CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP016013	Salmonella enterica subsp. enterica serovar Newport strain CFSAN003890 plasmid pCFSAN003890, complete sequence	0 crisprs	DEDDh	0	0	0	0
NZ_CP016012	Salmonella enterica subsp. enterica serovar Newport strain CFSAN003890 chromosome, complete genome	3 crisprs	WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas3,cas14j,DEDDh,DinG,c2c9_V-U4	0	30	11	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP016012_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016012_1

941275-942461

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGN	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

19 spacers

cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NZ_CP016012_1

>merge|NZ_CP016012|1|941275-942461|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGCGGCAAAAGAACTCGCTAAATGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTGCGGCAGCGCGCAATCGAGACACGCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGCACAAAACGCCAGTGGCATGGTACAACCCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTGACCATGTTTAACTCTAAATCAGGCCGTGTGTTCCCAGCGCCAGCGGGGATAAACCGTCATGCTTTCGACTAAATACTACCGCGACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATAACAACATTATCAGTGTGAAAAGTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATATGAAAAACGTAAAAATTTACACCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATAGGACAGCCATTCGAGCGCCCAGAGTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCAGTATGCACTGCTTGATAAAGTCAGGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTAACGTCTATAGCTAAATGTAGAGAAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTTTGGAGTCAATGTTATTTCTTCAGGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTCGCTGGTTGCTCCAACTCCTGATATGCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAAAATCTTCTTTCATATAACCGTAAGGGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGTTTTGTCACCTCAACGGTCGGGAGTGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCAACAGTTTCTTACCGCAAGCAGTTTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCATCGGGATTCATTTTGTTGTCCGGGTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTGCTCTATGTCTAAAAATAAAAGCGGTTCGTGTTCCCTGCGCCAGCGGGGATAAACCCAGCACAATCATTATTAGATGAACTTTCATCAAGTGTTCCCCGCGCAGCGGGGATAAACCGGGGATCGCGCTGGCGGTCGCATCCGTTGCCGTGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP016012|1|1|941275-942461|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCA
AGTGTTCCCCGCGCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP016012|1|1|941275-942461|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCAA
GTGTTCCCCGCGCAGCGGGGATAAACCGG	GGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP016012|1|1|941397-942400|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCAA
GTGTTCCCCGCGCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016012.1\|WP_000108313.1\|943443_943806_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP016012.1\|WP_000981807.1\|932149_934849_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
NZ_CP016012.1\|WP_000935104.1\|954709_955312_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP016012.1\|WP_000666422.1\|956402_957128_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP016012.1\|WP_001290654.1\|946028_947741_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP016012.1\|WP_000842512.1\|934928_935516_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP016012.1\|WP_001079642.1\|929819_930356_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP016012.1\|WP_001199961.1\|940306_940978_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP016012.1\|WP_000832396.1\|930352_930823_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP016012.1\|WP_000036734.1\|938872_940171_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP016012.1\|WP_000210451.1\|936124_936925_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP016012.1\|WP_000210923.1\|944229_946029_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP016012.1\|WP_000080403.1\|947816_948551_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP016012.1\|WP_001044459.1\|931363_932137_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP016012.1\|WP_000178270.1\|930837_931344_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP016012.1\|WP_000366318.1\|953157_954693_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP016012.1\|WP_001208002.1\|942558_943356_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP016012.1\|WP_001670238.1\|955334_956393_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP016012.1\|WP_000210858.1\|937152_938790_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP016012.1\|WP_001670772.1\|948763_949717_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277

Protein	Function_ID	Function_description	E-value
NZ_CP016012.1\|WP_000108313.1\|943443_943806_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP016012.1\|WP_000981807.1\|932149_934849_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
NZ_CP016012.1\|WP_000935104.1\|954709_955312_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37
NZ_CP016012.1\|WP_000666422.1\|956402_957128_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.58885e-47
NZ_CP016012.1\|WP_001290654.1\|946028_947741_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP016012.1\|WP_000842512.1\|934928_935516_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP016012.1\|WP_001079642.1\|929819_930356_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.00241e-120
NZ_CP016012.1\|WP_001199961.1\|940306_940978_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP016012.1\|WP_000832396.1\|930352_930823_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
NZ_CP016012.1\|WP_000036734.1\|938872_940171_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP016012.1\|WP_000210451.1\|936124_936925_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP016012.1\|WP_000210923.1\|944229_946029_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP016012.1\|WP_000080403.1\|947816_948551_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
NZ_CP016012.1\|WP_001044459.1\|931363_932137_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP016012.1\|WP_000178270.1\|930837_931344_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
NZ_CP016012.1\|WP_000366318.1\|953157_954693_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP016012.1\|WP_001208002.1\|942558_943356_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
NZ_CP016012.1\|WP_001670238.1\|955334_956393_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NZ_CP016012.1\|WP_000210858.1\|937152_938790_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP016012.1\|WP_001670772.1\|948763_949717_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0

>NZ_CP016012.1|WP_001199961.1|940306_940978_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP016012.1|WP_000036734.1|938872_940171_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP016012.1|WP_000210858.1|937152_938790_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRNEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDAQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP016012.1|WP_000210451.1|936124_936925_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP016012.1|WP_000842512.1|934928_935516_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP016012.1|WP_000981807.1|932149_934849_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESSYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP016012.1|WP_001044459.1|931363_932137_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP016012.1|WP_000178270.1|930837_931344_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP016012.1|WP_000832396.1|930352_930823_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP016012.1|WP_001079642.1|929819_930356_-|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFKLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>NZ_CP016012.1|WP_001208002.1|942558_943356_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP016012.1|WP_000108313.1|943443_943806_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP016012.1|WP_000210923.1|944229_946029_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP016012.1|WP_001290654.1|946028_947741_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP016012.1|WP_000080403.1|947816_948551_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP016012.1|WP_001670772.1|948763_949717_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP016012.1|WP_000366318.1|953157_954693_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_CP016012.1|WP_000935104.1|954709_955312_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK
>NZ_CP016012.1|WP_001670238.1|955334_956393_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP016012.1|WP_000666422.1|956402_957128_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNQHYHLAVHALASQDRWLRDYHTVGAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT

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Crispr_ID: NZ_CP016012_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016012_2

959130-960744

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAAC	PILER-CR

26 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of NZ_CP016012_2

>merge|NZ_CP016012|2|959130-960744|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGAACGGCAGTATTTAAAAGGGGTTATTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGGCGCCCGGATTGTTTGCGTGCGGCGACGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATTTACCCGCCACTTATTCCCCATTGCATGTGTTCCCCGCGCCAGCGGGGATAAATCGGGACTATCAAACCATCTATGATGCCAATTTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGGGGCTGGTATTCGATACAGACCCGGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAATAAAAATGAATTTGAGTCAACTCTATAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTAGGCTGCGGTTGGGCACCGAAGAAAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATTATCCCGGAAATCGTGATCAACTACGCAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATTGTTATTGCGGTAACGGATAATTTATCATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGGCGATCGCATTTGGGTGCGGGAAACATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAATATGGTGATAATGTTGCACCTTCGCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTCGGCCTGTTTTTTGATTTTGACAATCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAATAACCGACGAGGGCAAACGCCGTGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGACTGAGGGAATAGGGACCGTAATTGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACAATGTTGCGTCTAATTCTCATTAATTAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACGAAAATCAGCCCGCATATTCCGACACAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGTGGTTTTAGGTTGTCGGTGCTGATCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGATTAAACAACAGGATTTTGCAATTACTGTTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACGGCAGCAGCGTGAAACACGTCAGTATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAGCTGTTCCATACTCACCCCCTGTGCAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATGTATGCCGCGACGATCGAGAGCGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCAGATGAAAAATATTTACAGATTGGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAACTATCTCTATCGCAGGCTGGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAAAGGTACTCCCATATCTCCAGCCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP016012|2|2|959130-959890|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGC	GGGGCTGGTATTCGATACAGACCCGGCTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGGGA	ATAAAAATGAATTTGAGTCAACTCTATAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGT	TAGGCTGCGGTTGGGCACCGAAGAAAAAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	ATCCCGGAAATCGTGATCAACTACGCAGGGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	GTTATTGCGGTAACGGATAATTTATCATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCT	GGCGATCGCATTTGGGTGCGGGAAACATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCG	AATATGGTGATAATGTTGCACCTTCGCTCGTG
TTCCCCGCGCCAGCGGGGATAAACCGGAC	TCGGCCTGTTTTTTGATTTTGACAATCAGGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCAATAACCGACGAGGGCAAACGCCGTGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGACTGAGGGAATAGGGACCGTAATTGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAACTATCTCTATCGCAGGCTGGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAAAGGTACTCCCATATCTCCAGCCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
	CGAAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATC


>NZ_CP016012|2|2|959130-960744|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTTATTGCGGTAACGGATAATTTATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGGCGATCGCATTTGGGTGCGGGAAACATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGACTGAGGGAATAGGGACCGTAATTGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP016012|2|2|959130-960744|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTTATTGCGGTAACGGATAATTTATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGGCGATCGCATTTGGGTGCGGGAAACATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGACTGAGGGAATAGGGACCGTAATTGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP016012|2|3|959984-960744|PILER-CR
	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGC	GGGGCTGGTATTCGATACAGACCCGGCTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGGGA	ATAAAAATGAATTTGAGTCAACTCTATAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGT	TAGGCTGCGGTTGGGCACCGAAGAAAAAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	ATCCCGGAAATCGTGATCAACTACGCAGGGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	GTTATTGCGGTAACGGATAATTTATCATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCT	GGCGATCGCATTTGGGTGCGGGAAACATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCG	AATATGGTGATAATGTTGCACCTTCGCTCGTG
TTCCCCGCGCCAGCGGGGATAAACCGGAC	TCGGCCTGTTTTTTGATTTTGACAATCAGGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCAATAACCGACGAGGGCAAACGCCGTGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGACTGAGGGAATAGGGACCGTAATTGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAACTATCTCTATCGCAGGCTGGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAAAGGTACTCCCATATCTCCAGCCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
	CGAAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>NZ_CP016012|2|4|960472-960742|PILER-CR
	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGC	GGGGCTGGTATTCGATACAGACCCGGCTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGGGA	ATAAAAATGAATTTGAGTCAACTCTATAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGT	TAGGCTGCGGTTGGGCACCGAAGAAAAAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	ATCCCGGAAATCGTGATCAACTACGCAGGGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	GTTATTGCGGTAACGGATAATTTATCATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCT	GGCGATCGCATTTGGGTGCGGGAAACATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCG	AATATGGTGATAATGTTGCACCTTCGCTCGTG
TTCCCCGCGCCAGCGGGGATAAACCGGAC	TCGGCCTGTTTTTTGATTTTGACAATCAGGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCAATAACCGACGAGGGCAAACGCCGTGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGACTGAGGGAATAGGGACCGTAATTGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAACTATCTCTATCGCAGGCTGGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAAAGGTACTCCCATATCTCCAGCCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
	CGAAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGCCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016012.1\|WP_000490481.1\|960758_961805_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP016012.1\|WP_001221538.1\|968115_968877_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP016012.1\|WP_000281416.1\|957127_957832_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
NZ_CP016012.1\|WP_000517480.1\|965569_965881_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP016012.1\|WP_001537530.1\|965055_965379_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP016012.1\|WP_001290654.1\|946028_947741_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP016012.1\|WP_000062285.1\|958751_959045_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP016012.1\|WP_000372384.1\|962055_962964_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP016012.1\|WP_000080403.1\|947816_948551_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP016012.1\|WP_000118676.1\|957831_958749_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP016012.1\|WP_001670772.1\|948763_949717_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP016012.1\|WP_001092268.1\|962973_964413_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP016012.1\|WP_001219244.1\|966609_967089_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP016012.1\|WP_000666422.1\|956402_957128_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP016012.1\|WP_001670238.1\|955334_956393_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP016012.1\|WP_000741641.1\|965899_966610_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP016012.1\|WP_000366318.1\|953157_954693_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP016012.1\|WP_000935104.1\|954709_955312_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP016012.1\|WP_001173663.1\|964399_965005_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP016012.1\|WP_000134243.1\|967085_968135_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884

Protein	Function_ID	Function_description	E-value
NZ_CP016012.1\|WP_000490481.1\|960758_961805_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP016012.1\|WP_001221538.1\|968115_968877_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP016012.1\|WP_000281416.1\|957127_957832_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	7.8492e-90
NZ_CP016012.1\|WP_000517480.1\|965569_965881_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP016012.1\|WP_001537530.1\|965055_965379_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.31009e-48
NZ_CP016012.1\|WP_001290654.1\|946028_947741_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP016012.1\|WP_000062285.1\|958751_959045_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.50902e-63
NZ_CP016012.1\|WP_000372384.1\|962055_962964_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP016012.1\|WP_000080403.1\|947816_948551_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
NZ_CP016012.1\|WP_000118676.1\|957831_958749_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.73134e-156
NZ_CP016012.1\|WP_001670772.1\|948763_949717_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP016012.1\|WP_001092268.1\|962973_964413_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP016012.1\|WP_001219244.1\|966609_967089_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP016012.1\|WP_000666422.1\|956402_957128_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.58885e-47
NZ_CP016012.1\|WP_001670238.1\|955334_956393_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	3.88788e-121
NZ_CP016012.1\|WP_000741641.1\|965899_966610_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.96864e-119
NZ_CP016012.1\|WP_000366318.1\|953157_954693_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP016012.1\|WP_000935104.1\|954709_955312_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37
NZ_CP016012.1\|WP_001173663.1\|964399_965005_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP016012.1\|WP_000134243.1\|967085_968135_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0

>NZ_CP016012.1|WP_000062285.1|958751_959045_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLVVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>NZ_CP016012.1|WP_000118676.1|957831_958749_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVWATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVALGDSGHRST
>NZ_CP016012.1|WP_000281416.1|957127_957832_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHTLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>NZ_CP016012.1|WP_000666422.1|956402_957128_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNQHYHLAVHALASQDRWLRDYHTVGAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>NZ_CP016012.1|WP_001670238.1|955334_956393_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>NZ_CP016012.1|WP_000935104.1|954709_955312_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK
>NZ_CP016012.1|WP_000366318.1|953157_954693_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>NZ_CP016012.1|WP_001670772.1|948763_949717_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>NZ_CP016012.1|WP_000080403.1|947816_948551_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP016012.1|WP_001290654.1|946028_947741_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP016012.1|WP_000490481.1|960758_961805_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP016012.1|WP_000372384.1|962055_962964_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP016012.1|WP_001092268.1|962973_964413_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP016012.1|WP_001173663.1|964399_965005_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP016012.1|WP_001537530.1|965055_965379_+|DUF3561-family-protein
MRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP016012.1|WP_000517480.1|965569_965881_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP016012.1|WP_000741641.1|965899_966610_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLADHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP016012.1|WP_001219244.1|966609_967089_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP016012.1|WP_000134243.1|967085_968135_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALHWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP016012.1|WP_001221538.1|968115_968877_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: NZ_CP016012_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP016012_3

2948258-2948367

Orphan

Consensus_repeat	Method
TTTTCGGGGATAACTATCCCCGTTTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP016012_3

>merge|NZ_CP016012|3|2948258-2948367|CRISPRCasFinder
TTTTCGGGGATGCCCTTCCCTCTTTTCGGGGATAACTATCCCCGTTTTCAGGGATGGCTGAATGGGGTAAAACGCTATCCCTGTTTTCAGGGATAACTATCCCCGTTTTC

>NZ_CP016012|3|3|2948258-2948367|CRISPRCasFinder
TTTTCGGGGATGCCCTTCCCTCTTTTC	GGGGATAACTATCCCCGTTTTCAGGGATGGCTGAATGGGGTAAAACGCTATCCCTG
TTTTCAGGGATAACTATCCCCGTTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP016012.1\|WP_014343823.1\|2946085_2946376_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016012.1\|WP_001668146.1\|2950509_2950809_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016012.1\|WP_001047631.1\|2942792_2943590_-\|antitermination-protein	unknown	unknown	gnl\|CDD\|367572
NZ_CP016012.1\|WP_000370145.1\|2949257_2949497_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP016012.1\|WP_014344008.1\|2950076_2950337_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016012.1\|WP_000929805.1\|2944542_2945145_-\|DUF1367-family-protein	unknown	unknown	gnl\|CDD\|369209
NZ_CP016012.1\|WP_001217665.1\|2945560_2945794_-\|DinI-family-protein	unknown	unknown	gnl\|CDD\|368780
NZ_CP016012.1\|WP_000017133.1\|2950935_2953821_+\|PD-(D/E)XK-nuclease-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|236615
NZ_CP016012.1\|WP_000065108.1\|2946453_2946765_-\|ead/Ea22-like-family-protein	unknown	unknown	gnl\|CDD\|379401
NZ_CP016012.1\|WP_001539618.1\|2953783_2954941_+\|recombinase-RecT	unknown	unknown	gnl\|CDD\|367688
NZ_CP016012.1\|WP_000917564.1\|2950329_2950488_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP016012.1\|WP_001038966.1\|2949616_2950027_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|182039
NZ_CP016012.1\|WP_001237031.1\|2954983_2955223_+\|DUF4060-family-protein	unknown	unknown	gnl\|CDD\|372542
NZ_CP016012.1\|WP_000065276.1\|2955263_2955512_+\|excisionase-family-protein	unknown	unknown	gnl\|CDD\|369087
NZ_CP016012.1\|WP_001617856.1\|2943579_2943726_-\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP016012.1\|WP_001096552.1\|2943722_2944334_-\|recombination-protein-NinG	unknown	unknown	gnl\|CDD\|368603
NZ_CP016012.1\|WP_000800010.1\|2947119_2947869_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|183482
NZ_CP016012.1\|WP_001574095.1\|2948917_2949292_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP016012.1\|WP_000113629.1\|2946761_2947109_-\|DUF977-family-protein	unknown	unknown	gnl\|CDD\|310626
NZ_CP016012.1\|WP_000807548.1\|2945227_2945449_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP016012.1\|WP_001047631.1\|2942792_2943590_-\|antitermination-protein	gnl\|CDD\|367572	pfam03589, Antiterm, Antitermination protein.	1.28728e-31
NZ_CP016012.1\|WP_000370145.1\|2949257_2949497_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	0.00013906
NZ_CP016012.1\|WP_000929805.1\|2944542_2945145_-\|DUF1367-family-protein	gnl\|CDD\|369209	pfam07105, DUF1367, Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical phage proteins of around 200 residues in length. The function of this family is unknown. Some proteins are annotated as IrsA (intracellular response to stress).	1.12791e-114
NZ_CP016012.1\|WP_001217665.1\|2945560_2945794_-\|DinI-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	9.70149e-27
NZ_CP016012.1\|WP_001539618.1\|2953783_2954941_+\|recombinase-RecT	gnl\|CDD\|367688	pfam03837, RecT, RecT family. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to RecT.	9.67616e-35
NZ_CP016012.1\|WP_000017133.1\|2950935_2953821_+\|PD-(D/E)XK-nuclease-like-domain-containing-protein	gnl\|CDD\|236615	PRK09709, PRK09709, exodeoxyribonuclease VIII.	2.06321e-119
NZ_CP016012.1\|WP_001096552.1\|2943722_2944334_-\|recombination-protein-NinG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	5.02649e-83
NZ_CP016012.1\|WP_001237031.1\|2954983_2955223_+\|DUF4060-family-protein	gnl\|CDD\|372542	pfam13269, DUF4060, Protein of unknown function (DUF4060). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length. There are two conserved sequence motifs: VEVV and SYVAT.	1.50161e-33
NZ_CP016012.1\|WP_000065276.1\|2955263_2955512_+\|excisionase-family-protein	gnl\|CDD\|369087	pfam06806, DUF1233, Putative excisionase (DUF1233). This family consists of several putative phage excisionase proteins of around 80 residues in length.	3.82484e-37
NZ_CP016012.1\|WP_000065108.1\|2946453_2946765_-\|ead/Ea22-like-family-protein	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	7.866e-21
NZ_CP016012.1\|WP_001038966.1\|2949616_2950027_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|182039	PRK09706, PRK09706, transcriptional repressor DicA; Reviewed.	2.07141e-08
NZ_CP016012.1\|WP_000800010.1\|2947119_2947869_-\|ATP-binding-protein	gnl\|CDD\|183482	PRK12377, PRK12377, putative replication protein; Provisional.	5.94474e-166
NZ_CP016012.1\|WP_001574095.1\|2948917_2949292_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	0.000504381
NZ_CP016012.1\|WP_000113629.1\|2946761_2947109_-\|DUF977-family-protein	gnl\|CDD\|310626	pfam06163, DUF977, Bacterial protein of unknown function (DUF977). This family consists of several hypothetical bacterial proteins from Escherichia coli and Salmonella typhi. The function of this family is unknown.	4.04244e-58

>NZ_CP016012.1|WP_000800010.1|2947119_2947869_-|ATP-binding-protein
MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRSEELDRMNQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGFASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYDGGQSEASLLDDLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGARVIDRLQMDGGMWVNFDWESYRKNVSHLRIVK
>NZ_CP016012.1|WP_000113629.1|2946761_2947109_-|DUF977-family-protein
MARPKTQSERMIILERIIGLVKEQGRITTNDVVAIFGVHRTTAEKYLRIALERGGFIRHGRCGIFRDQRAVIDYDLRRYSSSQVTGFSALPVLEKSPVMQVYGASKMSINKGGAQ
>NZ_CP016012.1|WP_000065108.1|2946453_2946765_-|ead/Ea22-like-family-protein
MSNIDKRALREVAERATPGNWRRTSSLFNGITVTPFSLCGEEVTLAHTVEKRDAEFIAAANPATVLALLDVLYEFGEDEVAISEYVTNLEDALRVAAAPQQEE
>NZ_CP016012.1|WP_014343823.1|2946085_2946376_-|hypothetical-protein
MNYEDKLMYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKVPVMEFKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD
>NZ_CP016012.1|WP_001217665.1|2945560_2945794_-|DinI-family-protein
MRIELVISRAKQLPEGAVPALEKELITRLQNQYENCNLTIRRGSQDGLSIVGAADGDKKRIQSILQETWESADDWFY
>NZ_CP016012.1|WP_000807548.1|2945227_2945449_-|hypothetical-protein
MAEGVLSDLADNLRVTITDAKGIELLSFRLASGDRYILSTQNGSVTNRKLSRDDLYWSKDTIMEVVREMGSNN
>NZ_CP016012.1|WP_000929805.1|2944542_2945145_-|DUF1367-family-protein
MAHELQLIKQSSGILIPATPETSEILQSKIKLGAVLVAEFRQVRNPAFHRRFFALLNLGFEYWEPTGGTISANERKLVNGYAKFLAAYGGNESALLDAAEQYLEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEVEFQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSFAG
>NZ_CP016012.1|WP_001096552.1|2943722_2944334_-|recombination-protein-NinG
MAKLPRRKCANKECRQWFHPIREGQIVCSYQCASAVGKEQTRKAREAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLGCISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVYNVYKSGNIEAYRAALVERYGEAAVLALENNNTPHRWTVEELKEIRLAALADLRALKKLEAA
>NZ_CP016012.1|WP_001617856.1|2943579_2943726_-|YlcG-family-protein
MKPELIEILRMRWLRLRIYRYRGSFPVAYRILRNYVRIEAKREHRNES
>NZ_CP016012.1|WP_001047631.1|2942792_2943590_-|antitermination-protein
MNLESLPKYFSPKSMMPGAVPCGITSDTLTITDVMASLGLLTAKAAVGIELYLAKAGVLSSENIIAYIRQLAEQRAERHGALRKMEKGKRSKFLDTMARYVFRDYSLSAASLVTCSSCHGAKLIDAEVFTNKVTYPDGKPPKWVKDTKGISPSDWEVWKSVREQVRVVCKACDGKGHVKNECRCRGRGEILDKKKSELQGVPVYKKCPRCKGRGYPRLKDTEIFKALGVTEMVWRYNYKLFFDRLVEHCHIEESYAEKVLGNVTR
>NZ_CP016012.1|WP_001574095.1|2948917_2949292_-|hypothetical-protein
MAYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
>NZ_CP016012.1|WP_000370145.1|2949257_2949497_-|helix-turn-helix-domain-containing-protein
MDNQLKIKISNHMTQMSIGEHFGISSQAVGKWLRKGVIPPRRILPLCEILEWKVTPHEIDPAAYPNPTDGLPSQEASAK
>NZ_CP016012.1|WP_001038966.1|2949616_2950027_+|helix-turn-helix-domain-containing-protein
MNKNLHPIFAKRIQQVLDENGWSMADLSRRVMLSHTSVRKWASGTSVASGERLKRLSAVTGRPEYWFFMEPGDESEGERAEPKPRVLDEKEETLLSLFNQLPEAEKLRVILHTKAVLQEMDLLKNNVFDLINDLKK
>NZ_CP016012.1|WP_014344008.1|2950076_2950337_+|hypothetical-protein
MLQNRTFSCTFCFTNRTFGFIVSFIDNKRIVVRCKTFRWPAIRQTRVRMIDFARRPARQQAVPLNRIEVLIRRLCYLLAQKGDPDA
>NZ_CP016012.1|WP_000917564.1|2950329_2950488_+|hypothetical-protein
MLKQCGYCRKSIDEGKEVKNTLLYRNGSQLASKEKEYCSRQCAEYDQMAHES
>NZ_CP016012.1|WP_001668146.1|2950509_2950809_+|hypothetical-protein
MKNSPLIWRGFIHPEFKTGEIMEIVKIEMNLKAVNKSIALFNCENLDGGYVLGKFDSPHCAVKAISLLTVKVSDGEQAGFGNYRSYKLDYSEKFYQTIH
>NZ_CP016012.1|WP_000017133.1|2950935_2953821_+|PD-(D/E)XK-nuclease-like-domain-containing-protein
MSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKSGAKLKDYFKAVATNFPVVNELPPEGELSLTFCDYYQLAKDNMTWTQIPGVTLPSSEAAAAARQHIVDGVDTETGEVLEDHTENFGNESNSPAQATAPAPELTVVATMPLRHRVLAQYIGEGEYLYHVDASQKKEILRLEMDTDNSYVQNLLLAAENVEAFKKAIEHDIHKIVNAVKKVFPVDGKTPELATVIQFLKTWFETEHIDRGLLVKEWAKGNRVSAIQRTESGANAGGGNKTDRNPDYEHTLDTLDVEIAMATLPMDFNIYELPGSVYRRAKEIVKKKESPFKEWSAALRATPGILDYSRAAIFALIRSAHPEFYHYPGRLQGYINANLTETDHENPTEEALTAARHTPEKDAVEEANRQLAAARGEYVEGISDPNDPKWVKTGTSQPTTEPELVKNVGNGIFDVSALMQNSSTHGTETNPETTSNVQVQKADSDEKQAGDAVQAGEDDLGTGKEAVTVENQNQAEAQQNVPESQQEEPEAAWPEYFEPGRYEGVPNEVYHAANGISSTQVKDARVSLMYFNARHVEKTIVKERSPVLDMGNLVHALALQPENLEAEFSVEPEIPEGAFTTTATLREFIDAHNASLPALLSADDIKALLEEYNATLPSQMPLGASVDETYASYEQLPEEFQRIENGTKHTATAMKACIKEYNVTLPAPVKTSGSRDALLEQLAIINPDLVAQEAQKSSPLKVSGTKADLIQAVKSVNPAVVFADELLDAWRENTEGKVLVTRQQLSTALNIQKALLEHPTAGKLLTHPSRAVEVSYFGIDEETGLEVRVRPDLELDMGGLRIGADLKTISMWNIKQEGLRAKLHREIIDRDYHLSAAMYCETAALDQFFWIFVNKDENYHWVAIIEASTELLELGMLEYRKTMREIANGFDTGEWSAPITEDYTDELNDFDVRRLEALRVQA
>NZ_CP016012.1|WP_001539618.1|2953783_2954941_+|recombinase-RecT
MCAALKRCAYRHKGKIMENTNIVTTEQQAPNTISASNAIFNVQALGQLTAFANLMADSQVTVPAHLAGKPADCMAIVMQAMQWGMNPYAVAQKTHLVNGVLGYEAQLVNAVIASSSAIHGRFHYRYGGDWERCTRTQEITRDKNGKNGKYTVTERVRGWTDEDEIGLFVQVGAILRGESEITWGEPLYLSGVVTRNSPLWVSNPKQQIAYLGVKYWARLYCPEVILGVYSPDEVEQREEREINPAPVQRMSVQEITSEVSTRTSAQESAANVDAVADDLRERIDTASSVDQAKAIRADIESQKALLGTALFTELKNKAVKRYYQVDAQNKVEAVINSIPNPGEPEAAEMFAKAESTLGAAKRHLGDELHDKYRVTLDDMKPEYIG
>NZ_CP016012.1|WP_001237031.1|2954983_2955223_+|DUF4060-family-protein
MRLINRSKQSPLGRRACDVALAAHHEKFGDYGRQKHVTNYTVVVDGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN
>NZ_CP016012.1|WP_000065276.1|2955263_2955512_+|excisionase-family-protein
MSNIIQLTPNKWVSEKVLIAVTGLKPGTITRARKESWMLGREYLHISPDGNPKPSSECIYNREAVDQWIEAQKKNQPGAKTT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP016012_3	3.1\|2948285\|56\|NZ_CP016012\|CRISPRCasFinder	2948285-2948340	56	JQ288021	Salmonella phage SPN3UB, complete genome	36120-36175	0	1.0
NZ_CP016012_3	3.1\|2948285\|56\|NZ_CP016012\|CRISPRCasFinder	2948285-2948340	56	NC_010393	Phage Gifsy-2, complete genome	8573-8628	0	1.0
NZ_CP016012_3	3.1\|2948285\|56\|NZ_CP016012\|CRISPRCasFinder	2948285-2948340	56	NC_010392	Phage Gifsy-1, complete genome	39722-39777	0	1.0
NZ_CP016012_2	2.35\|960684\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	960684-960715	32	NC_004313	Salmonella phage ST64B, complete genome	31961-31992	1	0.969
NZ_CP016012_2	2.35\|960684\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	960684-960715	32	KU927493	Salmonella phage 118970_sal3, complete genome	69573-69604	1	0.969
NZ_CP016012_2	2.35\|960684\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	960684-960715	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	31961-31992	1	0.969
NZ_CP016012_2	2.40\|960682\|34\|NZ_CP016012\|PILER-CR	960682-960715	34	NC_004313	Salmonella phage ST64B, complete genome	31959-31992	2	0.941
NZ_CP016012_2	2.40\|960682\|34\|NZ_CP016012\|PILER-CR	960682-960715	34	KU927493	Salmonella phage 118970_sal3, complete genome	69571-69604	2	0.941
NZ_CP016012_2	2.40\|960682\|34\|NZ_CP016012\|PILER-CR	960682-960715	34	AY055382	Salmonella typhimurium phage ST64B complete sequence	31959-31992	2	0.941
NZ_CP016012_1	1.19\|942401\|32\|NZ_CP016012\|CRISPRCasFinder	942401-942432	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
NZ_CP016012_1	1.19\|942401\|32\|NZ_CP016012\|CRISPRCasFinder	942401-942432	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
NZ_CP016012_1	1.19\|942401\|32\|NZ_CP016012\|CRISPRCasFinder	942401-942432	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
NZ_CP016012_1	1.21\|942402\|31\|NZ_CP016012\|CRT	942402-942432	31	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90822	5	0.839
NZ_CP016012_1	1.21\|942402\|31\|NZ_CP016012\|CRT	942402-942432	31	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271430	5	0.839
NZ_CP016012_1	1.21\|942402\|31\|NZ_CP016012\|CRT	942402-942432	31	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112053-112083	5	0.839
NZ_CP016012_1	1.21\|942402\|31\|NZ_CP016012\|CRT	942402-942432	31	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224972-225002	5	0.839
NZ_CP016012_2	2.10\|959711\|32\|NZ_CP016012\|PILER-CR	959711-959742	32	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10362	5	0.844
NZ_CP016012_2	2.19\|959708\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959708-959739	32	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10362	5	0.844
NZ_CP016012_1	1.13\|942036\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942036-942067	32	MK448383	Streptococcus satellite phage Javan248, complete genome	4976-5007	6	0.812
NZ_CP016012_1	1.18\|942341\|31\|NZ_CP016012\|CRISPRCasFinder	942341-942371	31	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33598	6	0.806
NZ_CP016012_1	1.19\|942401\|32\|NZ_CP016012\|CRISPRCasFinder	942401-942432	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
NZ_CP016012_1	1.21\|942402\|31\|NZ_CP016012\|CRT	942402-942432	31	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654403-654433	6	0.806
NZ_CP016012_2	2.6\|959467\|32\|NZ_CP016012\|PILER-CR	959467-959498	32	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30992	6	0.812
NZ_CP016012_2	2.10\|959711\|32\|NZ_CP016012\|PILER-CR	959711-959742	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5482	6	0.812
NZ_CP016012_2	2.15\|959464\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959464-959495	32	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30992	6	0.812
NZ_CP016012_2	2.19\|959708\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959708-959739	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5482	6	0.812
NZ_CP016012_1	1.2\|941365\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	941365-941396	32	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	51303-51334	7	0.781
NZ_CP016012_1	1.15\|942158\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942158-942189	32	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	126588-126619	7	0.781
NZ_CP016012_1	1.15\|942158\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942158-942189	32	NZ_CP010602	Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence	115384-115415	7	0.781
NZ_CP016012_1	1.15\|942158\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942158-942189	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	133543-133574	7	0.781
NZ_CP016012_1	1.15\|942158\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942158-942189	32	NZ_CP010708	Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence	115381-115412	7	0.781
NZ_CP016012_1	1.15\|942158\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942158-942189	32	NZ_CP010737	Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence	183735-183766	7	0.781
NZ_CP016012_1	1.19\|942401\|32\|NZ_CP016012\|CRISPRCasFinder	942401-942432	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
NZ_CP016012_1	1.19\|942401\|32\|NZ_CP016012\|CRISPRCasFinder	942401-942432	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
NZ_CP016012_1	1.20\|942341\|32\|NZ_CP016012\|CRT,PILER-CR	942341-942372	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	4747-4778	7	0.781
NZ_CP016012_1	1.20\|942341\|32\|NZ_CP016012\|CRT,PILER-CR	942341-942372	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	389262-389293	7	0.781
NZ_CP016012_1	1.20\|942341\|32\|NZ_CP016012\|CRT,PILER-CR	942341-942372	32	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33599	7	0.781
NZ_CP016012_1	1.21\|942402\|31\|NZ_CP016012\|CRT	942402-942432	31	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052325	7	0.774
NZ_CP016012_2	2.6\|959467\|32\|NZ_CP016012\|PILER-CR	959467-959498	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294661	7	0.781
NZ_CP016012_2	2.15\|959464\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959464-959495	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294661	7	0.781
NZ_CP016012_2	2.30\|960379\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	960379-960410	32	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304164-304195	7	0.781
NZ_CP016012_2	2.30\|960379\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	960379-960410	32	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194537	7	0.781
NZ_CP016012_1	1.8\|941731\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	941731-941762	32	CP047389	Agrobacterium sp. CGMCC 11546 plasmid pA	272606-272637	8	0.75
NZ_CP016012_1	1.15\|942158\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942158-942189	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	276525-276556	8	0.75
NZ_CP016012_1	1.15\|942158\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942158-942189	32	AY639599	Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds	1396-1427	8	0.75
NZ_CP016012_1	1.16\|942219\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942219-942250	32	NC_019364	Sulfitobacter guttiformis plasmid pSD118, complete sequence	10703-10734	8	0.75
NZ_CP016012_1	1.19\|942401\|32\|NZ_CP016012\|CRISPRCasFinder	942401-942432	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
NZ_CP016012_2	2.30\|960379\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	960379-960410	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756038-1756069	8	0.75
NZ_CP016012_2	2.30\|960379\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	960379-960410	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879041	8	0.75
NZ_CP016012_1	1.10\|941853\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	941853-941884	32	MN693011	Marine virus AFVG_117M58, complete genome	34901-34932	9	0.719
NZ_CP016012_1	1.13\|942036\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942036-942067	32	MK250029	Prevotella phage Lak-C1, complete genome	220147-220178	9	0.719
NZ_CP016012_1	1.13\|942036\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942036-942067	32	MK250016	Prevotella phage Lak-A1, complete genome	256365-256396	9	0.719
NZ_CP016012_1	1.13\|942036\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942036-942067	32	MK250019	Prevotella phage Lak-A2, complete genome	177499-177530	9	0.719
NZ_CP016012_1	1.18\|942341\|31\|NZ_CP016012\|CRISPRCasFinder	942341-942371	31	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72061	9	0.71
NZ_CP016012_1	1.18\|942341\|31\|NZ_CP016012\|CRISPRCasFinder	942341-942371	31	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3414-3444	9	0.71
NZ_CP016012_1	1.18\|942341\|31\|NZ_CP016012\|CRISPRCasFinder	942341-942371	31	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232723-232753	9	0.71
NZ_CP016012_1	1.18\|942341\|31\|NZ_CP016012\|CRISPRCasFinder	942341-942371	31	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129920	9	0.71
NZ_CP016012_1	1.18\|942341\|31\|NZ_CP016012\|CRISPRCasFinder	942341-942371	31	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109942-109972	9	0.71
NZ_CP016012_1	1.18\|942341\|31\|NZ_CP016012\|CRISPRCasFinder	942341-942371	31	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148698-148728	9	0.71
NZ_CP016012_1	1.18\|942341\|31\|NZ_CP016012\|CRISPRCasFinder	942341-942371	31	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3414-3444	9	0.71
NZ_CP016012_2	2.1\|959159\|32\|NZ_CP016012\|PILER-CR,CRISPRCasFinder,CRT	959159-959190	32	NZ_CP047227	Moraxella osloensis strain YV1 plasmid p1, complete sequence	115808-115839	9	0.719
NZ_CP016012_2	2.2\|959220\|32\|NZ_CP016012\|PILER-CR,CRISPRCasFinder,CRT	959220-959251	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	616323-616354	9	0.719
NZ_CP016012_2	2.2\|959220\|32\|NZ_CP016012\|PILER-CR,CRISPRCasFinder,CRT	959220-959251	32	NC_024369	Vibrio phage X29, complete genome	16391-16422	9	0.719
NZ_CP016012_2	2.2\|959220\|32\|NZ_CP016012\|PILER-CR,CRISPRCasFinder,CRT	959220-959251	32	MK575466	Vibrio phage Rostov 7, complete genome	37606-37637	9	0.719
NZ_CP016012_2	2.2\|959220\|32\|NZ_CP016012\|PILER-CR,CRISPRCasFinder,CRT	959220-959251	32	KJ545483	Vibrio phage phi 2, complete genome	16391-16422	9	0.719
NZ_CP016012_2	2.6\|959467\|32\|NZ_CP016012\|PILER-CR	959467-959498	32	MN693555	Marine virus AFVG_25M96, complete genome	8842-8873	9	0.719
NZ_CP016012_2	2.6\|959467\|32\|NZ_CP016012\|PILER-CR	959467-959498	32	MN693550	Marine virus AFVG_25M93, complete genome	10730-10761	9	0.719
NZ_CP016012_2	2.6\|959467\|32\|NZ_CP016012\|PILER-CR	959467-959498	32	MN693245	Marine virus AFVG_25M69, complete genome	11115-11146	9	0.719
NZ_CP016012_2	2.6\|959467\|32\|NZ_CP016012\|PILER-CR	959467-959498	32	MN693208	Marine virus AFVG_25M383, complete genome	25882-25913	9	0.719
NZ_CP016012_2	2.6\|959467\|32\|NZ_CP016012\|PILER-CR	959467-959498	32	MN693436	Marine virus AFVG_25M57, complete genome	28024-28055	9	0.719
NZ_CP016012_2	2.6\|959467\|32\|NZ_CP016012\|PILER-CR	959467-959498	32	MN693515	Marine virus AFVG_25M70, complete genome	10467-10498	9	0.719
NZ_CP016012_2	2.6\|959467\|32\|NZ_CP016012\|PILER-CR	959467-959498	32	MN693320	Marine virus AFVG_25M58, complete genome	28018-28049	9	0.719
NZ_CP016012_2	2.6\|959467\|32\|NZ_CP016012\|PILER-CR	959467-959498	32	MN693286	Marine virus AFVG_25M92, complete genome	9636-9667	9	0.719
NZ_CP016012_2	2.6\|959467\|32\|NZ_CP016012\|PILER-CR	959467-959498	32	MN693549	Marine virus AFVG_25M89, complete genome	11533-11564	9	0.719
NZ_CP016012_2	2.12\|959833\|32\|NZ_CP016012\|PILER-CR	959833-959864	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	213856-213887	9	0.719
NZ_CP016012_2	2.15\|959464\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959464-959495	32	MN693555	Marine virus AFVG_25M96, complete genome	8842-8873	9	0.719
NZ_CP016012_2	2.15\|959464\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959464-959495	32	MN693550	Marine virus AFVG_25M93, complete genome	10730-10761	9	0.719
NZ_CP016012_2	2.15\|959464\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959464-959495	32	MN693245	Marine virus AFVG_25M69, complete genome	11115-11146	9	0.719
NZ_CP016012_2	2.15\|959464\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959464-959495	32	MN693208	Marine virus AFVG_25M383, complete genome	25882-25913	9	0.719
NZ_CP016012_2	2.15\|959464\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959464-959495	32	MN693436	Marine virus AFVG_25M57, complete genome	28024-28055	9	0.719
NZ_CP016012_2	2.15\|959464\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959464-959495	32	MN693515	Marine virus AFVG_25M70, complete genome	10467-10498	9	0.719
NZ_CP016012_2	2.15\|959464\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959464-959495	32	MN693320	Marine virus AFVG_25M58, complete genome	28018-28049	9	0.719
NZ_CP016012_2	2.15\|959464\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959464-959495	32	MN693286	Marine virus AFVG_25M92, complete genome	9636-9667	9	0.719
NZ_CP016012_2	2.15\|959464\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959464-959495	32	MN693549	Marine virus AFVG_25M89, complete genome	11533-11564	9	0.719
NZ_CP016012_2	2.21\|959830\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959830-959861	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	213856-213887	9	0.719
NZ_CP016012_2	2.35\|960684\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	960684-960715	32	NZ_CP015221	Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence	111308-111339	9	0.719
NZ_CP016012_1	1.6\|941609\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	941609-941640	32	MG945729	UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome	1763-1794	10	0.688
NZ_CP016012_1	1.9\|941792\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	941792-941823	32	MK449008	Streptococcus phage Javan84, complete genome	18935-18966	10	0.688
NZ_CP016012_1	1.9\|941792\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	941792-941823	32	MK448832	Streptococcus phage Javan85, complete genome	18935-18966	10	0.688
NZ_CP016012_1	1.16\|942219\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942219-942250	32	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	62931-62962	10	0.688
NZ_CP016012_1	1.17\|942280\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942280-942311	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	129540-129571	10	0.688
NZ_CP016012_1	1.17\|942280\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942280-942311	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	111984-112015	10	0.688
NZ_CP016012_1	1.17\|942280\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942280-942311	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	46996-47027	10	0.688
NZ_CP016012_1	1.17\|942280\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	942280-942311	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	1850-1881	10	0.688
NZ_CP016012_1	1.18\|942341\|31\|NZ_CP016012\|CRISPRCasFinder	942341-942371	31	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78356-78386	10	0.677
NZ_CP016012_1	1.20\|942341\|32\|NZ_CP016012\|CRT,PILER-CR	942341-942372	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78355-78386	10	0.688
NZ_CP016012_1	1.20\|942341\|32\|NZ_CP016012\|CRT,PILER-CR	942341-942372	32	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72062	10	0.688
NZ_CP016012_1	1.20\|942341\|32\|NZ_CP016012\|CRT,PILER-CR	942341-942372	32	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3413-3444	10	0.688
NZ_CP016012_1	1.20\|942341\|32\|NZ_CP016012\|CRT,PILER-CR	942341-942372	32	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232722-232753	10	0.688
NZ_CP016012_1	1.20\|942341\|32\|NZ_CP016012\|CRT,PILER-CR	942341-942372	32	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129921	10	0.688
NZ_CP016012_1	1.20\|942341\|32\|NZ_CP016012\|CRT,PILER-CR	942341-942372	32	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109941-109972	10	0.688
NZ_CP016012_1	1.20\|942341\|32\|NZ_CP016012\|CRT,PILER-CR	942341-942372	32	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148697-148728	10	0.688
NZ_CP016012_1	1.20\|942341\|32\|NZ_CP016012\|CRT,PILER-CR	942341-942372	32	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3413-3444	10	0.688
NZ_CP016012_2	2.5\|959406\|32\|NZ_CP016012\|PILER-CR	959406-959437	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888441	10	0.688
NZ_CP016012_2	2.5\|959406\|32\|NZ_CP016012\|PILER-CR	959406-959437	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888439	10	0.688
NZ_CP016012_2	2.11\|959772\|32\|NZ_CP016012\|PILER-CR	959772-959803	32	MK047641	Phage NV21, complete genome	23610-23641	10	0.688
NZ_CP016012_2	2.14\|959403\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959403-959434	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888441	10	0.688
NZ_CP016012_2	2.14\|959403\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959403-959434	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888439	10	0.688
NZ_CP016012_2	2.20\|959769\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959769-959800	32	MK047641	Phage NV21, complete genome	23610-23641	10	0.688
NZ_CP016012_2	2.22\|959891\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959891-959922	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	191710-191741	10	0.688
NZ_CP016012_2	2.22\|959891\|32\|NZ_CP016012\|CRISPRCasFinder,CRT	959891-959922	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	237223-237254	10	0.688
NZ_CP016012_2	2.30\|960379\|32\|NZ_CP016012\|CRISPRCasFinder,CRT,PILER-CR	960379-960410	32	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	91874-91905	10	0.688

1. spacer 3.1|2948285|56|NZ_CP016012|CRISPRCasFinder matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 0, identity: 1.0

ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	CRISPR spacer
ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	Protospacer
********************************************************

2. spacer 3.1|2948285|56|NZ_CP016012|CRISPRCasFinder matches to NC_010393 (Phage Gifsy-2, complete genome) position: , mismatch: 0, identity: 1.0

ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	CRISPR spacer
ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	Protospacer
********************************************************

3. spacer 3.1|2948285|56|NZ_CP016012|CRISPRCasFinder matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 0, identity: 1.0

ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	CRISPR spacer
ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	Protospacer
********************************************************

4. spacer 2.35|960684|32|NZ_CP016012|CRISPRCasFinder,CRT matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

5. spacer 2.35|960684|32|NZ_CP016012|CRISPRCasFinder,CRT matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

6. spacer 2.35|960684|32|NZ_CP016012|CRISPRCasFinder,CRT matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

7. spacer 2.40|960682|34|NZ_CP016012|PILER-CR matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 2, identity: 0.941

cgtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
agtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
 *****************.***************

8. spacer 2.40|960682|34|NZ_CP016012|PILER-CR matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 2, identity: 0.941

cgtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
agtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
 *****************.***************

9. spacer 2.40|960682|34|NZ_CP016012|PILER-CR matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 2, identity: 0.941

cgtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
agtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
 *****************.***************

10. spacer 1.19|942401|32|NZ_CP016012|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

11. spacer 1.19|942401|32|NZ_CP016012|CRISPRCasFinder matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

12. spacer 1.19|942401|32|NZ_CP016012|CRISPRCasFinder matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

13. spacer 1.21|942402|31|NZ_CP016012|CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.839

ggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
agatcgcgctggcggcctcatccg-tgccgca	Protospacer
.**************.* ****** *****.

14. spacer 1.21|942402|31|NZ_CP016012|CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 5, identity: 0.839

ggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
agatcgcgctggcggcctcatccg-tgccgca	Protospacer
.**************.* ****** *****.

15. spacer 1.21|942402|31|NZ_CP016012|CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.839

ggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
agatcgcgctggcggcctcatccg-tgccgca	Protospacer
.**************.* ****** *****.

16. spacer 1.21|942402|31|NZ_CP016012|CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.839

ggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
agatcgcgctggcggcctcatccg-tgccgca	Protospacer
.**************.* ****** *****.

17. spacer 2.10|959711|32|NZ_CP016012|PILER-CR matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 5, identity: 0.844

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
ccaggcgatcgcatctgggtgcgggaggcctt	Protospacer
** ***********.***********..* **

18. spacer 2.19|959708|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 5, identity: 0.844

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
ccaggcgatcgcatctgggtgcgggaggcctt	Protospacer
** ***********.***********..* **

19. spacer 1.13|942036|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 6, identity: 0.812

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
tgaaaatcttctttcatagaaacgtatgtatt	Protospacer
*.**************** ** **** * .**

20. spacer 1.18|942341|31|NZ_CP016012|CRISPRCasFinder matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.806

agcacaatcattattagatgaactt--tcatca	CRISPR spacer
aacacaagaattattagatgaacttggtgat--	Protospacer
*.*****  ****************  * **

21. spacer 1.19|942401|32|NZ_CP016012|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgca	Protospacer
 .**************.* ****** *****.

22. spacer 1.21|942402|31|NZ_CP016012|CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 6, identity: 0.806

ggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
ggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
** **************** *** *.* **.

23. spacer 2.6|959467|32|NZ_CP016012|PILER-CR matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 6, identity: 0.812

ggaataaaaatgaatttgagtcaact-ctataa	CRISPR spacer
ataataaaaaagtatttgagtcaactgatata-	Protospacer
. ******** * *************  ****

24. spacer 2.10|959711|32|NZ_CP016012|PILER-CR matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 6, identity: 0.812

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
gtcggcgatcgcatctgggtgcgtgaaacatg	Protospacer
 ..***********.******** *******

25. spacer 2.15|959464|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 6, identity: 0.812

ggaataaaaatgaatttgagtcaact-ctataa	CRISPR spacer
ataataaaaaagtatttgagtcaactgatata-	Protospacer
. ******** * *************  ****

26. spacer 2.19|959708|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 6, identity: 0.812

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
gtcggcgatcgcatctgggtgcgtgaaacatg	Protospacer
 ..***********.******** *******

27. spacer 1.2|941365|32|NZ_CP016012|CRISPRCasFinder,CRT matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 7, identity: 0.781

cagtgcggcagcgcgcaatcgagacacgccat	CRISPR spacer
cggtgcgacagcgagcaatcgagacgggctct	Protospacer
*.*****.***** ***********. **. *

28. spacer 1.15|942158|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccgaaagcagataaaa	Protospacer
  ******* ********* ****** * .**

29. spacer 1.15|942158|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010602 (Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

30. spacer 1.15|942158|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

31. spacer 1.15|942158|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010708 (Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

32. spacer 1.15|942158|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010737 (Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

33. spacer 1.19|942401|32|NZ_CP016012|CRISPRCasFinder matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

34. spacer 1.19|942401|32|NZ_CP016012|CRISPRCasFinder matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
 ** **************** *** *.* **.

35. spacer 1.20|942341|32|NZ_CP016012|CRT,PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

36. spacer 1.20|942341|32|NZ_CP016012|CRT,PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

37. spacer 1.20|942341|32|NZ_CP016012|CRT,PILER-CR matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

agcacaatcattattagatgaactt--tcatcaa	CRISPR spacer
aacacaagaattattagatgaacttggtgatg--	Protospacer
*.*****  ****************  * **

38. spacer 1.21|942402|31|NZ_CP016012|CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.774

ggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
ggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
** ******* ************ . ***

39. spacer 2.6|959467|32|NZ_CP016012|PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.781

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
tgtataaaaatgaatttgaggtaactccctac	Protospacer
 * ***************** .*****. **

40. spacer 2.15|959464|32|NZ_CP016012|CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.781

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
tgtataaaaatgaatttgaggtaactccctac	Protospacer
 * ***************** .*****. **

41. spacer 2.30|960379|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.781

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gcgatgtatgccgcgacgattgaatccacgct	Protospacer
********************.**.  *. .**

42. spacer 2.30|960379|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.781

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
accattcatgccgcgacgaacaagagcgaaca	Protospacer
.* ** .************ *.*********

43. spacer 1.8|941731|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 8, identity: 0.75

caataggacagccattcgagcgcccagagttt	CRISPR spacer
tcacaggacagctattcgagcgcccagtccgt	Protospacer
. *.********.**************  . *

44. spacer 1.15|942158|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
ttgcaacagtttctttccgcatgcagctgctt	Protospacer
 ************** ***** ****.*

45. spacer 1.15|942158|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to AY639599 (Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
gttattcagtttctgaccgccagcagtttgtt	Protospacer
**    ******** ***** *********

46. spacer 1.16|942219|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 8, identity: 0.75

atcatcgggattcattttgttgt--ccgggtggc	CRISPR spacer
gtcatcgtgatgcattttgttgtcccctaatg--	Protospacer
.****** *** ***********  ** ..**

47. spacer 1.19|942401|32|NZ_CP016012|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

gggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
 ** ******* ************ . ***

48. spacer 2.30|960379|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gaaccttatgccacgacgatcgagaacgaaca	Protospacer
* . . ******.************.*****

49. spacer 2.30|960379|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gaaccttatgccacgacgatcgagaacgaaca	Protospacer
* . . ******.************.*****

50. spacer 1.10|941853|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 9, identity: 0.719

aactaacgtctatagctaaatgtagagaaaac	CRISPR spacer
taaaaggttctatagctaaaagtggagaaaat	Protospacer
 *  *.  ************ **.*******.

51. spacer 1.13|942036|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

52. spacer 1.13|942036|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

53. spacer 1.13|942036|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

54. spacer 1.18|942341|31|NZ_CP016012|CRISPRCasFinder matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

55. spacer 1.18|942341|31|NZ_CP016012|CRISPRCasFinder matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

56. spacer 1.18|942341|31|NZ_CP016012|CRISPRCasFinder matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

57. spacer 1.18|942341|31|NZ_CP016012|CRISPRCasFinder matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

58. spacer 1.18|942341|31|NZ_CP016012|CRISPRCasFinder matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

59. spacer 1.18|942341|31|NZ_CP016012|CRISPRCasFinder matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

60. spacer 1.18|942341|31|NZ_CP016012|CRISPRCasFinder matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

61. spacer 2.1|959159|32|NZ_CP016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047227 (Moraxella osloensis strain YV1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ctggaacggcagtatttaaaaggggttattga	CRISPR spacer
cgtaaacggcagtaattaaaagcggtttgcaa	Protospacer
*  .********** ******* ****  ..*

62. spacer 2.2|959220|32|NZ_CP016012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
ccattggtcggattgtttgcgtgcggggccgg	Protospacer
. . .* .****************** * ***

63. spacer 2.2|959220|32|NZ_CP016012|PILER-CR,CRISPRCasFinder,CRT matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

64. spacer 2.2|959220|32|NZ_CP016012|PILER-CR,CRISPRCasFinder,CRT matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

65. spacer 2.2|959220|32|NZ_CP016012|PILER-CR,CRISPRCasFinder,CRT matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

66. spacer 2.6|959467|32|NZ_CP016012|PILER-CR matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

67. spacer 2.6|959467|32|NZ_CP016012|PILER-CR matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

68. spacer 2.6|959467|32|NZ_CP016012|PILER-CR matches to MN693245 (Marine virus AFVG_25M69, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

69. spacer 2.6|959467|32|NZ_CP016012|PILER-CR matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

70. spacer 2.6|959467|32|NZ_CP016012|PILER-CR matches to MN693436 (Marine virus AFVG_25M57, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

71. spacer 2.6|959467|32|NZ_CP016012|PILER-CR matches to MN693515 (Marine virus AFVG_25M70, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

72. spacer 2.6|959467|32|NZ_CP016012|PILER-CR matches to MN693320 (Marine virus AFVG_25M58, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

73. spacer 2.6|959467|32|NZ_CP016012|PILER-CR matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

74. spacer 2.6|959467|32|NZ_CP016012|PILER-CR matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

75. spacer 2.12|959833|32|NZ_CP016012|PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

gactcggcctgttttttgattttgacaatcag	CRISPR spacer
ccgtcggcctgttctttcattttgacttacac	Protospacer
   **********.*** ********   **

76. spacer 2.15|959464|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

77. spacer 2.15|959464|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

78. spacer 2.15|959464|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MN693245 (Marine virus AFVG_25M69, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

79. spacer 2.15|959464|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

80. spacer 2.15|959464|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MN693436 (Marine virus AFVG_25M57, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

81. spacer 2.15|959464|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MN693515 (Marine virus AFVG_25M70, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

82. spacer 2.15|959464|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MN693320 (Marine virus AFVG_25M58, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

83. spacer 2.15|959464|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

84. spacer 2.15|959464|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

85. spacer 2.21|959830|32|NZ_CP016012|CRISPRCasFinder,CRT matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

gactcggcctgttttttgattttgacaatcag	CRISPR spacer
ccgtcggcctgttctttcattttgacttacac	Protospacer
   **********.*** ********   **

86. spacer 2.35|960684|32|NZ_CP016012|CRISPRCasFinder,CRT matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taagttac---gccagtgcgggcgtgttgctcatc	CRISPR spacer
---actgcgcggcgagtgcgggcgcgttgctcatg	Protospacer
   ..*.*   ** **********.*********

87. spacer 1.6|941609|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to MG945729 (UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome) position: , mismatch: 10, identity: 0.688

aaaataacaacattatcagtgtgaaaagtctc	CRISPR spacer
gcaataacaaccttatcagtgtcaactttaat	Protospacer
. ********* ********** **   *  .

88. spacer 1.9|941792|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to MK449008 (Streptococcus phage Javan84, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

89. spacer 1.9|941792|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to MK448832 (Streptococcus phage Javan85, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

90. spacer 1.16|942219|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

atcatcgggattcattttgttgtccgggtggc	CRISPR spacer
attatcaggattcattttgttgtattcatcaa	Protospacer
**.***.**************** .  .* .

91. spacer 1.17|942280|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

92. spacer 1.17|942280|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

93. spacer 1.17|942280|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

94. spacer 1.17|942280|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

95. spacer 1.18|942341|31|NZ_CP016012|CRISPRCasFinder matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.677

agcacaatcattattagatgaactttcatca	CRISPR spacer
tcttatggcattattagatgaattttcaaca	Protospacer
  .   . **************.***** **

96. spacer 1.20|942341|32|NZ_CP016012|CRT,PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
tcttatggcattattagatgaattttcaacaa	Protospacer
  .   . **************.***** ***

97. spacer 1.20|942341|32|NZ_CP016012|CRT,PILER-CR matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

98. spacer 1.20|942341|32|NZ_CP016012|CRT,PILER-CR matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

99. spacer 1.20|942341|32|NZ_CP016012|CRT,PILER-CR matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

100. spacer 1.20|942341|32|NZ_CP016012|CRT,PILER-CR matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

101. spacer 1.20|942341|32|NZ_CP016012|CRT,PILER-CR matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

102. spacer 1.20|942341|32|NZ_CP016012|CRT,PILER-CR matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

103. spacer 1.20|942341|32|NZ_CP016012|CRT,PILER-CR matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

104. spacer 2.5|959406|32|NZ_CP016012|PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

105. spacer 2.5|959406|32|NZ_CP016012|PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

106. spacer 2.11|959772|32|NZ_CP016012|PILER-CR matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 10, identity: 0.688

ccgaatatggtgataatgttgcaccttcgctc	CRISPR spacer
ctacttatggtgataatgtttcaccgtcttgg	Protospacer
*..  *************** **** ** .

107. spacer 2.14|959403|32|NZ_CP016012|CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

108. spacer 2.14|959403|32|NZ_CP016012|CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

109. spacer 2.20|959769|32|NZ_CP016012|CRISPRCasFinder,CRT matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 10, identity: 0.688

ccgaatatggtgataatgttgcaccttcgctc	CRISPR spacer
ctacttatggtgataatgtttcaccgtcttgg	Protospacer
*..  *************** **** ** .

110. spacer 2.22|959891|32|NZ_CP016012|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.688

ccaataaccgacgagggcaaacgccgtgcgcg	CRISPR spacer
atcagcgccgacgagggcacccgccgtgcggt	Protospacer
 . *  .************  *********

111. spacer 2.22|959891|32|NZ_CP016012|CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.688

ccaataaccgacgagggcaaacgccgtgcgcg	CRISPR spacer
atcagcgccgacgagggcacccgccgtgcggt	Protospacer
 . *  .************  *********

112. spacer 2.30|960379|32|NZ_CP016012|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 10, identity: 0.688

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
tttgtccatgccgcgacgatcgataccgaaaa	Protospacer
 . .* .**************** * ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1127179 : 1132992

Enterobacteria_phage(100.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000783706.1\|1127179_1129513_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.5
WP_000743153.1\|1129527_1129848_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001216598.1\|1129844_1130072_-	hypothetical protein	NA	NA	NA	NA
WP_000980354.1\|1130068_1130626_-	ash family protein	Q7M2A7	Enterobacteria_phage	2.7e-29	66.4
WP_000556587.1\|1130622_1130889_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_000194694.1\|1131429_1132167_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	3.1e-81	65.3
WP_000984206.1\|1132163_1132409_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	4.8e-31	76.5
WP_000210079.1\|1132425_1132992_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	3.8e-55	62.2

DBSCAN-SWA_2

1136081 : 1225857

Cronobacter_phage(65.12%)

portal,holin,plate,head,integrase,tail,terminase,capsid,tRNA

attL 1137457:1137504|attR 1169133:1169180

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000124716.1\|1136081_1137275_-\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	2.6e-106	49.6
1137457:1137504	attL	NA	NA	NA	NA
WP_000290918.1\|1137620_1138631_-\|integrase	tyrosine-type recombinase/integrase	F1BUN9	Cronobacter_phage	9.5e-174	85.7
WP_001047672.1\|1138630_1139197_-	phage repressor protein CI	F1BUN8	Cronobacter_phage	1.1e-65	59.7
WP_000204908.1\|1139342_1139546_+	hypothetical protein	F1BUN7	Cronobacter_phage	1.0e-10	52.0
WP_000460879.1\|1139583_1140087_+	phage regulatory CII family protein	F1BUN6	Cronobacter_phage	1.5e-58	71.3
WP_000643375.1\|1140096_1140324_+	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_000996734.1\|1140313_1140739_+	hypothetical protein	F1BUN5	Cronobacter_phage	2.2e-23	49.6
WP_000022786.1\|1140738_1141140_+	hypothetical protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
WP_000057335.1\|1141207_1141438_+	DUF2732 family protein	NA	NA	NA	NA
WP_000985848.1\|1141428_1141758_+	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	2.0e-11	45.2
WP_000279398.1\|1141747_1142581_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	F1BUN1	Cronobacter_phage	1.6e-105	68.3
WP_000171003.1\|1142577_1144599_+	replication endonuclease	F1BUM9	Cronobacter_phage	1.9e-298	74.9
WP_000960961.1\|1144711_1144930_+	hypothetical protein	E5G6M0	Salmonella_phage	3.6e-06	49.1
WP_001669965.1\|1144903_1145227_-	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	8.0e-50	92.3
WP_000038205.1\|1145223_1146285_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.0e-163	77.1
WP_001151940.1\|1146281_1148057_-	hypothetical protein	F1BUM5	Cronobacter_phage	7.0e-289	82.6
WP_000018802.1\|1148217_1149021_+\|capsid	GPO family capsid scaffolding protein	F1BUM4	Cronobacter_phage	4.1e-79	56.4
WP_000550496.1\|1149082_1150105_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
WP_001218537.1\|1150108_1150810_+\|terminase	terminase	F1BUM0	Cronobacter_phage	9.4e-88	66.8
WP_001628758.1\|1150906_1151359_+\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	3.6e-64	82.0
WP_000084220.1\|1151355_1151862_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.2e-64	69.8
WP_000560083.1\|1151858_1152566_+	hypothetical protein	F1BUL6	Cronobacter_phage	6.8e-102	76.9
WP_000220203.1\|1152562_1153690_+	DUF2586 family protein	F1BUL5	Cronobacter_phage	1.9e-175	83.7
WP_000166743.1\|1153686_1154142_+	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
WP_001154425.1\|1154151_1154445_+\|holin	phage holin family protein	C7BGD7	Burkholderia_phage	1.3e-14	46.2
WP_000175560.1\|1154441_1154783_+	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_000376370.1\|1154782_1155115_+	hypothetical protein	F1BUL2	Cronobacter_phage	6.7e-36	70.9
WP_000411339.1\|1155261_1155519_+\|tail	putative phage tail assembly chaperone	A5X9I7	Aeromonas_virus	3.6e-21	63.4
WP_000811087.1\|1155706_1157677_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	9.2e-266	68.8
WP_001002797.1\|1157673_1158003_+	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_000136921.1\|1157999_1159184_+\|plate	baseplate J/gp47 family protein	F1BUK6	Cronobacter_phage	6.7e-179	78.4
WP_001001823.1\|1159176_1159764_+	hypothetical protein	F1BUK5	Cronobacter_phage	8.4e-90	82.1
WP_000084299.1\|1159773_1161879_+\|tail	phage tail protein	S4TP62	Salmonella_phage	8.8e-198	69.0
WP_000861354.1\|1161891_1162446_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	9.4e-91	89.5
WP_000267955.1\|1162435_1163161_+	hypothetical protein	F1BUK1	Cronobacter_phage	5.5e-67	56.0
WP_000200789.1\|1163132_1163678_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
WP_000977536.1\|1163677_1165381_+	hypothetical protein	F1BUJ7	Cronobacter_phage	4.9e-223	81.3
WP_000136561.1\|1166061_1167180_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_001177838.1\|1168805_1169054_-	hypothetical protein	NA	NA	NA	NA
WP_000342601.1\|1169569_1170733_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
1169133:1169180	attR	NA	NA	NA	NA
WP_000196147.1\|1170740_1172921_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	9.9e-19	34.0
WP_000533874.1\|1172917_1174327_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_001237676.1\|1174391_1185557_-	Ig-like domain repeat protein	NA	NA	NA	NA
WP_001518569.1\|1186170_1186653_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000242603.1\|1186802_1187279_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001112990.1\|1187268_1187559_+	RnfH family protein	NA	NA	NA	NA
WP_001203445.1\|1187724_1188063_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880965.1\|1188211_1189873_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059155.1\|1189958_1190837_-	NAD(+) kinase	NA	NA	NA	NA
WP_001518875.1\|1190959_1191550_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001294020.1\|1191584_1192190_-	hypothetical protein	NA	NA	NA	NA
WP_127172650.1\|1192310_1193597_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001537507.1\|1193616_1194408_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460052.1\|1194573_1195935_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256453.1\|1196187_1196436_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043266.1\|1196454_1197003_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000469804.1\|1197047_1197815_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000065257.1\|1197855_1198203_+	50S ribosomal protein L19	NA	NA	NA	NA
WP_001030985.1\|1198359_1199580_-	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_001212380.1\|1199572_1200091_-	YfiR family protein	NA	NA	NA	NA
WP_001168062.1\|1200530_1201601_+	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_000225194.1\|1201610_1202732_+	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_000632386.1\|1202789_1203698_+	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000200080.1\|1203658_1204819_-	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_010989056.1\|1204918_1204966_-	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_000178449.1\|1205069_1205408_-	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000197660.1\|1205679_1206417_-	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000079130.1\|1206548_1207529_+	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000992639.1\|1207525_1208257_+	polyphenol oxidase	NA	NA	NA	NA
WP_001235092.1\|1208386_1210960_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.5
WP_000985653.1\|1217034_1217490_+	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
WP_000807818.1\|1217593_1218895_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.2e-43	30.4
WP_001264478.1\|1218891_1219215_-	YfiM family lipoprotein	NA	NA	NA	NA
WP_000949286.1\|1219259_1220615_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000082646.1\|1220729_1223390_-	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000183641.1\|1223443_1224124_-\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_001098732.1\|1224196_1224616_-	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
WP_000997365.1\|1224819_1225857_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_3

1230496 : 1281663

Salmonella_phage(40.43%)

portal,protease,holin,head,integrase,tail,transposase,terminase,lysis,capsid,tRNA

attL 1224829:1224843|attR 1238474:1238488

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1224829:1224843	attL	NA	NA	NA	NA
WP_000083342.1\|1230496_1231234_+\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000989165.1\|1231218_1232841_-	L-aspartate oxidase	NA	NA	NA	NA
WP_014344135.1\|1233104_1233269_+	rpoE leader peptide RseD	NA	NA	NA	NA
WP_000003307.1\|1233265_1233841_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_001168374.1\|1233872_1234523_+	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000812017.1\|1234522_1235479_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_000589050.1\|1235475_1235955_+	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_001007934.1\|1236452_1237682_+\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	4.9e-233	94.1
WP_001670787.1\|1237659_1237944_-	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
WP_001237031.1\|1237984_1238224_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_077248255.1\|1238266_1239424_-	recombinase RecT	S4TTE8	Salmonella_phage	3.9e-216	99.5
1238474:1238488	attR	NA	NA	NA	NA
WP_000017128.1\|1239386_1242314_-	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	99.2
WP_001539619.1\|1242440_1242791_-	hypothetical protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
WP_000917562.1\|1242812_1242971_-	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
WP_000950426.1\|1243427_1244090_-	hypothetical protein	NA	NA	NA	NA
WP_000356948.1\|1244089_1244476_-	hypothetical protein	NA	NA	NA	NA
WP_001111772.1\|1244468_1245308_-	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.5e-31	33.3
WP_000660736.1\|1245366_1245762_-	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	1.9e-37	61.4
WP_000643689.1\|1245861_1246104_+	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	2.1e-23	64.1
WP_010835408.1\|1246063_1246438_+	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
WP_000024044.1\|1246529_1247414_+	replication protein	K7PGT1	Enterobacteria_phage	1.3e-46	47.2
WP_000801764.1\|1247410_1248106_+	hypothetical protein	G8C7U6	Escherichia_phage	2.1e-55	45.4
WP_000664368.1\|1248119_1248818_+	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	2.1e-63	85.7
WP_000877757.1\|1248925_1249558_+	hypothetical protein	NA	NA	NA	NA
WP_001217669.1\|1249800_1250034_+	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_014343878.1\|1250150_1250399_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_000929791.1\|1250433_1251036_+	DUF1367 family protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
WP_001096562.1\|1251244_1251856_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.8e-90	98.5
WP_000801757.1\|1251852_1251993_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001097241.1\|1251989_1252667_+	antitermination protein	I6PDF8	Cronobacter_phage	7.7e-63	54.0
WP_000211410.1\|1252938_1253502_+	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
WP_000657897.1\|1254008_1254197_+	hypothetical protein	NA	NA	NA	NA
WP_001110783.1\|1254411_1255098_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
WP_001574216.1\|1255373_1255703_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_000984581.1\|1255686_1256139_+	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
WP_001533543.1\|1256156_1256609_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_000669690.1\|1256844_1257246_-	PPC domain-containing protein	NA	NA	NA	NA
WP_001102153.1\|1257532_1258078_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000623091.1\|1258049_1259981_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
WP_000201415.1\|1259964_1260168_+	gpW family protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000831821.1\|1260164_1261745_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_001189503.1\|1261734_1263231_+	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
WP_000011260.1\|1263243_1263591_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_000522566.1\|1263645_1264674_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000201486.1\|1264731_1265091_+	DNA-packaging protein FI	NA	NA	NA	NA
WP_000083294.1\|1265101_1265485_+\|head,tail	head-tail joining protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
WP_000677089.1\|1265512_1266091_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000817263.1\|1266139_1267270_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
WP_000033885.1\|1267378_1267780_+\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000971954.1\|1267787_1268534_+	Ig-like domain-containing protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
WP_000479607.1\|1268584_1268980_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_010989052.1\|1268976_1269315_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000372072.1\|1269286_1272382_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
WP_000447369.1\|1272384_1272714_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_001152689.1\|1272723_1273422_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
WP_000662739.1\|1273428_1274166_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
WP_000246126.1\|1274063_1274711_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
WP_000514917.1\|1274772_1278135_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
WP_000178853.1\|1278173_1278416_+	hypothetical protein	NA	NA	NA	NA
WP_001144691.1\|1278469_1280842_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
WP_000593433.1\|1280838_1281663_+	macro domain-containing protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0

DBSCAN-SWA_4

1745470 : 1754641

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569168.1\|1745470_1746418_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
WP_000824854.1\|1746401_1747133_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1747113_1747221_-	protein YohO	NA	NA	NA	NA
WP_001240417.1\|1747280_1748012_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272850.1\|1748234_1749920_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
WP_000598637.1\|1749916_1750636_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1750682_1751150_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_001197951.1\|1751206_1751737_-	YehR family lipoprotein	NA	NA	NA	NA
WP_000703137.1\|1751908_1752367_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195330.1\|1752607_1754641_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_5

1822732 : 1833239

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001111837.1\|1822732_1824136_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
WP_000981471.1\|1824313_1825207_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_000697840.1\|1825583_1826669_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_001023659.1\|1826668_1827568_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
WP_000857530.1\|1827615_1828494_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
WP_000973714.1\|1828494_1829046_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
WP_000018224.1\|1829051_1830026_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000648783.1\|1830041_1830815_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000565902.1\|1830819_1831899_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
WP_000126351.1\|1831925_1833239_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	9.1e-52	35.1

DBSCAN-SWA_6

1929767 : 1937018

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|1929767_1930187_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000457658.1\|1930189_1931458_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.4e-227	92.2
WP_000208509.1\|1931912_1932125_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131109.1\|1932135_1932324_+	hypothetical protein	NA	NA	NA	NA
WP_001080660.1\|1932581_1933778_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	5.1e-110	56.1
WP_000107431.1\|1934427_1934739_+	hypothetical protein	NA	NA	NA	NA
WP_000377036.1\|1934818_1935514_+	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	28.0
WP_001157313.1\|1935587_1937018_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_7

2837022 : 2977677

158

Salmonella_phage(50.0%)

portal,protease,holin,plate,integrase,tail,terminase,lysis,capsid,tRNA

attL 2837823:2837882|attR 2879689:2879766

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000938182.1\|2837022_2837703_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	9.8e-82	71.0
2837823:2837882	attL	NA	NA	NA	NA
WP_000503667.1\|2838414_2839062_+	hypothetical protein	NA	NA	NA	NA
WP_001670723.1\|2839104_2839302_-	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	1.4e-09	97.0
WP_127913510.1\|2839484_2839730_+	hypothetical protein	NA	NA	NA	NA
WP_000033280.1\|2839927_2840320_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	8.5e-14	37.4
WP_000370530.1\|2840429_2841038_-	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	1.1e-31	44.7
WP_071786695.1\|2841100_2841286_-	hypothetical protein	NA	NA	NA	NA
WP_000421108.1\|2841534_2842053_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	2.0e-47	53.8
WP_001670454.1\|2842067_2843600_-	hypothetical protein	S4TP62	Salmonella_phage	1.4e-128	66.2
WP_000049939.1\|2843599_2844280_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	5.5e-125	96.0
WP_001197089.1\|2844276_2845476_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	5.5e-213	96.7
WP_001270641.1\|2845476_2845830_-	hypothetical protein	A0A0M4R339	Salmonella_phage	3.0e-58	95.7
WP_000301078.1\|2845829_2846582_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	9.7e-91	69.8
WP_000931859.1\|2846700_2847156_+	hypothetical protein	NA	NA	NA	NA
WP_000819157.1\|2847239_2847572_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.7e-23	69.1
WP_000081749.1\|2847568_2848636_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	2.0e-174	91.5
WP_000155111.1\|2848638_2848941_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.2e-53	100.0
WP_000353826.1\|2848940_2849516_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.4e-97	100.0
WP_000990866.1\|2849515_2851525_-	transglycosylase SLT domain-containing protein	A0A0M4REK7	Salmonella_phage	0.0e+00	95.2
WP_000389049.1\|2851702_2852155_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.3e-61	78.7
WP_000535992.1\|2852158_2852602_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	1.0e-55	74.5
WP_001135539.1\|2852614_2853760_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.2e-164	75.3
WP_001670724.1\|2853763_2854327_-	hypothetical protein	A0A0M4R331	Salmonella_phage	2.1e-82	78.7
WP_001121925.1\|2854301_2854691_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	2.1e-68	98.4
WP_000008738.1\|2854677_2855232_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.4e-94	99.5
WP_001125672.1\|2855228_2855636_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.0e-70	96.3
WP_001040693.1\|2855601_2855991_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	4.0e-32	62.0
WP_000627463.1\|2856032_2856974_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	99.7
WP_000128057.1\|2856985_2857483_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
WP_000873181.1\|2857487_2858720_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	3.7e-228	99.3
WP_137911068.1\|2858723_2859470_-\|capsid	minor capsid protein	A0A0M4REK0	Salmonella_phage	3.1e-97	91.2
WP_000113503.1\|2859354_2860824_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	1.3e-280	99.2
WP_001130808.1\|2860823_2862446_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	99.4
WP_001118126.1\|2862448_2863078_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	1.5e-108	98.1
WP_086374239.1\|2863578_2864034_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.3e-53	76.8
WP_000951228.1\|2864351_2864891_-	lysozyme	K7PLY1	Enterobacteria_phage	4.0e-78	74.1
WP_001525456.1\|2864868_2865171_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_000658037.1\|2865373_2865562_-	hypothetical protein	NA	NA	NA	NA
WP_000640103.1\|2865954_2866533_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	2.4e-44	52.0
WP_000717784.1\|2866529_2866823_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	2.1e-33	65.3
WP_000090037.1\|2866819_2867416_-	DUF1367 family protein	H9C173	Pectobacterium_phage	1.5e-81	73.7
WP_000474096.1\|2867484_2867676_-	hypothetical protein	NA	NA	NA	NA
WP_001129735.1\|2867859_2868198_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.7e-50	86.6
WP_000180135.1\|2868197_2868368_-	hypothetical protein	I6S1S6	Salmonella_phage	6.3e-06	87.5
WP_001037052.1\|2868364_2868967_-	adenine methylase	G9L699	Escherichia_phage	1.7e-98	87.3
WP_000918617.1\|2868959_2869208_-	hypothetical protein	NA	NA	NA	NA
WP_000130738.1\|2869211_2869892_-	hypothetical protein	NA	NA	NA	NA
WP_000074839.1\|2869929_2871318_-	DNA helicase	Q76H51	Enterobacteria_phage	1.2e-105	47.1
WP_000063056.1\|2871314_2872295_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	2.3e-44	80.6
WP_001195066.1\|2872297_2872522_-	hypothetical protein	H9C163	Pectobacterium_phage	1.0e-08	44.7
WP_001643782.1\|2872544_2872991_-	hypothetical protein	H9C162	Pectobacterium_phage	5.5e-25	50.4
WP_023972394.1\|2873396_2873852_+	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	4.6e-35	51.7
WP_000387662.1\|2874536_2874860_+	hypothetical protein	NA	NA	NA	NA
WP_001192832.1\|2874867_2875113_+	hypothetical protein	A0A1B1W282	Salmonella_phage	3.5e-13	53.8
WP_000158391.1\|2875142_2877407_+	hypothetical protein	H9C157	Pectobacterium_phage	1.5e-102	34.7
WP_000205292.1\|2877403_2877958_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	1.3e-47	59.3
WP_000916251.1\|2877960_2878143_+	hypothetical protein	NA	NA	NA	NA
WP_000196402.1\|2878355_2878580_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000533596.1\|2878580_2879600_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	1.2e-91	53.5
WP_000374046.1\|2880187_2880847_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
2879689:2879766	attR	NA	NA	NA	NA
WP_000904446.1\|2880933_2881263_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|2881259_2881541_-	acylphosphatase	NA	NA	NA	NA
WP_000548080.1\|2881589_2882369_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000859429.1\|2882394_2882943_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140482.1\|2883157_2884369_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|2884426_2884744_+	heat shock protein HspQ	NA	NA	NA	NA
WP_001537782.1\|2884788_2885202_-	CoA-binding protein	NA	NA	NA	NA
WP_000847732.1\|2885375_2886038_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|2886132_2886591_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420513.1\|2886626_2888681_-	DNA helicase IV	A7KV33	Bacillus_phage	1.1e-19	27.6
WP_001261222.1\|2888804_2889251_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950876.1\|2889269_2891423_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202375.1\|2891409_2892015_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288732.1\|2892231_2892741_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_001670727.1\|2893097_2894150_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|2894221_2894674_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156448.1\|2894859_2896620_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|2896688_2897207_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|2897306_2897474_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|2897729_2898293_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433416.1\|2898289_2899930_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_000333152.1\|2899934_2901188_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053044.1\|2901202_2903110_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_001086485.1\|2903122_2905231_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224072.1\|2905329_2906439_+	YcbX family protein	NA	NA	NA	NA
WP_001670452.1\|2906435_2906978_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291723.1\|2907143_2908154_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_000193770.1\|2908361_2910974_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	4.8e-20	22.8
WP_000497441.1\|2911400_2911592_+	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_001525490.1\|2911862_2912549_+	hypothetical protein	NA	NA	NA	NA
WP_010989011.1\|2912533_2912833_+	hypothetical protein	NA	NA	NA	NA
WP_000334547.1\|2912901_2913528_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_001526469.1\|2914175_2915144_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.1e-195	100.0
WP_000143167.1\|2915619_2916201_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001144679.1\|2916200_2918639_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
WP_000178849.1\|2918692_2918935_-	hypothetical protein	NA	NA	NA	NA
WP_188317969.1\|2918973_2921439_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	7.5e-265	66.6
WP_045723188.1\|2921354_2922323_-	host specificity protein J	A0A2I6TCW5	Escherichia_phage	3.4e-128	73.3
WP_000246065.1\|2922394_2923099_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
WP_000606351.1\|2922996_2923734_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_001152415.1\|2923743_2924439_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000877926.1\|2924528_2925062_+	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_000725267.1\|2925178_2925676_-	Ail/Lom family outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000978296.1\|2925774_2926107_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
WP_010989010.1\|2926103_2929091_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
WP_010989009.1\|2929170_2929500_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_000478859.1\|2929496_2929895_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_000132756.1\|2929940_2930690_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
WP_000196702.1\|2930701_2931103_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
WP_000453194.1\|2931099_2931666_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
WP_000774239.1\|2931646_2931946_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_001107908.1\|2931938_2932262_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
WP_010989008.1\|2932352_2934434_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
WP_001009207.1\|2934357_2935905_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	2.8e-177	64.3
WP_000196190.1\|2935901_2936108_-	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_000989241.1\|2936104_2938243_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
WP_000371784.1\|2938199_2938733_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_001541990.1\|2938940_2939420_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
WP_000984586.1\|2939437_2939890_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_001574216.1\|2939873_2940203_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001141973.1\|2940478_2941165_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
WP_000798705.1\|2941525_2941975_+	hypothetical protein	NA	NA	NA	NA
WP_001534733.1\|2942110_2942236_-	hypothetical protein	NA	NA	NA	NA
WP_000508330.1\|2942409_2942628_-	hypothetical protein	NA	NA	NA	NA
WP_001047631.1\|2942792_2943590_-	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
WP_001617856.1\|2943579_2943726_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001096552.1\|2943722_2944334_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
WP_000929805.1\|2944542_2945145_-	DUF1367 family protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
WP_000807548.1\|2945227_2945449_-	hypothetical protein	NA	NA	NA	NA
WP_001217665.1\|2945560_2945794_-	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
WP_014343823.1\|2946085_2946376_-	hypothetical protein	NA	NA	NA	NA
WP_000065108.1\|2946453_2946765_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
WP_000113629.1\|2946761_2947109_-	DUF977 family protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
WP_000800010.1\|2947119_2947869_-	ATP-binding protein	S4TNF5	Salmonella_phage	3.6e-138	99.6
WP_001574095.1\|2948917_2949292_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000370145.1\|2949257_2949497_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
WP_001038966.1\|2949616_2950027_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
WP_014344008.1\|2950076_2950337_+	hypothetical protein	NA	NA	NA	NA
WP_000917564.1\|2950329_2950488_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
WP_001668146.1\|2950509_2950809_+	hypothetical protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
WP_000017133.1\|2950935_2953821_+	PD-(D/E)XK nuclease-like domain-containing protein	S4TNL0	Salmonella_phage	0.0e+00	97.3
WP_001539618.1\|2953783_2954941_+	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001237031.1\|2954983_2955223_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000065276.1\|2955263_2955512_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262306.1\|2955556_2956849_+	DUF3596 domain-containing protein	S4TSP2	Salmonella_phage	1.0e-252	99.8
WP_000191406.1\|2957043_2958246_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_000893197.1\|2958326_2959760_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000544853.1\|2960005_2961220_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000762343.1\|2961536_2961998_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000117870.1\|2962198_2963599_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000977709.1\|2964205_2965297_+	porin OmpF	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
WP_000462653.1\|2965481_2966672_+	aspartate transaminase	NA	NA	NA	NA
WP_001109471.1\|2966733_2967381_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000357052.1\|2967408_2967957_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_000572746.1\|2970407_2974874_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_000060024.1\|2974873_2975578_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_001288828.1\|2975558_2976881_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_001154027.1\|2976873_2977677_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA

DBSCAN-SWA_8

3010007 : 3101875

Salmonella_phage(59.32%)

portal,protease,plate,head,integrase,tail,terminase,lysis,capsid,tRNA

attL 3068664:3068680|attR 3101950:3101966

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000886697.1\|3010007_3011300_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.6e-95	44.5
WP_000067785.1\|3011558_3012902_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	1.6e-80	40.9
WP_001519746.1\|3012911_3013523_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_001670447.1\|3013665_3017748_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.9e-88	49.5
WP_000228469.1\|3017882_3018377_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537406.1\|3018922_3019891_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	6.5e-63	45.5
WP_001044546.1\|3020004_3021771_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	3.9e-21	24.8
WP_001202252.1\|3021771_3023493_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	6.4e-13	23.5
WP_001241649.1\|3023537_3024242_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001539595.1\|3024242_3024626_+	membrane protein	NA	NA	NA	NA
WP_001040187.1\|3024553_3024772_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000597928.1\|3024862_3025774_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000809969.1\|3025882_3026743_+	pirin family protein	NA	NA	NA	NA
WP_000097893.1\|3026762_3027440_+	hydrolase	NA	NA	NA	NA
WP_001670446.1\|3028028_3028406_+	hypothetical protein	A0A077KET4	Ralstonia_phage	5.9e-20	42.7
WP_001117984.1\|3028567_3028765_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|3028978_3031255_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|3031285_3031606_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|3031929_3032151_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125893.1\|3032280_3034227_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
WP_001201748.1\|3034223_3035342_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.8e-08	38.9
WP_000192846.1\|3035487_3036438_+	VirK/YbjX family protein	NA	NA	NA	NA
WP_000599770.1\|3036434_3038093_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_000491119.1\|3038294_3039194_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_000458785.1\|3039337_3040990_+	hydroxylamine reductase	NA	NA	NA	NA
WP_001670445.1\|3041001_3041970_+	NADH oxidoreductase	NA	NA	NA	NA
WP_000815313.1\|3042127_3043846_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.7e-29	24.4
WP_000566421.1\|3043884_3044886_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_000079015.1\|3044896_3046330_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_000866904.1\|3046425_3047439_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_000645850.1\|3047435_3048266_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	2.3e-08	30.7
WP_001160725.1\|3048262_3048586_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_001270724.1\|3048713_3049229_+	lipoprotein	NA	NA	NA	NA
WP_000027186.1\|3049458_3050187_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	5.1e-28	35.8
WP_000756586.1\|3050204_3050936_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001001677.1\|3050942_3051659_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_000895396.1\|3051658_3052327_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_000737538.1\|3052563_3053295_+	ABC transporter substrate-binding protein ArtJ	NA	NA	NA	NA
WP_000644030.1\|3053512_3055000_-	sulfatase	NA	NA	NA	NA
WP_000655399.1\|3055009_3055330_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_000399323.1\|3055359_3056703_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_001149788.1\|3056985_3058116_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	1.2e-23	25.8
WP_000505788.1\|3058158_3058632_-	YbjO family protein	NA	NA	NA	NA
WP_001061629.1\|3058705_3059551_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_000105453.1\|3059547_3060501_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_001000698.1\|3060510_3061644_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	6.5e-30	34.9
WP_000125764.1\|3061731_3062844_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_000624810.1\|3063192_3063669_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_000684361.1\|3063764_3064667_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	3.5e-34	34.0
WP_000075300.1\|3064724_3065447_-	nitroreductase NfsA	NA	NA	NA	NA
WP_001259137.1\|3065430_3065721_-	YbjC family protein	NA	NA	NA	NA
WP_000495513.1\|3065890_3066154_+	glutaredoxin, GrxA family	A0A2I7SAE2	Vibrio_phage	5.9e-27	70.5
WP_000680850.1\|3066185_3066563_-	inner membrane protein YbjM	NA	NA	NA	NA
WP_001024853.1\|3066833_3068519_+	aspartate:alanine antiporter	NA	NA	NA	NA
3068664:3068680	attL	NA	NA	NA	NA
WP_000972391.1\|3068754_3068973_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_001011797.1\|3069063_3070164_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	1.7e-176	88.0
WP_000980413.1\|3070160_3070646_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.3e-67	80.6
WP_058655992.1\|3070642_3073720_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	62.7
WP_000763311.1\|3073712_3073832_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001281009.1\|3073846_3074149_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
WP_001504081.1\|3074203_3074719_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	4.8e-89	94.7
WP_000046120.1\|3074728_3075901_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.1e-204	90.3
WP_058655991.1\|3076043_3076610_-	recombinase family protein	A0A1S6L009	Salmonella_phage	1.9e-86	84.8
WP_001340317.1\|3077116_3077350_+	hypothetical protein	NA	NA	NA	NA
WP_001032316.1\|3077330_3077741_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	2.2e-20	43.3
WP_001086833.1\|3079257_3079863_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.4e-110	92.0
WP_001552638.1\|3079855_3080764_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.6e-143	90.7
WP_000177581.1\|3080750_3081110_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	2.8e-51	86.6
WP_001552634.1\|3081106_3081685_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.1e-94	87.5
WP_047340712.1\|3081753_3082200_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.3e-61	84.2
WP_001039926.1\|3082192_3082624_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	2.9e-71	93.0
WP_001080918.1\|3082719_3083148_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.4e-46	75.9
WP_058655989.1\|3083144_3083522_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	3.9e-16	40.0
WP_001069905.1\|3083523_3084036_-	lysozyme	E5G6N1	Salmonella_phage	3.1e-88	92.3
WP_000171568.1\|3084016_3084232_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868175.1\|3084235_3084439_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000673530.1\|3084438_3084903_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.9e-76	89.0
WP_000059191.1\|3084998_3085649_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_000742511.1\|3085652_3086711_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.9e-181	93.4
WP_000216238.1\|3086727_3087561_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.2e-123	91.3
WP_058655988.1\|3087703_3089470_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.3
WP_040075594.1\|3089469_3090501_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.8e-170	88.2
WP_149866257.1\|3090552_3090867_-	hypothetical protein	NA	NA	NA	NA
WP_065344884.1\|3090884_3091298_-	hypothetical protein	S5W9H2	Leptospira_phage	2.0e-05	39.1
WP_040075599.1\|3091299_3092118_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|3092445_3092679_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3092689_3092878_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_058655987.1\|3093031_3095446_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.0
WP_001544405.1\|3095442_3096300_-	DNA adenine methylase	E5G6L8	Salmonella_phage	9.5e-159	95.8
WP_000752610.1\|3096296_3096524_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	7.8e-36	98.7
WP_001244224.1\|3096523_3096757_-	DUF2732 family protein	E5G6L6	Salmonella_phage	1.9e-32	97.4
WP_000996717.1\|3096824_3097166_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_000956192.1\|3097283_3097580_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.9e-21	88.5
WP_000460892.1\|3097587_3098097_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.3e-86	98.2
WP_000188448.1\|3098129_3098351_-	hypothetical protein	NA	NA	NA	NA
WP_058655986.1\|3098446_3099043_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.2e-40	43.9
WP_058655985.1\|3099063_3100740_+	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	1.7e-82	66.8
WP_058655984.1\|3100822_3101875_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	2.7e-107	57.3
3101950:3101966	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3193115 : 3229934

Salmonella_phage(45.61%)

portal,protease,holin,head,integrase,tail,terminase,lysis

attL 3192823:3192847|attR 3230000:3230024

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3192823:3192847	attL	NA	NA	NA	NA
WP_024143557.1\|3193115_3194972_-\|tail	tail protein	S4TVJ1	Salmonella_phage	2.3e-274	90.1
WP_001029850.1\|3195256_3197248_-	hypothetical protein	A0A1R3Y5Q1	Salmonella_virus	0.0e+00	96.6
WP_000246943.1\|3197247_3198543_-	phage DNA ejection protein	Q716G3	Shigella_phage	2.1e-181	84.0
WP_000964873.1\|3198552_3199245_-	DNA transfer protein	G5DA80	Enterobacteria_phage	2.7e-111	99.6
WP_000627705.1\|3199247_3199703_-	DUF2824 family protein	I1TEJ3	Salmonella_phage	4.4e-86	98.7
WP_000774929.1\|3199702_3200404_-	hypothetical protein	C6ZR14	Salmonella_phage	4.7e-71	92.3
WP_001122372.1\|3200407_3201826_-	packaged DNA stabilization protein gp10	A0A075B8I2	Enterobacteria_phage	3.9e-274	98.3
WP_001140510.1\|3201835_3202297_-\|head	head DNA stabilization protein	A5VW70	Enterobacteria_phage	7.1e-84	100.0
WP_001362792.1\|3202277_3202466_-	hypothetical protein	A5VW71	Enterobacteria_phage	2.9e-28	100.0
WP_000013269.1\|3202507_3203761_-	hypothetical protein	A0A088CQ56	Enterobacteria_phage	1.0e-233	98.3
WP_000372591.1\|3203779_3204673_-	hypothetical protein	A0A088CPT0	Enterobacteria_phage	2.6e-114	84.2
WP_001535486.1\|3204763_3206962_-\|portal	portal protein	A0A088CQ69	Enterobacteria_phage	0.0e+00	97.3
WP_000200777.1\|3206963_3208379_-\|terminase	PBSX family phage terminase large subunit	A5VW75	Enterobacteria_phage	3.2e-276	99.2
WP_000190002.1\|3208375_3208798_-	hypothetical protein	Q716H4	Shigella_phage	3.6e-74	99.3
WP_000542583.1\|3208821_3209001_-	hypothetical protein	Q9AZ02	Salmonella_phage	2.1e-23	93.2
WP_000807823.1\|3209002_3209245_-	DUF2560 family protein	A0A0M4R322	Salmonella_phage	8.3e-36	98.8
WP_000191867.1\|3209540_3210068_-	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	3.3e-45	54.6
WP_001670813.1\|3210146_3210584_-\|lysis	lysis protein	A0A2I6PIF7	Escherichia_phage	6.5e-71	97.9
WP_001670814.1\|3210672_3211170_-	lysozyme RrrD	I6R0P2	Salmonella_phage	9.9e-92	100.0
WP_000286100.1\|3211147_3211351_-\|holin	phage holin family protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
WP_000512805.1\|3211814_3212333_-	DUF1133 family protein	Q716B8	Shigella_phage	2.2e-94	98.8
WP_001028837.1\|3212323_3212995_-	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	2.0e-127	95.5
WP_001224087.1\|3212991_3213600_-	recombination protein NinG	I6S604	Salmonella_phage	2.9e-93	95.0
WP_000566850.1\|3213574_3213754_-	protein ninF	I6R994	Salmonella_phage	1.1e-27	94.9
WP_000113769.1\|3213750_3213927_-	NinE family protein	Q5G8S3	Enterobacteria_phage	3.0e-27	100.0
WP_000679702.1\|3213893_3214067_-	hypothetical protein	C6ZR56	Salmonella_phage	5.2e-32	100.0
WP_000736889.1\|3214063_3214501_-	recombination protein NinB	A0A192Y6T2	Salmonella_phage	9.4e-78	98.6
WP_000344577.1\|3214725_3214977_-	hypothetical protein	A0A220NQX3	Salmonella_phage	2.9e-23	65.5
WP_000049638.1\|3214988_3215189_-	hypothetical protein	Q716C9	Shigella_phage	4.6e-32	100.0
WP_000796285.1\|3215185_3215512_-	hypothetical protein	Q716D0	Shigella_phage	4.2e-59	99.1
WP_001036029.1\|3215584_3215854_-	hypothetical protein	G9L682	Escherichia_phage	1.9e-44	98.9
WP_000145948.1\|3215850_3216141_-	hypothetical protein	K7PH23	Enterobacteria_phage	2.5e-50	100.0
WP_000171135.1\|3216137_3216983_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	2.1e-110	73.6
WP_000050079.1\|3216985_3217828_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-128	94.2
WP_000220588.1\|3217814_3218459_-	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_001177653.1\|3218493_3218772_-	lambda phage CII family protein	Q8VNP9	Enterobacteria_phage	3.6e-43	100.0
WP_000620665.1\|3218880_3219075_-	hypothetical protein	K7PLQ6	Enterobacteria_phage	1.8e-28	100.0
WP_000428318.1\|3219181_3219898_+	helix-turn-helix domain-containing protein	K7PGR7	Enterobacteria_phage	9.2e-123	100.0
WP_000233126.1\|3219916_3220285_+	hypothetical protein	K7PJJ3	Enterobacteria_phage	1.3e-56	100.0
WP_000219336.1\|3220652_3220958_+	hypothetical protein	A5VW99	Enterobacteria_phage	1.3e-25	92.8
WP_000915090.1\|3220966_3221104_+	hypothetical protein	Q716D9	Shigella_phage	1.3e-22	100.0
WP_000246166.1\|3221228_3221423_+	Restriction inhibitor protein ral	A0A2H4FS18	Salmonella_phage	2.5e-30	100.0
WP_071825053.1\|3221506_3222490_+	hypothetical protein	Q5G8T6	Enterobacteria_phage	8.3e-74	82.6
WP_001670815.1\|3222684_3222858_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	I6R987	Salmonella_phage	8.9e-24	100.0
WP_000156731.1\|3222838_3223027_+	DUF5444 family protein	I6S647	Salmonella_phage	3.7e-31	100.0
WP_000902091.1\|3223016_3223160_+	hypothetical protein	I6S1M5	Salmonella_phage	4.2e-19	100.0
WP_001046987.1\|3223156_3223864_+	recombinase	B8K1D9	Salmonella_phage	6.7e-134	96.2
WP_000168278.1\|3223864_3224323_+	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	2.6e-70	89.0
WP_001016182.1\|3224819_3225368_+	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	2.1e-106	100.0
WP_001111323.1\|3225383_3225677_+	DUF2856 family protein	A0A1V0E5L7	Salmonella_phage	5.5e-50	100.0
WP_001214773.1\|3225687_3225861_+	DUF2737 family protein	A0A2H4FUQ1	Salmonella_phage	2.1e-25	96.5
WP_020924094.1\|3225872_3226397_+	hypothetical protein	Q5G8U6	Enterobacteria_phage	1.6e-39	64.8
WP_000065091.1\|3226393_3226990_+	ead/Ea22-like family protein	A0A2H4FRZ0	Salmonella_phage	8.7e-42	55.2
WP_000161224.1\|3226991_3227210_+	DUF4014 family protein	C6ZR28	Salmonella_phage	7.0e-34	97.2
WP_000208026.1\|3227213_3227447_+	hypothetical protein	A0A1V0E5L6	Salmonella_phage	6.0e-15	91.1
WP_001060559.1\|3227516_3228491_+	hypothetical protein	Q5G8V2	Enterobacteria_phage	5.2e-28	44.0
WP_001556007.1\|3228667_3228886_+	excisionase	A0A1V0E5M4	Salmonella_phage	5.7e-36	100.0
WP_000533680.1\|3228863_3229934_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E5M7	Salmonella_phage	3.0e-154	99.6
3230000:3230024	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4457490 : 4502266

Burkholderia_phage(40.91%)

tail,tRNA,plate,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001182228.1\|4457490_4458489_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_001039337.1\|4458576_4459887_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000416272.1\|4460133_4460649_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001030592.1\|4460748_4460958_-	CsbD family protein	NA	NA	NA	NA
WP_001575282.1\|4460979_4461093_-	hypothetical protein	NA	NA	NA	NA
WP_001128103.1\|4461089_4462415_-	MATE family efflux transporter DinF	NA	NA	NA	NA
WP_000646079.1\|4462593_4463202_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002900.1\|4463310_4463679_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017360.1\|4463849_4466270_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455249.1\|4466368_4467241_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000019230.1\|4467254_4467752_-	chorismate lyase	NA	NA	NA	NA
WP_000782497.1\|4467932_4468850_-	maltose operon protein MalM	NA	NA	NA	NA
WP_000973678.1\|4469013_4470372_-	maltoporin	NA	NA	NA	NA
WP_000179176.1\|4470460_4471570_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000695415.1\|4471931_4473122_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000382575.1\|4473253_4474798_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_001252081.1\|4474812_4475703_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000982749.1\|4475868_4476279_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_000750806.1\|4476421_4478518_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_000977959.1\|4478517_4479255_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_122821798.1\|4479251_4479920_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_001541297.1\|4479953_4480196_-	outer membrane protein	NA	NA	NA	NA
WP_000790036.1\|4480639_4482289_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000136394.1\|4482633_4483983_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000615248.1\|4484113_4484461_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
WP_001226442.1\|4485038_4485326_+\|holin	putative holin	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_001270441.1\|4485328_4485934_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_000777266.1\|4485946_4486261_+	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_000449433.1\|4486420_4486876_+	Gp37 family protein	NA	NA	NA	NA
WP_000875314.1\|4486872_4487070_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000729849.1\|4487059_4488487_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.8e-194	70.9
WP_000907495.1\|4488486_4489011_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003640.1\|4489062_4489380_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185656.1\|4489339_4489468_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001262484.1\|4489564_4491919_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.8e-67	30.8
WP_000271429.1\|4491918_4492872_+\|tail	phage tail protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001269716.1\|4492871_4493081_+\|tail	tail protein X	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000818152.1\|4493068_4494112_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	3.2e-76	45.1
WP_000679396.1\|4494121_4494844_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	2.3e-12	42.0
WP_000593184.1\|4495167_4495530_+	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
WP_000703634.1\|4495526_4496456_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	6.7e-150	83.8
WP_000632052.1\|4496455_4498003_+	hypothetical protein	B9UDL6	Salmonella_phage	1.6e-50	30.4
WP_001093501.1\|4498166_4498526_+	GPW/gp25 family protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000951728.1\|4498516_4499632_+\|plate	baseplate J/gp47 family protein	Q6QI99	Burkholderia_phage	5.3e-101	52.2
WP_000359503.1\|4499624_4500257_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
WP_000368212.1\|4500259_4501741_+\|tail	tail fiber protein	A0A0M3ULF6	Salmonella_phage	1.6e-52	52.7
WP_001177098.1\|4501750_4502266_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.3e-33	40.7

DBSCAN-SWA_11

4621032 : 4686813

Salmonella_phage(40.91%)

portal,protease,plate,head,integrase,tail,terminase,lysis,capsid

attL 4650888:4650934|attR 4681867:4681913

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000208240.1\|4621032_4621563_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_001293360.1\|4621572_4622904_+	HslU--HslV peptidase ATPase subunit	W6AS21	Erwinia_phage	2.4e-44	28.3
WP_000139637.1\|4622970_4623900_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000872918.1\|4623992_4624478_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_000051370.1\|4624699_4624939_-	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000084285.1\|4625337_4626183_+	aquaporin	M1HWZ0	Paramecium_bursaria_Chlorella_virus	2.0e-15	28.6
WP_000136809.1\|4626203_4627712_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001250617.1\|4627823_4628834_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000796293.1\|4628930_4629677_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_000155229.1\|4629782_4630211_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000802242.1\|4630311_4630908_+	YiiQ family protein	NA	NA	NA	NA
WP_001216339.1\|4631020_4631788_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_001088053.1\|4631879_4632644_-	epimerase	NA	NA	NA	NA
WP_001543603.1\|4632653_4632944_-	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase	NA	NA	NA	NA
WP_000774146.1\|4633026_4633902_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
WP_000090737.1\|4633930_4634953_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
WP_000981826.1\|4634981_4635983_-	autoinducer 2 ABC transporter permease LsrD	NA	NA	NA	NA
WP_000911133.1\|4635979_4637023_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
WP_001167248.1\|4637016_4638552_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	6.3e-20	30.0
WP_001283049.1\|4638807_4639767_+	transcriptional regulator LsrR	NA	NA	NA	NA
WP_000113085.1\|4639853_4641446_+	autoinducer-2 kinase	NA	NA	NA	NA
WP_001173080.1\|4641459_4641810_+	cupin domain-containing protein	NA	NA	NA	NA
WP_001519915.1\|4642308_4643031_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000557881.1\|4643093_4644134_-	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA
WP_000646510.1\|4644143_4645103_-	aminoimidazole riboside kinase	NA	NA	NA	NA
WP_000777320.1\|4645113_4646448_-	MFS transporter	NA	NA	NA	NA
WP_000750762.1\|4646710_4647466_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_000758711.1\|4647566_4648556_-	sulfate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000591793.1\|4648759_4649722_-	6-phosphofructokinase	NA	NA	NA	NA
WP_001077320.1\|4649906_4650809_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
4650888:4650934	attL	NA	NA	NA	NA
WP_000933379.1\|4651095_4651512_+	hypothetical protein	S4TTB4	Salmonella_phage	1.8e-33	52.3
WP_000468311.1\|4651546_4651765_-	DNA-binding transcriptional regulator	S4TNZ3	Salmonella_phage	4.7e-38	100.0
WP_000627818.1\|4651842_4653012_-	phage late control D family protein	S4TRX8	Salmonella_phage	1.4e-205	95.6
WP_000978869.1\|4653008_4653494_-\|tail	phage tail protein	S4TUC3	Salmonella_phage	5.9e-81	94.4
WP_000069524.1\|4653505_4655947_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	93.1
WP_085984508.1\|4655939_4656095_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
WP_001029727.1\|4656091_4656427_-\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
WP_001207676.1\|4656489_4657008_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.4e-93	99.4
WP_001279030.1\|4657023_4658211_-\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	2.0e-223	100.0
WP_000874698.1\|4658345_4658915_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.0e-92	86.8
WP_000104695.1\|4658914_4660657_-\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.5e-267	97.1
WP_001000070.1\|4660667_4661198_-\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	1.9e-104	100.0
WP_000246674.1\|4661190_4662099_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.7e-158	98.7
WP_000127150.1\|4662105_4662453_-	GPW/gp25 family protein	A0A0M4RE59	Salmonella_phage	2.1e-56	98.3
WP_001093789.1\|4662449_4663091_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	2.4e-98	85.0
WP_000273577.1\|4663167_4664544_-	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_000997680.1\|4664548_4665016_-	phage virion morphogenesis protein	O80313	Escherichia_phage	9.8e-49	67.8
WP_000277800.1\|4665008_4665476_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	2.2e-56	69.0
WP_000849743.1\|4665583_4665997_-\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	8.4e-36	59.9
WP_000534554.1\|4665993_4666503_-	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
WP_000524754.1\|4666486_4666708_-	hypothetical protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
WP_001100637.1\|4666698_4666902_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
WP_000177982.1\|4666901_4667402_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
WP_000224816.1\|4667499_4668258_-\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	2.7e-80	67.1
WP_001224307.1\|4668261_4669422_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	2.8e-129	62.5
WP_001074705.1\|4669453_4670317_-\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	4.5e-100	64.8
WP_000214048.1\|4670481_4672251_+\|terminase	terminase ATPase subunit family protein	Q9T0R3	Escherichia_phage	3.2e-286	81.0
WP_000039235.1\|4672250_4673288_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	7.7e-163	78.7
WP_000551923.1\|4673808_4674000_-	hypothetical protein	S4TRZ0	Salmonella_phage	1.1e-27	100.0
WP_000042036.1\|4673998_4674430_+	hypothetical protein	S4TUD6	Salmonella_phage	1.1e-75	100.0
WP_000680929.1\|4674563_4675604_+	Fic family protein	S4TP71	Salmonella_phage	6.3e-197	100.0
WP_000037667.1\|4675600_4675798_-	hypothetical protein	NA	NA	NA	NA
WP_000257582.1\|4675976_4678253_-	replication endonuclease	S4TTC1	Salmonella_phage	0.0e+00	88.0
WP_000027647.1\|4678242_4678518_-	DUF5405 family protein	M1TAP2	Escherichia_phage	7.0e-31	72.5
WP_001113578.1\|4678514_4678739_-	TraR/DksA C4-type zinc finger protein	A0A0F7LDG9	Escherichia_phage	2.0e-23	75.7
WP_000557712.1\|4679040_4679265_-	DUF2732 family protein	Q7Y4C2	Escherichia_virus	3.4e-23	78.4
WP_001670778.1\|4679328_4679829_-	hypothetical protein	M1SV55	Escherichia_phage	1.8e-85	91.0
WP_001583792.1\|4679998_4680271_-	hypothetical protein	Q1JS36	Enterobacteria_phage	1.0e-42	87.8
WP_001099751.1\|4680407_4680701_+	helix-turn-helix transcriptional regulator	Q1JS45	Enterobacteria_phage	1.6e-36	75.3
WP_000985251.1\|4680770_4681751_+\|integrase	tyrosine-type recombinase/integrase	S4TP66	Salmonella_phage	1.5e-179	96.0
WP_020924309.1\|4681935_4682436_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
4681867:4681913	attR	NA	NA	NA	NA
WP_001033731.1\|4682586_4683285_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_000580402.1\|4683281_4684655_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
WP_000338672.1\|4684702_4684906_-	hypothetical protein	NA	NA	NA	NA
WP_000133442.1\|4685026_4685422_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_000559230.1\|4685433_4686123_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_000122632.1\|4686192_4686813_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP016012

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection