2.15|937131|32|NZ_CP016010|CRISPRCasFinder,CRT,PILER-CR matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 10, identity: 0.688

acgttttaacagggtaatatttacttaattat	CRISPR spacer
ttgcattagcagtgtaatatttacttaaagca	Protospacer
 .*. ***.*** ***************

61. spacer 2.20|937436|32|NZ_CP016010|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

62. spacer 3.1|953772|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006373 (Aureimonas sp. AU20 plasmid pAU20f, complete sequence) position: , mismatch: 10, identity: 0.688

ccagcctgtagcgtgggggcgttgggtagcct	CRISPR spacer
gaacgtcttagcgtcggggcgttgggtcgcca	Protospacer
  *  .. ****** ************ ***

63. spacer 3.2|953833|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to CP009871 (Pantoea sp. PSNIH2 plasmid pPSP-cd6, complete sequence) position: , mismatch: 10, identity: 0.688

catcttttacgcatgttgatgtgcgttcaaat	CRISPR spacer
ccgattttacgcatgttgctgcgcgttgccgg	Protospacer
*   ************** **.*****   .

64. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

65. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

66. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

67. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

68. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

69. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

70. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

71. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

72. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

73. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
aacaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

74. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

75. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

76. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

77. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

78. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

79. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

80. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

81. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

82. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

83. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

84. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014797 (Salipiger profundus strain JLT2016 plasmid pTPRO1, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
gtcccggcctcctgcgcgatcagcatggcaag	Protospacer
.*... ****** ****** *********.

85. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

86. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
tgccccgggtccacctcgaacagcatggcgcc	Protospacer
  ....*  **** * ****************

87. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

88. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
agcaggcggtccagcgcgaccagcagggcgcc	Protospacer
* .      ********** ***** ******

89. spacer 3.6|954077|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 10, identity: 0.688

atttttgcctccagcgcgaacagcatggcgcc	CRISPR spacer
ggcgtcagttccagcgcgtccagcatggcgcc	Protospacer
. . *.. .*********  ************

90. spacer 3.8|954199|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 10, identity: 0.688

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
ctcggtgataacggccttgctgaacgcggtcg	Protospacer
   ********* ****.********* ..

91. spacer 3.8|954199|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015746 (Shinella sp. HZN7 plasmid pShin-10, complete sequence) position: , mismatch: 10, identity: 0.688

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
cagcccttgaaccgccaggctgaacgctacgc	Protospacer
 .*  .   *******  **************

92. spacer 3.8|954199|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019446 (Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-1, complete sequence) position: , mismatch: 10, identity: 0.688

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
tgatgtgataaccacatcgctgaacgccttca	Protospacer
 *. *********.* ***********. .

93. spacer 3.8|954199|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032923 (Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence) position: , mismatch: 10, identity: 0.688

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
ttcaccggcaaccgcatcgctgtacgctacgc	Protospacer
   . .*..****** ****** *********

94. spacer 3.11|954382|32|NZ_CP016010|PILER-CR,CRISPRCasFinder,CRT matches to NC_019957 (Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence) position: , mismatch: 10, identity: 0.688

cattcgctcaatagcggcccgcgtggcggtga	CRISPR spacer
agcgcgctcaatagcggaccgcgcggcaacgg	Protospacer
 .. ************* *****.***...*.

95. spacer 2.9|936765|32|NZ_CP016010|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

96. spacer 2.9|936765|32|NZ_CP016010|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

97. spacer 3.15|954626|32|NZ_CP016010|CRISPRCasFinder,CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aggggcgttccgcagtcggcaagggctgaaaa	CRISPR spacer
tcgggcatcccgcagtcggcaagggtgcggcg	Protospacer
  ****.*.****************.  .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1120146 : 1194722

Salmonella_phage(57.95%)

lysis,integrase,protease,tail,holin,capsid,terminase,portal,plate,transposase,head

attL 1161158:1161203|attR 1194792:1194837

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000537359.1\|1120146_1121322_-	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	1.4e-147	67.4
WP_001061331.1\|1121527_1122097_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	3.7e-90	81.3
WP_000210516.1\|1122098_1122539_-	hypothetical protein	A0A088CE95	Shigella_phage	3.1e-12	40.3
WP_000840609.1\|1122542_1123016_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.1e-66	78.1
WP_000125081.1\|1123015_1123330_-	hypothetical protein	I6RSM9	Salmonella_phage	3.4e-21	85.0
WP_001253786.1\|1123326_1123503_-	hypothetical protein	NA	NA	NA	NA
WP_000120457.1\|1123490_1124030_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	9.5e-80	81.0
WP_070810427.1\|1124158_1124986_-	DUF2303 family protein	Q8HAA2	Salmonella_phage	8.4e-144	94.2
WP_070810426.1\|1125042_1125414_-	hypothetical protein	Q8HAA1	Salmonella_phage	3.6e-54	85.4
WP_072600479.1\|1126442_1127135_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-88	70.9
WP_072600482.1\|1127232_1127478_+	helix-turn-helix transcriptional regulator	A0A0P0ZCZ7	Stx2-converting_phage	1.0e-17	54.3
WP_045445262.1\|1127488_1128040_+	hypothetical protein	Q8SBF4	Shigella_phage	7.0e-46	53.5
WP_003034732.1\|1128212_1128392_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	3.0e-14	73.1
WP_072600484.1\|1128381_1129239_+	conserved phage C-terminal domain-containing protein	A0A1C9IHW0	Salmonella_phage	2.0e-60	96.6
WP_072600486.1\|1129235_1130555_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	8.7e-119	52.5
WP_003034741.1\|1130551_1130938_+	RusA family crossover junction endodeoxyribonuclease	A0A192Y8N5	Salmonella_phage	4.1e-61	89.1
WP_072600488.1\|1130951_1131665_+	phage antirepressor KilAC domain-containing protein	G0ZND1	Cronobacter_phage	1.1e-56	53.7
WP_000609697.1\|1132647_1133217_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.5e-46	54.4
WP_000417508.1\|1133407_1133983_+	hypothetical protein	NA	NA	NA	NA
WP_076937917.1\|1134169_1134610_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	4.3e-14	31.5
WP_001283171.1\|1134771_1135158_+\|holin	phage holin family protein	A0A192Y8P2	Salmonella_phage	1.0e-56	93.0
WP_000250463.1\|1135144_1135426_+\|holin	phage holin family protein	A0A0U2SHD1	Escherichia_phage	3.1e-18	50.0
WP_072600490.1\|1135425_1136040_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	5.5e-92	80.4
WP_000522146.1\|1136047_1136317_+	hypothetical protein	G8C7W1	Escherichia_phage	2.2e-21	69.0
WP_001100261.1\|1136457_1136688_+	hypothetical protein	NA	NA	NA	NA
WP_000120194.1\|1136779_1137094_-	hypothetical protein	NA	NA	NA	NA
WP_000761930.1\|1137603_1137930_+	hypothetical protein	M9NZE9	Enterobacteria_phage	2.9e-07	80.0
WP_001670093.1\|1138113_1138602_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	6.3e-75	90.7
WP_001118990.1\|1138601_1140704_+\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	86.6
WP_001082414.1\|1140700_1140916_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.5e-25	82.9
WP_000054308.1\|1140912_1142421_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	4.2e-258	86.7
WP_001125851.1\|1142365_1144390_+\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	0.0e+00	84.7
WP_001097009.1\|1144481_1144808_+	DUF2190 family protein	K7PJY3	Enterobacterial_phage	2.4e-30	60.2
WP_000933904.1\|1144800_1145076_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.6e-25	61.5
WP_000023109.1\|1145088_1145643_+\|tail	phage tail protein	K7P7A8	Enterobacteria_phage	2.4e-62	76.7
WP_000797819.1\|1145639_1146038_+\|tail	tail protein	K7PHM6	Enterobacterial_phage	6.8e-43	62.0
WP_000211139.1\|1146045_1146783_+	Ig-like domain-containing protein	O64327	Escherichia_phage	3.6e-90	66.9
WP_000479023.1\|1146819_1147227_+\|tail	phage minor tail protein G	K7PM17	Enterobacteria_phage	3.8e-25	57.9
WP_071529728.1\|1147235_1147556_+\|tail	phage tail assembly protein T	K7PHE1	Enterobacteria_phage	2.1e-34	69.8
WP_000079422.1\|1147533_1150050_+\|tail	phage tail tape measure protein	K7PKR0	Enterobacteria_phage	1.0e-309	69.2
WP_000963482.1\|1150053_1150401_+\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	1.0e-39	69.6
WP_000056207.1\|1150397_1151153_+\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	1.8e-129	85.3
WP_001249174.1\|1151154_1151865_+	C40 family peptidase	K7P6F5	Enterobacteria_phage	1.1e-136	90.7
WP_000709674.1\|1151894_1152236_+	hypothetical protein	K7PLP0	Enterobacteria_phage	5.6e-54	92.9
WP_000659016.1\|1152279_1152885_+\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	1.4e-100	97.0
WP_001162257.1\|1152938_1156142_+	host specificity protein J	O64335	Escherichia_phage	0.0e+00	88.7
WP_001113924.1\|1156143_1157103_+	hypothetical protein	H6WRW5	Salmonella_phage	2.1e-175	94.4
WP_001272641.1\|1157113_1158295_+	hypothetical protein	S4TSP4	Salmonella_phage	1.2e-55	68.9
WP_000497432.1\|1158518_1158761_-	DinI family protein	Q6UAW0	Klebsiella_phage	3.4e-29	76.6
WP_072600492.1\|1159081_1159471_+	DNA polymerase V	Q1MVE7	Enterobacteria_phage	1.1e-50	71.3
WP_072600494.1\|1159658_1160864_-	DUF4236 domain-containing protein	NA	NA	NA	NA
1161158:1161203	attL	NA	NA	NA	NA
WP_001536726.1\|1161320_1162346_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	9.9e-203	100.0
WP_000052559.1\|1162349_1162982_-	helix-turn-helix domain-containing protein	A0A1S6KZZ7	Salmonella_phage	1.1e-66	58.6
WP_000102104.1\|1163098_1163338_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	8.8e-38	98.7
WP_000460862.1\|1163373_1163883_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	5.1e-83	92.9
WP_000957775.1\|1163890_1164124_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	3.6e-12	59.1
WP_000166366.1\|1164071_1164530_-	hypothetical protein	NA	NA	NA	NA
WP_000963195.1\|1164749_1165091_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.2e-49	85.0
WP_001244234.1\|1165158_1165392_+	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	2.0e-26	84.4
WP_072600496.1\|1165391_1165619_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	8.6e-35	92.0
WP_000104122.1\|1165615_1166473_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	9.3e-130	80.7
WP_072600498.1\|1166463_1168893_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	91.5
WP_001154433.1\|1169045_1169234_+	hypothetical protein	E5G6M0	Salmonella_phage	1.4e-27	100.0
WP_001217575.1\|1169244_1169478_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_023134870.1\|1169591_1170269_+	hypothetical protein	NA	NA	NA	NA
WP_078040414.1\|1170690_1171173_+	phosphoribosyltransferase	NA	NA	NA	NA
WP_072600503.1\|1171162_1172140_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	5.4e-25	33.2
WP_072600505.1\|1172166_1173192_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	9.0e-180	93.8
WP_072600507.1\|1173191_1174958_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.3
WP_001655635.1\|1175100_1175934_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	8.2e-123	91.0
WP_072600509.1\|1175950_1177015_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	2.5e-193	97.5
WP_023260028.1\|1177018_1177672_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.0e-112	98.2
WP_072600511.1\|1177765_1178230_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.7e-82	95.5
WP_000868184.1\|1178229_1178433_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000171565.1\|1178436_1178652_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_078040417.1\|1178632_1179142_+	lysozyme	A0A1S6KZY9	Salmonella_phage	5.4e-93	97.0
WP_072600513.1\|1179146_1179524_+	peptidase	A0A1S6KZZ2	Salmonella_phage	2.6e-60	96.0
WP_179127319.1\|1179520_1179949_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	1.5e-64	95.0
WP_072600517.1\|1180044_1180476_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-72	94.4
WP_063314686.1\|1180468_1180915_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.2e-64	87.0
WP_072600520.1\|1180983_1181562_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.2e-106	97.9
WP_000177404.1\|1181558_1181918_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	9.8e-57	95.8
WP_072600522.1\|1181904_1182813_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	8.5e-158	98.3
WP_001086807.1\|1182805_1183411_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.1e-116	98.0
WP_072600524.1\|1183407_1185213_+\|tail	phage tail protein	E5G6P0	Salmonella_phage	1.1e-217	74.8
WP_072600526.1\|1185212_1185788_+\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	1.7e-103	96.3
WP_015406347.1\|1186667_1186892_+	helix-turn-helix domain-containing protein	E5G6P5	Salmonella_phage	1.2e-33	97.3
WP_000046105.1\|1186994_1188167_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	4.1e-221	99.0
WP_001207654.1\|1188176_1188692_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.0e-91	98.8
WP_001280962.1\|1188746_1189049_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	2.5e-45	100.0
WP_000763317.1\|1189063_1189183_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	8.8e-15	97.4
WP_001282763.1\|1189175_1191983_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	99.4
WP_000980407.1\|1191979_1192465_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.7e-65	97.7
WP_001010541.1\|1192461_1193562_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	7.9e-190	96.7
WP_000972388.1\|1193628_1193847_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	8.3e-27	76.4
WP_001668082.1\|1194131_1194722_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	4.4e-46	75.9
1194792:1194837	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1723775 : 1732946

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569165.1\|1723775_1724723_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
WP_000824855.1\|1724706_1725438_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1725418_1725526_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1725585_1726317_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1\|1726539_1728225_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|1728221_1728941_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1728987_1729455_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001265355.1\|1729511_1730042_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|1730213_1730672_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195330.1\|1730912_1732946_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1807444 : 1817951

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001111836.1\|1807444_1808848_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
WP_000981469.1\|1809025_1809919_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697840.1\|1810295_1811381_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_001023659.1\|1811380_1812280_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000857530.1\|1812327_1813206_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
WP_000973714.1\|1813206_1813758_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
WP_000018224.1\|1813763_1814738_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1\|1814753_1815527_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565902.1\|1815531_1816611_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
WP_072600582.1\|1816637_1817951_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_4

1911093 : 1958567

Salmonella_phage(77.97%)

lysis,integrase,protease,tail,holin,capsid,terminase,portal,plate,head

attL 1912339:1912354|attR 1923870:1923885

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001219023.1\|1911093_1911618_-	peptidase	G9L6C4	Escherichia_phage	1.3e-36	77.7
1912339:1912354	attL	NA	NA	NA	NA
WP_000598921.1\|1912927_1913725_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_000532847.1\|1914016_1915006_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
WP_001527041.1\|1915007_1915235_-	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	3.2e-37	100.0
WP_001061334.1\|1915274_1915844_-	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
WP_000208069.1\|1915847_1916681_-	hypothetical protein	Q8HAA7	Salmonella_phage	4.0e-162	99.6
WP_000224241.1\|1916691_1916949_-	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.3e-42	100.0
WP_000215886.1\|1916950_1917484_-	hypothetical protein	A0A192Y7N1	Salmonella_phage	2.5e-101	100.0
WP_000008353.1\|1917554_1918094_-	hypothetical protein	A0A192Y8M4	Salmonella_phage	1.3e-97	99.4
WP_000080416.1\|1918230_1919058_-	DUF2303 family protein	A0A192Y6E5	Salmonella_phage	2.6e-153	100.0
WP_000997191.1\|1919115_1919487_-	hypothetical protein	A0A192Y6G0	Salmonella_phage	2.5e-63	100.0
WP_023891434.1\|1920026_1920251_+	hypothetical protein	A0A1C9IHY8	Salmonella_phage	1.6e-33	100.0
WP_001067432.1\|1920213_1920552_-	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	7.0e-57	100.0
WP_001020636.1\|1920757_1921453_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
WP_001191666.1\|1921550_1921775_+	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_000509731.1\|1921803_1922358_+	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
WP_001087404.1\|1922354_1923497_+	Rha family phage regulatory protein	A0A1C9IHV9	Salmonella_phage	1.5e-212	100.0
WP_000620702.1\|1923493_1923718_+	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_072600588.1\|1923714_1924689_+	conserved phage C-terminal domain-containing protein	A0A1C9IHW0	Salmonella_phage	2.6e-168	99.4
1923870:1923885	attR	NA	NA	NA	NA
WP_000054228.1\|1924685_1925159_+	PerC family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	4.9e-56	100.0
WP_000200164.1\|1925155_1926037_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	1.3e-171	100.0
WP_000779148.1\|1926045_1926435_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.9e-70	100.0
WP_001061460.1\|1926451_1927312_+	KilA-N domain-containing protein	Q8HA92	Salmonella_phage	2.1e-161	99.0
WP_001202280.1\|1927319_1928309_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	5.4e-190	97.3
WP_000609695.1\|1928323_1928596_+	hypothetical protein	A0A1B5FPA6	Escherichia_phage	2.1e-27	76.3
WP_001668823.1\|1928592_1929429_+	antitermination protein	A0A1B5FPA5	Escherichia_phage	6.5e-128	80.8
WP_001668825.1\|1931063_1931408_+\|holin	phage holin, lambda family	Q8HA87	Salmonella_phage	3.4e-43	98.8
WP_001005904.1\|1931410_1932025_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	8.2e-112	97.1
WP_077906432.1\|1932057_1932501_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	5.4e-57	83.9
WP_000268746.1\|1932985_1933309_-	hypothetical protein	NA	NA	NA	NA
WP_023891432.1\|1933404_1933749_+	HNH endonuclease	K7P6U5	Enterobacteria_phage	7.4e-46	73.0
WP_000919034.1\|1933881_1934346_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.3e-48	62.1
WP_000229716.1\|1934299_1936042_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	5.3e-140	44.5
WP_000002707.1\|1936041_1937346_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	6.2e-218	85.9
WP_000039021.1\|1937359_1938208_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	4.4e-132	88.2
WP_000005722.1\|1938217_1939435_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	1.4e-195	87.4
WP_072600590.1\|1939478_1939730_+	hypothetical protein	K7PHI6	Enterobacteria_phage	2.8e-10	66.0
WP_000901160.1\|1939729_1940053_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	8.3e-31	56.5
WP_001255650.1\|1940064_1940478_+\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	3.5e-50	74.8
WP_001179802.1\|1940449_1940962_+	hypothetical protein	Q8HAC8	Salmonella_phage	3.1e-80	86.5
WP_001241332.1\|1940958_1941504_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	3.6e-87	84.7
WP_000497755.1\|1941525_1941690_+	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	8.4e-24	96.3
WP_001007988.1\|1941679_1943176_+\|tail	phage tail sheath subtilisin-like domain-containing protein	Q8HAC5	Salmonella_phage	1.2e-276	99.2
WP_000515953.1\|1943175_1943532_+\|tail	phage tail tube protein	A0A192Y8K0	Salmonella_phage	1.3e-61	99.2
WP_000588852.1\|1943528_1943855_+\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_000785381.1\|1943939_1945865_+\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	97.3
WP_001033736.1\|1945881_1946331_+	hypothetical protein	NA	NA	NA	NA
WP_000863828.1\|1946390_1947731_+	DNA circularization N-terminal domain-containing protein	A0A192Y5U9	Salmonella_phage	4.4e-251	99.6
WP_001066632.1\|1947727_1948786_+\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	3.0e-202	99.7
WP_001273649.1\|1948785_1949319_+\|plate	phage baseplate assembly protein	Q8HAB9	Salmonella_phage	1.4e-96	100.0
WP_000605055.1\|1949323_1949737_+	phage GP46 family protein	A0A192Y6D0	Salmonella_phage	1.2e-74	99.3
WP_000785581.1\|1949729_1950809_+\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	7.2e-204	99.2
WP_001207832.1\|1950811_1951399_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_000554735.1\|1951385_1952948_+	hypothetical protein	A0A192Y7M1	Salmonella_phage	1.7e-283	98.5
WP_022742744.1\|1952917_1953523_+\|tail	tail fiber assembly protein	A0A192Y8L2	Salmonella_phage	2.7e-107	100.0
WP_000836773.1\|1953636_1953870_-	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.2e-36	100.0
WP_122815478.1\|1953944_1954058_-	hypothetical protein	A0A1C9IHU6	Salmonella_phage	4.3e-11	100.0
WP_000842532.1\|1954105_1954519_-	hypothetical protein	A0A192Y6F0	Salmonella_phage	2.9e-73	100.0
WP_001093793.1\|1954515_1954728_-	hypothetical protein	A0A192Y5V6	Salmonella_phage	2.7e-30	100.0
WP_001532308.1\|1955921_1956083_+	hypothetical protein	NA	NA	NA	NA
WP_000394197.1\|1956209_1956629_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457666.1\|1956631_1957900_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.3e-225	91.7
WP_000187976.1\|1958354_1958567_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	5.1e-21	70.0

DBSCAN-SWA_5

2870026 : 2946361

Salmonella_phage(78.95%)

lysis,protease,tail,capsid,holin,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938188.1\|2870026_2870707_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	1.6e-84	72.4
WP_000374046.1\|2871345_2872005_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904446.1\|2872091_2872421_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|2872417_2872699_-	acylphosphatase	NA	NA	NA	NA
WP_000548081.1\|2872747_2873527_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000859416.1\|2873552_2874101_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140480.1\|2874315_2875527_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|2875584_2875902_+	heat shock protein HspQ	NA	NA	NA	NA
WP_001537782.1\|2875946_2876360_-	CoA-binding protein	NA	NA	NA	NA
WP_000847736.1\|2876533_2877196_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|2877290_2877749_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420505.1\|2877784_2879839_-	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_001261222.1\|2879962_2880409_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950881.1\|2880427_2882581_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202375.1\|2882567_2883173_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|2883389_2883899_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_001670727.1\|2884255_2885308_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|2885379_2885832_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156459.1\|2886017_2887778_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|2887846_2888365_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|2888464_2888632_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|2888887_2889451_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433414.1\|2889447_2891088_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333152.1\|2891092_2892346_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053051.1\|2892360_2894268_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	5.4e-53	29.8
WP_001086485.1\|2894280_2896389_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224076.1\|2896487_2897597_+	YcbX family protein	NA	NA	NA	NA
WP_001220671.1\|2897593_2898136_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291725.1\|2898301_2899312_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193785.1\|2899519_2902132_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
WP_000497441.1\|2902558_2902750_+	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_001525490.1\|2903020_2903707_+	hypothetical protein	NA	NA	NA	NA
WP_000334547.1\|2904066_2904693_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_001669084.1\|2905340_2906309_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	8.7e-193	99.1
WP_065304850.1\|2906427_2906562_-\|tail	phage tail protein	NA	NA	NA	NA
WP_023261776.1\|2907429_2907948_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.9e-45	51.4
WP_023261522.1\|2907962_2909624_-	hypothetical protein	A0A192Y7M1	Salmonella_phage	7.3e-131	57.8
WP_000049935.1\|2909623_2910304_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	1.4e-128	98.2
WP_001197094.1\|2910300_2911500_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	2.2e-214	97.7
WP_001270643.1\|2911500_2911854_-	hypothetical protein	A0A0M4R339	Salmonella_phage	2.1e-59	97.4
WP_000301076.1\|2911853_2912606_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	1.2e-93	71.7
WP_024156220.1\|2912669_2913395_-	hypothetical protein	NA	NA	NA	NA
WP_000081751.1\|2913397_2914462_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	8.8e-162	85.9
WP_000155111.1\|2914464_2914767_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.2e-53	100.0
WP_000353826.1\|2914766_2915342_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.4e-97	100.0
WP_000990863.1\|2915341_2917351_-	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	0.0e+00	98.5
WP_001669124.1\|2917528_2917981_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	3.2e-65	81.3
WP_000535993.1\|2917984_2918428_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	6.0e-56	74.5
WP_023261524.1\|2918440_2919586_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	2.0e-164	75.3
WP_023261525.1\|2919589_2920153_-	hypothetical protein	A0A0M4R331	Salmonella_phage	4.7e-82	78.7
WP_001142474.1\|2920127_2920517_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	6.0e-68	97.7
WP_000008736.1\|2920503_2921058_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.8e-94	99.5
WP_001125673.1\|2921054_2921462_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.8e-73	100.0
WP_001040702.1\|2921427_2921796_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	8.7e-61	100.0
WP_000627464.1\|2921837_2922779_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	100.0
WP_000128058.1\|2922790_2923288_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	3.0e-88	100.0
WP_000873180.1\|2923292_2924525_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.0e-226	97.6
WP_077905805.1\|2924539_2925277_-\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	6.4e-111	99.0
WP_000113508.1\|2925164_2926631_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.2e-281	99.6
WP_001130809.1\|2926630_2928253_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	99.3
WP_001118125.1\|2928255_2928885_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	9.3e-111	99.5
WP_000381863.1\|2928954_2929218_-	hypothetical protein	NA	NA	NA	NA
WP_001050821.1\|2929417_2929903_-\|lysis	lysis protein	Q8HA85	Salmonella_phage	4.2e-71	88.2
WP_001005894.1\|2929899_2930526_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	7.1e-95	80.7
WP_162264800.1\|2930528_2930870_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	9.6e-46	80.4
WP_000993184.1\|2931070_2931760_-	antitermination protein	I6PDF8	Cronobacter_phage	2.4e-59	51.9
WP_000801757.1\|2931756_2931897_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001096547.1\|2931893_2932505_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	4.2e-92	99.5
WP_000929790.1\|2932713_2933316_-	DUF1367 family protein	S4TTI0	Salmonella_phage	7.5e-110	99.5
WP_001217670.1\|2933649_2933889_-	DinI family protein	H6WRY5	Salmonella_phage	3.9e-38	100.0
WP_000208070.1\|2934408_2935218_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	4.5e-158	100.0
WP_000151011.1\|2935214_2935667_-	ead/Ea22-like family protein	S4TNP2	Salmonella_phage	3.8e-74	100.0
WP_000065341.1\|2935663_2936065_-	ParB/RepB/Spo0J family partition protein	S4TTI6	Salmonella_phage	2.9e-73	100.0
WP_000113621.1\|2936061_2936409_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.5e-57	98.3
WP_000800012.1\|2936419_2937169_-	ATP-binding protein	S4TNF5	Salmonella_phage	4.3e-139	100.0
WP_001669125.1\|2937171_2938155_-	replication protein	H6WRX7	Salmonella_phage	7.3e-163	99.7
WP_001538023.1\|2938239_2938614_-	hypothetical protein	S4TTD7	Salmonella_phage	3.0e-64	100.0
WP_000869364.1\|2938579_2938816_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.8e-38	100.0
WP_001009038.1\|2938945_2939350_+	transcriptional regulator	H6WRX4	Salmonella_phage	4.2e-72	100.0
WP_000917564.1\|2939748_2939907_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_001669126.1\|2939928_2940279_+	hypothetical protein	S4TSN6	Salmonella_phage	7.5e-62	100.0
WP_000017138.1\|2940405_2943333_+	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	100.0
WP_001539618.1\|2943295_2944453_+	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001237031.1\|2944495_2944735_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000065276.1\|2944775_2945024_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262307.1\|2945068_2946361_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	3.4e-253	100.0

DBSCAN-SWA_6

3017576 : 3024889

Ralstonia_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001531374.1\|3017576_3017954_+	hypothetical protein	A0A077KET4	Ralstonia_phage	1.7e-19	40.2
WP_001117984.1\|3018115_3018313_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|3018525_3020802_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|3020832_3021153_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|3021476_3021698_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125877.1\|3021827_3023774_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_001201753.1\|3023770_3024889_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	8.1e-09	39.8

DBSCAN-SWA_7

4383248 : 4428023

Burkholderia_phage(36.36%)

tail,tRNA,plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001182219.1\|4383248_4384247_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_001039337.1\|4384334_4385645_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000416272.1\|4385891_4386407_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001030592.1\|4386506_4386716_-	CsbD family protein	NA	NA	NA	NA
WP_001575282.1\|4386737_4386851_-	hypothetical protein	NA	NA	NA	NA
WP_001128118.1\|4386847_4388173_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646079.1\|4388351_4388960_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002900.1\|4389068_4389437_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017360.1\|4389607_4392028_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455249.1\|4392126_4392999_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000019231.1\|4393012_4393510_-	chorismate lyase	NA	NA	NA	NA
WP_000782497.1\|4393690_4394608_-	maltose operon protein MalM	NA	NA	NA	NA
WP_000973642.1\|4394771_4396130_-	maltoporin	NA	NA	NA	NA
WP_072600747.1\|4396218_4397328_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000695415.1\|4397688_4398879_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000382573.1\|4399010_4400555_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_001252085.1\|4400569_4401460_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000982749.1\|4401625_4402036_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_000750804.1\|4402178_4404275_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_000977968.1\|4404274_4405012_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_123220402.1\|4405008_4405677_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_001541297.1\|4405710_4405953_-	outer membrane protein	NA	NA	NA	NA
WP_000790042.1\|4406396_4408046_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000136394.1\|4408390_4409740_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000615248.1\|4409870_4410218_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226439.1\|4410794_4411082_+\|holin	putative holin	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
WP_001203711.1\|4411084_4411690_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	9.3e-60	59.4
WP_000777266.1\|4411702_4412017_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_000449399.1\|4412176_4412632_+	Gp37 family protein	NA	NA	NA	NA
WP_000875314.1\|4412628_4412826_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000729853.1\|4412815_4414243_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.4e-194	70.9
WP_000907494.1\|4414242_4414767_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003635.1\|4414818_4415136_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185654.1\|4415095_4415224_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001262492.1\|4415320_4417672_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	3.4e-65	30.3
WP_000271425.1\|4417671_4418625_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001269716.1\|4418624_4418834_+\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000818150.1\|4418821_4419865_+	phage late control D family protein	A4JWL3	Burkholderia_virus	3.8e-77	45.9
WP_000679389.1\|4419874_4420597_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_000593182.1\|4420924_4421287_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000703628.1\|4421283_4422213_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	7.9e-151	84.1
WP_001095009.1\|4422212_4423760_+	hypothetical protein	B9UDL6	Salmonella_phage	1.5e-48	29.9
WP_001093501.1\|4423923_4424283_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_072600750.1\|4424273_4425389_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	6.9e-101	52.0
WP_000359500.1\|4425381_4426014_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
WP_000368203.1\|4426016_4427498_+\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	1.3e-51	51.7
WP_001177097.1\|4427507_4428023_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	3.4e-34	41.2

DBSCAN-SWA_8

4546676 : 4611182

Salmonella_phage(46.51%)

lysis,integrase,protease,tail,holin,capsid,terminase,portal,plate,head

attL 4576539:4576585|attR 4606557:4606603

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000208240.1\|4546676_4547207_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_001293360.1\|4547216_4548548_+	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	2.4e-44	28.3
WP_000139637.1\|4548614_4549544_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000872918.1\|4549636_4550122_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_000051370.1\|4550343_4550583_-	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000084285.1\|4550981_4551827_+	aquaporin	M1HWZ0	Paramecium_bursaria_Chlorella_virus	2.0e-15	28.6
WP_000136809.1\|4551847_4553356_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001250617.1\|4553467_4554478_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000796303.1\|4554574_4555321_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_000155237.1\|4555427_4555856_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000802241.1\|4555956_4556553_+	YiiQ family protein	NA	NA	NA	NA
WP_001216335.1\|4556665_4557433_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_001088049.1\|4557524_4558289_-	epimerase	NA	NA	NA	NA
WP_001667977.1\|4558298_4558589_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_000774146.1\|4558671_4559547_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_000090742.1\|4559575_4560598_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000981831.1\|4560626_4561628_-	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000911134.1\|4561624_4562668_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_001167248.1\|4562661_4564197_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	6.3e-20	30.0
WP_001283049.1\|4564452_4565412_+	transcriptional regulator LsrR	NA	NA	NA	NA
WP_000113083.1\|4565498_4567091_+	autoinducer-2 kinase	NA	NA	NA	NA
WP_001173083.1\|4567104_4567455_+	cupin domain-containing protein	NA	NA	NA	NA
WP_000060999.1\|4567691_4567862_-	hypothetical protein	NA	NA	NA	NA
WP_001533426.1\|4567959_4568682_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000557882.1\|4568744_4569785_-	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_000646502.1\|4569794_4570754_-	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_000777314.1\|4570764_4572099_-	MFS transporter	NA	NA	NA	NA
WP_000750756.1\|4572361_4573117_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_000758710.1\|4573217_4574207_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000591793.1\|4574410_4575373_-	6-phosphofructokinase	NA	NA	NA	NA
WP_001077320.1\|4575557_4576460_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
4576539:4576585	attL	NA	NA	NA	NA
WP_000468356.1\|4576746_4577154_+	hypothetical protein	S4TTB4	Salmonella_phage	1.6e-71	100.0
WP_000468311.1\|4577204_4577423_-	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	4.7e-38	100.0
WP_001526245.1\|4577500_4578670_-	phage late control D family protein	S4TRX8	Salmonella_phage	2.3e-208	96.9
WP_070811924.1\|4578666_4579152_-\|tail	phage tail protein	S4TUC3	Salmonella_phage	2.6e-84	98.8
WP_072600759.1\|4579164_4581606_-\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	98.5
WP_085984508.1\|4581598_4581754_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
WP_001029727.1\|4581750_4582086_-\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
WP_001207675.1\|4582147_4582666_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
WP_001279030.1\|4582681_4583869_-\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	2.0e-223	100.0
WP_072600761.1\|4584003_4584573_-\|tail	tail fiber assembly protein	A0A0M4QWM3	Salmonella_phage	4.4e-104	98.4
WP_072600763.1\|4584572_4586315_-\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.4e-270	98.6
WP_072600765.1\|4586325_4586856_-\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	1.6e-103	99.4
WP_024157126.1\|4586848_4587757_-\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	2.0e-159	98.7
WP_072600768.1\|4587763_4588111_-	GPW/gp25 family protein	O80315	Escherichia_phage	1.5e-54	95.7
WP_072600770.1\|4588107_4588749_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	3.2e-111	96.2
WP_072600773.1\|4588817_4589267_-	phage virion morphogenesis protein	O80313	Escherichia_phage	1.9e-70	96.0
WP_072600775.1\|4589259_4589727_-\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	4.6e-83	98.7
WP_072105331.1\|4589689_4589863_-\|lysis	phage lysis protein	O80311	Escherichia_phage	1.8e-24	96.5
WP_072600777.1\|4589834_4590248_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	3.7e-44	70.8
WP_072600779.1\|4590244_4590742_-	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	8.4e-91	97.6
WP_000134660.1\|4590728_4591025_-\|holin	phage holin family protein	Q6K1I2	Salmonella_virus	5.8e-47	100.0
WP_000868400.1\|4591028_4591232_-\|tail	tail protein X	A0A0M3ULF4	Salmonella_phage	3.6e-32	100.0
WP_023172566.1\|4591231_4591738_-\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	9.5e-90	98.2
WP_052894587.1\|4591831_4592581_-\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	2.2e-111	86.7
WP_052894588.1\|4592584_4593652_-\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	3.0e-178	89.5
WP_001085936.1\|4593727_4594582_-\|capsid	capsid scaffolding protein	S4TP53	Salmonella_phage	8.9e-157	98.6
WP_072600781.1\|4594747_4596517_+\|terminase	terminase ATPase subunit family protein	S4TT96	Salmonella_phage	0.0e+00	99.7
WP_000517958.1\|4596516_4597563_+\|portal	phage portal protein	S4TNX7	Salmonella_phage	4.4e-190	99.4
WP_001526224.1\|4597942_4600426_+	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_001526225.1\|4600664_4602944_-	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	96.7
WP_000027667.1\|4602933_4603209_-	DUF5405 family protein	Q858T5	Yersinia_virus	3.8e-45	100.0
WP_001113264.1\|4603205_4603430_-	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_001526254.1\|4603429_4603732_-	DUF5405 family protein	A0A0F7LCL4	Escherichia_phage	5.9e-47	99.0
WP_000557703.1\|4603731_4603956_-	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_000217670.1\|4604019_4604520_-	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_000453532.1\|4604689_4604962_-	hypothetical protein	Q1JS20	Enterobacteria_phage	5.3e-47	100.0
WP_001017512.1\|4605097_4605391_+	helix-turn-helix transcriptional regulator	Q1JS21	Enterobacteria_phage	4.0e-48	100.0
WP_001526255.1\|4605460_4606441_+\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	2.4e-182	97.9
WP_001233463.1\|4606625_4607126_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
4606557:4606603	attR	NA	NA	NA	NA
WP_001033731.1\|4607276_4607975_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_000580402.1\|4607971_4609345_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
WP_000133449.1\|4609395_4609791_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_000559216.1\|4609802_4610492_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_000122632.1\|4610561_4611182_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016010

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection