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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010121 Escherichia coli strain C4 chromosome, complete genome 6 crisprs csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,RT 0 11 8 0

Results visualization

1. NZ_CP010121
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010121_1 1051633-1051783 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010121_2 1346488-1346821 Unclear I-E
5 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010121_3 1372445-1372961 TypeI-E I-E
8 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010121_4 2568342-2568465 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010121_5 4406541-4406673 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010121_6 4536286-4536450 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010121_2 2.2|1346578|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1346578-1346609 32 NZ_CP030922 Escherichia coli strain KL53 plasmid pKL53-S, complete sequence 33462-33493 0 1.0
NZ_CP010121_2 2.2|1346578|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1346578-1346609 32 NZ_CP042584 Escherichia coli strain LD91-1 plasmid pLD91-1-76kb, complete sequence 25190-25221 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP038506 Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence 11835-11866 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP019283 Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence 42147-42178 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 CP042641 Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence 36520-36551 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP034821 Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence 1557-1588 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP027443 Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence 9506-9537 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP027575 Escherichia coli strain 2013C-4081 plasmid unnamed2 94756-94787 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP027223 Escherichia coli strain 2015C-3101 plasmid unnamed2 65534-65565 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP030188 Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence 61916-61947 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP027590 Escherichia coli strain 2014C-3011 plasmid unnamed2 64165-64196 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP039862 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence 20286-20317 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP033632 Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence 119284-119315 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_AP018798 Escherichia coli strain E2855 plasmid pE2855-2, complete sequence 85099-85130 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 CP012494 Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence 46688-46719 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 CP027320 Escherichia coli strain 2014C-3084 plasmid unnamed1 42116-42147 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NC_013370 Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence 87237-87268 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP026475 Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence 81853-81884 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 MN510445 Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence 70500-70531 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 MN510447 Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence 47861-47892 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP012491 Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence 62997-63028 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 MH422554 Escherichia phage P1, complete genome 87194-87225 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NC_050152 Enterobacteria phage P7, complete genome 93995-94026 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 MH445380 Escherichia virus P1 isolate transconjugant 2(L-II), complete genome 58645-58676 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NC_031129 Salmonella phage SJ46, complete genome 77363-77394 0 1.0
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 MH445381 Escherichia virus P1, complete genome 56870-56901 0 1.0
NZ_CP010121_2 2.3|1346639|32|NZ_CP010121|CRISPRCasFinder,CRT 1346639-1346670 32 NZ_CP030922 Escherichia coli strain KL53 plasmid pKL53-S, complete sequence 42343-42374 1 0.969
NZ_CP010121_2 2.3|1346639|32|NZ_CP010121|CRISPRCasFinder,CRT 1346639-1346670 32 NZ_CP042584 Escherichia coli strain LD91-1 plasmid pLD91-1-76kb, complete sequence 34070-34101 1 0.969
NZ_CP010121_5 5.1|4406558|42|NZ_CP010121|PILER-CR 4406558-4406599 42 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141085-141126 1 0.976
NZ_CP010121_5 5.2|4406617|40|NZ_CP010121|PILER-CR 4406617-4406656 40 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141028-141067 1 0.975
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_KP453775 Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence 17440-17471 2 0.938
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP017632 Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence 122310-122341 2 0.938
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP030285 Escherichia coli strain E308 plasmid pLKSZ04, complete sequence 6029-6060 2 0.938
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 NZ_CP036204 Escherichia coli strain L725 plasmid punnamed2, complete sequence 15121-15152 2 0.938
NZ_CP010121_3 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372901-1372932 32 MN510446 Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence 131402-131433 2 0.938
NZ_CP010121_4 4.1|2568385|38|NZ_CP010121|CRISPRCasFinder 2568385-2568422 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP010121_3 3.3|1372596|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372596-1372627 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1089179-1089210 7 0.781
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NC_016586 Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence 249639-249670 7 0.781
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NZ_CP036488 Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence 318089-318120 7 0.781
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NZ_CP032297 Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence 246347-246378 7 0.781
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NC_017060 Rahnella aquatilis HX2 plasmid PRA1, complete sequence 408332-408363 7 0.781
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NC_015062 Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence 411179-411210 7 0.781
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NZ_CP034838 Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence 393790-393821 7 0.781
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NZ_CP034839 Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence 393790-393821 7 0.781
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NZ_CP034837 Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence 348603-348634 7 0.781
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NC_014120 Paraburkholderia sp. CCGE1002 plasmid pBC201, complete sequence 438007-438038 7 0.781
NZ_CP010121_3 3.7|1372840|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372840-1372871 32 NC_012586 Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence 953792-953823 8 0.75
NZ_CP010121_3 3.4|1372657|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372657-1372688 32 NZ_CP017753 Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence 259133-259164 9 0.719
NZ_CP010121_3 3.5|1372718|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372718-1372749 32 NC_011371 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG204, complete sequence 97835-97866 9 0.719
NZ_CP010121_3 3.5|1372718|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372718-1372749 32 NZ_CP035002 Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence 92653-92684 9 0.719
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NZ_CP020952 Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence 219322-219353 9 0.719
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NC_010997 Rhizobium etli CIAT 652 plasmid pC, complete sequence 829144-829175 9 0.719
NZ_CP010121_3 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT 1372779-1372810 32 NZ_CP033227 Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence 366825-366856 9 0.719

1. spacer 2.2|1346578|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030922 (Escherichia coli strain KL53 plasmid pKL53-S, complete sequence) position: , mismatch: 0, identity: 1.0

gatctggggcgaggatatgaaaaactcacccg	CRISPR spacer
gatctggggcgaggatatgaaaaactcacccg	Protospacer
********************************

2. spacer 2.2|1346578|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042584 (Escherichia coli strain LD91-1 plasmid pLD91-1-76kb, complete sequence) position: , mismatch: 0, identity: 1.0

gatctggggcgaggatatgaaaaactcacccg	CRISPR spacer
gatctggggcgaggatatgaaaaactcacccg	Protospacer
********************************

3. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

4. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

5. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

6. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

7. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

8. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

9. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

10. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

11. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

12. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

13. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

14. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

15. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

16. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

17. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

18. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

19. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

20. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

21. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

22. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

23. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

24. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

25. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

26. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

27. spacer 2.3|1346639|32|NZ_CP010121|CRISPRCasFinder,CRT matches to NZ_CP030922 (Escherichia coli strain KL53 plasmid pKL53-S, complete sequence) position: , mismatch: 1, identity: 0.969

agaacgtcaggaatcaaaaaacaaagtgcatc	CRISPR spacer
agaacgtcaggaatcaaaaaacaaagtgcttc	Protospacer
***************************** **

28. spacer 2.3|1346639|32|NZ_CP010121|CRISPRCasFinder,CRT matches to NZ_CP042584 (Escherichia coli strain LD91-1 plasmid pLD91-1-76kb, complete sequence) position: , mismatch: 1, identity: 0.969

agaacgtcaggaatcaaaaaacaaagtgcatc	CRISPR spacer
agaacgtcaggaatcaaaaaacaaagtgcttc	Protospacer
***************************** **

29. spacer 5.1|4406558|42|NZ_CP010121|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagtcc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
****************************************.*

30. spacer 5.2|4406617|40|NZ_CP010121|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagcaaaaagaaattttcaatattgctttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********** *****************************

31. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

32. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

33. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

34. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

35. spacer 3.8|1372901|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacgttatgaaccgacattcatgt	Protospacer
************ * *****************

36. spacer 4.1|2568385|38|NZ_CP010121|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

37. spacer 3.3|1372596|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

agtaacgacgaaaaaatacaggcacgggccag	CRISPR spacer
accaacgacgaaaaaacgcaggcacgggtgac	Protospacer
* .*************..**********. * 

38. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
ggcagcgcgaaatgcacgccgacgcctgtgct	Protospacer
************.**********.* .  ** 

39. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036488 (Rahnella aquatilis strain MEM40 plasmid pMEM40-1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
gtcagcgggaaacgcccgccgacacttttgcc	Protospacer
* ***** ******* ********* .* ** 

40. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
gtcagcgggaaacgcccgccgacacttttgcc	Protospacer
* ***** ******* ********* .* ** 

41. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NC_017060 (Rahnella aquatilis HX2 plasmid PRA1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
gtcagcgggaaacgcccgccgacacttttgcc	Protospacer
* ***** ******* ********* .* ** 

42. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NC_015062 (Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
gtcagcgggaaacgcccgccgacacttttgcc	Protospacer
* ***** ******* ********* .* ** 

43. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034838 (Rahnella aquatilis strain KM12 plasmid pKM12v1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
gtcagcgggaaacgcccgccgacacttttgcc	Protospacer
* ***** ******* ********* .* ** 

44. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034839 (Rahnella aquatilis strain KM25 plasmid pKM12v2, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
gtcagcgggaaacgcccgccgacacttttgcc	Protospacer
* ***** ******* ********* .* ** 

45. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
gtcagcgggaaacgcccgccgacacttttgcc	Protospacer
* ***** ******* ********* .* ** 

46. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NC_014120 (Paraburkholderia sp. CCGE1002 plasmid pBC201, complete sequence) position: , mismatch: 7, identity: 0.781

-ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
atgcagt-cgaaacgctcgccgacaagctggac	Protospacer
  ****. ******** ******** *****  

47. spacer 3.7|1372840|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 8, identity: 0.75

cagcgt-tatgcgacgggtgaagacgccgacga	CRISPR spacer
-ggtgcgcgtgcgacgggtgatgacgccgacgg	Protospacer
 .*.*. ..************ **********.

48. spacer 3.4|1372657|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

atccccgcaggtatcgcgcagctatcgatcga	CRISPR spacer
atgccctcaggtatcgcgcagctacaagcccg	Protospacer
** *** *****************. ...* .

49. spacer 3.5|1372718|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NC_011371 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG204, complete sequence) position: , mismatch: 9, identity: 0.719

gggtataaaataatatcgaacgcagcagcaac	CRISPR spacer
tggatggccattatctcgaacgcagcagcaac	Protospacer
 **   .  ** ** *****************

50. spacer 3.5|1372718|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035002 (Rhizobium acidisoli strain FH23 plasmid pRapFH23d, complete sequence) position: , mismatch: 9, identity: 0.719

gggtataaaataatatcgaacgcagcagcaac	CRISPR spacer
tggatggccattatctcgaacgcagcagcaac	Protospacer
 **   .  ** ** *****************

51. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 9, identity: 0.719

ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
tctacagggaaacgcccgccgacacgccggcg	Protospacer
  .*  * ******* ***********.***.

52. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 9, identity: 0.719

ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
tctacagggaaacgcccgccgacacgccggcg	Protospacer
  .*  * ******* ***********.***.

53. spacer 3.6|1372779|32|NZ_CP010121|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033227 (Sphingobium yanoikuyae strain SJTF8 plasmid pF1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcagcgcgaaacgcacgccgacacgctggca	CRISPR spacer
gatttcgcgagacgcacgcccacacgctacga	Protospacer
*..  *****.********* *******.  *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1752962 : 1835583 85 Shigella_phage(49.09%) protease,integrase,portal,tRNA,head,holin,terminase,plate,tail,capsid attL 1764795:1764816|attR 1803808:1803829
DBSCAN-SWA_2 2056234 : 2064544 9 Enterobacteria_phage(83.33%) NA NA
DBSCAN-SWA_3 2188638 : 2225098 58 Enterobacteria_phage(52.63%) integrase,portal,lysis,coat,holin,terminase attL 2180290:2180304|attR 2219316:2219330
DBSCAN-SWA_4 3058094 : 3110787 66 Enterobacteria_phage(50.94%) integrase,portal,lysis,tRNA,head,terminase,holin,tail,capsid attL 3080516:3080530|attR 3110685:3110699
DBSCAN-SWA_5 3340560 : 3431824 93 Salmonella_phage(60.71%) protease,integrase,portal,lysis,tRNA,head,terminase,plate,tail,capsid attL 3333521:3333536|attR 3434395:3434410
DBSCAN-SWA_6 3513017 : 3552647 57 Shigella_phage(58.49%) protease,integrase,portal,lysis,head,terminase,plate,tail,capsid attL 3512660:3512674|attR 3552721:3552735
DBSCAN-SWA_7 4106348 : 4194387 60 Escherichia_phage(23.08%) transposase,plate NA
DBSCAN-SWA_8 4453258 : 4533152 90 Enterobacteria_phage(37.5%) protease,integrase,portal,lysis,tRNA,terminase,holin,tail attL 4483299:4483314|attR 4536368:4536383
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage