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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP018205 Staphylococcus aureus subsp. aureus strain HG001 isolate RN1 chromosome, complete genome 10 crisprs cas3,DEDDh,DinG,csa3,WYL 10 3 10 0

Results visualization

1. NZ_CP018205
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018205_1 375412-375512 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018205_2 604868-604960 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018205_3 668128-668226 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018205_4 810357-810438 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018205_5 859212-859494 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018205_6 992896-992983 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018205_7 1775278-1775488 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018205_8 1975677-1975755 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018205_9 2210491-2210580 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018205_10 2334515-2334708 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP018205_4 4.1|810381|34|NZ_CP018205|CRISPRCasFinder 810381-810414 34 NZ_CP018205.1 1285549-1285582 0 1.0
NZ_CP018205_4 4.1|810381|34|NZ_CP018205|CRISPRCasFinder 810381-810414 34 NZ_CP018205.1 1373991-1374024 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 115357-115376 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 258555-258574 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 336930-336949 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 761636-761655 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 761691-761710 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 767296-767315 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 767354-767373 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 767412-767431 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 810435-810454 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 878893-878912 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 1002879-1002898 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 1285450-1285469 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 1374104-1374123 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 1596499-1596518 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 1775202-1775221 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 1977107-1977126 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 2526359-2526378 0 1.0
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 2777305-2777324 0 1.0
NZ_CP018205_10 10.2|2334594|36|NZ_CP018205|CRT 2334594-2334629 36 NZ_CP018205.1 1077341-1077376 0 1.0
NZ_CP018205_5 5.1|859242|26|NZ_CP018205|CRT 859242-859267 26 NZ_CP018205.1 767081-767106 1 0.962
NZ_CP018205_5 5.1|859242|26|NZ_CP018205|CRT 859242-859267 26 NZ_CP018205.1 859186-859211 1 0.962
NZ_CP018205_5 5.3|859356|26|NZ_CP018205|CRT 859356-859381 26 NZ_CP018205.1 767137-767162 1 0.962
NZ_CP018205_5 5.3|859356|26|NZ_CP018205|CRT 859356-859381 26 NZ_CP018205.1 767193-767218 1 0.962
NZ_CP018205_7 7.1|1775316|21|NZ_CP018205|CRT 1775316-1775336 21 NZ_CP018205.1 1775257-1775277 1 0.952
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 258609-258628 1 0.95
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 774502-774521 1 0.95
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 1077345-1077364 1 0.95
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 1334776-1334795 1 0.95
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 1630465-1630484 1 0.95
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 1986456-1986475 1 0.95
NZ_CP018205_7 7.3|1775433|18|NZ_CP018205|CRT 1775433-1775450 18 NZ_CP018205.1 1775260-1775277 1 0.944
NZ_CP018205_8 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder 1975700-1975732 33 NZ_CP018205.1 767117-767149 1 0.97
NZ_CP018205_8 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder 1975700-1975732 33 NZ_CP018205.1 767173-767205 1 0.97
NZ_CP018205_8 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder 1975700-1975732 33 NZ_CP018205.1 1285504-1285536 1 0.97
NZ_CP018205_8 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder 1975700-1975732 33 NZ_CP018205.1 1596548-1596580 1 0.97
NZ_CP018205_8 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder 1975700-1975732 33 NZ_CP018205.1 2611930-2611962 1 0.97
NZ_CP018205_10 10.2|2334594|36|NZ_CP018205|CRT 2334594-2334629 36 NZ_CP018205.1 1775198-1775233 1 0.972
NZ_CP018205_5 5.1|859242|26|NZ_CP018205|CRT 859242-859267 26 NZ_CP018205.1 730501-730526 2 0.923
NZ_CP018205_5 5.1|859242|26|NZ_CP018205|CRT 859242-859267 26 NZ_CP018205.1 1077383-1077408 2 0.923
NZ_CP018205_5 5.1|859242|26|NZ_CP018205|CRT 859242-859267 26 NZ_CP018205.1 2777205-2777230 2 0.923
NZ_CP018205_5 5.1|859242|26|NZ_CP018205|CRT 859242-859267 26 NZ_CP018205.1 2777261-2777286 2 0.923
NZ_CP018205_5 5.3|859356|26|NZ_CP018205|CRT 859356-859381 26 NZ_CP018205.1 336799-336824 2 0.923
NZ_CP018205_7 7.2|1775375|20|NZ_CP018205|CRT 1775375-1775394 20 NZ_CP018205.1 735101-735120 2 0.9
NZ_CP018205_8 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder 1975700-1975732 33 NZ_CP018205.1 1374037-1374069 2 0.939
NZ_CP018205_10 10.1|2334538|33|NZ_CP018205|CRT 2334538-2334570 33 NZ_CP018205.1 767117-767149 2 0.939
NZ_CP018205_10 10.1|2334538|33|NZ_CP018205|CRT 2334538-2334570 33 NZ_CP018205.1 767173-767205 2 0.939
NZ_CP018205_10 10.1|2334538|33|NZ_CP018205|CRT 2334538-2334570 33 NZ_CP018205.1 1285504-1285536 2 0.939
NZ_CP018205_10 10.1|2334538|33|NZ_CP018205|CRT 2334538-2334570 33 NZ_CP018205.1 1374037-1374069 2 0.939
NZ_CP018205_10 10.1|2334538|33|NZ_CP018205|CRT 2334538-2334570 33 NZ_CP018205.1 2611930-2611962 2 0.939
NZ_CP018205_10 10.2|2334594|36|NZ_CP018205|CRT 2334594-2334629 36 NZ_CP018205.1 1596487-1596522 2 0.944
NZ_CP018205_10 10.2|2334594|36|NZ_CP018205|CRT 2334594-2334629 36 NZ_CP018205.1 1986444-1986479 2 0.944
NZ_CP018205_10 10.3|2334653|33|NZ_CP018205|CRT 2334653-2334685 33 NZ_CP018205.1 767061-767093 2 0.939
NZ_CP018205_10 10.3|2334653|33|NZ_CP018205|CRT 2334653-2334685 33 NZ_CP018205.1 767117-767149 2 0.939
NZ_CP018205_10 10.3|2334653|33|NZ_CP018205|CRT 2334653-2334685 33 NZ_CP018205.1 767173-767205 2 0.939
NZ_CP018205_10 10.3|2334653|33|NZ_CP018205|CRT 2334653-2334685 33 NZ_CP018205.1 1285504-1285536 2 0.939
NZ_CP018205_10 10.3|2334653|33|NZ_CP018205|CRT 2334653-2334685 33 NZ_CP018205.1 2611930-2611962 2 0.939

1. spacer 4.1|810381|34|NZ_CP018205|CRISPRCasFinder matches to position: 1285549-1285582, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 4.1|810381|34|NZ_CP018205|CRISPRCasFinder matches to position: 1373991-1374024, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 115357-115376, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

4. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 258555-258574, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

5. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 336930-336949, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

6. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 761636-761655, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

7. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 761691-761710, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

8. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 767296-767315, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

9. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 767354-767373, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

10. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 767412-767431, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

11. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 810435-810454, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

12. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 878893-878912, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

13. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 1002879-1002898, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

14. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 1285450-1285469, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

15. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 1374104-1374123, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

16. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 1596499-1596518, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

17. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 1775202-1775221, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

18. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 1977107-1977126, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

19. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 2526359-2526378, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

20. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 2777305-2777324, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaagaaattct	Protospacer
********************

21. spacer 10.2|2334594|36|NZ_CP018205|CRT matches to position: 1077341-1077376, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

22. spacer 5.1|859242|26|NZ_CP018205|CRT matches to position: 767081-767106, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*****************.********

23. spacer 5.1|859242|26|NZ_CP018205|CRT matches to position: 859186-859211, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

24. spacer 5.3|859356|26|NZ_CP018205|CRT matches to position: 767137-767162, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

25. spacer 5.3|859356|26|NZ_CP018205|CRT matches to position: 767193-767218, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

26. spacer 7.1|1775316|21|NZ_CP018205|CRT matches to position: 1775257-1775277, mismatch: 1, identity: 0.952

agctggccaatagtcagcttt	CRISPR spacer
agctggccaatagttagcttt	Protospacer
**************.******

27. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 258609-258628, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaaattcgaaaagaaattct	Protospacer
*** ****************

28. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 774502-774521, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaatgaaattct	Protospacer
*********** ********

29. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 1077345-1077364, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcaaaaagaaattct	Protospacer
*******.************

30. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 1334776-1334795, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gattttcgaaaagaaattct	Protospacer
** *****************

31. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 1630465-1630484, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgtaaagaaattct	Protospacer
******** ***********

32. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 1986456-1986475, mismatch: 1, identity: 0.95

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcgaaaggaaattct	Protospacer
***********.********

33. spacer 7.3|1775433|18|NZ_CP018205|CRT matches to position: 1775260-1775277, mismatch: 1, identity: 0.944

tggccaatagtcagcttt	CRISPR spacer
tggccaatagttagcttt	Protospacer
***********.******

34. spacer 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder matches to position: 767117-767149, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

35. spacer 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder matches to position: 767173-767205, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

36. spacer 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder matches to position: 1285504-1285536, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

37. spacer 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder matches to position: 1596548-1596580, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattatagtaagctgacttttcgtcagcttctg	Protospacer
****** **************************

38. spacer 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder matches to position: 2611930-2611962, mismatch: 1, identity: 0.97

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
******.**************************

39. spacer 10.2|2334594|36|NZ_CP018205|CRT matches to position: 1775198-1775233, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

40. spacer 5.1|859242|26|NZ_CP018205|CRT matches to position: 730501-730526, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

41. spacer 5.1|859242|26|NZ_CP018205|CRT matches to position: 1077383-1077408, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

42. spacer 5.1|859242|26|NZ_CP018205|CRT matches to position: 2777205-2777230, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

43. spacer 5.1|859242|26|NZ_CP018205|CRT matches to position: 2777261-2777286, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

44. spacer 5.3|859356|26|NZ_CP018205|CRT matches to position: 336799-336824, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

45. spacer 7.2|1775375|20|NZ_CP018205|CRT matches to position: 735101-735120, mismatch: 2, identity: 0.9

gaatttcgaaaagaaattct	CRISPR spacer
gaatttcaaaaaggaattct	Protospacer
*******.*****.******

46. spacer 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder matches to position: 1374037-1374069, mismatch: 2, identity: 0.939

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
******.******************* ******

47. spacer 10.1|2334538|33|NZ_CP018205|CRT matches to position: 767117-767149, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

48. spacer 10.1|2334538|33|NZ_CP018205|CRT matches to position: 767173-767205, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

49. spacer 10.1|2334538|33|NZ_CP018205|CRT matches to position: 1285504-1285536, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

50. spacer 10.1|2334538|33|NZ_CP018205|CRT matches to position: 1374037-1374069, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

51. spacer 10.1|2334538|33|NZ_CP018205|CRT matches to position: 2611930-2611962, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

52. spacer 10.2|2334594|36|NZ_CP018205|CRT matches to position: 1596487-1596522, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

53. spacer 10.2|2334594|36|NZ_CP018205|CRT matches to position: 1986444-1986479, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

54. spacer 10.3|2334653|33|NZ_CP018205|CRT matches to position: 767061-767093, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgccagcttctg	Protospacer
*********************.*.*********

55. spacer 10.3|2334653|33|NZ_CP018205|CRT matches to position: 767117-767149, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

56. spacer 10.3|2334653|33|NZ_CP018205|CRT matches to position: 767173-767205, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

57. spacer 10.3|2334653|33|NZ_CP018205|CRT matches to position: 1285504-1285536, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

58. spacer 10.3|2334653|33|NZ_CP018205|CRT matches to position: 2611930-2611962, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP018205_5 5.4|859412|53|NZ_CP018205|CRT 859412-859464 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
NZ_CP018205_5 5.3|859356|26|NZ_CP018205|CRT 859356-859381 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP018205_8 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder 1975700-1975732 33 NC_021536 Synechococcus phage S-IOM18 genomic sequence 159745-159777 10 0.697

1. spacer 5.4|859412|53|NZ_CP018205|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************  

2. spacer 5.3|859356|26|NZ_CP018205|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

3. spacer 8.1|1975700|33|NZ_CP018205|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cattatcgtaagctgacttttcgtcagcttctg	CRISPR spacer
ttttatcgtaaggtgagttttcgtcaagcacct	Protospacer
. ********** *** *********. . *. 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 699192 : 707012 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 718984 : 733715 14 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 904347 : 958133 53 Streptococcus_phage(33.33%) tRNA,protease,bacteriocin NA
DBSCAN-SWA_4 978120 : 986593 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 1425105 : 1512985 108 Staphylococcus_phage(56.41%) protease,plate,tail,head,capsid,portal,terminase,holin,tRNA,integrase attL 1461346:1461370|attR 1507378:1507402
DBSCAN-SWA_6 1568109 : 1576421 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1645559 : 1654602 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_8 1787611 : 1861863 75 Staphylococcus_phage(93.22%) transposase,tRNA,protease NA
DBSCAN-SWA_9 1890385 : 1965725 93 Staphylococcus_phage(85.92%) plate,tail,head,capsid,portal,terminase,holin,transposase,tRNA,integrase attL 1917330:1917344|attR 1966067:1966081
DBSCAN-SWA_10 2001134 : 2088450 113 Staphylococcus_phage(91.25%) protease,portal,tail,head,capsid,terminase,holin,integrase attL 2064912:2064928|attR 2091106:2091122
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage