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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010151 Escherichia coli strain D8 chromosome, complete genome 5 crisprs cas3,DEDDh,DinG,cas14j,WYL,RT,PD-DExK 0 3 7 0

Results visualization

1. NZ_CP010151
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010151_1 737121-737234 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010151_2 1462690-1462813 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010151_3 2187677-2187768 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010151_4 2825523-2825658 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010151_5 3445223-3445362 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010151_3 3.1|2187703|40|NZ_CP010151|CRISPRCasFinder 2187703-2187742 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
NZ_CP010151_2 2.1|1462733|38|NZ_CP010151|CRISPRCasFinder 1462733-1462770 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 12113-12164 10 0.808
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 MT230402 Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence 272-323 10 0.808
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31252-31303 10 0.808
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4115-4166 11 0.788
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4114-4165 11 0.788
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4114-4165 11 0.788
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4114-4165 11 0.788
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 152-203 11 0.788
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 208982-209033 12 0.769
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 44-95 12 0.769
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 219476-219527 12 0.769
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 43-94 12 0.769
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 18332-18383 12 0.769
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 210310-210361 12 0.769
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 43-94 12 0.769
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 191265-191316 12 0.769
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 43-94 12 0.769
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7393-7444 12 0.769
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84217-84268 12 0.769
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 3373-3424 13 0.75
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 3372-3423 13 0.75
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 15000-15051 13 0.75
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 3372-3423 13 0.75
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 3372-3423 13 0.75
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_AP023209 Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence 70-121 14 0.731
NZ_CP010151_5 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder 3445267-3445318 52 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 30159-30210 14 0.731

1. spacer 3.1|2187703|40|NZ_CP010151|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

2. spacer 2.1|1462733|38|NZ_CP010151|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 10, identity: 0.808

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
acgggcgactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccga	Protospacer
.*.   .*********************** *****************  * 

4. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 10, identity: 0.808

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggtaacg-gtttgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
 *.* .* ..*.*************************************  * 

5. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 10, identity: 0.808

--gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
tggcaacgg--ctgtaggcctgataagacgcgacagcgtcgcatcaggcattga	Protospacer
  *** .*.  ..*************************************  * 

6. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************    

7. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************    

8. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************    

9. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.788

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggcac-aagtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctg	Protospacer
 **** .*..*.****** ************ *****************    

10. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 11, identity: 0.788

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
gctcgggtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaa	Protospacer
** * *. ** ******************* ****************   . 

11. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************    

12. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  . 

13. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************    

14. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  . 

15. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  . 

16. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************    

17. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  . 

18. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

----gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
aaaaacagtgg----gtaggcctgataagacgcgtcagcgtcgcatcaggcatctg	Protospacer
    .** **.    ******************* *****************    

19. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.769

-gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
cgtac-agatttgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
 *.** ..*.*.****** ************ *****************  . 

20. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 12, identity: 0.769

---gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
agtgcagt---tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccg	Protospacer
   *** *   .*.****** ************ *****************    

21. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 12, identity: 0.769

---gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
agtgcagt---tttgtaggcatgataagacgcgccagcgtcgcatcaggcatccg	Protospacer
   *** *   .*.****** ************ *****************    

22. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************    

23. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************    

24. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************    

25. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************    

26. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ttcgcgggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctg	Protospacer
 .  .*..********* ************ *****************    

27. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 14, identity: 0.731

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
ggttcaggtccgtaggcatgataagacgcgtcagcgtcgcatcaggcatcgg	Protospacer
*  .......******* ************ *****************  * 

28. spacer 5.1|3445267|52|NZ_CP010151|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 14, identity: 0.731

gcactgaactcgtaggcctgataagacgcgacagcgtcgcatcaggcaaggc	CRISPR spacer
gggtgcagattgtaggcatgataagacgcgtcagcgtcgcatcaggcatcag	Protospacer
* ..  *. *.****** ************ *****************  . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 269584 : 280073 9 Escherichia_phage(62.5%) NA NA
DBSCAN-SWA_2 966190 : 972500 6 Enterobacteria_phage(50.0%) NA NA
DBSCAN-SWA_3 1904427 : 1949686 68 Enterobacteria_phage(52.38%) tail,portal,integrase,lysis,terminase,capsid,protease,head attL 1906621:1906634|attR 1950023:1950036
DBSCAN-SWA_4 2989431 : 3081260 89 uncultured_Caudovirales_phage(40.0%) transposase,bacteriocin,tail,portal,integrase,terminase,capsid,tRNA,protease,head attL 3045079:3045097|attR 3059609:3059627
DBSCAN-SWA_5 3522503 : 3582449 58 Vibrio_phage(16.67%) integrase,transposase,tRNA,protease attL 3553590:3553606|attR 3588625:3588641
DBSCAN-SWA_6 4305181 : 4318246 18 Morganella_phage(30.0%) integrase attL 4294986:4294998|attR 4318638:4318650
DBSCAN-SWA_7 4699511 : 4737152 37 uncultured_Caudovirales_phage(60.0%) tail,portal,integrase,terminase,capsid,tRNA,protease,head attL 4722873:4722932|attR 4738158:4738237
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage