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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010119 Escherichia coli strain C3 chromosome, complete genome 5 crisprs WYL,DEDDh,cas3,csa3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DinG,c2c9_V-U4 0 4 18 0
NZ_CP010120 Escherichia coli strain C3 plasmid A, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP010119
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010119_1 797363-797478 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010119_2 2313854-2313971 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010119_3 2817893-2817982 Unclear I-E
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010119_4 2843701-2844095 TypeI-E I-E
6 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010119_5 3347465-3347588 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010119_5 5.1|3347508|38|NZ_CP010119|CRISPRCasFinder 3347508-3347545 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP010119_4 4.2|2843791|32|NZ_CP010119|PILER-CR,CRISPRCasFinder,CRT 2843791-2843822 32 NC_028662 Mycobacterium phage Phlei, complete genome 44891-44922 5 0.844
NZ_CP010119_4 4.6|2844035|32|NZ_CP010119|PILER-CR,CRISPRCasFinder,CRT 2844035-2844066 32 NZ_CP050442 Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence 41503-41534 6 0.812
NZ_CP010119_4 4.1|2843730|32|NZ_CP010119|PILER-CR,CRISPRCasFinder,CRT 2843730-2843761 32 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 903982-904013 10 0.688
NZ_CP010119_4 4.1|2843730|32|NZ_CP010119|PILER-CR,CRISPRCasFinder,CRT 2843730-2843761 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1467285-1467316 11 0.656

1. spacer 5.1|3347508|38|NZ_CP010119|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

2. spacer 4.2|2843791|32|NZ_CP010119|PILER-CR,CRISPRCasFinder,CRT matches to NC_028662 (Mycobacterium phage Phlei, complete genome) position: , mismatch: 5, identity: 0.844

acgaccaaatgatctacgcgtattgccacctc-	CRISPR spacer
acgaccaaacgctctacgcgta-tgcgagctct	Protospacer
*********.* ********** *** * *** 

3. spacer 4.6|2844035|32|NZ_CP010119|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050442 (Tolypothrix sp. PCC 7910 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

cggctatggaatttatggagaagtttggtttt	CRISPR spacer
ctcctatggaatttatgcagaagtttagtaat	Protospacer
*  ************** ********.**  *

4. spacer 4.1|2843730|32|NZ_CP010119|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

gtccatggcctgacgaagctcgtaatattttg	CRISPR spacer
gcgcatgtcctgacgaagctcgtgatgcaaga	Protospacer
*. **** ***************.**..   .

5. spacer 4.1|2843730|32|NZ_CP010119|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

gtccatggcctgacgaagctcgtaatattttg	CRISPR spacer
ccgcatgtcctgacgaagctcgtgatgcaaga	Protospacer
 . **** ***************.**..   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 114 : 17879 33 Enterobacteria_phage(51.72%) transposase,integrase,protease attL 9029:9041|attR 18451:18463
DBSCAN-SWA_2 234303 : 305501 67 Enterobacteria_phage(54.9%) tRNA,transposase,tail,portal,terminase,protease,head,integrase,capsid,lysis attL 242784:242830|attR 295295:295341
DBSCAN-SWA_3 1085353 : 1142936 55 Vibrio_phage(15.38%) tRNA,transposase,integrase,protease attL 1110734:1110748|attR 1142238:1142252
DBSCAN-SWA_4 2860450 : 2867590 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_5 2945533 : 2984643 50 Enterobacteria_phage(46.94%) tail,portal,terminase,protease,integrase,lysis attL 2938653:2938668|attR 2958634:2958649
DBSCAN-SWA_6 3037669 : 3074119 49 Enterobacteria_phage(80.95%) tail,portal,holin,terminase,head,plate,integrase,capsid attL 3036604:3036663|attR 3074226:3074349
DBSCAN-SWA_7 3255511 : 3301220 57 Enterobacteria_phage(84.09%) tRNA,tail,portal,holin,terminase,head,plate,integrase,capsid attL 3262847:3262867|attR 3298794:3298814
DBSCAN-SWA_8 3376792 : 3540004 174 Enterobacteria_phage(30.77%) tRNA,transposase,tail,portal,terminase,protease,head,integrase,capsid,lysis attL 3419928:3419949|attR 3434970:3434991
DBSCAN-SWA_9 3786198 : 3864745 88 Shigella_phage(49.09%) tRNA,transposase,tail,portal,holin,terminase,protease,head,plate,integrase,capsid attL 3783718:3783734|attR 3834915:3834931
DBSCAN-SWA_10 4064345 : 4073787 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_11 4086298 : 4150242 72 Escherichia_phage(46.67%) tRNA,tail,portal,holin,terminase,head,integrase,plate,capsid,lysis attL 4113549:4113576|attR 4145158:4145185
DBSCAN-SWA_12 4282060 : 4333568 59 Enterobacteria_phage(37.78%) tail,portal,holin,terminase,head,integrase,capsid attL 4281508:4281523|attR 4312618:4312633
DBSCAN-SWA_13 4578336 : 4635366 77 Enterobacteria_phage(38.24%) transposase,tail,portal,holin,terminase,protease,head,integrase,capsid,lysis attL 4568214:4568231|attR 4643575:4643592
DBSCAN-SWA_14 4764311 : 4826810 75 Escherichia_phage(27.78%) tRNA,transposase,tail,holin,terminase,head,integrase,capsid attL 4759405:4759419|attR 4765886:4765900
DBSCAN-SWA_15 5031993 : 5086162 71 Escherichia_phage(79.37%) tRNA,transposase,tail,holin,terminase,plate,integrase attL 5031627:5031642|attR 5066338:5066353
DBSCAN-SWA_16 5288491 : 5303796 12 Enterobacteria_phage(66.67%) tail NA
DBSCAN-SWA_17 5306833 : 5333316 45 Enterobacteria_phage(44.83%) transposase,tail,portal,terminase,protease,lysis NA
DBSCAN-SWA_18 5342104 : 5348166 7 Cronobacter_phage(33.33%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage