CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP010140	Escherichia coli strain D3 chromosome, complete genome	7 crisprs	RT,DEDDh,DinG,cas3,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	17	11
NZ_CP010141	Escherichia coli strain D3 plasmid A, complete sequence	0 crisprs	csa3	0	1
NZ_CP010142	Escherichia coli strain D3 plasmid B, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010140_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010140_1

286277-286424

Orphan

Consensus_repeat	Method
CGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010140_1

>merge|NZ_CP010140|1|286277-286424|CRISPRCasFinder
CGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>NZ_CP010140|1|1|286277-286424|CRISPRCasFinder
CGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTGCG
CGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010140.1\|WP_001318460.1\|297168_298188_-\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP010140.1\|WP_000500689.1\|275484_276198_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_CP010140.1\|WP_001309159.1\|292119_293118_-\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NZ_CP010140.1\|WP_000416382.1\|282808_285664_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP010140.1\|WP_000786399.1\|285663_286107_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP010140.1\|WP_000397144.1\|286460_287972_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP010140.1\|WP_023568197.1\|295353_296385_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NZ_CP010140.1\|WP_000002953.1\|280398_280815_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP010140.1\|WP_001059412.1\|280860_281364_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP010140.1\|WP_001128335.1\|293184_294504_-\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NZ_CP010140.1\|WP_000896738.1\|296601_297165_+\|gluconokinase	unknown	unknown	gnl\|CDD\|182097
NZ_CP010140.1\|WP_001295681.1\|289338_290421_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP010140.1\|WP_016245206.1\|290539_292042_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP010140.1\|WP_000584114.1\|288238_289339_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP010140.1\|WP_064774521.1\|277677_279177_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010140.1\|WP_000079655.1\|281556_282753_+\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
NZ_CP010140.1\|WP_000998695.1\|294565_295330_-\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
NZ_CP010140.1\|WP_001326836.1\|277006_277459_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
NZ_CP010140.1\|WP_069354155.1\|279232_280237_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP010140.1\|WP_000256681.1\|276268_276862_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228

Protein	Function_ID	Function_description	E-value
NZ_CP010140.1\|WP_001318460.1\|297168_298188_-\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.21683e-169
NZ_CP010140.1\|WP_000500689.1\|275484_276198_-\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	1.67397e-148
NZ_CP010140.1\|WP_000416382.1\|282808_285664_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP010140.1\|WP_000786399.1\|285663_286107_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NZ_CP010140.1\|WP_000397144.1\|286460_287972_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP010140.1\|WP_023568197.1\|295353_296385_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_CP010140.1\|WP_000002953.1\|280398_280815_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP010140.1\|WP_001059412.1\|280860_281364_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.73712e-19
NZ_CP010140.1\|WP_001128335.1\|293184_294504_-\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP010140.1\|WP_000896738.1\|296601_297165_+\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
NZ_CP010140.1\|WP_001295681.1\|289338_290421_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP010140.1\|WP_016245206.1\|290539_292042_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP010140.1\|WP_000584114.1\|288238_289339_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP010140.1\|WP_001309159.1\|292119_293118_-\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.4437e-109
NZ_CP010140.1\|WP_000079655.1\|281556_282753_+\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	4.28094e-150
NZ_CP010140.1\|WP_000998695.1\|294565_295330_-\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
NZ_CP010140.1\|WP_001326836.1\|277006_277459_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.64234e-69
NZ_CP010140.1\|WP_069354155.1\|279232_280237_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP010140.1\|WP_000256681.1\|276268_276862_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.07846e-09

>NZ_CP010140.1|WP_000786399.1|285663_286107_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP010140.1|WP_000416382.1|282808_285664_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP010140.1|WP_000079655.1|281556_282753_+|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLVGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSLKGFWWVTFFLPILMAIGMGAVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLARISRGIMPSLPFL
>NZ_CP010140.1|WP_001059412.1|280860_281364_-|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTQQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEFDGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>NZ_CP010140.1|WP_000002953.1|280398_280815_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP010140.1|WP_069354155.1|279232_280237_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLSDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>NZ_CP010140.1|WP_064774521.1|277677_279177_+|hypothetical-protein
MNNFARNAEGQDNTRNILDPKTFLEFLVKIFTLGYVDFSNRSNEAGRNMMAHIESSSYIKNNDGSEIMKFVMNNPEGERADLSKVEIEITLSTITTMGTRQGHTAIIFQQPDGSTNRYEGKSFERKDESSLHLITNKVLACYQREANKEVALLLNNHQLNWKDAIDYNELLEKPLASTLEKIKKEHLLLMPHVCDDTIPYLLGEGGILEEINGLKTLHDTKIDSGTEGNDEINNIKINLSNILIDSLDDAKINLEKVIDSMLETFFKLPYINDVKILEWCFNQSMQYSDDTTKIKHARSVIDHIDFNCDQSKIAETLFFNLNKEPYKNSPELQELIWEKLVVYVNDFNLSNQEKSRLILRLFDDVKLVFDKVPLSILVNDIFLKDFFMKQPDFAKWYFYQLLKSYEGEQMYLNELGYVYGDEEKTKEIVNKLPGYVVKIFEEKIDNELKIRTRMMEILRDEQINIYEYINEKQLEKLNPQGNLRIAIEKFGWNNKPITA
>NZ_CP010140.1|WP_001326836.1|277006_277459_+|YhcH/YjgK/YiaL-family-protein
MIIGNIHNLQPWLPQELRQAIEHIKAHVTPETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLRGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP010140.1|WP_000256681.1|276268_276862_+|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKVGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE
>NZ_CP010140.1|WP_000500689.1|275484_276198_-|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAEHLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNSDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSLMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>NZ_CP010140.1|WP_000397144.1|286460_287972_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP010140.1|WP_000584114.1|288238_289339_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP010140.1|WP_001295681.1|289338_290421_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP010140.1|WP_016245206.1|290539_292042_-|DUF853-domain-containing-protein
MSDPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLARLKNIDVNDWQPHANPVVVWDIFGEKGHSVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRIDANGKGVINILSAEKLYQMPKLYAASLLWMISELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRKR
>NZ_CP010140.1|WP_001309159.1|292119_293118_-|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NZ_CP010140.1|WP_001128335.1|293184_294504_-|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NZ_CP010140.1|WP_000998695.1|294565_295330_-|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>NZ_CP010140.1|WP_023568197.1|295353_296385_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTSVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NZ_CP010140.1|WP_000896738.1|296601_297165_+|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NZ_CP010140.1|WP_001318460.1|297168_298188_-|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADY

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Crispr_ID: NZ_CP010140_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010140_2

584942-585057

Orphan

Consensus_repeat	Method
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010140_2

>merge|NZ_CP010140|2|584942-585057|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAAACACAGCGCGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTT

>NZ_CP010140|2|2|584942-585057|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	GAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAAACACAGCGCGTAGGCCA
GATAAGACGCGTCAGCGTCGCATCAGGCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010140.1\|WP_000035637.1\|581755_584107_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP010140.1\|WP_000916291.1\|590470_591169_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP010140.1\|WP_001200579.1\|577081_577897_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP010140.1\|WP_000241271.1\|572144_573134_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP010140.1\|WP_000235700.1\|591152_592763_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP010140.1\|WP_001065381.1\|571326_572148_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP010140.1\|WP_000888642.1\|584181_584877_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP010140.1\|WP_001248770.1\|595629_595761_+\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203
NZ_CP010140.1\|WP_000746150.1\|574472_576827_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP010140.1\|WP_001297366.1\|593885_595541_-\|DNA-binding-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP010140.1\|WP_000610901.1\|570946_571324_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP010140.1\|WP_000151734.1\|585076_586579_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP010140.1\|WP_001295536.1\|592738_593722_-\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP010140.1\|WP_000800453.1\|573133_574420_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP010140.1\|WP_000951786.1\|586589_588290_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP010140.1\|WP_001117011.1\|578684_581591_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP010140.1\|WP_000525176.1\|578013_578673_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP010140.1\|WP_001300811.1\|588628_589507_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP010140.1\|WP_000637846.1\|595862_597041_+\|sugar-efflux-transporter-SetA	unknown	unknown	gnl\|CDD\|129977
NZ_CP010140.1\|WP_001148402.1\|589592_590357_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659

Protein	Function_ID	Function_description	E-value
NZ_CP010140.1\|WP_000035637.1\|581755_584107_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP010140.1\|WP_000916291.1\|590470_591169_-\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	1.49788e-164
NZ_CP010140.1\|WP_001200579.1\|577081_577897_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.49529e-169
NZ_CP010140.1\|WP_000241271.1\|572144_573134_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP010140.1\|WP_000235700.1\|591152_592763_-\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP010140.1\|WP_001065381.1\|571326_572148_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.76119e-148
NZ_CP010140.1\|WP_000888642.1\|584181_584877_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	1.31794e-177
NZ_CP010140.1\|WP_001248770.1\|595629_595761_+\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00206924
NZ_CP010140.1\|WP_000746150.1\|574472_576827_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP010140.1\|WP_001297366.1\|593885_595541_-\|DNA-binding-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP010140.1\|WP_000610901.1\|570946_571324_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	3.63315e-76
NZ_CP010140.1\|WP_000151734.1\|585076_586579_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP010140.1\|WP_001295536.1\|592738_593722_-\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP010140.1\|WP_000800453.1\|573133_574420_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP010140.1\|WP_000951786.1\|586589_588290_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP010140.1\|WP_001117011.1\|578684_581591_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP010140.1\|WP_000525176.1\|578013_578673_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	1.37214e-159
NZ_CP010140.1\|WP_001300811.1\|588628_589507_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP010140.1\|WP_000637846.1\|595862_597041_+\|sugar-efflux-transporter-SetA	gnl\|CDD\|129977	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP010140.1\|WP_001148402.1\|589592_590357_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	2.3759e-49

>NZ_CP010140.1|WP_000888642.1|584181_584877_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRLVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSVMTADDMVVVSIATGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP010140.1|WP_000035637.1|581755_584107_-|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDIRNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYIRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP010140.1|WP_001117011.1|578684_581591_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP010140.1|WP_000525176.1|578013_578673_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP010140.1|WP_001200579.1|577081_577897_+|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQTGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP010140.1|WP_000746150.1|574472_576827_-|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNSL
>NZ_CP010140.1|WP_000800453.1|573133_574420_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATADIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NZ_CP010140.1|WP_000241271.1|572144_573134_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRTYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAVENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPLLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP010140.1|WP_001065381.1|571326_572148_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES
>NZ_CP010140.1|WP_000610901.1|570946_571324_-|Co2+/Mg2+-efflux-protein-ApaG
MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQLLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMIDENGVPFSIDIPVFRLAVPTLIH
>NZ_CP010140.1|WP_000151734.1|585076_586579_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP010140.1|WP_000951786.1|586589_588290_-|ribulokinase
MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDTTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPCSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>NZ_CP010140.1|WP_001300811.1|588628_589507_+|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP010140.1|WP_001148402.1|589592_590357_+|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGG
>NZ_CP010140.1|WP_000916291.1|590470_591169_-|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTNELLSGKASASALLGITG
>NZ_CP010140.1|WP_000235700.1|591152_592763_-|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWVAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFTVIEKLPGRNVKTD
>NZ_CP010140.1|WP_001295536.1|592738_593722_-|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NZ_CP010140.1|WP_001297366.1|593885_595541_-|DNA-binding-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNTTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTIKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP
>NZ_CP010140.1|WP_001248770.1|595629_595761_+|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES
>NZ_CP010140.1|WP_000637846.1|595862_597041_+|sugar-efflux-transporter-SetA
MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREVGAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRHYLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPLAFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLPSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPDKLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSWGHFAVYWVIAVISVVALFLTAKVKDV

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Crispr_ID: NZ_CP010140_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010140_3

794784-794937

Orphan

Consensus_repeat	Method
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010140_3

>merge|NZ_CP010140|3|794784-794937|CRISPRCasFinder
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCGGTTATGCGCAGATGCCTGATGCGACGCTGACGCGTCTTATCATGCCTACAAACCTGTGCTGGATCGGTAGGCCGGATAAGGCG

>NZ_CP010140|3|3|794784-794937|CRISPRCasFinder
CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	TTTACGCCGCATCCGGCGGTTATGCGCAGATGCCTGATGCGACGCTGA
CGCGTCTTATCATGCCTACAAACCTGTGCTGGATCGGTAGGCCGGATAAGGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010140.1\|WP_001118055.1\|786644_787415_-\|2-oxoglutaramate-amidase	unknown	unknown	gnl\|CDD\|182461
NZ_CP010140.1\|WP_000284050.1\|790768_791347_+\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_CP010140.1\|WP_000189539.1\|802313_803558_+\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_CP010140.1\|WP_000009291.1\|793322_794081_+\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP010140.1\|WP_000174677.1\|803615_804017_+\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_CP010140.1\|WP_069354110.1\|800045_801503_-\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_CP010140.1\|WP_000006256.1\|794256_794754_+\|REP-associated-tyrosine-transposase-RayT	unknown	unknown	gnl\|CDD\|224854
NZ_CP010140.1\|WP_000749881.1\|804055_805111_-\|phosphoporin-PhoE	unknown	unknown	gnl\|CDD\|182275
NZ_CP010140.1\|WP_001226155.1\|797611_798667_+\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_CP010140.1\|WP_073545257.1\|780491_784745_+\|RHS-repeat-protein	unknown	unknown	gnl\|CDD\|225750
NZ_CP010140.1\|WP_069354111.1\|795071_796811_-\|flagellar-type-III-secretion-system-protein-FlhA	unknown	unknown	gnl\|CDD\|224217
NZ_CP010140.1\|WP_000207589.1\|796755_797541_+\|putative-lateral-flagellar-export/assembly-protein-LafU	unknown	unknown	gnl\|CDD\|235860
NZ_CP010140.1\|WP_001291992.1\|801763_802222_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_CP010140.1\|WP_000978828.1\|784756_785206_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010140.1\|WP_001225679.1\|792290_793031_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP010140.1\|WP_000532698.1\|787568_788042_+\|C-lysozyme-inhibitor	unknown	unknown	gnl\|CDD\|182187
NZ_CP010140.1\|WP_000973093.1\|788084_790529_-\|acyl-CoA-dehydrogenase-FadE	unknown	unknown	gnl\|CDD\|236528
NZ_CP010140.1\|WP_001295202.1\|799422_799689_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|181972
NZ_CP010140.1\|WP_001059874.1\|798663_799116_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_CP010140.1\|WP_000333380.1\|791552_792320_+\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525

Protein	Function_ID	Function_description	E-value
NZ_CP010140.1\|WP_001118055.1\|786644_787415_-\|2-oxoglutaramate-amidase	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0
NZ_CP010140.1\|WP_000284050.1\|790768_791347_+\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	1.61173e-142
NZ_CP010140.1\|WP_000189539.1\|802313_803558_+\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_CP010140.1\|WP_000009291.1\|793322_794081_+\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	3.3314e-41
NZ_CP010140.1\|WP_000174677.1\|803615_804017_+\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.11584e-87
NZ_CP010140.1\|WP_069354110.1\|800045_801503_-\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_CP010140.1\|WP_000006256.1\|794256_794754_+\|REP-associated-tyrosine-transposase-RayT	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.32036e-43
NZ_CP010140.1\|WP_001226155.1\|797611_798667_+\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_CP010140.1\|WP_073545257.1\|780491_784745_+\|RHS-repeat-protein	gnl\|CDD\|225750	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane].	6.21174e-133
NZ_CP010140.1\|WP_069354111.1\|795071_796811_-\|flagellar-type-III-secretion-system-protein-FlhA	gnl\|CDD\|224217	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP010140.1\|WP_000207589.1\|796755_797541_+\|putative-lateral-flagellar-export/assembly-protein-LafU	gnl\|CDD\|235860	PRK06778, PRK06778, hypothetical protein; Validated.	5.17999e-173
NZ_CP010140.1\|WP_001291992.1\|801763_802222_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	5.05624e-113
NZ_CP010140.1\|WP_000749881.1\|804055_805111_-\|phosphoporin-PhoE	gnl\|CDD\|182275	PRK10159, PRK10159, phosphoporin PhoE.	0
NZ_CP010140.1\|WP_001225679.1\|792290_793031_-\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.07529e-116
NZ_CP010140.1\|WP_000532698.1\|787568_788042_+\|C-lysozyme-inhibitor	gnl\|CDD\|182187	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional.	9.39999e-93
NZ_CP010140.1\|WP_000973093.1\|788084_790529_-\|acyl-CoA-dehydrogenase-FadE	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NZ_CP010140.1\|WP_001295202.1\|799422_799689_+\|hypothetical-protein	gnl\|CDD\|181972	PRK09588, PRK09588, hypothetical protein; Reviewed.	1.93527e-42
NZ_CP010140.1\|WP_001059874.1\|798663_799116_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	4.77997e-103
NZ_CP010140.1\|WP_000333380.1\|791552_792320_+\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	8.29603e-146

>NZ_CP010140.1|WP_000006256.1|794256_794754_+|REP-associated-tyrosine-transposase-RayT
MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRHAIIKVKRDRPFEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDVTDINAGERIIL
>NZ_CP010140.1|WP_000009291.1|793322_794081_+|C40-family-peptidase
MSFMSSFLLGRFLHPGVFSLCVLLPLFASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNKILEAKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGENIRVSRLAEPFWQDHFLGARRILTEETIL
>NZ_CP010140.1|WP_001225679.1|792290_793031_-|murein-L,D-transpeptidase
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
>NZ_CP010140.1|WP_000333380.1|791552_792320_+|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV
>NZ_CP010140.1|WP_000284050.1|790768_791347_+|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK
>NZ_CP010140.1|WP_000973093.1|788084_790529_-|acyl-CoA-dehydrogenase-FadE
MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLCSINVDDFDPEELATKPVKLPEKVRKVEAA
>NZ_CP010140.1|WP_000532698.1|787568_788042_+|C-lysozyme-inhibitor
MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK
>NZ_CP010140.1|WP_001118055.1|786644_787415_-|2-oxoglutaramate-amidase
MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQNDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAIYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMVALREYREKFPAWQDADEFRLR
>NZ_CP010140.1|WP_000978828.1|784756_785206_+|hypothetical-protein
MMKYLMVLLSLFSGSVLGMGRVNELCGIDSVKTIEIINLPSYVTTLVPLSKEGLNEIYRYKVVVNEISDLYAGKIIDLLQMKYFRKEKYNNIRWGVSIISKGNNKCEIYFDAFGECGSVNGINVCFEKNEMIGWIKKEIPLLSQKIGGL
>NZ_CP010140.1|WP_073545257.1|780491_784745_+|RHS-repeat-protein
MGGKPAARQGDMTRKGLDIVQGSAGVLIGAPTGVACSVCPGGITYANPVNPLLGAKVLPGETDLALPGPLPFILSRAYSSYRTRTPAPVGVFGPGWKAPFDIRLQIRDEGLILNDSGGRSIHFEPLFPGEISYSRSESLWLARGGVAAQHSSQPLSALWQVLPEDVRLSPHVYLATNSLQGPWWILSWPERVPGADEVLPPPPPAYRVLTRVVDGFGRTLAFHRAAKGDVAGAVTGVTDGAGRRFHLALTTQAQRAEAFRKQRASSLSSPASPRSVSSSQVFPDTLPAGTGYGTDNGIRLEAVWLTHDPAYPDEQPTAPLARYTYTAGGELRAVYDRSGTQVRGFTYDAEHAGRMVAHHYAGRPESCYRYDDTGRVTEQVNPEGLDYRFEYGESRVIITDSLNRREVLYTEGEGGLKRVVKKEHADGSITRSEYDEAGRLKAQTDAAGRRTEYSLHMASGAVTAVTGPDGRTVRYGYNSQRQVTSVTYPDGLRSSREYDEKGRLTAETSRSGETTRYSYDDPASELPTGIQDATGSTKQMAWSRYGQLLAFTDCSGYTTRYEYDRYGQQIAVHREEGISTYSSYNPRGQLVSQKDAQGREIRYEYSAAGDLTATISPDGKRSTIEYDKRGRPVSVTEGGLTRSMGYDAAGRITVLTNENGSQSTFRYDPVDRLTEQRGFDGRTQRYQYDLTGKLTQSEDEGLITLWHYDASDRITRRTVNGEPAEQWQYDDHGWLTEISHLSEGHRVAVHYGYDDKGRLTGERQTVENPETGEMLWEHETGHAYSEQGLATRQEPDGLPPVEWLTYGSGYLAGMKLGGTPLVEYTRDRLHRETARSFGGAGSTAGYEQATAYTLTGQLQSRHLNLPQLDCDYTWNDNGQLVRISGPQECREYRYSGTGRLTGVHTTAANLDIDIPYATDPAGNRLPDPELHPDSTLTAWPDNRIAEDAHYVYRYDEYGRLAEKTDRIPEGVIRMHDERTHHYHYDSQHRLVFYTRIQHGEPQVESRYLYDPLGRRTGKRVWRRERDLTGWMSLSRKPEETWYGWDGDRLTTVQTQQTRIQTVYQPGSFTPLLRIETENGEQAKARHRSLAEVLQEDTGVTLPAELAVMLGRLERELRQGSVSEESQQWLAQCGLTAEQMAAQLEAEYIPERKLHLYHCDHRGLPLALISPEGETAWQGEYDEWGNLLGEESAQHLQQSLRLPGQQYDEESGLYYNRNRYYDPLQGRYITQDPIGLRGEWNLYKYPLNPVRFIDSLGLKFHVNGDPSDFNQAVEYLKQDSQMKETIDFLSSSEETINIEYIEGTNVRFNSNNMAIYWNSRASLFCSTELNSKSQSPALGLGHEFAHAQYYLLDKENFMALLSRTDKKYENKEEARVITIIESRAAKTLGECTRGAHSGLPFYRVDGPLQTMKITGTPE
>NZ_CP010140.1|WP_069354111.1|795071_796811_-|flagellar-type-III-secretion-system-protein-FlhA
MLSRSDLLTLLTINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRISDNGDITHDVRHQLLASPSVLCTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSAVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM
>NZ_CP010140.1|WP_000207589.1|796755_797541_+|putative-lateral-flagellar-export/assembly-protein-LafU
MTTIKLIVNSVSKSERESIIAALHGQSIFSGGGLSPLNKISPSHPPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEMEIVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLDNKIIITGHTDAMAYKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRIEIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRMR
>NZ_CP010140.1|WP_001226155.1|797611_798667_+|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELHLTASAGVAPVKFLAKIASDMNKPNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVILLKRFGKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGLHVTLLDPQMERQLVLGL
>NZ_CP010140.1|WP_001059874.1|798663_799116_+|GNAT-family-N-acetyltransferase
MNNIQIRNYQPGDFQQLCAIFIRAVMMTASQHYSPQQIAAWAQIDESRWKEKLAKSQVRVAVINAQPVGFISRIERHIDMLFVDPEYTRRGVASALLKPLIKSESELTVDASITAKPFFERYGFQIVKQQHVECRGAWFTNFYMRYKPQH
>NZ_CP010140.1|WP_001295202.1|799422_799689_+|hypothetical-protein
MEWYMGKYIRPLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVGMPDLHPGRGYPIGAAFFSVGRFYPARRRGNGAGNRNGPLL
>NZ_CP010140.1|WP_069354110.1|800045_801503_-|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKGFHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWLQADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGGEIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVGALKSLVNTYQDILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIKSVGHYWTLLTELLKEIPAK
>NZ_CP010140.1|WP_001291992.1|801763_802222_+|xanthine-phosphoribosyltransferase
MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDNYVVDIPQDTWIEQPWDMGVVFVPPISGR
>NZ_CP010140.1|WP_000189539.1|802313_803558_+|esterase-FrsA
MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTIPHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWATQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEAAQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYFAPRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGANVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDDALRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFNPVYRNFDKGLQEITGWIEKRLC
>NZ_CP010140.1|WP_000174677.1|803615_804017_+|sigma-factor-binding-protein-Crl
MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNVKPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLREFHEKLRELLTTLNLKLEPADDFRDEPVKLTA
>NZ_CP010140.1|WP_000749881.1|804055_805111_-|phosphoporin-PhoE
MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYMSDNDSKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGLKYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAVGMTYQF

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Crispr_ID: NZ_CP010140_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010140_4

2798053-2798187

Orphan

Consensus_repeat	Method
GGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010140_4

>merge|NZ_CP010140|4|2798053-2798187|CRISPRCasFinder
GGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACAAAACCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACG

>NZ_CP010140|4|4|2798053-2798187|CRISPRCasFinder
GGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACG	CTGCCGCGTCTTATCAGGCCTACAAAACCGAACCGTAGGTC
GGATAAGGCGTTCACGCCGCATCCGACAAACAGCGCCTGATGCGACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010140.1\|WP_000699721.1\|2799627_2800851_-\|colanic-acid-biosynthesis-fucosyltransferase-WcaI	unknown	unknown	gnl\|CDD\|188522
NZ_CP010140.1\|WP_001363022.1\|2790548_2791769_-\|colanic-acid-biosynthesis-glycosyltransferase-WcaL	unknown	unknown	gnl\|CDD\|188520
NZ_CP010140.1\|WP_000043652.1\|2801329_2802295_-\|GDP-L-fucose-synthase	unknown	unknown	gnl\|CDD\|187550
NZ_CP010140.1\|WP_001363008.1\|2786865_2787759_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalF	unknown	unknown	gnl\|CDD\|182252
NZ_CP010140.1\|WP_000479826.1\|2800847_2801327_-\|GDP-mannose-mannosyl-hydrolase	unknown	unknown	gnl\|CDD\|237966
NZ_CP010140.1\|WP_000927058.1\|2804008_2804755_-\|colanic-acid-biosynthesis-glycosyltransferase-WcaE	unknown	unknown	gnl\|CDD\|182218
NZ_CP010140.1\|WP_001363019.1\|2789143_2790538_-\|colanic-acid-biosynthesis-protein-WcaM	unknown	unknown	gnl\|CDD\|182253
NZ_CP010140.1\|WP_000079291.1\|2798188_2799625_-\|mannose-1-phosphate-guanyltransferase	unknown	unknown	gnl\|CDD\|185357
NZ_CP010140.1\|WP_000107816.1\|2804765_2805983_-\|putative-colanic-acid-polymerase-WcaD	unknown	unknown	gnl\|CDD\|188525
NZ_CP010140.1\|WP_001581219.1\|2784502_2785519_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340837
NZ_CP010140.1\|WP_000999466.1\|2787990_2788986_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187549
NZ_CP010140.1\|WP_001023946.1\|2805957_2807175_-\|colanic-acid-biosynthesis-glycosyltransferase-WcaC	unknown	unknown	gnl\|CDD\|274919
NZ_CP010140.1\|WP_000183124.1\|2795089_2796484_-\|undecaprenyl-phosphate-glucose-phosphotransferase	unknown	unknown	gnl\|CDD\|182254
NZ_CP010140.1\|WP_001363013.1\|2793609_2795088_-\|M-antigen-undecaprenyl-disphosphate-flippase	unknown	unknown	gnl\|CDD\|236697
NZ_CP010140.1\|WP_000888729.1\|2807171_2807660_-\|colanic-acid-biosynthesis-acetyltransferase-WcaB	unknown	unknown	gnl\|CDD\|182295
NZ_CP010140.1\|WP_001456262.1\|2802297_2803419_-\|GDP-mannose-4,6-dehydratase	unknown	unknown	gnl\|CDD\|224014
NZ_CP010140.1\|WP_001153547.1\|2803444_2803993_-\|colanic-acid-biosynthesis-acetyltransferase-WcaF	unknown	unknown	gnl\|CDD\|188523
NZ_CP010140.1\|WP_069354234.1\|2785537_2786557_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
NZ_CP010140.1\|WP_001363021.1\|2796538_2797909_-\|phosphomannomutase-CpsG	unknown	unknown	gnl\|CDD\|185312
NZ_CP010140.1\|WP_001363014.1\|2791765_2793046_-\|colanic-acid-biosynthesis-pyruvyl-transferase-WcaK	unknown	unknown	gnl\|CDD\|188521

Protein	Function_ID	Function_description	E-value
NZ_CP010140.1\|WP_000699721.1\|2799627_2800851_-\|colanic-acid-biosynthesis-fucosyltransferase-WcaI	gnl\|CDD\|188522	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI. This gene is one of the glycosyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species.	0
NZ_CP010140.1\|WP_001363022.1\|2790548_2791769_-\|colanic-acid-biosynthesis-glycosyltransferase-WcaL	gnl\|CDD\|188520	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL. This gene is one of the glycosyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species.	0
NZ_CP010140.1\|WP_000043652.1\|2801329_2802295_-\|GDP-L-fucose-synthase	gnl\|CDD\|187550	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs. GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NZ_CP010140.1\|WP_001363008.1\|2786865_2787759_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalF	gnl\|CDD\|182252	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF.	0
NZ_CP010140.1\|WP_000479826.1\|2800847_2801327_-\|GDP-mannose-mannosyl-hydrolase	gnl\|CDD\|237966	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase.	2.91436e-117
NZ_CP010140.1\|WP_000927058.1\|2804008_2804755_-\|colanic-acid-biosynthesis-glycosyltransferase-WcaE	gnl\|CDD\|182218	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE.	1.36086e-180
NZ_CP010140.1\|WP_001363019.1\|2789143_2790538_-\|colanic-acid-biosynthesis-protein-WcaM	gnl\|CDD\|182253	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional.	0
NZ_CP010140.1\|WP_000079291.1\|2798188_2799625_-\|mannose-1-phosphate-guanyltransferase	gnl\|CDD\|185357	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional.	0
NZ_CP010140.1\|WP_000107816.1\|2804765_2805983_-\|putative-colanic-acid-polymerase-WcaD	gnl\|CDD\|188525	TIGR04010, WcaD, putative colanic acid polymerase WcaD. This membrane protein is believed to function as the colanic acid repeating unit polymerase (in an analagous fashion to wzy proteins in O-antigen polymerization).	0
NZ_CP010140.1\|WP_001581219.1\|2784502_2785519_-\|glycosyltransferase	gnl\|CDD\|340837	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.	3.19816e-66
NZ_CP010140.1\|WP_000999466.1\|2787990_2788986_-\|SDR-family-oxidoreductase	gnl\|CDD\|187549	cd05238, Gne_like_SDR_e, Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs. Nucleoside-diphosphate-sugar 4-epimerase has the characteristic active site tetrad and NAD-binding motif of the extended SDR, and is related to more specifically defined epimerases such as UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), which catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup includes Escherichia coli 055:H7 Gne, a UDP-GlcNAc 4-epimerase, essential for O55 antigen synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	9.00498e-109
NZ_CP010140.1\|WP_001023946.1\|2805957_2807175_-\|colanic-acid-biosynthesis-glycosyltransferase-WcaC	gnl\|CDD\|274919	TIGR04015, WcaC, colanic acid biosynthesis glycosyl transferase WcaC. This gene is one of the glycosyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species.	0
NZ_CP010140.1\|WP_000183124.1\|2795089_2796484_-\|undecaprenyl-phosphate-glucose-phosphotransferase	gnl\|CDD\|182254	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional.	0
NZ_CP010140.1\|WP_001363013.1\|2793609_2795088_-\|M-antigen-undecaprenyl-disphosphate-flippase	gnl\|CDD\|236697	PRK10459, PRK10459, MOP flippase family protein.	0
NZ_CP010140.1\|WP_000888729.1\|2807171_2807660_-\|colanic-acid-biosynthesis-acetyltransferase-WcaB	gnl\|CDD\|182295	PRK10191, PRK10191, putative acyl transferase; Provisional.	7.66653e-101
NZ_CP010140.1\|WP_001456262.1\|2802297_2803419_-\|GDP-mannose-4,6-dehydratase	gnl\|CDD\|224014	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].	0
NZ_CP010140.1\|WP_001153547.1\|2803444_2803993_-\|colanic-acid-biosynthesis-acetyltransferase-WcaF	gnl\|CDD\|188523	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF. This gene is one of the glycosyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species. This acetyltransferase is believed to catalyze the addition of the acetyl group that is attached through an O linkage to the first fucosyl residue of the colanic acid repetitive unit (E unit).	7.2871e-132
NZ_CP010140.1\|WP_069354234.1\|2785537_2786557_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	3.04399e-174
NZ_CP010140.1\|WP_001363021.1\|2796538_2797909_-\|phosphomannomutase-CpsG	gnl\|CDD\|185312	PRK15414, PRK15414, phosphomannomutase.	0
NZ_CP010140.1\|WP_001363014.1\|2791765_2793046_-\|colanic-acid-biosynthesis-pyruvyl-transferase-WcaK	gnl\|CDD\|188521	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK. This gene is the pyruvyl transferase involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species.	0

>NZ_CP010140.1|WP_001363021.1|2796538_2797909_-|phosphomannomutase-CpsG
MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLGGDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPMNYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQITLRDAYVDHLFGYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIPNPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLEKNPGAKIIHDPRLSWNTVDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHYFRDFAYCDSGMIPWLLVAELVCLKGKTLGELVRDRMAAFPASGEINSKLAHPVEAINRVEQHFSREALAVDRTDGISMTFADWRFNLRSSNTEPVVRLNVESRGDVPLMEARTRTLLTLLNE
>NZ_CP010140.1|WP_000183124.1|2795089_2796484_-|undecaprenyl-phosphate-glucose-phosphotransferase
MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSFLYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFNNDFDTQLKIWLAWYGLTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLMESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGARVKKLVHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLIKRAEDIVLATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVMENDKVVTQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYRQLIEGYMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIVFLTVFKGFVNKAAY
>NZ_CP010140.1|WP_001363013.1|2793609_2795088_-|M-antigen-undecaprenyl-disphosphate-flippase
MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLLTVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGIVVCVAVFLLSDAIGDVLNNPDLAPLIKTLSLAFAVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTVVSAHFWPLAMTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVAPNLRFGAWLTADSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQDDTEKLRVNFYKLLSVVGIINFPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCVVGLLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQIINTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLMVSYALGIVLKGQLALGMLLAVQIAAGVLVFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG
>NZ_CP010140.1|WP_001363014.1|2791765_2793046_-|colanic-acid-biosynthesis-pyruvyl-transferase-WcaK
MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPVSSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNIAIAQGFTDFVRLLSDYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGPFQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDFTASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACELTVGTRLHSAIISMNFATPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPALNARLNEAVSRERHTGMQMVQSVLERIGEVK
>NZ_CP010140.1|WP_001363022.1|2790548_2791769_-|colanic-acid-biosynthesis-glycosyltransferase-WcaL
MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAARTRWLQDEPQGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESRNLILSAICGQVATPFHADVFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSREVLNHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKAPATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGVDGDMEGIPVALMEAMAVGIPVVSTLHSGIPELVEADKSGWLVPENDARALAQRLAAFSQLDTDELAPVVKRAREKVEHDFNQQVINRELASLLQAL
>NZ_CP010140.1|WP_001363019.1|2789143_2790538_-|colanic-acid-biosynthesis-protein-WcaM
MPFKKLSRRTFLTASSALAFLHTPFARALPARQSVNINDYNPHDWIASFKQAFSEGQTVVVPAGFVCDNINTGIFIPPGKTLHILGSLRGNGRGRFVLQDGSQVTGEEGGSMHNITLDVRGSDCTIKGLAMSGFGPVTQIYIGGKNKRVMRNLTIDNLTVSHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWNVAINDSDILISDHVIERINCTNGKINWGIGIGLAGSTYDNKYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIKARNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNFRVNNIQLDNTHLAYKLRGIQISAGNAVSFVALTNIEVKRASLELHNKPQHLFMRNIKVMQESSVGPALSMNFDMRKDVRGVFMAKRETLLSLMNIHAVNEKGQSSVDIDRINHHIVNVEKINFRLPERRE
>NZ_CP010140.1|WP_000999466.1|2787990_2788986_-|SDR-family-oxidoreductase
MNDNVLLIGASGFVGTRLLETAIADFNIKNLDKQQSHFYPEITQIGDVRDQQALDQALAGFDTVVLLAAEHRDDVSPTSLYYDVNVQGTRNVLAAMEKNGVKNIIFTSSVAVYGLNKHNPDENHPHDPFNHYGKSKWQAEEVLREWYNKAPTERSLTIIRPTVIFGERNRGNVYNLLKQIAGGKFMMVGAGTNYKSMAYVGNIVEFIKYKLKNVAAGYEVYNYVDKPDLNMNQLVAEVEQSLNKKIPSMHLPYPLGMLGGYCFDILSKITGKKYAVSSVRVKKFCATTQFDATKVHSSGFVAPYTLSQGLDRTLQYEFVHAKKDDITFVSE
>NZ_CP010140.1|WP_001363008.1|2786865_2787759_-|UTP--glucose-1-phosphate-uridylyltransferase-GalF
MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEILLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNVRQGEPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETSRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLSADIWPELERTQPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLRNLKEGAKFRKGIEKLLIK
>NZ_CP010140.1|WP_069354234.1|2785537_2786557_-|UDP-glucose-4-epimerase-GalE
MVIFVTGGAGYIGSHTILELLNNGHDVVSLDNLTNSSIESLKRVEKLTNKKIVSYQGDIRDKSLLSEIFYGHHIDAVIHFASLKSVSESKSKSLEYYSNNVGGTLVLLECMEKYNINKMIFSSSATVYGNNSTPPHTENSRIGEATNPYGTSKFIIEIILKDYCSSDKNKSVIALRYFNPIGAHKSGVIGENPNGVPNNLVPYISKVAQNQLSVLNIYGNDYPTKDGTGVRDYIHVCDLAKGHVKALEYMFSNDVNYEAFNLGTGQGYSVLEVVKMFEIVTKKSIPYAICDRREGDVAESWASADLAHKKLSWKAEKKLKEMIEDVWRWQTNNPNGYGE
>NZ_CP010140.1|WP_001581219.1|2784502_2785519_-|glycosyltransferase
MKNVGFIVTKSEIGGAQTWVNEIANLIQDECKIYLITSEEGWLTNKEVFTRVFVIPGIKKYFDFYAFFELKKILKHNNISTLIASSANAGVYARLVRLLVDFKCVYVSHGWSCLYNGGRLKPIFCAVEKYLSFLTDIIWCVSQSDKIKAIEKIGIRASKIITVSNSVPQIPKRNNKQLQYKVLFVGRLTHPKRPELLANVISKKPQYSLYVVGGGGELESLRKQFSDCENIHFLGEINNFNNYHEYDVFSLISDSEGLPMSGLEAHTAAIPLLLSNVGGCFELIEGNGLLVDNTECDIESKLDKIFDDYMYYSEQANLVSGKFVIENYASAYKSIILG
>NZ_CP010140.1|WP_000079291.1|2798188_2799625_-|mannose-1-phosphate-guanyltransferase
MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRPDILDACEQAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEISAHTAEGNVCHGDVINHKTENSYVYAESGLVTTVGVKDLVVVQTKDAVLIADRNAVQDVKKVVEQIKADGRHEHRVHREVYRPWGKYDSIDAGDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGSYLEEDDVVRFADRYGRV
>NZ_CP010140.1|WP_000699721.1|2799627_2800851_-|colanic-acid-biosynthesis-fucosyltransferase-WcaI
MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYYPQWQVGENYSAWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQRRWKPDRIIGVVPTLFCTPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVAQLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAAENVIFFPNWSEIARFQHVADADVDALRNQLDLPDNKKIILYSGNIGEKQGLENVIEAADRLRDEPLIFAIVGQGGGKARLEKMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGNAVITAEAHTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTLDKENVLRQFINDIRG
>NZ_CP010140.1|WP_000479826.1|2800847_2801327_-|GDP-mannose-mannosyl-hydrolase
MFLRQEDFATVVRSTPLVSLDFIAENSRGEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVAEEDLILPDEQHDDYRWLTPDALLASNDVHANSRAYFLAEKRAGVPGL
>NZ_CP010140.1|WP_000043652.1|2801329_2802295_-|GDP-L-fucose-synthase
MSKQRVFIAGHRGMVGSAIKRQLEQRGDVELVLRTRDELNLLDSRAVHDFFASESIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVDYKGRVVFDASKPDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENRDRFRG
>NZ_CP010140.1|WP_001456262.1|2802297_2803419_-|GDP-mannose-4,6-dehydratase
MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEIPLREMVSEMVANDLEAAKKHSLLKSHGYDVAIALES
>NZ_CP010140.1|WP_001153547.1|2803444_2803993_-|colanic-acid-biosynthesis-acetyltransferase-WcaF
MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRAFLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQKSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKSLPANVVCRGNPAVVIRERVETE
>NZ_CP010140.1|WP_000927058.1|2804008_2804755_-|colanic-acid-biosynthesis-glycosyltransferase-WcaE
MLLSIITVAFRNLEGIVKTHASLAHLAQADDISFEWIVVDGGSNDGTREYLENLNSIYNLRFVSEPDNGIYDAMNKGIAMAQGKFALFLNSGDIFHQDAANFVRKLKMQKDNMMITGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKWRYDLEYKVSSDYALAAKMYKAGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQILHVPGFWAELSWHLRQRTTSKTKALYNKS
>NZ_CP010140.1|WP_000107816.1|2804765_2805983_-|putative-colanic-acid-polymerase-WcaD
MSTSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLLLFLERISVKKLMIALGIGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIRFKTISPHNHRKILRFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVLNFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGVMTFILFYLLEWAFQYLNKEAIKKKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGSSSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIYFSWFAVFLSLWYMGKVIKMMINAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKALNITR
>NZ_CP010140.1|WP_001023946.1|2805957_2807175_-|colanic-acid-biosynthesis-glycosyltransferase-WcaC
MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIVLFRLFNRDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCPTLNNYPPVKIDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIINNGIDMATEAILADLPPVRETQGKPKIAVVAHDLRYDGKTNQQLVREMMALGDKIELHTFGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVIATHSDAAREVLQKSGGKTVSEEEVLQLVQLSKPEIAQAIFGTTLAEFSQRSRAAYSGQQMLEEYVNFYQNL
>NZ_CP010140.1|WP_000888729.1|2807171_2807660_-|colanic-acid-biosynthesis-acetyltransferase-WcaB
MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNIWAAPLLVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKVIK

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Crispr_ID: NZ_CP010140_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010140_5

3579900-3580721

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

13 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP010140_5

>merge|NZ_CP010140|5|3579900-3580721|CRT,PILER-CR,CRISPRCasFinder
GGGTGTTCTACCGCAGGGGCGGGGAATTCTAAGTGATATCCATCATCGCATCCAGTGCGCCCGGTTTATCCCCGCTGGCGCGGGGAACTCTTACTGCTTGGTATGCGGAATCACACCCTGAACGGTTTATCCCCGCTGGCGCGGGGAACACTGAAGCATCAAACATTTGGTGGACCAAACGGACGGTTTATCCCCGCTGGCGCGGGGAACACTGTACGCGGCGAGTTTTAGCGACAGGTCATCCCGGTTTATCCCCGCTGGCGCGGGGAACACGGATCTGCCAGCGCCTCTGCGGGGCGGTAAACCGGTTTATCCCCGCTGGCGCGGGGAACACTACGCCAGCCACCTGCTTCGCCAGCCGTTCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTTTGCTCCCATGTTTTGCCGGTAATCCGCATGGTTTATCCCCGCTGGCGCGGGGAACACATCAGCAGCCAATTCCGCCAATGTGGCGTTAGCGGTTTATCCCCGCTGGCGCGGGGAACACAAAGCACGGAATTTTTACAGCGCGTTAGATCCCGGTTTATCCCCGCTGGCGCGGGGAACACAGTGCGGGCGGTTCAGAGGAATTGTTCGTAGGCGGTTTATCCCCGCTGGCGCGGGGAACACTCACGGTAGCGCCACTGCGCGTCGGTGACGGGCGGTTTATCCCCGCTGGCGCGGGGAACACATAATTCGCAAATCAATATATATTTTGTCCGTCGGTTTATCCCCGCTGGCGCGGGGAACACAATTGCGGATGCTCCCGGAATTGCGCGGGCAACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010140|5|1|3579900-3580721|CRT
GGGTGTTCTACCGCAGGGGCGGGGAATTC	TAAGTGATATCCATCATCGCATCCAGTGCGCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTACTGCTTGGTATGCGGAATCACACCCTGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGAAGCATCAAACATTTGGTGGACCAAACGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACGCGGCGAGTTTTAGCGACAGGTCATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACGCCAGCCACCTGCTTCGCCAGCCGTTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTTTGCTCCCATGTTTTGCCGGTAATCCGCA
TGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAGCAGCCAATTCCGCCAATGTGGCGTTAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAGCACGGAATTTTTACAGCGCGTTAGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGCGGGCGGTTCAGAGGAATTGTTCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGGTAGCGCCACTGCGCGTCGGTGACGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAATTCGCAAATCAATATATATTTTGTCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGCGGATGCTCCCGGAATTGCGCGGGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010140|5|1|3579961-3580721|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTACTGCTTGGTATGCGGAATCACACCCTGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGAAGCATCAAACATTTGGTGGACCAAACGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACGCGGCGAGTTTTAGCGACAGGTCATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACGCCAGCCACCTGCTTCGCCAGCCGTTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTTTGCTCCCATGTTTTGCCGGTAATCCGCA
TGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAGCAGCCAATTCCGCCAATGTGGCGTTAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAGCACGGAATTTTTACAGCGCGTTAGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGCGGGCGGTTCAGAGGAATTGTTCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGGTAGCGCCACTGCGCGTCGGTGACGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAATTCGCAAATCAATATATATTTTGTCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGCGGATGCTCCCGGAATTGCGCGGGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010140|5|5|3579961-3580721|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TTACTGCTTGGTATGCGGAATCACACCCTGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGAAGCATCAAACATTTGGTGGACCAAACGGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTACGCGGCGAGTTTTAGCGACAGGTCATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGATCTGCCAGCGCCTCTGCGGGGCGGTAAAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TACGCCAGCCACCTGCTTCGCCAGCCGTTCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTTTGCTCCCATGTTTTGCCGGTAATCCGCA
TGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCAGCAGCCAATTCCGCCAATGTGGCGTTAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAGCACGGAATTTTTACAGCGCGTTAGATCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGTGCGGGCGGTTCAGAGGAATTGTTCGTAGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCACGGTAGCGCCACTGCGCGTCGGTGACGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATAATTCGCAAATCAATATATATTTTGTCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGCGGATGCTCCCGGAATTGCGCGGGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010140.1\|WP_000144861.1\|3581107_3582031_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP010140.1\|WP_000206443.1\|3583416_3584472_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP010140.1\|WP_001219242.1\|3573561_3574041_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP010140.1\|WP_000517476.1\|3574769_3575081_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP010140.1\|WP_000490426.1\|3578841_3579879_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP010140.1\|WP_000372108.1\|3577681_3578590_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP010140.1\|WP_000246138.1\|3574040_3574751_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP010140.1\|WP_000956458.1\|3589569_3589722_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP010140.1\|WP_000063176.1\|3580817_3581111_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP010140.1\|WP_001295182.1\|3571773_3572535_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP010140.1\|WP_000281446.1\|3582027_3582678_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP010140.1\|WP_001173673.1\|3575647_3576253_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP010140.1\|WP_000085051.1\|3582659_3583406_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP010140.1\|WP_001090387.1\|3576252_3577680_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP010140.1\|WP_000568943.1\|3572515_3573565_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP010140.1\|WP_001084084.1\|3585016_3586579_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP010140.1\|WP_000029329.1\|3584483_3585020_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP010140.1\|WP_001246104.1\|3575274_3575598_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP010140.1\|WP_001233970.1\|3586676_3589376_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP010140.1\|WP_000039842.1\|3589986_3590721_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
NZ_CP010140.1\|WP_000144861.1\|3581107_3582031_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	6.67486e-158
NZ_CP010140.1\|WP_000206443.1\|3583416_3584472_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	5.21697e-155
NZ_CP010140.1\|WP_001219242.1\|3573561_3574041_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP010140.1\|WP_000517476.1\|3574769_3575081_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP010140.1\|WP_000490426.1\|3578841_3579879_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP010140.1\|WP_000372108.1\|3577681_3578590_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP010140.1\|WP_000246138.1\|3574040_3574751_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP010140.1\|WP_000956458.1\|3589569_3589722_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP010140.1\|WP_000063176.1\|3580817_3581111_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP010140.1\|WP_001295182.1\|3571773_3572535_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP010140.1\|WP_000281446.1\|3582027_3582678_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.0289e-91
NZ_CP010140.1\|WP_001173673.1\|3575647_3576253_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP010140.1\|WP_000085051.1\|3582659_3583406_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	5.83917e-49
NZ_CP010140.1\|WP_001090387.1\|3576252_3577680_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP010140.1\|WP_000568943.1\|3572515_3573565_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP010140.1\|WP_001084084.1\|3585016_3586579_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP010140.1\|WP_000029329.1\|3584483_3585020_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	1.12087e-29
NZ_CP010140.1\|WP_001246104.1\|3575274_3575598_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP010140.1\|WP_001233970.1\|3586676_3589376_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.23832e-176
NZ_CP010140.1\|WP_000039842.1\|3589986_3590721_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.33579e-136

>NZ_CP010140.1|WP_000490426.1|3578841_3579879_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP010140.1|WP_000372108.1|3577681_3578590_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP010140.1|WP_001090387.1|3576252_3577680_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEKTFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMAWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFINRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP010140.1|WP_001173673.1|3575647_3576253_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP010140.1|WP_001246104.1|3575274_3575598_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP010140.1|WP_000517476.1|3574769_3575081_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP010140.1|WP_000246138.1|3574040_3574751_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP010140.1|WP_001219242.1|3573561_3574041_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP010140.1|WP_000568943.1|3572515_3573565_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP010140.1|WP_001295182.1|3571773_3572535_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP010140.1|WP_000063176.1|3580817_3581111_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP010140.1|WP_000144861.1|3581107_3582031_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP010140.1|WP_000281446.1|3582027_3582678_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELRTGQQLCFNLRANPTICKSGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP010140.1|WP_000085051.1|3582659_3583406_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP010140.1|WP_000206443.1|3583416_3584472_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWAMAEKGTEQPRSLAAAFYEPINGTRQLEVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP010140.1|WP_000029329.1|3584483_3585020_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQNQ
>NZ_CP010140.1|WP_001084084.1|3585016_3586579_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEVEKLREALLSLEHAFQFGPDSPSFMQDFEALTGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKMWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRFVRQIEEGQDADELLSKWNKEIWLFARQDFDERVFTNPYEPVNLERIMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP010140.1|WP_001233970.1|3586676_3589376_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKEGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLAIKALFPRIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAQAMDIKHYWQKALVQAQNALTVFPPKAETAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGAEGQQEAPLLGKDDYPWLTHVTKTDVHSHRVATRKEVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDGSQRAGKVLICTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRARAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCIEQRQDPEMANVILVTDDESCGYSAMEGLTGKVG
>NZ_CP010140.1|WP_000956458.1|3589569_3589722_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP010140.1|WP_000039842.1|3589986_3590721_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMLEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP010140_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010140_6

3606420-3606936

Unclear

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

8 spacers

The CRISPR arrays of NZ_CP010140_6

>merge|NZ_CP010140|6|3606420-3606936|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCATATACAGCAAACCTTCAGAATGCATTCCGGGCGGTTTATCCCCGCTGGCGCGGGGAACTCGCCGTCTGCCTCCAGCCCAGCCCTGGATATTTCGGTTTATCCCCGCTGGCGCGGGGAACTCTGGTTCACTCACGCAACGTCTGAGCGCGTTGACGGTTTATCCCCGCTGGCGCGGGGAACTCAGGGCCGCCGCTACCCCAGAAGTGCCACTCCCCGGTTTATCCCCGCTGGCGCGGGGAACTCGCGTATCGTCTCGTTATTGCGCCGCCCCAACTCGGTTTATCCCCGCTGGCGCGGGGAACTCAGTATGCGTTCAATCACTGTCAGGCCTACTTCCGGTTTATCCCCGCTGGCGCGGGGAACTCAGTTGCCCGATGGACACTCCCAGACCATCAGCCGGTTTATCCCCGCTGGCGCGGGGAACTCACTAAACTTAATGATGGCCGTTACAGCGTGGACGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP010140|6|6|3606420-3606936|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	ATATACAGCAAACCTTCAGAATGCATTCCGGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGTCTGCCTCCAGCCCAGCCCTGGATATTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGGTTCACTCACGCAACGTCTGAGCGCGTTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGGGCCGCCGCTACCCCAGAAGTGCCACTCCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGTATCGTCTCGTTATTGCGCCGCCCCAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTATGCGTTCAATCACTGTCAGGCCTACTTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTTGCCCGATGGACACTCCCAGACCATCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACTAAACTTAATGATGGCCGTTACAGCGTGGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP010140|6|2|3606420-3606936|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	ATATACAGCAAACCTTCAGAATGCATTCCGGG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCCGTCTGCCTCCAGCCCAGCCCTGGATATTT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TGGTTCACTCACGCAACGTCTGAGCGCGTTGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGGGCCGCCGCTACCCCAGAAGTGCCACTCCC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGTATCGTCTCGTTATTGCGCCGCCCCAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTATGCGTTCAATCACTGTCAGGCCTACTTC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AGTTGCCCGATGGACACTCCCAGACCATCAGC
CGGTTTATCCCCGCTGGCGCGGGGAACTC	ACTAAACTTAATGATGGCCGTTACAGCGTGGA
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP010140|6|2|3606421-3606936|PILER-CR
GGTTTATCCCCGCTGGCGCGGGGAACTCA	TATACAGCAAACCTTCAGAATGCATTCCGGGC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CCGTCTGCCTCCAGCCCAGCCCTGGATATTTC
GGTTTATCCCCGCTGGCGCGGGGAACTCT	GGTTCACTCACGCAACGTCTGAGCGCGTTGAC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	GGGCCGCCGCTACCCCAGAAGTGCCACTCCCC
GGTTTATCCCCGCTGGCGCGGGGAACTCG	CGTATCGTCTCGTTATTGCGCCGCCCCAACTC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	GTATGCGTTCAATCACTGTCAGGCCTACTTCC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	GTTGCCCGATGGACACTCCCAGACCATCAGCC
GGTTTATCCCCGCTGGCGCGGGGAACTCA	CTAAACTTAATGATGGCCGTTACAGCGTGGAC
GGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010140.1\|WP_000021330.1\|3601895_3602681_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP010140.1\|WP_000210878.1\|3610557_3612195_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP010140.1\|WP_001384738.1\|3597326_3598187_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP010140.1\|WP_000046812.1\|3616227_3617529_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP010140.1\|WP_001324445.1\|3598183_3598963_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP010140.1\|WP_000581937.1\|3613619_3613868_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP010140.1\|WP_001288227.1\|3608085_3608226_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010140.1\|WP_000226815.1\|3613945_3616180_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP010140.1\|WP_001071648.1\|3612422_3613214_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP010140.1\|WP_000109532.1\|3596326_3596587_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP010140.1\|WP_000147666.1\|3598940_3600350_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP010140.1\|WP_000254738.1\|3613284_3613620_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP010140.1\|WP_000039683.1\|3604303_3605782_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP010140.1\|WP_001130266.1\|3596603_3597179_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP010140.1\|WP_001268446.1\|3608239_3609112_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP010140.1\|WP_001295150.1\|3595064_3596336_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP010140.1\|WP_001199979.1\|3607275_3607947_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP010140.1\|WP_001164578.1\|3602999_3604277_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP010140.1\|WP_000059312.1\|3600371_3601826_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP010140.1\|WP_000036723.1\|3609171_3610470_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617

Protein	Function_ID	Function_description	E-value
NZ_CP010140.1\|WP_000021330.1\|3601895_3602681_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.14687e-138
NZ_CP010140.1\|WP_000210878.1\|3610557_3612195_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP010140.1\|WP_001384738.1\|3597326_3598187_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	6.38228e-89
NZ_CP010140.1\|WP_000046812.1\|3616227_3617529_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP010140.1\|WP_001324445.1\|3598183_3598963_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.46503e-62
NZ_CP010140.1\|WP_000581937.1\|3613619_3613868_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP010140.1\|WP_000226815.1\|3613945_3616180_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP010140.1\|WP_001071648.1\|3612422_3613214_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP010140.1\|WP_000109532.1\|3596326_3596587_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.6328e-41
NZ_CP010140.1\|WP_000147666.1\|3598940_3600350_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.50431e-51
NZ_CP010140.1\|WP_000254738.1\|3613284_3613620_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP010140.1\|WP_000039683.1\|3604303_3605782_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	9.76816e-108
NZ_CP010140.1\|WP_001130266.1\|3596603_3597179_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP010140.1\|WP_001268446.1\|3608239_3609112_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	5.56011e-100
NZ_CP010140.1\|WP_001295150.1\|3595064_3596336_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.82789e-125
NZ_CP010140.1\|WP_001199979.1\|3607275_3607947_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.23739e-155
NZ_CP010140.1\|WP_001164578.1\|3602999_3604277_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.84544e-29
NZ_CP010140.1\|WP_000059312.1\|3600371_3601826_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.25325e-82
NZ_CP010140.1\|WP_000036723.1\|3609171_3610470_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0

>NZ_CP010140.1|WP_000039683.1|3604303_3605782_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNYFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP010140.1|WP_001164578.1|3602999_3604277_+|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALGMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP010140.1|WP_000021330.1|3601895_3602681_-|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAASCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP010140.1|WP_000059312.1|3600371_3601826_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREVMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP010140.1|WP_000147666.1|3598940_3600350_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP010140.1|WP_001324445.1|3598183_3598963_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWRDYLRQRMQP
>NZ_CP010140.1|WP_001384738.1|3597326_3598187_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLIIVPGALPDWLVSTEDLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPKVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHADCQ
>NZ_CP010140.1|WP_001130266.1|3596603_3597179_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP010140.1|WP_000109532.1|3596326_3596587_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTAERLISACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP010140.1|WP_001295150.1|3595064_3596336_+|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERCITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL
>NZ_CP010140.1|WP_001199979.1|3607275_3607947_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP010140.1|WP_001288227.1|3608085_3608226_+|hypothetical-protein
MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFIQI
>NZ_CP010140.1|WP_001268446.1|3608239_3609112_+|YgcG-family-protein
MRYFILMFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTHKLESIFNNTQVQIAVLIVPTTKDETIEQYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIKVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPTNPSESESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSGVCISAIYLLDLFLFSDKIFSIAVFSFFFTFTIFMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSGGGGSSGGGGASGRW
>NZ_CP010140.1|WP_000036723.1|3609171_3610470_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP010140.1|WP_000210878.1|3610557_3612195_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP010140.1|WP_001071648.1|3612422_3613214_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP010140.1|WP_000254738.1|3613284_3613620_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP010140.1|WP_000581937.1|3613619_3613868_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP010140.1|WP_000226815.1|3613945_3616180_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP010140.1|WP_000046812.1|3616227_3617529_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK

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Crispr_ID: NZ_CP010140_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010140_7

4056298-4056437

Orphan

Consensus_repeat	Method
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010140_7

>merge|NZ_CP010140|7|4056298-4056437|CRISPRCasFinder
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAAACGTAGGTCAGATAAGGTGTTTACGCCGCATCCGACTGCTGTTGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAA

>NZ_CP010140|7|7|4056298-4056437|CRISPRCasFinder
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	ACGTAGGTCAGATAAGGTGTTTACGCCGCATCCGACTGCTGT
TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGATACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010140.1\|WP_000037608.1\|4058364_4058883_+\|protein/nucleic-acid-deglycase	unknown	unknown	gnl\|CDD\|153228
NZ_CP010140.1\|WP_001301318.1\|4061879_4062758_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP010140.1\|WP_000147576.1\|4056488_4057529_-\|permease	unknown	unknown	gnl\|CDD\|223773
NZ_CP010140.1\|WP_000646033.1\|4055708_4056284_+\|divisome-associated-lipoprotein-YraP	unknown	unknown	gnl\|CDD\|182907
NZ_CP010140.1\|WP_000816988.1\|4050640_4051732_+\|fimbrial-protein	unknown	unknown	gnl\|CDD\|366088
NZ_CP010140.1\|WP_000908554.1\|4059645_4060149_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP010140.1\|WP_001136488.1\|4048113_4050630_+\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
NZ_CP010140.1\|WP_001323952.1\|4045568_4046324_+\|galactosamine-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|182064
NZ_CP010140.1\|WP_000421305.1\|4060875_4061871_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP010140.1\|WP_000189314.1\|4059356_4059659_+\|DNA-damage-response-exodeoxyribonuclease-YhbQ	unknown	unknown	gnl\|CDD\|178979
NZ_CP010140.1\|WP_000449030.1\|4058862_4059306_-\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP010140.1\|WP_001158034.1\|4055108_4055699_+\|DnaA-initiator-associating-protein-DiaA	unknown	unknown	gnl\|CDD\|182811
NZ_CP010140.1\|WP_000249160.1\|4052699_4054736_+\|penicillin-binding-protein-activator-LpoA	unknown	unknown	gnl\|CDD\|225649
NZ_CP010140.1\|WP_000809262.1\|4051774_4052635_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|184956
NZ_CP010140.1\|WP_000130392.1\|4062963_4063971_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP010140.1\|WP_000044770.1\|4047388_4048084_+\|molecular-chaperone	unknown	unknown	gnl\|CDD\|225663
NZ_CP010140.1\|WP_001295551.1\|4057601_4058237_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP010140.1\|WP_001045434.1\|4046724_4047309_+\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
NZ_CP010140.1\|WP_000246837.1\|4054693_4055089_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|129354
NZ_CP010140.1\|WP_001295552.1\|4060142_4060667_-\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696

Protein	Function_ID	Function_description	E-value
NZ_CP010140.1\|WP_000037608.1\|4058364_4058883_+\|protein/nucleic-acid-deglycase	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	6.06977e-86
NZ_CP010140.1\|WP_001301318.1\|4061879_4062758_+\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP010140.1\|WP_000147576.1\|4056488_4057529_-\|permease	gnl\|CDD\|223773	COG0701, COG0701, Predicted permeases [General function prediction only].	4.38189e-63
NZ_CP010140.1\|WP_000646033.1\|4055708_4056284_+\|divisome-associated-lipoprotein-YraP	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	1.97056e-117
NZ_CP010140.1\|WP_000816988.1\|4050640_4051732_+\|fimbrial-protein	gnl\|CDD\|366088	pfam00419, Fimbrial, Fimbrial protein.	3.34626e-21
NZ_CP010140.1\|WP_000908554.1\|4059645_4060149_-\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	1.31299e-64
NZ_CP010140.1\|WP_001136488.1\|4048113_4050630_+\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP010140.1\|WP_001323952.1\|4045568_4046324_+\|galactosamine-6-phosphate-isomerase	gnl\|CDD\|182064	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional.	1.51027e-147
NZ_CP010140.1\|WP_000421305.1\|4060875_4061871_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.87234e-118
NZ_CP010140.1\|WP_000189314.1\|4059356_4059659_+\|DNA-damage-response-exodeoxyribonuclease-YhbQ	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	3.58629e-45
NZ_CP010140.1\|WP_000449030.1\|4058862_4059306_-\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	2.19601e-100
NZ_CP010140.1\|WP_001158034.1\|4055108_4055699_+\|DnaA-initiator-associating-protein-DiaA	gnl\|CDD\|182811	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional.	5.61903e-143
NZ_CP010140.1\|WP_000249160.1\|4052699_4054736_+\|penicillin-binding-protein-activator-LpoA	gnl\|CDD\|225649	COG3107, LppC, Putative lipoprotein [General function prediction only].	6.33924e-141
NZ_CP010140.1\|WP_000809262.1\|4051774_4052635_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|184956	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional.	0
NZ_CP010140.1\|WP_000130392.1\|4062963_4063971_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP010140.1\|WP_000044770.1\|4047388_4048084_+\|molecular-chaperone	gnl\|CDD\|225663	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion].	9.16141e-79
NZ_CP010140.1\|WP_001295551.1\|4057601_4058237_-\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.89133e-65
NZ_CP010140.1\|WP_001045434.1\|4046724_4047309_+\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.76746e-31
NZ_CP010140.1\|WP_000246837.1\|4054693_4055089_+\|YraN-family-protein	gnl\|CDD\|129354	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment [Hypothetical proteins, Conserved].	3.92681e-63
NZ_CP010140.1\|WP_001295552.1\|4060142_4060667_-\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	6.78212e-85

>NZ_CP010140.1|WP_000646033.1|4055708_4056284_+|divisome-associated-lipoprotein-YraP
MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQVDDGTLEVRVNSALSKDEQIKKEARINVTAYQGKVLLVGQSPNAELSARAKQIAMGVDGANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMGLVTEREAKAAADIASRVSGVKRVTTAFTFIK
>NZ_CP010140.1|WP_001158034.1|4055108_4055699_+|DnaA-initiator-associating-protein-DiaA
MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD
>NZ_CP010140.1|WP_000246837.1|4054693_4055089_+|YraN-family-protein
MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVNERGGEIDLIMREGRTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGSFDTVDCRFDVVAFTGNEVEWIKDAFNDHS
>NZ_CP010140.1|WP_000249160.1|4052699_4054736_+|penicillin-binding-protein-activator-LpoA
MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKTLLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIAQEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDPDMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTIQQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTVDGVASPAQASVSDLTGEQPAAQPVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNVEELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIPRSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGSPITPRATTDSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATLYASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMGVDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS
>NZ_CP010140.1|WP_000809262.1|4051774_4052635_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAEDTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPGYHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIEAEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVKEDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNALYKYALEQQG
>NZ_CP010140.1|WP_000816988.1|4050640_4051732_+|fimbrial-protein
MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVTVNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQAGYYKLNDSLDIKTTLKANDIPGLVTDQTVSVNTRFTQIKSNTVYSAATQTGVCQGDTSRYGPVNIGANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTAPQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMRIDGTTGVVDQYNLVARRRSSDNAPDVGIRIENLGGGVANIPFQNGILPVDPSGHGTVNMRAWPVNLVGGELETGKFQGTATITVIVR
>NZ_CP010140.1|WP_001136488.1|4048113_4050630_+|fimbrial-biogenesis-outer-membrane-usher-protein
MPQRHHQGHKRTPKQLALIIKRCLPMVLTGSGMLCTTANAEEYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQLLQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLNLSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANFGPWRLRNYSTWTRNDQTSSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFTGVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSSNSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEATAIYGLNNTFTLYSGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNQHSFHGYQWRTQYIKDIPETNTNIAVSYYRYTNDGYFSFDEANTRNWDYNSRQKSEIQFNISQTIFDGVSLYASGSQQDYWGNNEKNRNISVGVSGQQWGIGYSLNYQYSRYTDQNNDRALSLNLSIPLERWLPRSRVSYQMTSQKDRPTQHEMRLDGSLLDDGRLSYSLEQSLDDDNNHNSSVNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGVVIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVDTTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDETGQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQCH
>NZ_CP010140.1|WP_000044770.1|4047388_4048084_+|molecular-chaperone
MSKRTFAVIITLLCSFCIGQALAGGIVLQRTRVIYDASRKEAALPVANKGAETPYLLQSWVDNIDGTSRAPFIITPPLFRLEAGDDSSLRIIKTADNLPENKESLFYINVRAIPAKKKSDNVNANELTLVFKTRIKMFYRPAHLKGRVNDAWKSLEFKRSDHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAINDYGGSSGTETRPLQ
>NZ_CP010140.1|WP_001045434.1|4046724_4047309_+|type-1-fimbrial-protein
MNKVTKTAIAGLLALFAGNAAATDGEIVFDGEILKSACEINDSDKKIEVALGHYNAEQFRSVGDRSPKIPFTIPLVNCPVTGWEHDNGNVEASFRLWLETRDNGTVPNFPNLAKVGSFAGTAATGVGIRIDDAESGNLMPLNAMGNDNTVYQIPADSAGIVNVDLIAYYVSTVEASEITPGEADAVVNVTLDYR
>NZ_CP010140.1|WP_001323952.1|4045568_4046324_+|galactosamine-6-phosphate-isomerase
MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIRSKPDAVICLATGATPLLTYHYLVEKIHQQQVDVSQLTFVKLDEWVDLPLTMPGTCETFLQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLNEPGESLQPACHISQLDARTQQHEMLKTAGRPVTRGITLGLKDILNAREVLLLVTGEGKQDATERFLTAKVSTAIPASFLWLHSNFICLINT
>NZ_CP010140.1|WP_000147576.1|4056488_4057529_-|permease
MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWEPYYGKAFTAAETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLRTLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPATLVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQGGFFSRWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGTVDNSLMWVVAMAVAGCLFVIPTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAVSGVIVGGLALLF
>NZ_CP010140.1|WP_001295551.1|4057601_4058237_-|NAD(P)H-binding-protein
MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGVFNPHDPQLTDALAQVTDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAESMRPEHEGVTILSSSELRKRAE
>NZ_CP010140.1|WP_000037608.1|4058364_4058883_+|protein/nucleic-acid-deglycase
MSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLPAFNREALRLLGA
>NZ_CP010140.1|WP_000449030.1|4058862_4059306_-|YhbP-family-protein
METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFYILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYNRRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA
>NZ_CP010140.1|WP_000189314.1|4059356_4059659_+|DNA-damage-response-exodeoxyribonuclease-YhbQ
MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKGELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD
>NZ_CP010140.1|WP_000908554.1|4059645_4060149_-|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEYHEHFNRF
>NZ_CP010140.1|WP_001295552.1|4060142_4060667_-|SCP2-domain-containing-protein
MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQALDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMKTAPETKQTSVGEPC
>NZ_CP010140.1|WP_000421305.1|4060875_4061871_+|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKADPQNFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ
>NZ_CP010140.1|WP_001301318.1|4061879_4062758_+|U32-family-peptidase
MKYSLGPVLWYWPKETLEEFYQQAATSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNMCAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLNGIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLPLTANSDCNGYWRRLAGLELQA
>NZ_CP010140.1|WP_000130392.1|4062963_4063971_+|LLM-class-flavin-dependent-oxidoreductase
MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPNVRPVPGYGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGVQQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELLG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010140_3	3.1\|794837\|48\|NZ_CP010140\|CRISPRCasFinder	794837-794884	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4089-4136	3	0.938
NZ_CP010140_3	3.1\|794837\|48\|NZ_CP010140\|CRISPRCasFinder	794837-794884	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4088-4135	3	0.938
NZ_CP010140_3	3.1\|794837\|48\|NZ_CP010140\|CRISPRCasFinder	794837-794884	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4088-4135	3	0.938
NZ_CP010140_3	3.1\|794837\|48\|NZ_CP010140\|CRISPRCasFinder	794837-794884	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4088-4135	3	0.938
NZ_CP010140_5	5.1\|3579929\|32\|NZ_CP010140\|CRT	3579929-3579960	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246937-246968	3	0.906
NZ_CP010140_5	5.1\|3579929\|32\|NZ_CP010140\|CRT	3579929-3579960	32	NZ_CP015038	Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence	112768-112799	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51276-51307	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45716-45747	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51276-51307	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45716-45747	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51276-51307	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51276-51307	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51276-51307	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29015-29046	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78292-78323	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39594	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51933	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18560-18591	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49240-49271	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81434-81465	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28916-28947	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36182-36213	7	0.781
NZ_CP010140_6	6.2\|3606510\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606510-3606541	32	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32230-32261	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_MG299151	Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence	51276-51307	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_KY471628	Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence	45716-45747	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_MG299131	Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence	51276-51307	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_KY471629	Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence	45716-45747	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_MG299133	Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence	51276-51307	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_MG299128	Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence	51276-51307	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_MG299147	Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence	51276-51307	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NC_018995	Escherichia coli plasmid pHUSEC41-1, complete sequence	29015-29046	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_CP053235	Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence	78292-78323	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_CP005999	Escherichia coli B7A plasmid pEB1, complete sequence	39563-39594	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	KU932021	Escherichia coli plasmid pEC3I, complete sequence	51902-51933	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_CP024154	Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence	18560-18591	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NC_011754	Escherichia coli ED1a plasmid pECOED, complete sequence	49240-49271	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_CP015141	Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence	81434-81465	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_LR213460	Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3	28916-28947	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_MH287044	Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence	36182-36213	7	0.781
NZ_CP010140_6	6.10\|3606511\|32\|NZ_CP010140\|PILER-CR	3606511-3606542	32	NZ_MH618673	Escherichia coli strain 838B plasmid p838B-R, complete sequence	32230-32261	7	0.781
NZ_CP010140_7	7.1\|4056347\|42\|NZ_CP010140\|CRISPRCasFinder	4056347-4056388	42	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30214-30255	7	0.833
NZ_CP010140_5	5.1\|3579929\|32\|NZ_CP010140\|CRT	3579929-3579960	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1428097-1428128	8	0.75
NZ_CP010140_5	5.3\|3580051\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580051-3580082	32	MK448454	Streptococcus satellite phage Javan361, complete genome	9192-9223	8	0.75
NZ_CP010140_5	5.5\|3580173\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580173-3580204	32	NZ_CP006991	Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence	532343-532374	8	0.75
NZ_CP010140_5	5.6\|3580234\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580234-3580265	32	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	148991-149022	8	0.75
NZ_CP010140_5	5.6\|3580234\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580234-3580265	32	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	530640-530671	8	0.75
NZ_CP010140_5	5.8\|3580356\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580356-3580387	32	NZ_CP044456	Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence	83495-83526	8	0.75
NZ_CP010140_5	5.8\|3580356\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580356-3580387	32	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	301179-301210	8	0.75
NZ_CP010140_5	5.11\|3580539\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580539-3580570	32	NZ_CP034185	Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence	17977-18008	8	0.75
NZ_CP010140_5	5.11\|3580539\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580539-3580570	32	NZ_CP017753	Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence	97497-97528	8	0.75
NZ_CP010140_5	5.13\|3580661\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580661-3580692	32	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	62682-62713	8	0.75
NZ_CP010140_5	5.13\|3580661\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580661-3580692	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1222106-1222137	8	0.75
NZ_CP010140_5	5.13\|3580661\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580661-3580692	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2467671-2467702	8	0.75
NZ_CP010140_5	5.13\|3580661\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580661-3580692	32	NC_008759	Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence	12670-12701	8	0.75
NZ_CP010140_6	6.3\|3606571\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606571-3606602	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1417960-1417991	8	0.75
NZ_CP010140_6	6.11\|3606572\|32\|NZ_CP010140\|PILER-CR	3606572-3606603	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1417960-1417991	8	0.75
NZ_CP010140_7	7.1\|4056347\|42\|NZ_CP010140\|CRISPRCasFinder	4056347-4056388	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24899-24940	8	0.81
NZ_CP010140_5	5.1\|3579929\|32\|NZ_CP010140\|CRT	3579929-3579960	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	141278-141309	9	0.719
NZ_CP010140_5	5.5\|3580173\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580173-3580204	32	NZ_CP040723	Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence	35740-35771	9	0.719
NZ_CP010140_5	5.6\|3580234\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580234-3580265	32	NZ_CP036297	Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence	14953-14984	9	0.719
NZ_CP010140_5	5.6\|3580234\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580234-3580265	32	NZ_CP036288	Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence	14983-15014	9	0.719
NZ_CP010140_5	5.6\|3580234\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580234-3580265	32	NZ_CP015882	Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence	3454-3485	9	0.719
NZ_CP010140_5	5.11\|3580539\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580539-3580570	32	NZ_CP017750	Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence	405875-405906	9	0.719
NZ_CP010140_7	7.1\|4056347\|42\|NZ_CP010140\|CRISPRCasFinder	4056347-4056388	42	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24786-24827	9	0.786
NZ_CP010140_5	5.11\|3580539\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580539-3580570	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	2248362-2248393	10	0.688
NZ_CP010140_5	5.12\|3580600\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580600-3580631	32	CP011075	Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence	244686-244717	10	0.688
NZ_CP010140_5	5.12\|3580600\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580600-3580631	32	GU075905	Prochlorococcus phage P-HM2, complete genome	78536-78567	10	0.688
NZ_CP010140_5	5.13\|3580661\|32\|NZ_CP010140\|CRT,PILER-CR,CRISPRCasFinder	3580661-3580692	32	NC_011987	Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence	86181-86212	10	0.688
NZ_CP010140_6	6.8\|3606876\|32\|NZ_CP010140\|CRISPRCasFinder,CRT	3606876-3606907	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	51062-51093	10	0.688
NZ_CP010140_6	6.16\|3606877\|32\|NZ_CP010140\|PILER-CR	3606877-3606908	32	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	51062-51093	10	0.688
NZ_CP010140_4	4.1\|2798100\|41\|NZ_CP010140\|CRISPRCasFinder	2798100-2798140	41	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	41434-41474	11	0.732

1. spacer 3.1|794837|48|NZ_CP010140|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

2. spacer 3.1|794837|48|NZ_CP010140|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

3. spacer 3.1|794837|48|NZ_CP010140|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

4. spacer 3.1|794837|48|NZ_CP010140|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 3, identity: 0.938

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctga	CRISPR spacer
tttatgccgcatccggcagttatgcgcagatgcctgatgcgacgctgg	Protospacer
****.************.*****************************.

5. spacer 5.1|3579929|32|NZ_CP010140|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 3, identity: 0.906

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
.*******.*********************.*

6. spacer 5.1|3579929|32|NZ_CP010140|CRT matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

taagtgat-atccatcatcgcatccagtgcgcc	CRISPR spacer
-ggttgatcgtccttcatcgcagccagtgcgcc	Protospacer
 .. **** .*** ******** **********

7. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

8. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

9. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

10. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

11. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

12. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

13. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

14. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

15. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

16. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

17. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

18. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

19. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

20. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

21. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

22. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

23. spacer 6.2|3606510|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

24. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

25. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

26. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

27. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

28. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

29. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

30. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

31. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

32. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

33. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

34. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

35. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

36. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

37. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

38. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

39. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

40. spacer 6.10|3606511|32|NZ_CP010140|PILER-CR matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781

--gccgtctgcctccagcccagccctggatattt	CRISPR spacer
tggcc--ctgcctgcagctcagccctggataacg	Protospacer
  ***  ****** ****.************ .

41. spacer 7.1|4056347|42|NZ_CP010140|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.833

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
gcgtaggccagataaggcgtttacgccgcatccggcatttgt	Protospacer
.******.*********.****************.*  .***

42. spacer 5.1|3579929|32|NZ_CP010140|CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75

taagtg---atatccatcatcgcatccagtgcgcc	CRISPR spacer
---gtgcgcccctccatcaccgcttccagtgcgcc	Protospacer
   ***    . *******.*** ***********

43. spacer 5.3|3580051|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to MK448454 (Streptococcus satellite phage Javan361, complete genome) position: , mismatch: 8, identity: 0.75

tgaagcatcaaacatttggtggaccaaacgga	CRISPR spacer
tgaagaatcaaaaatttggtggattgataaga	Protospacer
***** ****** **********...*  .**

44. spacer 5.5|3580173|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP006991 (Rhizobium sp. IE4771 plasmid pRetIE4771e, complete sequence) position: , mismatch: 8, identity: 0.75

ggatctgccagcgcctctgcggggcggtaaac	CRISPR spacer
ggatcggccagcgcatctgcgggaggatgatg	Protospacer
***** ******** ********. *.*.*

45. spacer 5.6|3580234|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tacgccagccacctgcttcgccagccgttcgg	CRISPR spacer
ttccgcagccgcctccttcgccagccgtaccc	Protospacer
* *  *****.*** ************* *

46. spacer 5.6|3580234|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tacgccagccacctgcttcgccagccgttcgg	CRISPR spacer
ctggcccatcacctgcttcgccacctgttcgg	Protospacer
.  *** ..************** *.******

47. spacer 5.8|3580356|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044456 (Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence) position: , mismatch: 8, identity: 0.75

atcagcagccaattccgccaatgtggcgttag	CRISPR spacer
atagtaagccaattcagccaatgtcgcgtcaa	Protospacer
** .  ********* ******** ****.*.

48. spacer 5.8|3580356|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 8, identity: 0.75

atcagcagccaattccgccaatgtggcgttag	CRISPR spacer
atagtaagccaattcagccaatgtcgcgtcaa	Protospacer
** .  ********* ******** ****.*.

49. spacer 5.11|3580539|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP034185 (Deinococcus sp. S14-83 strain S14-83T plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
agttggtagcggccctgcgcgtcggtgacgct	Protospacer
   .******* * ****************

50. spacer 5.11|3580539|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017753 (Cupriavidus sp. USMAHM13 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
ttgaagaagcgcgactgcgcgtcggtgacgtc	Protospacer
*.. .* ***** *****************

51. spacer 5.13|3580661|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

aattgcggatgctcccggaattgcgcgggcaa	CRISPR spacer
gattgcggatgctgccggcattgcgataggga	Protospacer
.************ **** ******  .* .*

52. spacer 5.13|3580661|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

aattgcggatgctcccggaattgcgcgggcaa	CRISPR spacer
tgatggcgctgctcacggaattgcgcgcgcaa	Protospacer
 . **  * ***** ************ ****

53. spacer 5.13|3580661|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

aattgcggatgctcccggaattgcgcgggcaa	CRISPR spacer
tgatggcgctgctcacggaattgcgcgcgcaa	Protospacer
 . **  * ***** ************ ****

54. spacer 5.13|3580661|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NC_008759 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP03, complete sequence) position: , mismatch: 8, identity: 0.75

aattgcggatgctcccggaa-----ttgcgcgggcaa	CRISPR spacer
aaatgcggatgctcccggaaatgagtttcacg-----	Protospacer
** *****************     ** *.**

55. spacer 6.3|3606571|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tggttcactcacgcaacgtctgagcgcgttga	CRISPR spacer
cggggtaatcacgcaacgtccgaccgcgttgt	Protospacer
.**  .* ************.** *******

56. spacer 6.11|3606572|32|NZ_CP010140|PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

tggttcactcacgcaacgtctgagcgcgttga	CRISPR spacer
cggggtaatcacgcaacgtccgaccgcgttgt	Protospacer
.**  .* ************.** *******

57. spacer 7.1|4056347|42|NZ_CP010140|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 8, identity: 0.81

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaat	Protospacer
 .*******.*******.******************  * .*

58. spacer 5.1|3579929|32|NZ_CP010140|CRT matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

taagtgatatccatcatcgcatccagtgcgcc	CRISPR spacer
ctcatcgcatccatcatcggttccagtgcgcc	Protospacer
.  .* ..***********  ***********

59. spacer 5.5|3580173|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040723 (Rhodococcus pyridinivorans strain YF3 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

ggatctgccagcgcctctgcggggcggtaaac	CRISPR spacer
gtcgctgccagcgcctcggcgaggcggtctcg	Protospacer
*   ************* ***.******

60. spacer 5.6|3580234|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP036297 (Planctomycetes bacterium Pla86 plasmid pPla86_1, complete sequence) position: , mismatch: 9, identity: 0.719

tacgccagccacctgcttcgccagccgttcgg	CRISPR spacer
cacgcaagccacctgcatcgccagctgccgct	Protospacer
.**** ********** ********.*..

61. spacer 5.6|3580234|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP036288 (Planctomycetes bacterium Pla133 plasmid pPla133_1, complete sequence) position: , mismatch: 9, identity: 0.719

tacgccagccacctgcttcgccagccgttcgg	CRISPR spacer
cacgcaagccacctgcatcgccagctgccgct	Protospacer
.**** ********** ********.*..

62. spacer 5.6|3580234|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015882 (Ensifer adhaerens strain Casida A plasmid pCasidaAB, complete sequence) position: , mismatch: 9, identity: 0.719

tacgccagccacctgcttcgccagccgttcgg	CRISPR spacer
ctcggcagccacctgctgcgccagctgcgcaa	Protospacer
. ** ************ *******.*. *..

63. spacer 5.11|3580539|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017750 (Cupriavidus sp. USMAA2-4 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
ttgaagaagcgcgactgcgcgtcagtgacgtc	Protospacer
*.. .* ***** **********.******

64. spacer 7.1|4056347|42|NZ_CP010140|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.786

acgtaggtcagataaggtgtttacgccgcatccgactgctgt	CRISPR spacer
ttgtaggtcggataaggcgtttacgccgcatccgacatcaac	Protospacer
 .*******.*******.******************  * ..

65. spacer 5.11|3580539|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

tcacggtagcgccactgcgcgtcggtgacggg	CRISPR spacer
gggacgtcgcgccactgggcgtcggtgatgtc	Protospacer
  .  ** ********* **********.*

66. spacer 5.12|3580600|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to CP011075 (Brevibacillus laterosporus strain B9 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ataattcgcaaatcaatatatattttgtccgt	CRISPR spacer
tattttcggaaatcaatctatattttgcctca	Protospacer
    **** ******** *********.*.

67. spacer 5.12|3580600|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 10, identity: 0.688

ataattcgcaaatcaatatatattttgtccgt	CRISPR spacer
ccagaagtaaaatcaatatataatttttccgt	Protospacer
 .*.     ************* *** *****

68. spacer 5.13|3580661|32|NZ_CP010140|CRT,PILER-CR,CRISPRCasFinder matches to NC_011987 (Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequence) position: , mismatch: 10, identity: 0.688

aattgcggatgctcccggaattgcgcgggcaa	CRISPR spacer
cccagcggatgctcctcgaattgcgcggtagc	Protospacer
  . ***********. ***********  .

69. spacer 6.8|3606876|32|NZ_CP010140|CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.688

actaaacttaatgatggccgttacagcgtgga	CRISPR spacer
gagtaacttaatgatgggcgtcacagcagcgg	Protospacer
.   ************* ***.*****.  *.

70. spacer 6.16|3606877|32|NZ_CP010140|PILER-CR matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 10, identity: 0.688

actaaacttaatgatggccgttacagcgtgga	CRISPR spacer
gagtaacttaatgatgggcgtcacagcagcgg	Protospacer
.   ************* ***.*****.  *.

71. spacer 4.1|2798100|41|NZ_CP010140|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 11, identity: 0.732

ctgccgcgtcttatcaggcctacaaaaccgaaccgtaggtc	CRISPR spacer
ctggcgcgtcttatcagacctacaaaaccccccggcgaatg	Protospacer
*** *************.***********   * *....*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

260078 : 327758

Vibrio_phage(18.75%)

transposase,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162171.1\|260078_261431_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_001232255.1\|261613_262000_+	cytochrome b562	NA	NA	NA	NA
WP_001106226.1\|262044_262509_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	H6WXC9	Vibrio_phage	2.5e-52	59.7
WP_000187791.1\|262666_264805_-	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	9.1e-267	64.6
WP_001301172.1\|265198_266854_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_072301410.1\|266903_268325_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_001181312.1\|268443_269391_-	HTH-type transcriptional regulator TreR	C6ZCU4	Enterobacteria_phage	7.9e-13	21.8
WP_001387276.1\|269575_269629_+	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA
WP_000471889.1\|269769_272466_+	magnesium-translocating P-type ATPase	M1HLC0	Paramecium_bursaria_Chlorella_virus	9.0e-46	27.4
WP_000047539.1\|272671_273058_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_000148581.1\|273130_273592_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_000013046.1\|273604_274540_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	2.9e-52	40.2
WP_001296693.1\|274543_274678_-	pyr operon leader peptide	NA	NA	NA	NA
WP_000230281.1\|274958_275354_-	RidA family protein	NA	NA	NA	NA
WP_000500689.1\|275484_276198_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000256681.1\|276268_276862_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001326836.1\|277006_277459_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA
WP_064774521.1\|277677_279177_+	hypothetical protein	NA	NA	NA	NA
WP_069354155.1\|279232_280237_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_000002953.1\|280398_280815_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_001059412.1\|280860_281364_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000079655.1\|281556_282753_+	DUF898 domain-containing protein	NA	NA	NA	NA
WP_000416382.1\|282808_285664_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.3e-140	36.7
WP_000786399.1\|285663_286107_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_000397144.1\|286460_287972_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.0e-47	38.0
WP_000584114.1\|288238_289339_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_001295681.1\|289338_290421_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_016245206.1\|290539_292042_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	6.7e-83	43.8
WP_001309159.1\|292119_293118_-	DNA-binding transcriptional regulator IdnR	NA	NA	NA	NA
WP_001128335.1\|293184_294504_-	gnt-II system L-idonate transporter	NA	NA	NA	NA
WP_000998695.1\|294565_295330_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_023568197.1\|295353_296385_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA
WP_000896738.1\|296601_297165_+	gluconokinase	NA	NA	NA	NA
WP_001318460.1\|297168_298188_-	NADPH-dependent aldehyde reductase Ahr	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.4e-44	30.7
WP_000483767.1\|302745_304092_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_000179691.1\|304700_305918_+	MFS transporter	NA	NA	NA	NA
WP_000611568.1\|305929_307048_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000594405.1\|307090_307216_+	hypothetical protein	NA	NA	NA	NA
WP_000254999.1\|307268_307526_-	hypothetical protein	NA	NA	NA	NA
WP_085948656.1\|307839_309006_+\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	99.3
WP_000625671.1\|308941_309355_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_001293436.1\|309417_311415_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9
WP_000336726.1\|311568_312387_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
WP_000088391.1\|312422_312725_-\|transposase	transposase	NA	NA	NA	NA
WP_000177057.1\|313658_313916_+	hypothetical protein	NA	NA	NA	NA
WP_000175457.1\|314472_315240_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
WP_000684856.1\|315240_316197_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1
WP_000125187.1\|316193_317192_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_000879164.1\|317188_318091_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_000188262.1\|318135_320460_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_001068910.1\|320546_321500_-	fec operon regulator FecR	NA	NA	NA	NA
WP_001283626.1\|321496_322018_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_000555341.1\|323767_324025_+	hypothetical protein	NA	NA	NA	NA
WP_000937727.1\|324187_324397_-	hypothetical protein	A0A0N7BTS3	Escherichia_phage	5.9e-06	96.0
WP_000823243.1\|324775_326134_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_000998067.1\|326372_327758_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	5.3e-260	89.5

DBSCAN-SWA_2

340560 : 345698

Stx2-converting_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000080200.1\|340560_342174_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.8e-182	63.6
WP_000624722.1\|342204_342555_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|342551_342977_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_109554637.1\|343038_343134_+	DUF905 family protein	NA	NA	NA	NA
WP_001234656.1\|343288_344107_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	1.6e-46	39.7
WP_001350782.1\|344448_344922_+	antirestriction protein	A9J566	Pseudomonas_phage	8.7e-13	30.3
WP_001186775.1\|344937_345414_+	RadC family protein	NA	NA	NA	NA
WP_000692345.1\|345476_345698_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8

DBSCAN-SWA_3

439928 : 517745

Enterobacteria_phage(44.26%)

capsid,terminase,lysis,tail,portal,head,tRNA,integrase

attL 432552:432567|attR 496708:496723

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
432552:432567	attL	NA	NA	NA	NA
WP_001218286.1\|439928_441152_+\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	9.5e-237	99.0
WP_078071578.1\|441336_442578_+	hypothetical protein	NA	NA	NA	NA
WP_024193627.1\|443054_443351_-	hypothetical protein	U5P0J0	Shigella_phage	1.1e-24	72.2
WP_000335009.1\|443398_444277_-	phosphoadenosine phosphosulfate reductase family protein	A0A2R2Z314	Escherichia_phage	8.2e-166	93.1
WP_073545245.1\|444267_444804_-	5'-deoxynucleotidase	K7PKJ9	Enterobacteria_phage	1.4e-99	98.9
WP_001404195.1\|444931_445756_-	YfdQ family protein	Q8SBF9	Shigella_phage	1.0e-149	99.3
WP_001398518.1\|445821_446184_-	hypothetical protein	Q8SBF8	Shigella_phage	3.3e-60	99.2
WP_000859460.1\|446852_447527_-	LexA family transcriptional regulator	Q8SBF6	Shigella_phage	1.7e-131	99.1
WP_000649477.1\|447617_447818_+	transcriptional regulator	U5P445	Shigella_phage	7.9e-32	100.0
WP_000515860.1\|447861_448413_+	hypothetical protein	Q8SBF4	Shigella_phage	7.6e-101	100.0
WP_001087352.1\|448409_449246_+	hypothetical protein	Q8SBF3	Shigella_phage	5.1e-149	98.9
WP_015364394.1\|449250_449475_+	hypothetical protein	A0A291AX25	Escherichia_phage	1.2e-33	91.9
WP_000061519.1\|449471_450290_+	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	4.7e-123	99.6
WP_000055042.1\|450292_450781_+	PerC family transcriptional regulator	U5P0U0	Shigella_phage	6.3e-83	94.4
WP_046660195.1\|450780_451434_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	7.3e-127	99.1
WP_000210170.1\|451430_451757_+	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	5.4e-54	100.0
WP_016240453.1\|451753_452143_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	2.7e-68	99.2
WP_073545246.1\|452162_452972_+	KilA-N domain-containing protein	A5LH75	Enterobacteria_phage	2.4e-151	99.6
WP_073545247.1\|452979_453969_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.3e-195	99.4
WP_085949407.1\|453983_454352_+	antitermination protein Q	A5LH77	Enterobacteria_phage	9.4e-55	87.5
WP_001208502.1\|454387_454837_-	hypothetical protein	A5LH78	Enterobacteria_phage	8.0e-24	43.8
WP_001446998.1\|454858_455800_-	hypothetical protein	A5LH79	Enterobacteria_phage	5.0e-68	44.2
WP_000917724.1\|456068_456272_+	hypothetical protein	A0A291AWX6	Escherichia_phage	6.1e-32	100.0
WP_000799656.1\|456422_457475_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.7e-208	100.0
WP_000839596.1\|457542_457758_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_016063397.1\|457762_458077_+	YdfR family protein	K7PGU6	Enterobacteria_phage	1.7e-52	100.0
WP_032151852.1\|458132_458666_+	lysozyme	K7PLY1	Enterobacteria_phage	1.9e-101	98.9
WP_001300226.1\|458662_459130_+\|lysis	lysis protein	K7PH77	Enterobacteria_phage	2.9e-77	100.0
WP_001139678.1\|459117_459270_+	hypothetical protein	K7PKL2	Enterobacteria_phage	3.1e-20	96.0
WP_000079508.1\|459621_460032_-	DUF1398 family protein	C6ZCX4	Enterobacteria_phage	1.3e-52	76.3
WP_001309326.1\|460089_460323_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	96.3
WP_000453576.1\|460711_461257_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.7e-95	99.4
WP_001027308.1\|461231_463157_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.8
WP_000198149.1\|463153_463360_+\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001307653.1\|463356_464958_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	3.8e-310	99.2
WP_073545248.1\|464938_466258_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.4e-233	98.6
WP_001299443.1\|466267_466600_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.7e-55	100.0
WP_073545249.1\|466655_467681_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.3e-186	96.5
WP_000158899.1\|467722_468118_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.0e-55	92.4
WP_000753019.1\|468129_468483_+\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	2.6e-62	98.3
WP_023147608.1\|468494_469073_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	7.8e-80	99.0
WP_000683145.1\|469069_469465_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.3e-70	100.0
WP_073545342.1\|469472_470213_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.1e-126	95.9
WP_000479153.1\|470228_470651_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.7e-73	100.0
WP_000459457.1\|470632_471067_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_073545250.1\|471059_473639_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	94.4
WP_072936127.1\|473635_473965_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	3.1e-57	97.2
WP_001152619.1\|473964_474663_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	7.3e-133	99.1
WP_000194780.1\|474668_475412_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
WP_000090891.1\|475348_475981_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_073545251.1\|476041_479455_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	96.7
WP_073545252.1\|479525_480125_+	Ail/Lom family outer membrane beta-barrel protein	K7PJP9	Enterobacteria_phage	1.4e-108	97.5
WP_073545343.1\|480189_483735_+\|tail	phage tail protein	K7PGT9	Enterobacteria_phage	0.0e+00	96.8
WP_001678535.1\|484172_485543_-	reverse transcriptase	NA	NA	NA	NA
WP_069914208.1\|485520_486072_-	SLATT domain-containing protein	NA	NA	NA	NA
WP_032174297.1\|486294_486543_-	DinI family protein	K7PLW4	Enterobacteria_phage	5.4e-38	98.8
WP_000202564.1\|486761_488348_+	peptide chain release factor 3	D0R0F5	Streptococcus_phage	5.3e-30	24.9
WP_001295748.1\|488740_489346_+	molecular chaperone OsmY	NA	NA	NA	NA
WP_000490275.1\|489472_489634_+	DUF1328 domain-containing protein	A0A0N7CBR2	Salmonella_phage	1.8e-10	64.2
WP_001299799.1\|489755_490829_+	patatin family protein	NA	NA	NA	NA
WP_000563058.1\|490825_491608_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_001088379.1\|491922_492786_-	YjjW family glycine radical enzyme activase	NA	NA	NA	NA
WP_001143253.1\|492757_494308_-	YjjI family glycine radical enzyme	NA	NA	NA	NA
WP_001295412.1\|494565_495345_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_000477811.1\|495471_496794_+	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	2.3e-79	39.8
496708:496723	attR	NA	NA	NA	NA
WP_001774264.1\|496845_498069_+	phosphopentomutase	NA	NA	NA	NA
WP_000224877.1\|498148_498868_+	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_000105889.1\|499323_500340_-	lipoate--protein ligase LplA	NA	NA	NA	NA
WP_000124615.1\|500367_501012_-	YtjB family periplasmic protein	NA	NA	NA	NA
WP_001132956.1\|501117_502086_+	phosphoserine phosphatase	NA	NA	NA	NA
WP_001029698.1\|502134_503517_+	DNA repair protein RadA	NA	NA	NA	NA
WP_000093810.1\|503537_504770_+	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	A0A0C5K935	Enterococcus_phage	1.6e-82	42.6
WP_000046749.1\|505076_506744_-	energy-dependent translational throttle protein EttA	A0A1V0SKJ1	Klosneuvirus	3.7e-42	26.4
WP_000409451.1\|506954_508892_+	murein transglycosylase	A0A1P8CWQ1	Bacillus_phage	4.0e-11	34.8
WP_000068679.1\|508981_509308_+	trp operon repressor	NA	NA	NA	NA
WP_001346116.1\|509350_509863_-	non-canonical purine NTP phosphatase	NA	NA	NA	NA
WP_000942344.1\|509914_510562_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase GpmB	NA	NA	NA	NA
WP_000371666.1\|510558_511428_-	MDR efflux pump AcrAB transcriptional activator RobA	NA	NA	NA	NA
WP_000875487.1\|511638_512112_+	protein CreA	NA	NA	NA	NA
WP_001188666.1\|512124_512814_+	two-component system response regulator CreB	W8CYM9	Bacillus_phage	2.0e-29	35.3
WP_001219614.1\|512813_514238_+	two-component system sensor histidine kinase CreC	Q8QKV7	Ectocarpus_siliculosus_virus	1.6e-09	20.4
WP_000920307.1\|514295_515648_+	cell envelope integrity protein CreD	NA	NA	NA	NA
WP_001194358.1\|515706_516423_-	two-component system response regulator ArcA	NA	NA	NA	NA
WP_001303782.1\|516518_516659_+	hypothetical protein	NA	NA	NA	NA
WP_001223151.1\|517058_517745_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA

DBSCAN-SWA_4

734109 : 849475

116

Shigella_phage(53.23%)

capsid,terminase,holin,transposase,plate,protease,tail,portal,tRNA,head,integrase

attL 786197:786212|attR 854287:854302

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001260708.1\|734109_735828_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_000094031.1\|735938_736646_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202329.1\|736642_737047_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874224.1\|737164_737980_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294600.1\|738019_738673_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_000593994.1\|738665_739697_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
WP_001140186.1\|739884_740457_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000997010.1\|746214_747018_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	2.4e-39	36.2
WP_000648601.1\|747014_747929_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001230983.1\|748169_748970_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000211685.1\|749047_749818_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644685.1\|749865_751224_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001052721.1\|751295_752051_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_001295200.1\|752084_752807_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000917883.1\|752803_753271_-	ribonuclease HI	J9Q745	Salmonella_phage	1.0e-50	58.7
WP_001300756.1\|753335_754067_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.3e-39	38.1
WP_001086142.1\|754603_755389_+	aminopeptidase	NA	NA	NA	NA
WP_069354207.1\|755525_756005_-	hypothetical protein	NA	NA	NA	NA
WP_000908057.1\|756014_756929_-	hypothetical protein	NA	NA	NA	NA
WP_001284199.1\|756972_757455_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001087742.1\|757478_758831_-	membrane protein	NA	NA	NA	NA
WP_122791621.1\|758841_762276_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001240524.1\|762384_763797_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_000088859.1\|763801_764545_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_073545256.1\|764541_767307_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	1.5e-80	30.6
WP_000343289.1\|767315_768077_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000246445.1\|768081_769413_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001080149.1\|769415_769940_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_001113713.1\|769936_771217_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_000348793.1\|771241_772324_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_000393844.1\|772287_774138_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000611741.1\|774141_774555_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000056978.1\|774561_776037_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000123970.1\|776087_776312_-	hypothetical protein	NA	NA	NA	NA
WP_000037395.1\|776346_776847_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_001142958.1\|777544_778063_+	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_073545257.1\|780491_784745_+	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	3.2e-21	44.2
WP_000978828.1\|784756_785206_+	hypothetical protein	NA	NA	NA	NA
786197:786212	attL	NA	NA	NA	NA
WP_001118055.1\|786644_787415_-	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_000532698.1\|787568_788042_+	C-lysozyme inhibitor	NA	NA	NA	NA
WP_000973093.1\|788084_790529_-	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA
WP_000284050.1\|790768_791347_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_000333380.1\|791552_792320_+	class II glutamine amidotransferase	NA	NA	NA	NA
WP_001225679.1\|792290_793031_-	murein L,D-transpeptidase	NA	NA	NA	NA
WP_000009291.1\|793322_794081_+	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	2.6e-19	37.7
WP_000006256.1\|794256_794754_+\|transposase	REP-associated tyrosine transposase RayT	NA	NA	NA	NA
WP_069354111.1\|795071_796811_-	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
WP_000207589.1\|796755_797541_+	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_001226155.1\|797611_798667_+	DNA polymerase IV	NA	NA	NA	NA
WP_001059874.1\|798663_799116_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001295202.1\|799422_799689_+	hypothetical protein	NA	NA	NA	NA
WP_069354110.1\|800045_801503_-	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001291992.1\|801763_802222_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_000189539.1\|802313_803558_+	esterase FrsA	NA	NA	NA	NA
WP_000174677.1\|803615_804017_+	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000749881.1\|804055_805111_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	7.7e-118	60.9
WP_001285288.1\|805398_806502_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000893260.1\|806513_807767_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.7e-95	47.0
WP_000051893.1\|807971_809135_-\|integrase	site-specific integrase	U5P434	Shigella_phage	5.3e-229	99.7
WP_000433939.1\|809011_809362_-	helix-turn-helix domain-containing protein	U5P4J3	Shigella_phage	4.9e-61	100.0
WP_001519505.1\|809361_809658_-	hypothetical protein	U5P0J0	Shigella_phage	6.8e-48	97.0
WP_001242749.1\|809657_810020_-	phage protein	U5P092	Shigella_phage	2.1e-67	100.0
WP_073545258.1\|810010_810547_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	1.4e-99	98.9
WP_000917896.1\|811223_811520_-	hypothetical protein	Q8SBF7	Shigella_phage	1.2e-52	100.0
WP_000450735.1\|811705_812332_-	LexA family transcriptional regulator	K7PM82	Enterobacteria_phage	5.5e-47	48.8
WP_000205494.1\|812429_812630_+	cell division protein	NA	NA	NA	NA
WP_001434539.1\|812667_813219_+	hypothetical protein	S5FXP0	Shigella_phage	7.6e-101	98.9
WP_001250269.1\|813394_813574_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104954.1\|813563_814505_+	helix-turn-helix domain-containing protein	S5FM81	Shigella_phage	4.3e-144	99.7
WP_072176118.1\|814501_814996_+	PerC family transcriptional regulator	U5P0U0	Shigella_phage	4.3e-87	97.6
WP_015364417.1\|814995_815649_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	5.6e-127	99.1
WP_021549921.1\|815645_815972_+	LexA repressor	A0A0N7KZF7	Stx2-converting_phage	2.7e-53	99.1
WP_000767095.1\|815968_816358_+	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	1.6e-68	99.2
WP_001061403.1\|816377_817175_+	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	2.0e-150	99.6
WP_001360050.1\|817182_818172_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.5e-195	100.0
WP_021519680.1\|818185_818938_+	antitermination protein	Q8SBE4	Shigella_phage	5.8e-136	98.4
WP_000484663.1\|819152_819692_+	hypothetical protein	NA	NA	NA	NA
WP_001310393.1\|819835_820069_+	hypothetical protein	NA	NA	NA	NA
WP_001449601.1\|820347_820641_+	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	1.5e-42	90.7
WP_001120501.1\|820777_821113_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.0e-59	99.1
WP_016236818.1\|821116_821593_+	glycoside hydrolase family protein	Q8SBE0	Shigella_phage	1.5e-84	94.3
WP_032193237.1\|821576_821969_+	DUF2570 domain-containing protein	U5P0U9	Shigella_phage	1.3e-49	82.9
WP_021519683.1\|822306_822813_+	hypothetical protein	NA	NA	NA	NA
WP_021519684.1\|822870_823221_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	2.3e-63	95.7
WP_000929173.1\|823346_823841_+\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	1.3e-88	100.0
WP_123010488.1\|824074_825571_+\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	2.0e-300	99.8
WP_000605606.1\|825582_825765_+	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
WP_023147731.1\|825764_827006_+\|portal	phage portal protein	U5P411	Shigella_phage	1.3e-241	99.5
WP_016244986.1\|826983_827634_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	1.6e-118	99.1
WP_000257519.1\|827648_828854_+\|capsid	phage major capsid protein	A0A1B5FPI9	Escherichia_phage	1.8e-224	100.0
WP_000601360.1\|828903_829104_+	hypothetical protein	S5FNU1	Shigella_phage	3.8e-26	97.0
WP_000927711.1\|829106_829430_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_023147732.1\|829426_829837_+\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	2.1e-71	96.3
WP_000213503.1\|829811_830318_+	hypothetical protein	M1FPE2	Enterobacteria_phage	3.2e-90	99.4
WP_016244984.1\|830314_830875_+	hypothetical protein	Q8SBH4	Shigella_phage	3.0e-105	98.9
WP_000497751.1\|830883_831054_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_016244983.1\|831037_832534_+\|tail	phage tail sheath protein	M1FN90	Enterobacteria_phage	5.4e-274	99.4
WP_000090998.1\|832533_832890_+	hypothetical protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_000661054.1\|832889_833159_+\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
WP_016244982.1\|833300_835136_+\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	2.9e-306	99.3
WP_032193238.1\|835196_836525_+	DNA circularization protein	Q8SBG8	Shigella_phage	2.5e-246	98.6
WP_000999511.1\|836521_837601_+\|plate	baseplate protein	U5P0H6	Shigella_phage	2.6e-206	99.7
WP_001259084.1\|837600_838149_+\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	5.1e-97	98.9
WP_016244980.1\|838148_838574_+\|tail	phage tail protein	U5P0R9	Shigella_phage	2.0e-80	99.3
WP_023147736.1\|838560_839619_+\|plate	baseplate J/gp47 family protein	Q8SBG4	Shigella_phage	8.1e-200	98.9
WP_000383536.1\|839609_840194_+	YmfQ family protein	O22003	Shigella_phage	7.0e-113	99.0
WP_039000333.1\|840197_841124_+	hypothetical protein	U5P0I1	Shigella_phage	9.3e-51	83.1
WP_001515121.1\|841123_841534_+\|tail	tail assembly chaperone	U5P0S4	Shigella_phage	2.3e-25	81.6
WP_001515122.1\|841505_841949_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.5e-46	62.4
WP_023147383.1\|841948_842323_-	hypothetical protein	A0A0F7LBW5	Escherichia_phage	2.8e-14	49.4
WP_032193087.1\|842573_844463_-	DUF262 domain-containing protein	NA	NA	NA	NA
WP_023147381.1\|845318_845651_+	protein FlxA	NA	NA	NA	NA
WP_000169527.1\|845733_846033_+\|transposase	transposase	NA	NA	NA	NA
WP_000878221.1\|846029_846896_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.1e-50	40.2
WP_000749408.1\|847272_847704_-	hypothetical protein	NA	NA	NA	NA
WP_045909840.1\|848260_849475_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	7.7e-130	55.3
854287:854302	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1924753 : 1978248

Escherichia_phage(47.62%)

terminase,holin,lysis,tail,tRNA,integrase

attL 1919137:1919153|attR 1959421:1959437

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1919137:1919153	attL	NA	NA	NA	NA
WP_000628065.1\|1924753_1925986_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387395.1\|1926240_1927224_+	zinc transporter ZntB	NA	NA	NA	NA
WP_000123745.1\|1927701_1929075_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_001157405.1\|1929203_1930139_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
WP_000040851.1\|1930190_1931426_-\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	3.0e-238	98.3
WP_000079604.1\|1931427_1931643_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_001302840.1\|1931742_1931931_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	5.5e-27	98.4
WP_042038331.1\|1931923_1932118_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	1.3e-31	95.3
WP_000166319.1\|1932174_1932984_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
WP_069354050.1\|1932976_1935577_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	3.9e-248	63.4
WP_001485242.1\|1936027_1936198_-	hypothetical protein	A0A0U2SHB5	Escherichia_phage	6.1e-17	71.4
WP_000560223.1\|1936197_1936419_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
WP_001312793.1\|1936859_1937348_+	superinfection exclusion protein B	NA	NA	NA	NA
WP_001169151.1\|1937344_1937500_-	YdaF family protein	M4QQ57	Salicola_phage	6.1e-08	55.3
WP_001394126.1\|1937906_1938623_-	helix-turn-helix domain-containing protein	H9C160	Pectobacterium_phage	1.1e-51	42.0
WP_060615121.1\|1938672_1938888_+	transcriptional regulator	NA	NA	NA	NA
WP_000693850.1\|1938884_1939310_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_073545275.1\|1939381_1940452_+	phage replisome organizer	A0A088CD36	Shigella_phage	1.4e-61	64.1
WP_069354172.1\|1940492_1940915_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	3.4e-61	85.6
WP_001278661.1\|1941314_1944947_+	hypothetical protein	NA	NA	NA	NA
WP_122358658.1\|1945386_1945494_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	9.4e-08	93.1
WP_001445775.1\|1945594_1945720_+	Hok/Gef family protein	A0A0U2QV81	Escherichia_phage	4.0e-10	90.2
WP_001445776.1\|1945802_1946144_-	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_000940344.1\|1947010_1947610_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.9e-106	92.0
WP_000228032.1\|1947609_1947900_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	7.4e-47	88.5
WP_000640106.1\|1947896_1948439_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	5.8e-77	76.3
WP_001208722.1\|1948660_1949230_+	hypothetical protein	NA	NA	NA	NA
WP_001328752.1\|1949198_1949501_-	hypothetical protein	NA	NA	NA	NA
WP_000781775.1\|1949577_1949919_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	6.2e-53	90.1
WP_001194112.1\|1949922_1950399_+	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	2.3e-85	96.2
WP_001228696.1\|1950615_1950801_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.8e-15	98.2
WP_001097895.1\|1950997_1952455_+	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
WP_001291105.1\|1952592_1953384_+	ParB N-terminal domain-containing protein	R4TG31	Halovirus	2.8e-48	40.2
WP_001204028.1\|1953376_1954309_+	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.4e-83	54.9
WP_000126788.1\|1954286_1954496_+	hypothetical protein	NA	NA	NA	NA
WP_069354180.1\|1954499_1955594_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.0e-112	80.2
WP_000625348.1\|1955574_1956876_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	59.6
WP_000763702.1\|1956878_1958285_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	1.0e-186	69.2
WP_001363932.1\|1958268_1959381_+	hypothetical protein	I6PD76	Cronobacter_phage	7.1e-114	54.5
WP_000770042.1\|1959485_1960250_+	hypothetical protein	G8C7P6	Escherichia_phage	6.9e-84	64.2
1959421:1959437	attR	NA	NA	NA	NA
WP_000918487.1\|1960348_1961488_+	hypothetical protein	G8C7P7	Escherichia_phage	7.4e-159	75.0
WP_000634214.1\|1961710_1962106_+	hypothetical protein	NA	NA	NA	NA
WP_000524260.1\|1962105_1962489_+	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
WP_001029819.1\|1962489_1962870_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	6.5e-19	44.4
WP_000673077.1\|1962866_1963259_+	hypothetical protein	NA	NA	NA	NA
WP_069354179.1\|1963285_1964248_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	6.5e-55	38.6
WP_122452218.1\|1964398_1964758_+	hypothetical protein	NA	NA	NA	NA
WP_073545276.1\|1965229_1968463_+\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	1.3e-104	33.3
WP_000024051.1\|1968455_1968794_+\|tail	phage tail protein	H6WZM2	Escherichia_phage	4.0e-28	50.0
WP_001152428.1\|1968793_1969492_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	2.7e-127	94.0
WP_032149348.1\|1969497_1970241_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.9e-147	96.0
WP_032170523.1\|1970138_1970786_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.7e-107	93.0
WP_073545277.1\|1970846_1974245_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	88.0
WP_052921398.1\|1974311_1974911_+	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	5.7e-110	98.0
WP_073545344.1\|1974975_1978248_+\|tail	phage tail protein	K7PGT9	Enterobacteria_phage	0.0e+00	72.4

DBSCAN-SWA_6

2187593 : 2243160

Enterobacteria_phage(51.02%)

terminase,protease,lysis,tail,portal,integrase

attL 2205673:2205688|attR 2243251:2243266

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000527758.1\|2187593_2189054_-	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	4.3e-42	29.8
WP_000347482.1\|2189142_2190426_-	MHS family MFS transporter	NA	NA	NA	NA
WP_120795384.1\|2191029_2191143_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836768.1\|2191211_2191445_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_000086514.1\|2191761_2192352_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	7.3e-25	38.8
WP_000885616.1\|2192449_2193025_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_073545281.1\|2193024_2195985_-	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	1.5e-54	53.7
WP_001233073.1\|2196049_2196649_-	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	2.6e-110	98.5
WP_016238945.1\|2196719_2200133_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.4
WP_019843089.1\|2200193_2200802_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	1.8e-103	96.5
WP_032143461.1\|2200738_2201482_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	6.6e-148	97.6
WP_016238944.1\|2201487_2202186_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	3.3e-133	98.7
WP_000447248.1\|2202195_2202525_-\|tail	phage tail protein	A0A291AWW9	Escherichia_phage	1.7e-60	100.0
WP_000372032.1\|2202524_2205590_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	99.3
WP_001161009.1\|2205561_2205891_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
2205673:2205688	attL	NA	NA	NA	NA
WP_001299384.1\|2205899_2206286_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	4.7e-65	99.2
WP_000211114.1\|2206346_2207090_-\|tail	tail protein	A5LH35	Enterobacteria_phage	1.7e-132	99.2
WP_073545282.1\|2207100_2207502_-\|tail	phage tail protein	A5LH34	Enterobacteria_phage	1.2e-71	98.5
WP_000677102.1\|2207498_2208077_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.2e-101	99.5
WP_001283153.1\|2208088_2208364_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_001097039.1\|2208356_2208680_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	1.5e-51	99.1
WP_001774880.1\|2208766_2210794_-\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	99.5
WP_000985930.1\|2210738_2212247_-\|portal	phage portal protein	A5LH29	Enterobacteria_phage	1.7e-288	99.4
WP_001072975.1\|2212246_2212459_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000507036.1\|2212455_2214555_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	0.0e+00	96.6
WP_000421823.1\|2214563_2215103_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	1.8e-94	99.4
WP_001031431.1\|2215663_2215870_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	6.7e-26	91.2
WP_000035577.1\|2216170_2216581_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.2e-63	89.7
WP_001019606.1\|2216732_2216906_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_001309517.1\|2217077_2217233_-	hypothetical protein	NA	NA	NA	NA
WP_122134696.1\|2217312_2217378_-	hypothetical protein	NA	NA	NA	NA
WP_071524604.1\|2217380_2217569_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|2217579_2217792_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071769.1\|2218154_2218652_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
WP_001092971.1\|2218648_2219182_-	lysozyme	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
WP_000189915.1\|2219178_2219490_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
WP_000839590.1\|2219494_2219710_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000066484.1\|2220464_2220680_-	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
WP_001047131.1\|2221355_2222108_-	antitermination protein	Q8SBE4	Shigella_phage	1.4e-129	94.4
WP_001385829.1\|2222121_2223171_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.7e-112	57.3
WP_023140913.1\|2223172_2223451_-	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
WP_000980997.1\|2223517_2223769_-	hypothetical protein	NA	NA	NA	NA
WP_000884073.1\|2223985_2224198_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	6.6e-29	95.7
WP_001546200.1\|2224242_2224350_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	2.5e-08	96.6
WP_021514655.1\|2224815_2226603_+	DUF4209 domain-containing protein	Q2P9X5	Enterobacteria_phage	7.1e-15	23.4
WP_001151190.1\|2226821_2227223_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	7.1e-64	94.7
WP_000054490.1\|2227263_2228241_-	hypothetical protein	U5P0A0	Shigella_phage	4.5e-56	61.3
WP_000705349.1\|2228221_2228743_-	hypothetical protein	NA	NA	NA	NA
WP_000921594.1\|2228726_2228954_-	transcriptional regulator	NA	NA	NA	NA
WP_000381212.1\|2229034_2229442_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	7.2e-32	51.9
WP_000379589.1\|2229610_2229766_+	DUF1391 family protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_000344944.1\|2229767_2230343_+	hypothetical protein	NA	NA	NA	NA
WP_000854559.1\|2230829_2231018_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001083282.1\|2231014_2231206_+	DUF1482 family protein	NA	NA	NA	NA
WP_001296941.1\|2233821_2234058_+	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_000877001.1\|2234092_2235373_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	6.6e-156	62.3
WP_001360138.1\|2235392_2235503_-	hypothetical protein	NA	NA	NA	NA
WP_000836079.1\|2235560_2236580_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	9.7e-17	25.9
WP_069354043.1\|2236591_2237806_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.8e-46	29.0
WP_000598292.1\|2238011_2238338_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_000705211.1\|2238472_2238814_+	DUF1283 family protein	NA	NA	NA	NA
WP_001138581.1\|2238848_2239409_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_001321287.1\|2239411_2240122_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_001307224.1\|2240229_2240535_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_000041558.1\|2240733_2243160_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.7e-214	49.0
2243251:2243266	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2611176 : 2707282

Escherichia_phage(34.55%)

capsid,terminase,holin,transposase,protease,lysis,tail,portal,head,integrase

attL 2687743:2687802|attR 2715160:2715239

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000826451.1\|2611176_2612340_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	8.9e-200	93.0
WP_000879833.1\|2613728_2614526_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000734031.1\|2614535_2615087_-	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_001274295.1\|2615921_2616236_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_000994405.1\|2616450_2618109_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
WP_000067950.1\|2618101_2619097_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_001282706.1\|2619089_2619776_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_000213294.1\|2619775_2621149_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
WP_000807584.1\|2621167_2621611_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA
WP_000620094.1\|2621607_2622735_+	flagellar hook length control protein FliK	NA	NA	NA	NA
WP_000133106.1\|2622839_2623304_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_001295641.1\|2623308_2624313_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_001282098.1\|2624309_2624723_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_001348482.1\|2624725_2625091_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA
WP_001253441.1\|2625090_2625828_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_000187359.1\|2625837_2626107_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_000942316.1\|2626114_2626900_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_000103987.1\|2627189_2627813_+	transcriptional regulator RcsA	NA	NA	NA	NA
WP_071524607.1\|2627856_2628099_-	protein DsrB	NA	NA	NA	NA
WP_000844800.1\|2628207_2628435_+	peroxide/acid resistance protein YodD	NA	NA	NA	NA
WP_000491504.1\|2628732_2629551_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
WP_001597912.1\|2629547_2631242_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	1.3e-18	35.6
WP_000009307.1\|2631412_2631595_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_000922682.1\|2631673_2632591_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_001212238.1\|2632763_2633684_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_073545293.1\|2633672_2634143_-	VSPR family DNA mismatch endonuclease	E5E3X5	Burkholderia_phage	2.0e-33	47.6
WP_073545294.1\|2634123_2635542_-	DNA-cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.0e-101	54.8
WP_000365561.1\|2635608_2636304_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	28.0
WP_073545295.1\|2636343_2636709_-	permease	NA	NA	NA	NA
WP_000824362.1\|2637275_2638349_+	outer membrane protein F	Q1MVN1	Enterobacteria_phage	6.2e-99	51.6
WP_000218209.1\|2638941_2639793_+	protein deglycase HchA	NA	NA	NA	NA
WP_000826746.1\|2639900_2641259_-	two-component system sensor histidine kinase HprS	Q8QKV7	Ectocarpus_siliculosus_virus	8.7e-05	20.5
WP_001362894.1\|2641258_2641930_-	response regulator transcription factor HprR	W8CYM9	Bacillus_phage	3.1e-32	35.6
WP_000920127.1\|2642062_2642476_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_073545296.1\|2642584_2643589_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_001240091.1\|2643589_2644225_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_001007756.1\|2644481_2645132_+	metal-binding protein ZinT	NA	NA	NA	NA
WP_001079074.1\|2645474_2646005_+	cytochrome b	A0A0U2QLA7	Escherichia_phage	1.9e-56	100.0
WP_073545345.1\|2647495_2647621_-\|tail	phage tail protein	K7PMH7	Enterobacteria_phage	2.5e-12	82.5
WP_073545297.1\|2647675_2650948_-\|tail	phage tail protein	K7PGT9	Enterobacteria_phage	1.4e-290	69.6
WP_069354217.1\|2651012_2651612_-	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	3.3e-110	97.5
WP_073545298.1\|2651682_2655096_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	98.4
WP_069354215.1\|2655156_2655804_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	8.1e-110	95.8
WP_001312811.1\|2655701_2656445_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.1e-150	98.0
WP_060565118.1\|2656450_2657149_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	1.2e-132	97.8
WP_001330090.1\|2657148_2657505_-\|tail	tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.8e-40	66.7
WP_069354183.1\|2657482_2660710_-\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	95.2
WP_077628067.1\|2660756_2661017_-	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	1.7e-39	96.5
WP_001324129.1\|2661058_2661445_-\|tail	tail assembly protein	A0A1B5FP91	Escherichia_phage	8.9e-64	100.0
WP_001517909.1\|2661444_2662149_-	hypothetical protein	A0A1B5FP82	Escherichia_phage	9.1e-115	93.6
WP_001206307.1\|2662209_2662554_-	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	3.9e-55	96.5
WP_000968644.1\|2662550_2663000_-	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	6.1e-64	81.2
WP_001147814.1\|2662996_2663335_-\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	7.5e-51	90.2
WP_000719066.1\|2663343_2663661_-\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	6.2e-23	50.5
WP_000766109.1\|2663737_2664955_-\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	5.9e-162	71.6
WP_000999828.1\|2664969_2665569_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.9e-89	81.0
WP_000923129.1\|2665561_2666788_-\|portal	phage portal protein	Q8SBI0	Shigella_phage	1.1e-203	83.1
WP_001140892.1\|2666935_2668693_-\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.3
WP_001333563.1\|2668692_2669175_-\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	8.7e-85	98.1
WP_001135103.1\|2669322_2669673_-	HNH endonuclease	A0A1B5FP94	Escherichia_phage	4.7e-64	97.4
WP_000738421.1\|2670198_2670492_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001228695.1\|2670582_2670765_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000992100.1\|2670981_2671515_-	lysozyme	Q08J98	Stx2-converting_phage	3.6e-100	94.4
WP_000193264.1\|2671578_2671929_-	YdfR family protein	K7PGU6	Enterobacteria_phage	1.4e-36	94.0
WP_000372595.1\|2671933_2672149_-\|holin	holin	A0A2R2Z340	Escherichia_phage	3.4e-33	98.6
WP_073545299.1\|2672298_2672460_-	hypothetical protein	Q08JA2	Stx2-converting_phage	3.9e-13	84.8
WP_072147991.1\|2672456_2672660_-	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	5.9e-27	95.2
WP_001333560.1\|2672905_2673241_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	1.4e-44	74.8
WP_000562553.1\|2673521_2673653_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	3.7e-06	100.0
WP_000762889.1\|2674548_2675370_-	antitermination protein	K7P7B9	Enterobacteria_phage	2.7e-78	59.0
WP_000904111.1\|2675384_2675741_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.1e-35	62.7
WP_069354185.1\|2675753_2676803_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.2e-108	54.3
WP_001410105.1\|2676804_2677083_-	hypothetical protein	I6PCV7	Cronobacter_phage	1.6e-11	46.9
WP_001013636.1\|2677250_2677463_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	8.9e-26	96.9
WP_021568390.1\|2677507_2677690_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	2.8e-12	74.5
WP_011076332.1\|2677664_2677883_-	hypothetical protein	NA	NA	NA	NA
WP_021568391.1\|2678218_2678455_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	6.7e-14	95.5
WP_001538583.1\|2678495_2679566_-	hypothetical protein	A0A088CD36	Shigella_phage	1.4e-63	65.2
WP_000693850.1\|2679637_2680063_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001538582.1\|2680681_2681020_+	hypothetical protein	H9C160	Pectobacterium_phage	3.3e-06	30.9
WP_000379578.1\|2681312_2681468_+	DUF1391 family protein	M4QQ57	Salicola_phage	2.3e-07	53.2
WP_001171942.1\|2681627_2681846_+	hypothetical protein	NA	NA	NA	NA
WP_001299931.1\|2681849_2682014_-	hypothetical protein	NA	NA	NA	NA
WP_000854564.1\|2682414_2682603_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001070255.1\|2682599_2682791_+	DUF1482 family protein	NA	NA	NA	NA
WP_069354169.1\|2682884_2685326_+	exonuclease	V5UQJ3	Shigella_phage	1.7e-112	46.5
WP_000096344.1\|2685384_2685588_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000533619.1\|2685587_2686613_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.0e-102	57.9
WP_001392298.1\|2686848_2687646_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
2687743:2687802	attL	NA	NA	NA	NA
WP_073545301.1\|2687983_2688514_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.4e-30	43.3
WP_001292571.1\|2688607_2689246_+\|integrase	site-specific integrase	A0A1B0VMI6	Pseudomonas_phage	1.1e-29	41.8
WP_000041053.1\|2690640_2691525_-	DNA-binding protein	NA	NA	NA	NA
WP_000246269.1\|2692612_2693074_-	hypothetical protein	NA	NA	NA	NA
WP_069354168.1\|2693592_2697783_+	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.7e-22	43.3
WP_000036084.1\|2697770_2698163_+	hypothetical protein	NA	NA	NA	NA
WP_123059557.1\|2698806_2705883_+	inverse autotransporter adhesin YeeJ	NA	NA	NA	NA
WP_000483767.1\|2705935_2707282_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
2715160:2715239	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2782386 : 2790538

Prochlorococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000089911.1\|2782386_2783352_-	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	2.2e-87	50.8
WP_001746893.1\|2783354_2784476_-	GDP-mannose 4,6-dehydratase	M4QRT5	Synechococcus_phage	2.0e-132	64.9
WP_001581219.1\|2784502_2785519_-	glycosyltransferase	NA	NA	NA	NA
WP_069354234.1\|2785537_2786557_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	2.4e-84	48.3
WP_001363008.1\|2786865_2787759_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
WP_000999466.1\|2787990_2788986_-	SDR family oxidoreductase	A0A1V0QG29	Shearwaterpox_virus	1.9e-09	26.3
WP_001363019.1\|2789143_2790538_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	4.9e-19	31.9

DBSCAN-SWA_9

2882292 : 2891733

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001292774.1\|2882292_2883429_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7
WP_001317947.1\|2883425_2885426_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001295429.1\|2885550_2886012_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_000950409.1\|2886051_2886522_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	5.2e-82	100.0
WP_000598641.1\|2886568_2887288_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|2887284_2888970_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240401.1\|2889191_2889923_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001216963.1\|2889982_2890090_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|2890070_2890802_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569358.1\|2890806_2891733_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	30.8

DBSCAN-SWA_10

3358516 : 3468603

131

Salmonella_phage(55.43%)

capsid,terminase,holin,lysis,plate,tail,portal,tRNA,head,integrase

attL 3397592:3397606|attR 3472434:3472448

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001356308.1\|3358516_3359254_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219193.1\|3359385_3360720_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_000365855.1\|3360928_3361810_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000189203.1\|3361912_3362500_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627807.1\|3362555_3362939_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.4e-32	72.0
WP_001262716.1\|3363243_3363933_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	7.1e-56	48.8
WP_000997403.1\|3363980_3365018_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|3365224_3365644_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_000138184.1\|3365712_3366411_+	DTW domain-containing protein	NA	NA	NA	NA
WP_000082969.1\|3366442_3369103_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949265.1\|3369216_3370572_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_000464877.1\|3370596_3370941_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000841103.1\|3370937_3372236_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
WP_069354125.1\|3378102_3380676_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.0e-127	35.3
WP_000040129.1\|3380805_3381537_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079100.1\|3381533_3382514_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197686.1\|3382648_3383386_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178456.1\|3383656_3383998_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_001700969.1\|3384101_3384149_+	hypothetical protein	NA	NA	NA	NA
WP_000200101.1\|3384247_3385408_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000225221.1\|3385450_3386572_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168045.1\|3386582_3387653_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.0e-90	51.2
WP_000976004.1\|3387862_3388228_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001212391.1\|3388377_3388896_+	YfiR family protein	NA	NA	NA	NA
WP_000969010.1\|3388885_3390112_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_000589828.1\|3390127_3390610_+	OmpA family protein	NA	NA	NA	NA
WP_073545311.1\|3390781_3391831_-\|integrase	site-specific integrase	A0A0M4S6G4	Salmonella_phage	2.6e-190	91.1
WP_000823621.1\|3391853_3392192_-	DUF2511 domain-containing protein	A0A0M3ULF8	Salmonella_phage	3.7e-58	97.3
WP_000093633.1\|3392200_3393061_-	phage repressor protein CI	Q6K1G0	Salmonella_virus	8.4e-163	98.3
WP_001544858.1\|3393182_3393554_+	hypothetical protein	A0A0M4R4X7	Salmonella_phage	2.6e-60	97.6
WP_000459334.1\|3393586_3394096_+	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	1.1e-88	97.0
WP_000920167.1\|3394103_3394304_+	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	1.1e-30	95.5
WP_000963463.1\|3394267_3394606_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	7.3e-54	94.6
WP_001246238.1\|3394673_3394901_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	2.0e-31	98.7
WP_073545312.1\|3394900_3395122_+	TraR/DksA family transcriptional regulator	A0A0M4S5Q7	Salmonella_phage	7.1e-34	95.9
WP_078071576.1\|3395123_3397346_+	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	90.4
WP_000232651.1\|3397459_3397642_+	hypothetical protein	A0A0M5M1G5	Salmonella_phage	4.5e-26	98.3
3397592:3397606	attL	NA	NA	NA	NA
WP_001622296.1\|3397645_3397876_+	DinI family protein	A0A218M4I0	Erwinia_phage	4.4e-26	71.1
WP_072662389.1\|3398352_3398784_-	hypothetical protein	S4TUD6	Salmonella_phage	3.1e-73	96.5
WP_001407038.1\|3398782_3398974_+	hypothetical protein	S4TRZ0	Salmonella_phage	1.4e-25	95.2
WP_001407037.1\|3399432_3400260_+	hypothetical protein	NA	NA	NA	NA
WP_073545315.1\|3400262_3401012_+	hypothetical protein	S5W9H2	Leptospira_phage	2.8e-05	40.2
WP_072662392.1\|3401083_3402094_-\|portal	phage portal protein	Q6K1J0	Salmonella_virus	1.5e-166	82.9
WP_073545316.1\|3402095_3403865_-\|terminase	terminase ATPase subunit family protein	A0A218M4M1	Erwinia_phage	0.0e+00	98.0
WP_073545317.1\|3404030_3404885_+\|capsid	GPO family capsid scaffolding protein	A0A218M4L9	Erwinia_phage	7.3e-127	81.7
WP_001247241.1\|3404961_3406029_+\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	7.6e-198	99.4
WP_021532440.1\|3406033_3406783_+\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	6.7e-116	90.8
WP_073545318.1\|3406876_3407386_+\|head	head completion/stabilization protein	A0A218M4L7	Erwinia_phage	8.1e-89	97.0
WP_001407031.1\|3407385_3407589_+\|tail	tail protein	A0A0M3ULF4	Salmonella_phage	2.2e-29	92.5
WP_000134662.1\|3407592_3407889_+\|holin	holin	O80308	Escherichia_phage	6.4e-46	98.0
WP_001407030.1\|3407875_3408373_+	glycoside hydrolase family 104 protein	M1TAR2	Escherichia_phage	3.0e-88	94.5
WP_001407029.1\|3408369_3408783_+\|lysis	LysB family phage lysis regulatory protein	O80310	Escherichia_phage	2.0e-45	70.8
WP_001759348.1\|3408754_3408928_+	hypothetical protein	O80311	Escherichia_phage	2.3e-24	96.5
WP_001437785.1\|3408890_3409358_+\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	1.4e-84	100.0
WP_001293098.1\|3409350_3409800_+	phage virion morphogenesis protein	O80313	Escherichia_phage	7.9e-72	98.7
WP_073545319.1\|3409868_3410504_+\|plate	phage baseplate assembly protein V	A0A2I8TV69	Erwinia_phage	5.1e-109	97.6
WP_021532443.1\|3410500_3410848_+	hypothetical protein	A0A218M4K8	Erwinia_phage	1.2e-56	98.3
WP_000246679.1\|3410854_3411763_+\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	5.0e-158	97.7
WP_000999856.1\|3411755_3412364_+\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	1.1e-113	98.0
WP_004017449.1\|3412360_3413344_+	phage Tail Collar domain protein	A0A2I8TVA9	Erwinia_phage	2.8e-146	82.0
WP_073545320.1\|3413343_3413940_+\|tail	tail fiber assembly protein	A0A218M4J2	Erwinia_phage	1.8e-87	80.7
WP_073545321.1\|3414071_3415250_+\|tail	phage tail sheath protein	Q37844	Escherichia_phage	7.6e-215	96.2
WP_001207675.1\|3415265_3415784_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
WP_078071577.1\|3415847_3416183_+\|tail	phage tail assembly protein	S4TTB2	Salmonella_phage	3.4e-51	97.3
WP_000763319.1\|3416215_3416335_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	9.7e-14	94.9
WP_073545322.1\|3416327_3418772_+\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	91.8
WP_001407015.1\|3418785_3419271_+\|tail	phage tail protein	O80317	Escherichia_phage	2.6e-81	94.4
WP_073545323.1\|3419267_3420437_+	phage late control D family protein	Q6K1G4	Salmonella_virus	1.7e-206	95.9
WP_000972010.1\|3420512_3420731_+	DNA-binding transcriptional regulator	Q37973	Salmonella_virus	1.2e-38	100.0
WP_000065253.1\|3420875_3421223_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000264777.1\|3421264_3422032_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043335.1\|3422062_3422611_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256450.1\|3422629_3422878_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460035.1\|3423014_3424376_-	signal recognition particle protein	NA	NA	NA	NA
WP_001189257.1\|3424467_3425334_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_010723175.1\|3425354_3426641_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001296310.1\|3426695_3427289_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059169.1\|3427411_3428290_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880910.1\|3428375_3430037_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203437.1\|3430185_3430527_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001117838.1\|3430588_3430879_-	RnfH family protein	NA	NA	NA	NA
WP_000600189.1\|3430868_3431345_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_000162574.1\|3431476_3431959_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_021534458.1\|3432659_3433142_+	hypothetical protein	Q19UP0	Mannheimia_phage	1.6e-17	34.3
WP_000980501.1\|3433168_3433387_-	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-28	77.8
WP_069354126.1\|3433455_3434556_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	88.0
WP_023135235.1\|3434552_3435038_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.3e-67	80.6
WP_069354127.1\|3435034_3438112_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	69.1
WP_000763311.1\|3438104_3438224_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001281009.1\|3438238_3438541_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
WP_001207665.1\|3438595_3439111_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	6.2e-89	94.7
WP_000046130.1\|3439120_3440293_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.0e-203	90.0
WP_069354128.1\|3440399_3440813_-\|tail	phage tail protein	U5P0S4	Shigella_phage	5.8e-21	71.6
WP_073545324.1\|3440812_3442396_-\|tail	phage tail protein	A0A0F7LDR4	Escherichia_phage	2.2e-84	52.0
WP_021534464.1\|3442392_3442998_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	5.8e-110	92.0
WP_000268297.1\|3442990_3443899_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	2.7e-143	90.7
WP_000177597.1\|3443885_3444245_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.8e-51	85.7
WP_021534466.1\|3444241_3444820_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	9.4e-94	87.0
WP_001504072.1\|3444896_3445697_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_069354130.1\|3445809_3446259_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.2e-59	79.7
WP_086258517.1\|3446251_3446683_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.7e-71	93.0
WP_069354132.1\|3446778_3447207_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.2e-45	74.5
WP_069354133.1\|3447203_3447581_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.0e-16	40.8
WP_069354134.1\|3447582_3448095_-	lysozyme	E5G6N1	Salmonella_phage	1.2e-87	91.1
WP_000171568.1\|3448075_3448291_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_053921329.1\|3448294_3448498_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	6.8e-31	91.0
WP_000673523.1\|3448497_3448962_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
WP_069354135.1\|3449057_3449708_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	1.5e-111	95.8
WP_069354136.1\|3449711_3450770_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.4e-180	92.8
WP_000216240.1\|3450786_3451620_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	3.1e-122	92.1
WP_001098431.1\|3451762_3453529_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.7
WP_042005418.1\|3453528_3454554_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	1.1e-172	87.9
WP_119743262.1\|3454639_3455128_-	hypothetical protein	NA	NA	NA	NA
WP_086258518.1\|3455133_3455448_-	STAS-like domain-containing protein	NA	NA	NA	NA
WP_042005405.1\|3455450_3456518_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|3456887_3457121_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3457131_3457320_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_069354137.1\|3457473_3459888_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.4
WP_069354138.1\|3459884_3460742_-	DNA adenine methylase	E5G6L8	Salmonella_phage	1.7e-160	97.5
WP_000752619.1\|3460738_3460966_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	3.5e-36	98.7
WP_001244230.1\|3460965_3461199_-	DUF2732 family protein	E5G6L6	Salmonella_phage	1.1e-32	97.4
WP_001352070.1\|3461266_3461608_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.3e-54	96.5
WP_000934004.1\|3461689_3461938_+	hypothetical protein	NA	NA	NA	NA
WP_001726296.1\|3462023_3462320_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.3e-22	92.3
WP_001726297.1\|3462327_3462837_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.9e-82	93.5
WP_000102105.1\|3462869_3463112_-	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	6.8e-38	97.5
WP_021552395.1\|3463231_3463864_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	3.7e-67	60.0
WP_069354139.1\|3463866_3464886_+\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	3.9e-191	94.7
WP_021552396.1\|3464890_3466102_+	hypothetical protein	E5G6K9	Salmonella_phage	1.4e-75	37.6
WP_021552397.1\|3466186_3467089_+	hypothetical protein	NA	NA	NA	NA
WP_021552398.1\|3467403_3468603_+\|integrase	tyrosine-type recombinase/integrase	A0A1B5FPC6	Escherichia_phage	1.2e-106	50.6
3472434:3472448	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3559352 : 3572535

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272924.1\|3559352_3561914_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.7e-30	20.6
WP_001141340.1\|3562019_3562676_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	8.0e-49	46.3
WP_001272549.1\|3562726_3563524_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	5.9e-70	56.3
WP_000847985.1\|3563689_3564598_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590392.1\|3564594_3565857_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_001278994.1\|3565853_3566492_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_001136918.1\|3566496_3567273_+	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_000104456.1\|3567361_3568726_+	GntP family transporter	NA	NA	NA	NA
WP_000081550.1\|3568819_3569812_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	6.1e-32	37.6
WP_001272592.1\|3569874_3571014_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.7e-06	35.6
WP_000254708.1\|3571153_3571780_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	5.7e-36	49.7
WP_001295182.1\|3571773_3572535_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-59	48.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010141

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3482 : 39551

Escherichia_phage(38.46%)

transposase,integrase

attL 8398:8457|attR 39546:40368

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067858.1\|3482_4187_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000219391.1\|4309_5215_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000004159.1\|5211_6450_+	MFS transporter	NA	NA	NA	NA
WP_001137892.1\|6449_7034_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|7526_8291_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
8398:8457	attL	NA	NA	NA	NA
WP_001067858.1\|8451_9156_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001235713.1\|9472_10030_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000027057.1\|10212_11073_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_000599533.1\|13185_14391_-	sodium/glutamate symporter	NA	NA	NA	NA
WP_000562367.1\|14834_15155_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_000460653.1\|15147_15534_+	hypothetical protein	NA	NA	NA	NA
WP_001284954.1\|15541_16228_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000088605.1\|16205_16829_-	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001089068.1\|16910_18116_+	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA
WP_000428546.1\|18228_18822_-	tetracyline resistance-associated transcriptional repressor TetC	NA	NA	NA	NA
WP_000428546.1\|19816_20410_+	tetracyline resistance-associated transcriptional repressor TetC	NA	NA	NA	NA
WP_001089068.1\|20522_21728_-	tetracycline efflux MFS transporter Tet(B)	NA	NA	NA	NA
WP_000088605.1\|21809_22433_+	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001284954.1\|22410_23097_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000460653.1\|23104_23491_-	hypothetical protein	NA	NA	NA	NA
WP_000562367.1\|23483_23804_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_000599533.1\|24247_25453_+	sodium/glutamate symporter	NA	NA	NA	NA
WP_001352368.1\|25818_27027_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
WP_000412211.1\|27187_27847_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_000656305.1\|28047_28425_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001138064.1\|28491_31458_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_000147567.1\|31460_32021_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_000454193.1\|32146_32497_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845048.1\|32699_33713_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001389366.1\|33870_34344_+	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000503573.1\|34474_35263_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_000679427.1\|35468_35816_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|35809_36649_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376616.1\|36776_36980_+	hypothetical protein	NA	NA	NA	NA
WP_000184001.1\|37135_38341_+	chromate efflux transporter	NA	NA	NA	NA
WP_001067858.1\|38846_39551_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
39546:40368	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010140

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010141

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection