CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP010147	Escherichia coli strain D5 plasmid B, complete sequence	0 crisprs	NA	0	0
NZ_CP010145	Escherichia coli strain D5 chromosome, complete genome	3 crisprs	cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	7	6
NZ_CP010146	Escherichia coli strain D5 plasmid A, complete sequence	0 crisprs	NA	0	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010145_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010145_1

376007-376098

Orphan

Consensus_repeat	Method
GCATCAGAAGCAGGTAAAAAAGGTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010145_1

>merge|NZ_CP010145|1|376007-376098|CRISPRCasFinder
GCATCAGAAGCAGGTAAAAAAGGTGGACAGCACAGCGGGGGGAATTTCAAGAATGACCCGCAGCGCGCATCTGAAGCAGGTAAAAAAGGTGG

>NZ_CP010145|1|1|376007-376098|CRISPRCasFinder
GCATCAGAAGCAGGTAAAAAAGGTGG	ACAGCACAGCGGGGGGAATTTCAAGAATGACCCGCAGCGC
GCATCTGAAGCAGGTAAAAAAGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010145.1\|WP_001126780.1\|379473_379860_-\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP010145.1\|WP_000191700.1\|381942_382581_+\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP010145.1\|WP_001151437.1\|374986_375583_-\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP010145.1\|WP_000024561.1\|370426_370732_-\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP010145.1\|WP_001001196.1\|378065_378656_-\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP010145.1\|WP_021548692.1\|382620_386583_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP010145.1\|WP_021548691.1\|366019_367192_+\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP010145.1\|WP_001240629.1\|376211_377540_-\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP010145.1\|WP_001028095.1\|377560_378055_-\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP010145.1\|WP_001307099.1\|378665_379466_-\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP010145.1\|WP_001062102.1\|367191_369738_+\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP010145.1\|WP_001297176.1\|380563_381655_-\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP010145.1\|WP_000979516.1\|386637_386847_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010145.1\|WP_001120112.1\|365197_365890_-\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_CP010145.1\|WP_001307708.1\|379871_380564_-\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP010145.1\|WP_000420629.1\|370731_371652_-\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP010145.1\|WP_001044263.1\|373459_374701_+\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP010145.1\|WP_000209854.1\|369734_370334_+\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP010145.1\|WP_000535359.1\|371911_373171_+\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP010145.1\|WP_001143120.1\|374738_374966_-\|YccJ-family-protein	unknown	unknown	gnl\|CDD\|182285

Protein	Function_ID	Function_description	E-value
NZ_CP010145.1\|WP_001126780.1\|379473_379860_-\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP010145.1\|WP_000191700.1\|381942_382581_+\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.12845e-153
NZ_CP010145.1\|WP_001151437.1\|374986_375583_-\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP010145.1\|WP_000024561.1\|370426_370732_-\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	2.74017e-64
NZ_CP010145.1\|WP_001001196.1\|378065_378656_-\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.45614e-128
NZ_CP010145.1\|WP_021548692.1\|382620_386583_-\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP010145.1\|WP_021548691.1\|366019_367192_+\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP010145.1\|WP_001240629.1\|376211_377540_-\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP010145.1\|WP_001028095.1\|377560_378055_-\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	3.76111e-106
NZ_CP010145.1\|WP_001307099.1\|378665_379466_-\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	1.96403e-140
NZ_CP010145.1\|WP_001062102.1\|367191_369738_+\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP010145.1\|WP_001297176.1\|380563_381655_-\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP010145.1\|WP_001120112.1\|365197_365890_-\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	5.89892e-138
NZ_CP010145.1\|WP_001307708.1\|379871_380564_-\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	5.84226e-169
NZ_CP010145.1\|WP_000420629.1\|370731_371652_-\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP010145.1\|WP_001044263.1\|373459_374701_+\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP010145.1\|WP_000209854.1\|369734_370334_+\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	1.10573e-83
NZ_CP010145.1\|WP_000535359.1\|371911_373171_+\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP010145.1\|WP_001143120.1\|374738_374966_-\|YccJ-family-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44

>NZ_CP010145.1|WP_001151437.1|374986_375583_-|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP010145.1|WP_001143120.1|374738_374966_-|YccJ-family-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP010145.1|WP_001044263.1|373459_374701_+|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGIVLIASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP010145.1|WP_000535359.1|371911_373171_+|YccE-family-protein
MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVCFMRLYNELRRKVNEEDTPCLECESLEKEFEEMQNDNDLSLFMRTLRTNDTQIYSGVSGGITYTIQYVQNVDIVRVSLPGRGSESITDFKGYYWYGFMEYIENITACDDVFSEYCLDDENMSIQPEWINTPGISDLDTGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAILVLKEHEYSWALGSHKTQKQVYEEFIKIVDKQTIEALVDTAFNDLREDVKTLFGVNLQSDNKIQGQGGFLSWSFLSFKKEFIDSCLNDKKCILHLPEFIFNDNKVRLVLDTDPEQRVNEVKNFLTALSDSICSLFIVNSNMASISLGNESFSTDEDLEYGYLMNTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAIY
>NZ_CP010145.1|WP_000420629.1|370731_371652_-|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHSDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP010145.1|WP_000024561.1|370426_370732_-|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVTHP
>NZ_CP010145.1|WP_000209854.1|369734_370334_+|molecular-chaperone-TorD
MTTLTAQQIACIYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLAAAVNALENRIAALTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVARCHQHDSFGFYAALSQLLLVLVECDHQNR
>NZ_CP010145.1|WP_001062102.1|367191_369738_+|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP010145.1|WP_021548691.1|366019_367192_+|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLHIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP010145.1|WP_001120112.1|365197_365890_-|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC
>NZ_CP010145.1|WP_001240629.1|376211_377540_-|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPYERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAPVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQEP
>NZ_CP010145.1|WP_001028095.1|377560_378055_-|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP010145.1|WP_001001196.1|378065_378656_-|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTVEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQYVDDAFFAGSTLKSNLLINIGYGDSSKLYARLPRLSFEEACGLL
>NZ_CP010145.1|WP_001307099.1|378665_379466_-|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP010145.1|WP_001126780.1|379473_379860_-|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP010145.1|WP_001307708.1|379871_380564_-|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_CP010145.1|WP_001297176.1|380563_381655_-|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP010145.1|WP_000191700.1|381942_382581_+|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEIFFNQTVENVQRIIIEGIRPR
>NZ_CP010145.1|WP_021548692.1|382620_386583_-|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPVERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAEAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP010145.1|WP_000979516.1|386637_386847_+|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH

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Crispr_ID: NZ_CP010145_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010145_2

2239518-2239974

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT

7 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP010145_2

>merge|NZ_CP010145|2|2239518-2239974|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGGCGCGGGGAACACCAACGAAATTGAGAGCAAAGGTCGCTACGCAGCGGTTTATCCCCGCTGGCGCGGGGAACACTTCATGAAGCACGCTGGAATTTATATTTGCCCCGGTTTATCCCCGCTGGCGCGGGGAACACGCGCAGCCCGATGCGGTTAGAGATATAGGCCTCCGGTTTATCCCCGCTGGCGCGGGGAACACTGACCGATTTTATTGATCGCCCGATAGACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACCCAGATTCCGCTTTCTCTACCTTCTCTTTTTCCGGTTTATCCCCGCTGGCGCGGGGAACACGGGTTGTGCGCCCTGGTGGGCGAAAACGGTGGCGGTTTATCCCCGCTGGCGCGGGGAACACATTTTCCTGATCGAGTTTTGAGAATTTTGTCGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010145|2|1|2239518-2239974|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAACGAAATTGAGAGCAAAGGTCGCTACGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCATGAAGCACGCTGGAATTTATATTTGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCAGCCCGATGCGGTTAGAGATATAGGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTCCTGATCGAGTTTTGAGAATTTTGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010145|2|2|2239518-2239974|CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAACGAAATTGAGAGCAAAGGTCGCTACGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCATGAAGCACGCTGGAATTTATATTTGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCAGCCCGATGCGGTTAGAGATATAGGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTCCTGATCGAGTTTTGAGAATTTTGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010145|2|1|2239518-2239974|CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAACGAAATTGAGAGCAAAGGTCGCTACGCAG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTCATGAAGCACGCTGGAATTTATATTTGCCC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGCAGCCCGATGCGGTTAGAGATATAGGCCTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGACCGATTTTATTGATCGCCCGATAGACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGATTCCGCTTTCTCTACCTTCTCTTTTTC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGTTGTGCGCCCTGGTGGGCGAAAACGGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATTTTCCTGATCGAGTTTTGAGAATTTTGTCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010145.1\|WP_001233938.1\|2245932_2248632_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP010145.1\|WP_001219242.1\|2233117_2233597_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP010145.1\|WP_000517476.1\|2234325_2234637_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP010145.1\|WP_001246104.1\|2234830_2235154_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP010145.1\|WP_000956458.1\|2248825_2248978_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP010145.1\|WP_000206429.1\|2242669_2243725_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP010145.1\|WP_001295182.1\|2231329_2232091_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP010145.1\|WP_000144848.1\|2240360_2241284_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP010145.1\|WP_000490440.1\|2238397_2239435_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP010145.1\|WP_000372108.1\|2237237_2238146_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP010145.1\|WP_000063176.1\|2240070_2240364_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP010145.1\|WP_001173673.1\|2235203_2235809_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP010145.1\|WP_000029315.1\|2243739_2244276_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP010145.1\|WP_001090346.1\|2235808_2237236_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP010145.1\|WP_000568943.1\|2232071_2233121_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP010145.1\|WP_000039843.1\|2249242_2249977_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP010145.1\|WP_001084076.1\|2244272_2245835_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP010145.1\|WP_000281423.1\|2241280_2241931_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP010145.1\|WP_000246136.1\|2233596_2234307_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP010145.1\|WP_000085053.1\|2241912_2242659_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776

Protein	Function_ID	Function_description	E-value
NZ_CP010145.1\|WP_001233938.1\|2245932_2248632_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.43239e-178
NZ_CP010145.1\|WP_001219242.1\|2233117_2233597_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP010145.1\|WP_000517476.1\|2234325_2234637_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP010145.1\|WP_001246104.1\|2234830_2235154_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP010145.1\|WP_000956458.1\|2248825_2248978_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP010145.1\|WP_000206429.1\|2242669_2243725_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.2231e-155
NZ_CP010145.1\|WP_001295182.1\|2231329_2232091_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP010145.1\|WP_000144848.1\|2240360_2241284_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.03875e-156
NZ_CP010145.1\|WP_000490440.1\|2238397_2239435_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP010145.1\|WP_000372108.1\|2237237_2238146_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP010145.1\|WP_000063176.1\|2240070_2240364_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP010145.1\|WP_001173673.1\|2235203_2235809_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP010145.1\|WP_000029315.1\|2243739_2244276_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.47989e-27
NZ_CP010145.1\|WP_001090346.1\|2235808_2237236_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP010145.1\|WP_000568943.1\|2232071_2233121_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP010145.1\|WP_000039843.1\|2249242_2249977_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NZ_CP010145.1\|WP_001084076.1\|2244272_2245835_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP010145.1\|WP_000281423.1\|2241280_2241931_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.48092e-91
NZ_CP010145.1\|WP_000246136.1\|2233596_2234307_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.02844e-120
NZ_CP010145.1\|WP_000085053.1\|2241912_2242659_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.27305e-47

>NZ_CP010145.1|WP_000490440.1|2238397_2239435_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTASDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSQGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRFDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP010145.1|WP_000372108.1|2237237_2238146_-|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP010145.1|WP_001090346.1|2235808_2237236_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARIDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP010145.1|WP_001173673.1|2235203_2235809_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP010145.1|WP_001246104.1|2234830_2235154_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP010145.1|WP_000517476.1|2234325_2234637_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP010145.1|WP_000246136.1|2233596_2234307_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQIPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP010145.1|WP_001219242.1|2233117_2233597_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP010145.1|WP_000568943.1|2232071_2233121_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP010145.1|WP_001295182.1|2231329_2232091_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP010145.1|WP_000063176.1|2240070_2240364_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP010145.1|WP_000144848.1|2240360_2241284_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPTIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP010145.1|WP_000281423.1|2241280_2241931_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTAQLLPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGRDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP010145.1|WP_000085053.1|2241912_2242659_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQGGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDHFHDLKVSLPKLQDECWWEGEHDGLVVSKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP010145.1|WP_000206429.1|2242669_2243725_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLSLLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP010145.1|WP_000029315.1|2243739_2244276_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDGHKATLRKWHEELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTCLSAVKTPDDLLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP010145.1|WP_001084076.1|2244272_2245835_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGIRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQDDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHRFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADGLLSKWNKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP010145.1|WP_001233938.1|2245932_2248632_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPTSSLSLFHSRFAFSDRQRIETKTLARFGKEGSSQRAGKALISTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPDEEWFGSAMRNSAYIYPDHGRIWLTQRVLRQQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYTTGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDNESCGYSATEGLIGKVG
>NZ_CP010145.1|WP_000956458.1|2248825_2248978_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP010145.1|WP_000039843.1|2249242_2249977_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP010145_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010145_3

2255476-2256297

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

13 spacers

cas3,cas8e,cse2gr11,cas7

The CRISPR arrays of NZ_CP010145_3

>merge|NZ_CP010145|3|2255476-2256297|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATCCCCGCTGGCGCGGGGAACTCTTTTGTGCCCTGGCGTTTTGCTGGCTCTCGCGCGGTTTATCCCCGCTGGCGCGGGGAACACTTTGCCGCTGTCAGCATTGCTGGCGCGTAATACGGTTTATCCCCGCTGGCGCGGGGAACACAAAATTCATATTGATAAACACCGCGTTTGTATCGGTTTATCCCCGCTGGCGCGGGGAACACTTTACTACAATAGGTGGACACGCTACGGCGCACGGTTTATCCCCGCTGGCGCGGGGAACACAAATATGGGGAGCGCCGTTAATGAAATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACACCGCCGCGGACTCACGAGCAGGCCATCACAGACCGGTTTATCCCCGCTGGCGCGGGGAACACCAGTTGTCTGATGTGTCGCTGGCCTGGCGGCACGGTTTATCCCCGCTGGCGCGGGGAACACCCGTTCATATTCGTTTCCTCGTGGCGCGATCTAGGTTTATCCCCGCTGGCGCGGGGAACACGGACCAAATACCCGTCCCTCAATCCACGCCGTCGGTTTATCCCCGCTGGCGCGGGGAACACAATTGAGACGTTCCACGCAATTAAACAAGCCGCGGTTTATCCCCGCTGGCGCGGGGAACACTTGTTGATAAAGTGGCGCGCCAGGTGCGTTTACGGTTTATCCCCGCTGGCGCGGGGAACACCGGTCGTCAGGTACTAATCTAAAGGCTGTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGCGTCCGTCGTCGTTTAAAGCGTCAATGCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010145|3|3|2255476-2256297|CRISPRCasFinder
TGGTTTATCCCCGCTGGCGCGGGGAACTC	TTTTGTGCCCTGGCGTTTTGCTGGCTCTCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCCGCTGTCAGCATTGCTGGCGCGTAATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAATTCATATTGATAAACACCGCGTTTGTAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACTACAATAGGTGGACACGCTACGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATATGGGGAGCGCCGTTAATGAAATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCGCGGACTCACGAGCAGGCCATCACAGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGTTGTCTGATGTGTCGCTGGCCTGGCGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTCATATTCGTTTCCTCGTGGCGCGATCT
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GGACCAAATACCCGTCCCTCAATCCACGCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGAGACGTTCCACGCAATTAAACAAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGTTGATAAAGTGGCGCGCCAGGTGCGTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGTCGTCAGGTACTAATCTAAAGGCTGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGCGTCCGTCGTCGTTTAAAGCGTCAATGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010145|3|2|2255476-2256297|CRT
TGGTTTATCCCCGCTGGCGCGGGGAACTC	TTTTGTGCCCTGGCGTTTTGCTGGCTCTCGCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCCGCTGTCAGCATTGCTGGCGCGTAATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAATTCATATTGATAAACACCGCGTTTGTAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACTACAATAGGTGGACACGCTACGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATATGGGGAGCGCCGTTAATGAAATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCGCGGACTCACGAGCAGGCCATCACAGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGTTGTCTGATGTGTCGCTGGCCTGGCGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTCATATTCGTTTCCTCGTGGCGCGATCT
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GGACCAAATACCCGTCCCTCAATCCACGCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGAGACGTTCCACGCAATTAAACAAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGTTGATAAAGTGGCGCGCCAGGTGCGTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGTCGTCAGGTACTAATCTAAAGGCTGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGCGTCCGTCGTCGTTTAAAGCGTCAATGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP010145|3|2|2255537-2256297|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTGCCGCTGTCAGCATTGCTGGCGCGTAATA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAAATTCATATTGATAAACACCGCGTTTGTAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTTACTACAATAGGTGGACACGCTACGGCGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AAATATGGGGAGCGCCGTTAATGAAATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCCGCGGACTCACGAGCAGGCCATCACAGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGTTGTCTGATGTGTCGCTGGCCTGGCGGCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCGTTCATATTCGTTTCCTCGTGGCGCGATCT
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GGACCAAATACCCGTCCCTCAATCCACGCCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATTGAGACGTTCCACGCAATTAAACAAGCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGTTGATAAAGTGGCGCGCCAGGTGCGTTTA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGGTCGTCAGGTACTAATCTAAAGGCTGTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGCGTCCGTCGTCGTTTAAAGCGTCAATGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010145.1\|WP_001317283.1\|2254282_2254837_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP010145.1\|WP_000793004.1\|2258096_2259002_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP010145.1\|WP_000254745.1\|2263568_2263904_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP010145.1\|WP_000210878.1\|2260841_2262479_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP010145.1\|WP_000036723.1\|2259455_2260754_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP010145.1\|WP_001379137.1\|2257480_2258083_+\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP010145.1\|WP_001290706.1\|2250050_2251763_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP010145.1\|WP_000029315.1\|2243739_2244276_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP010145.1\|WP_000039843.1\|2249242_2249977_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP010145.1\|WP_001071648.1\|2262706_2263498_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP010145.1\|WP_000581937.1\|2263903_2264152_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP010145.1\|WP_000956458.1\|2248825_2248978_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP010145.1\|WP_000206429.1\|2242669_2243725_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP010145.1\|WP_001199982.1\|2256636_2257308_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP010145.1\|WP_001084076.1\|2244272_2245835_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP010145.1\|WP_021548854.1\|2251762_2253562_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP010145.1\|WP_001233938.1\|2245932_2248632_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP010145.1\|WP_000226815.1\|2264229_2266464_-\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP010145.1\|WP_000108294.1\|2253880_2254243_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP010145.1\|WP_000034929.1\|2259037_2259400_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP010145.1\|WP_001317283.1\|2254282_2254837_+\|carbohydrate-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	5.41884e-35
NZ_CP010145.1\|WP_000793004.1\|2258096_2259002_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.06471e-80
NZ_CP010145.1\|WP_000254745.1\|2263568_2263904_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_CP010145.1\|WP_000210878.1\|2260841_2262479_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP010145.1\|WP_000036723.1\|2259455_2260754_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP010145.1\|WP_001379137.1\|2257480_2258083_+\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	1.00218e-77
NZ_CP010145.1\|WP_001290706.1\|2250050_2251763_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP010145.1\|WP_000029315.1\|2243739_2244276_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.47989e-27
NZ_CP010145.1\|WP_000039843.1\|2249242_2249977_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	7.99311e-138
NZ_CP010145.1\|WP_000226815.1\|2264229_2266464_-\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP010145.1\|WP_000581937.1\|2263903_2264152_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP010145.1\|WP_000956458.1\|2248825_2248978_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP010145.1\|WP_000206429.1\|2242669_2243725_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.2231e-155
NZ_CP010145.1\|WP_001199982.1\|2256636_2257308_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	9.11521e-156
NZ_CP010145.1\|WP_001084076.1\|2244272_2245835_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP010145.1\|WP_021548854.1\|2251762_2253562_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP010145.1\|WP_001233938.1\|2245932_2248632_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.43239e-178
NZ_CP010145.1\|WP_000108294.1\|2253880_2254243_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	1.01593e-59
NZ_CP010145.1\|WP_001071648.1\|2262706_2263498_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160

>NZ_CP010145.1|WP_001317283.1|2254282_2254837_+|carbohydrate-kinase
MLGCCVLDIWGMTWKTTATLLLLVPVLQAPLARYAWIYRSILESVALMLKNNYDNMRNEMNHFAKHVIITGGGSNSDLFMQIFADMFNLPARRNAINGCASLGAAINKAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHNDVILKKSYEVMHGELGNVDSIQSWSNA
>NZ_CP010145.1|WP_000108294.1|2253880_2254243_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP010145.1|WP_021548854.1|2251762_2253562_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLTAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLTGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGELRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKGKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NZ_CP010145.1|WP_001290706.1|2250050_2251763_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP010145.1|WP_000039843.1|2249242_2249977_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMSEEETRFFGLKRECGLHEG
>NZ_CP010145.1|WP_000956458.1|2248825_2248978_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP010145.1|WP_001233938.1|2245932_2248632_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPTSSLSLFHSRFAFSDRQRIETKTLARFGKEGSSQRAGKALISTQVLEQSVDCDLDEMISDLAPIDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPDEEWFGSAMRNSAYIYPDHGRIWLTQRVLRQQGAIQMPHSARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYTTGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDNESCGYSATEGLIGKVG
>NZ_CP010145.1|WP_001084076.1|2244272_2245835_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGIRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQDDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHRFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADGLLSKWNKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP010145.1|WP_000029315.1|2243739_2244276_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKDGHKATLRKWHEELQAKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTCLSAVKTPDDLLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP010145.1|WP_000206429.1|2242669_2243725_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLSLLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTIRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP010145.1|WP_001199982.1|2256636_2257308_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGSASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP010145.1|WP_001379137.1|2257480_2258083_+|LemA-family-protein
MLRTFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSNHEKDVLEAVTLARSQANRASSDLQQTPGNEQKLQAWQQAQAQVTRTLGQLTIISERYPELKAQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNASAH
>NZ_CP010145.1|WP_000793004.1|2258096_2259002_+|YgcG-family-protein
MKNLILLLVLICSSAFAVQVPVPEFAKYINDLTGTLTREEVSTLTSQIKTLTQKSHAQLIVLVVETTGDETIEQYATRVFERWQPGHKNLDDGILLVVAWQDHTVHIEIGYGLEGILTDAQSGQIIRNSIIPAFKKGDLAVGLQQGIGDIETRLSENDLVNNTSPDHPLPFSGWWALLVWAIVLTFISARGYVKTLGVICFAAIILAFVLPIAGYSGSWGVLATLLCFATPFLVVAIAFTPFGRKVRDSMRSANRPSRYERSNSASRHSSSSSSSSSSSFNNDNFSGGGGSSGGGGASGRW
>NZ_CP010145.1|WP_000034929.1|2259037_2259400_+|hypothetical-protein
MSKILANHPRLSKFVFGLFGAAGMIWLNKAFQGDELFQLITSLLALDTFVYFCIYSLINPIPEANDFLWDYKVHQRKYSSNISHNDFVSNVRNSRKIVRILILVGITFINVIALLTKLKM
>NZ_CP010145.1|WP_000036723.1|2259455_2260754_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP010145.1|WP_000210878.1|2260841_2262479_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP010145.1|WP_001071648.1|2262706_2263498_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP010145.1|WP_000254745.1|2263568_2263904_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP010145.1|WP_000581937.1|2263903_2264152_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP010145.1|WP_000226815.1|2264229_2266464_-|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010145_1	1.1\|376033\|40\|NZ_CP010145\|CRISPRCasFinder	376033-376072	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP019314	Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence	71972-72003	6	0.812
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	66681-66712	7	0.781
NZ_CP010145_3	3.6\|2255810\|32\|NZ_CP010145\|CRISPRCasFinder,CRT,PILER-CR	2255810-2255841	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	555773-555804	7	0.781
NZ_CP010145_2	2.5\|2239792\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239792-2239823	32	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	115828-115859	9	0.719
NZ_CP010145_2	2.5\|2239792\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239792-2239823	32	KY579375	Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome	4523-4554	9	0.719
NZ_CP010145_2	2.5\|2239792\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239792-2239823	32	EU030939	Sulfolobus spindle-shaped virus 5, complete genome	8793-8824	9	0.719
NZ_CP010145_2	2.5\|2239792\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239792-2239823	32	JF412294	EBPR podovirus 1, partial sequence	3991-4022	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP020898	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence	46007-46038	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013555	Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence	125777-125808	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP020950	Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence	134655-134686	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013587	Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence	68724-68755	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	166140-166171	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013598	Rhizobium sp. N741 plasmid pRspN741c, complete sequence	103164-103195	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013578	Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013544	Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence	36015-36046	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013566	Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence	125777-125808	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013502	Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence	103085-103116	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013508	Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence	103164-103195	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013519	Rhizobium sp. N113 plasmid pRspN113b, complete sequence	103163-103194	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013572	Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013492	Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence	103161-103192	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013497	Rhizobium sp. N621 plasmid pRspN621b, complete sequence	103161-103192	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP013592	Rhizobium sp. N871 plasmid pRspN871b, complete sequence	103085-103116	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	CP007643	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence	92301-92332	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NC_010996	Rhizobium etli CIAT 652 plasmid pB, complete sequence	100863-100894	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	97248-97279	9	0.719
NZ_CP010145_3	3.1\|2255505\|32\|NZ_CP010145\|CRISPRCasFinder,CRT	2255505-2255536	32	MK249151	Blackfly microvirus SF02 isolate 049, complete genome	1908-1939	9	0.719
NZ_CP010145_2	2.6\|2239853\|32\|NZ_CP010145\|PILER-CR,CRISPRCasFinder,CRT	2239853-2239884	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1679246-1679277	10	0.688
NZ_CP010145_3	3.1\|2255505\|32\|NZ_CP010145\|CRISPRCasFinder,CRT	2255505-2255536	32	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	450688-450719	10	0.688
NZ_CP010145_3	3.2\|2255566\|32\|NZ_CP010145\|CRISPRCasFinder,CRT,PILER-CR	2255566-2255597	32	NZ_CP039902	Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence	33041-33072	10	0.688
NZ_CP010145_3	3.2\|2255566\|32\|NZ_CP010145\|CRISPRCasFinder,CRT,PILER-CR	2255566-2255597	32	NZ_CP039893	Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence	217865-217896	10	0.688
NZ_CP010145_3	3.2\|2255566\|32\|NZ_CP010145\|CRISPRCasFinder,CRT,PILER-CR	2255566-2255597	32	NZ_KY000025	Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence	208000-208031	10	0.688
NZ_CP010145_3	3.2\|2255566\|32\|NZ_CP010145\|CRISPRCasFinder,CRT,PILER-CR	2255566-2255597	32	NZ_KY000029	Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence	208000-208031	10	0.688
NZ_CP010145_3	3.9\|2255993\|32\|NZ_CP010145\|CRISPRCasFinder,CRT,PILER-CR	2255993-2256024	32	NZ_AP018282	Chondrocystis sp. NIES-4102 plasmid plasmid1 DNA, complete genome	109485-109516	11	0.656

1. spacer 1.1|376033|40|NZ_CP010145|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

acagcacagcggggggaatttcaagaatgacccgcagcgc	CRISPR spacer
acagcacagcgggggtaatttcaagaatgacccgcagcgc	Protospacer
*************** ************************

2. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019314 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence) position: , mismatch: 6, identity: 0.812

-gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
gagattgt-cgccctgttgggcgagaacggtgc	Protospacer
 .*.**** ******* *******.*******

3. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

-gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
gaggacgt-tgccctggtcggcgaagacggtgg	Protospacer
 .** .** .******** ******.*******

4. spacer 3.6|2255810|32|NZ_CP010145|CRISPRCasFinder,CRT,PILER-CR matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

cgccgcggactcacgagcaggccatcacagac-	CRISPR spacer
aggcgcgaactgacgagcaggccatc-cacgcg	Protospacer
 * ****.*** ************** ** .*

5. spacer 2.5|2239792|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaaacgcttcctctacattctctttttc	Protospacer
  ..*   *****.****** ***********

6. spacer 2.5|2239792|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to KY579375 (Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaatcgctttctctactttctctttgtc	Protospacer
  ..*  .************.******** **

7. spacer 2.5|2239792|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to EU030939 (Sulfolobus spindle-shaped virus 5, complete genome) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
aagaaaatcgctttctctactttctctttgtc	Protospacer
  ..*  .************.******** **

8. spacer 2.5|2239792|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to JF412294 (EBPR podovirus 1, partial sequence) position: , mismatch: 9, identity: 0.719

ccagattccgctttctctaccttctctttttc	CRISPR spacer
gccttcgctgctttctcggccttctctttttc	Protospacer
 *   . *.******** .*************

9. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020898 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

10. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013555 (Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

11. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020950 (Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

12. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013587 (Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

13. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
aaggtcaccgccctgatcggcgaaaacggtgc	Protospacer
..* *   *******.* *************

14. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013598 (Rhizobium sp. N741 plasmid pRspN741c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

15. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013578 (Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

16. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013544 (Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

17. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013566 (Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

18. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013502 (Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

19. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013508 (Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

20. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013519 (Rhizobium sp. N113 plasmid pRspN113b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

21. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013572 (Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

22. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013492 (Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

23. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013497 (Rhizobium sp. N621 plasmid pRspN621b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

24. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013592 (Rhizobium sp. N871 plasmid pRspN871b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

25. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to CP007643 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

26. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NC_010996 (Rhizobium etli CIAT 652 plasmid pB, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

27. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 9, identity: 0.719

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
atcgtctgcgccctggtgggcgaacgcggacg	Protospacer
.   * ****************** .***  *

28. spacer 3.1|2255505|32|NZ_CP010145|CRISPRCasFinder,CRT matches to MK249151 (Blackfly microvirus SF02 isolate 049, complete genome) position: , mismatch: 9, identity: 0.719

ttttgtgccctggcgttttgctggctctcgcg	CRISPR spacer
atttgttccctggcgttttgttgggacatggc	Protospacer
 ***** *************.***  * .*

29. spacer 2.6|2239853|32|NZ_CP010145|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gggttgtgcgccctggtgggcgaaaacggtgg	CRISPR spacer
ttccctgccgccctggttggcgaatacggtgg	Protospacer
   ..   ********* ****** *******

30. spacer 3.1|2255505|32|NZ_CP010145|CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttttgtgccctggcgttttgctggctctcgcg	CRISPR spacer
accggtgccctggcgctttgcaggctccttcc	Protospacer
 .. ***********.***** *****.. *

31. spacer 3.2|2255566|32|NZ_CP010145|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039902 (Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

32. spacer 3.2|2255566|32|NZ_CP010145|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039893 (Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

33. spacer 3.2|2255566|32|NZ_CP010145|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000025 (Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

34. spacer 3.2|2255566|32|NZ_CP010145|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY000029 (Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tttgccgctgtcagcattgctggcgcgtaata	CRISPR spacer
ctggccgctgtcgccattgctggcgccatgct	Protospacer
.* *********. ************   ..

35. spacer 3.9|2255993|32|NZ_CP010145|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018282 (Chondrocystis sp. NIES-4102 plasmid plasmid1 DNA, complete genome) position: , mismatch: 11, identity: 0.656

ggaccaaatacccgtccctcaatccacgccgt	CRISPR spacer
tccttctttacccgtacctcaatccactccgc	Protospacer
   ..   ******* *********** ***.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

151897 : 220785

Salmonella_phage(70.83%)

tail,lysis,terminase,head,capsid,plate,integrase,portal

attL 143718:143732|attR 222192:222206

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
143718:143732	attL	NA	NA	NA	NA
WP_000290937.1\|151897_152950_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
WP_073511453.1\|153023_154793_-	AAA family ATPase	NA	NA	NA	NA
WP_073511454.1\|154836_155775_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	4.0e-33	39.7
WP_000188448.1\|155862_156084_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|156116_156626_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956192.1\|156633_156930_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.9e-21	88.5
WP_000996717.1\|157047_157389_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_001244224.1\|157456_157690_+	DUF2732 family protein	E5G6L6	Salmonella_phage	1.9e-32	97.4
WP_073511455.1\|157689_157917_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	1.7e-35	97.3
WP_073511456.1\|157913_158771_+	DNA adenine methylase	E5G6L8	Salmonella_phage	6.6e-160	96.5
WP_073511458.1\|158767_161182_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.4
WP_001154434.1\|161334_161523_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_001217575.1\|161533_161767_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_073511460.1\|162115_163177_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_063082208.1\|163214_164240_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	89.2
WP_073511461.1\|164239_166006_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.3
WP_073511463.1\|166148_166982_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	84.8
WP_021523864.1\|166998_168054_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.4e-180	92.3
WP_073511464.1\|168057_168708_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.5e-111	95.8
WP_028985766.1\|168803_169268_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	9.3e-76	89.0
WP_000868192.1\|169267_169471_+\|tail	tail protein X	E5G6M9	Salmonella_phage	6.8e-31	91.0
WP_000171568.1\|169474_169690_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_001069909.1\|169670_170183_+	lysozyme	E5G6N1	Salmonella_phage	3.1e-88	92.3
WP_000727856.1\|170184_170562_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	3.9e-16	40.0
WP_073511467.1\|170558_170987_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.2e-47	78.7
WP_001039944.1\|171082_171514_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	4.4e-72	93.7
WP_073511469.1\|171506_171953_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.9e-62	84.9
WP_073511470.1\|172021_172600_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	6.8e-92	85.4
WP_064485169.1\|172596_172956_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	3.6e-51	86.6
WP_064485170.1\|172942_173851_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	4.1e-144	91.1
WP_001518816.1\|173843_174449_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.2e-109	92.0
WP_073511472.1\|174445_176029_+\|tail	phage tail protein	A0A0F7LDR4	Escherichia_phage	7.6e-85	52.5
WP_000994386.1\|176028_176442_+\|tail	tail assembly chaperone	U5P0S4	Shigella_phage	1.5e-21	74.3
WP_021534461.1\|176548_177721_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.3e-203	90.0
WP_064485171.1\|177730_178246_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	3.7e-89	94.7
WP_053289807.1\|178300_178603_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	1.8e-40	89.0
WP_000763311.1\|178617_178737_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_073511474.1\|178729_181807_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
WP_000980394.1\|181803_182289_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.7e-67	81.2
WP_064485173.1\|182285_183386_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.5e-177	88.3
WP_000972391.1\|183476_183695_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_001024867.1\|183930_185616_-	aspartate:alanine antiporter	NA	NA	NA	NA
WP_000681108.1\|185885_186263_+	inner membrane protein YbjM	NA	NA	NA	NA
WP_001195240.1\|186292_186550_-	glutaredoxin 1	A0A2I7SAE2	Vibrio_phage	8.6e-23	61.9
WP_001201560.1\|186709_186997_+	DUF1418 family protein	NA	NA	NA	NA
WP_000684321.1\|188540_189443_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
WP_000203025.1\|189530_190007_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_000126072.1\|190358_191471_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_000996025.1\|191565_192699_+	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	5.0e-30	34.4
WP_000105430.1\|192708_193662_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_001061657.1\|193658_194504_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_000389260.1\|194563_195052_+	YbjO family protein	NA	NA	NA	NA
WP_001149733.1\|195092_196220_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	3.5e-28	27.6
WP_001295905.1\|196394_197126_-	ABC transporter substrate-binding protein ArtJ	NA	NA	NA	NA
WP_000464491.1\|197417_198086_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_001001691.1\|198085_198802_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_000756569.1\|198808_199540_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000027205.1\|199557_200286_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
WP_001270740.1\|200503_201019_-	lipoprotein	NA	NA	NA	NA
WP_001160737.1\|201144_201468_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_001255144.1\|201464_202295_+	N-acetylmuramoyl-L-alanine amidase AmiD	A0A1B0UZW5	Roseobacter_phage	5.7e-07	30.0
WP_001338420.1\|202291_203305_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_001136554.1\|203403_204834_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000566372.1\|204844_205846_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_000815350.1\|205882_207601_-	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.0e-31	24.1
WP_000178677.1\|207733_208702_-	NADH oxidoreductase	NA	NA	NA	NA
WP_000458817.1\|208713_210366_-	hydroxylamine reductase	NA	NA	NA	NA
WP_000491142.1\|210509_211409_-	L-lysine exporter LysO	NA	NA	NA	NA
WP_001297311.1\|211903_212599_-	aquaporin Z	NA	NA	NA	NA
WP_000599806.1\|213024_214683_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_001355621.1\|214679_215636_-	VirK/YbjX family protein	NA	NA	NA	NA
WP_000746460.1\|215786_216902_+	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_000188180.1\|216898_218845_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.1e-37	40.1
WP_000410785.1\|218917_219142_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
WP_000092880.1\|219546_220785_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	3.7e-127	53.5
222192:222206	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1492059 : 1556980

Escherichia_phage(44.74%)

tail,lysis,holin,terminase,head,capsid,transposase,plate,portal,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000675150.1\|1492059_1493463_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	3.0e-32	29.0
WP_000137877.1\|1493459_1494182_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	3.7e-31	33.6
WP_038999770.1\|1494372_1494705_+	YegP family protein	NA	NA	NA	NA
WP_000476014.1\|1494851_1496213_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.9e-217	99.7
WP_000468308.1\|1496485_1496704_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_001461865.1\|1496785_1497949_-	phage late control D family protein	A0A0F7LDZ2	Escherichia_phage	1.6e-204	99.0
WP_000978897.1\|1497948_1498428_-\|tail	phage tail protein	O64315	Escherichia_phage	5.1e-85	100.0
WP_015979590.1\|1498442_1500890_-\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	98.5
WP_000785970.1\|1500882_1501002_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001031307.1\|1501034_1501310_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.2e-40	98.9
WP_001251408.1\|1501366_1501885_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001286743.1\|1501897_1503088_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.1e-224	99.5
WP_040072566.1\|1503478_1505065_+	hypothetical protein	P79669	Escherichia_phage	6.4e-310	99.8
WP_001164113.1\|1505458_1505986_-\|tail	tail fiber assembly protein	A0A0A7NRZ7	Enterobacteria_phage	2.3e-91	95.4
WP_073511527.1\|1505989_1507999_-\|tail	phage tail protein	Q7Y4D4	Escherichia_virus	0.0e+00	97.8
WP_001285325.1\|1508009_1508540_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	2.3e-102	100.0
WP_040072569.1\|1508532_1509441_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	1.3e-161	99.3
WP_000127163.1\|1509445_1509793_-	GPW/gp25 family protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
WP_001093716.1\|1509789_1510425_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	2.0e-113	99.1
WP_015979586.1\|1510508_1511294_+	hypothetical protein	NA	NA	NA	NA
WP_001297845.1\|1511365_1511818_-	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	5.3e-76	98.7
WP_073511528.1\|1511810_1512278_-\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	7.4e-81	98.1
WP_001300730.1\|1512240_1512414_-	hypothetical protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
WP_015979583.1\|1512385_1512811_-\|lysis	LysB family phage lysis regulatory protein	U5N3W5	Enterobacteria_phage	1.4e-65	95.0
WP_050939240.1\|1512798_1513224_-	hypothetical protein	A0A0F7LBP4	Escherichia_phage	2.8e-58	95.0
WP_001144101.1\|1513238_1513736_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_000123124.1\|1513735_1514017_-\|holin	phage holin family protein	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
WP_000846399.1\|1514020_1514224_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000988636.1\|1514223_1514733_-\|head	head completion/stabilization protein	A0A0F7LDJ1	Escherichia_phage	8.6e-91	100.0
WP_001298859.1\|1515562_1517104_+\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001016257.1\|1517118_1517865_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_001248558.1\|1518165_1519239_-\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	6.7e-202	100.0
WP_001085953.1\|1519297_1520152_-\|capsid	GPO family capsid scaffolding protein	Q778Z1	Enterobacteria_phage	4.6e-137	100.0
WP_073511530.1\|1520325_1522098_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.7
WP_015979580.1\|1522097_1523132_+\|portal	phage portal protein	Q858W8	Yersinia_virus	2.1e-200	99.4
WP_000675356.1\|1523465_1524350_-	DNA adenine methylase	NA	NA	NA	NA
WP_073511531.1\|1524419_1525925_-	hypothetical protein	Q858T2	Yersinia_virus	1.5e-05	28.3
WP_000807356.1\|1529282_1530182_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.7e-12	29.0
WP_000178552.1\|1530263_1531043_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000844219.1\|1531142_1532183_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000823270.1\|1533590_1533875_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000182899.1\|1533905_1534358_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_000853882.1\|1534367_1535630_-	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_001307281.1\|1535658_1536513_-	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000129551.1\|1536820_1537873_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000858484.1\|1538129_1539407_+	nucleoside permease	NA	NA	NA	NA
WP_032247697.1\|1539403_1540408_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	2.4e-12	28.7
WP_032247696.1\|1540404_1541370_+	sugar kinase	NA	NA	NA	NA
WP_032247695.1\|1541343_1542090_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_032247694.1\|1542141_1542960_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	1.9e-23	38.0
WP_000822274.1\|1543024_1543825_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001195564.1\|1543821_1544610_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000019944.1\|1544832_1545105_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000153067.1\|1547606_1547945_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_073511532.1\|1548026_1549061_-	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_000945454.1\|1549076_1551557_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000677393.1\|1551572_1552247_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000830456.1\|1552326_1552869_-	fimbrial protein	NA	NA	NA	NA
WP_001324851.1\|1553161_1553443_-	YehE family protein	NA	NA	NA	NA
WP_001005448.1\|1553705_1554815_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001300883.1\|1554946_1556980_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.3e-54	27.6

DBSCAN-SWA_3

1565224 : 1574666

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001351788.1\|1565224_1566361_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	8.5e-163	97.7
WP_073511536.1\|1566357_1568358_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.0
WP_001295429.1\|1568482_1568944_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001295430.1\|1568984_1569455_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|1569501_1570221_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295431.1\|1570217_1571903_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_001240401.1\|1572124_1572856_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001216963.1\|1572915_1573023_+	protein YohO	NA	NA	NA	NA
WP_000783120.1\|1573003_1573735_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569357.1\|1573739_1574666_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	1.7e-23	30.8

DBSCAN-SWA_4

2034868 : 2141529

104

Enterobacteria_phage(31.67%)

tail,lysis,terminase,protease,transposase,integrase,portal,tRNA

attL 2097176:2097191|attR 2126172:2126187

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001298974.1\|2034868_2035606_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA
WP_000219193.1\|2035737_2037072_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_000365855.1\|2037280_2038162_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000189206.1\|2038264_2038852_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627807.1\|2038906_2039290_-	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	1.4e-32	72.0
WP_001262723.1\|2039594_2040284_+	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	2.1e-55	52.1
WP_000997411.1\|2040331_2041369_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|2041575_2041995_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_000138184.1\|2042063_2042762_+\|tRNA	tRNA-uridine aminocarboxypropyltransferase	NA	NA	NA	NA
WP_000082949.1\|2042793_2045454_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949265.1\|2045567_2046923_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001300818.1\|2046968_2047292_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000841103.1\|2047288_2048587_-	alpha-ketoglutarate permease	Q6JIH2	Burkholderia_virus	1.3e-45	32.2
WP_001235102.1\|2054457_2057031_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	2.6e-127	35.3
WP_000040149.1\|2057160_2057892_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079107.1\|2057888_2058869_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197686.1\|2059003_2059741_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178456.1\|2060011_2060353_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_001386991.1\|2060456_2060504_+	pheA operon leader peptide PheL	NA	NA	NA	NA
WP_000200116.1\|2060602_2061763_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000225221.1\|2061805_2062927_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168044.1\|2062937_2064008_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	4.0e-90	51.2
WP_000976004.1\|2064217_2064583_+	DUF2799 domain-containing protein	NA	NA	NA	NA
WP_001212391.1\|2064732_2065251_+	YfiR family protein	NA	NA	NA	NA
WP_000969032.1\|2065240_2066467_+	diguanylate cyclase DgcN	NA	NA	NA	NA
WP_000589828.1\|2066482_2066965_+	OmpA family protein	NA	NA	NA	NA
WP_000065253.1\|2067041_2067389_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000264777.1\|2067430_2068198_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043335.1\|2068228_2068777_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256450.1\|2068795_2069044_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460035.1\|2069180_2070542_-	signal recognition particle protein	NA	NA	NA	NA
WP_001407013.1\|2070708_2071500_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_010723175.1\|2071520_2072807_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001296310.1\|2072861_2073455_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059169.1\|2073577_2074456_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880910.1\|2074541_2076203_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203437.1\|2076351_2076693_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001117838.1\|2076754_2077045_-	RnfH family protein	NA	NA	NA	NA
WP_000600190.1\|2077034_2077511_-	type II toxin-antitoxin system toxin RatA	NA	NA	NA	NA
WP_000162574.1\|2077642_2078125_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8
WP_012602456.1\|2078930_2080145_+	type II restriction endonuclease	E5E3X4	Burkholderia_phage	7.9e-34	38.6
WP_072095179.1\|2080179_2081583_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	4.0e-106	50.1
WP_000355482.1\|2082019_2082793_+	hypothetical protein	G9IA57	Pseudomonas_phage	4.1e-36	37.7
WP_072195243.1\|2082862_2082991_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.7e-11	84.6
WP_073511541.1\|2083045_2086825_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A2D1UII2	Escherichia_phage	0.0e+00	80.2
WP_073511542.1\|2086889_2087489_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	2.9e-106	95.0
WP_073511543.1\|2087557_2091037_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.1
WP_001309913.1\|2091097_2091745_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.5e-111	96.7
WP_073511544.1\|2091642_2092386_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.9e-147	95.5
WP_001152385.1\|2092391_2093090_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	6.0e-135	100.0
WP_073511545.1\|2093099_2093429_-\|tail	phage tail protein	A0A291AWW9	Escherichia_phage	5.1e-60	98.2
WP_073511546.1\|2093428_2096494_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.6
WP_001161009.1\|2096465_2096795_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_001440689.1\|2096803_2097190_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	6.1e-65	99.2
2097176:2097191	attL	NA	NA	NA	NA
WP_000211109.1\|2097250_2097994_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	7.8e-133	100.0
WP_001079398.1\|2098005_2098407_-\|tail	tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
WP_000677106.1\|2098403_2098982_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	4.2e-102	100.0
WP_001283144.1\|2098993_2099269_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	8.6e-45	98.9
WP_064773609.1\|2099261_2099585_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	1.5e-51	99.1
WP_001136590.1\|2099671_2101699_-\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	0.0e+00	99.5
WP_000985945.1\|2101643_2103152_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	7.8e-289	99.8
WP_001072975.1\|2103151_2103364_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_073511547.1\|2103360_2105463_-\|terminase	phage terminase large subunit family protein	K7PH40	Enterobacteria_phage	0.0e+00	99.0
WP_000373425.1\|2105462_2105957_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	9.9e-84	100.0
WP_001139681.1\|2106632_2106785_-	hypothetical protein	K7PKL2	Enterobacteria_phage	4.7e-21	96.0
WP_029700804.1\|2106772_2107240_-\|lysis	lysis protein	K7PH77	Enterobacteria_phage	6.1e-75	97.4
WP_001135250.1\|2107236_2107734_-	lysozyme RrrD	A0A291AWW2	Escherichia_phage	4.5e-92	100.0
WP_000839596.1\|2107733_2107949_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_073511548.1\|2108016_2109069_-	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	6.1e-208	99.7
WP_000917724.1\|2109219_2109423_-	hypothetical protein	A0A291AWX6	Escherichia_phage	6.1e-32	100.0
WP_000868396.1\|2109687_2110614_+	hypothetical protein	NA	NA	NA	NA
WP_001531322.1\|2110600_2111149_+	hypothetical protein	NA	NA	NA	NA
WP_029700797.1\|2111161_2111503_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.6e-56	89.4
WP_001360050.1\|2111520_2112510_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.5e-195	100.0
WP_001061404.1\|2112517_2113315_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	5.2e-151	100.0
WP_000767113.1\|2113334_2113724_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_000210155.1\|2113720_2114047_-	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	7.8e-53	98.1
WP_000066917.1\|2114043_2114697_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
WP_072165319.1\|2114696_2115191_-	PerC family transcriptional regulator	U5P0U0	Shigella_phage	1.9e-87	97.6
WP_021527492.1\|2115187_2116006_-	helix-turn-helix domain-containing protein	Q8SBF1	Shigella_phage	3.1e-122	99.6
WP_001504950.1\|2116002_2116239_-	hypothetical protein	A0A291AX25	Escherichia_phage	1.9e-37	97.4
WP_063084591.1\|2116231_2117068_-	ash family protein	Q8SBF3	Shigella_phage	6.0e-150	98.9
WP_000521508.1\|2117064_2117616_-	hypothetical protein	A0A291AWW8	Escherichia_phage	4.5e-101	100.0
WP_000649477.1\|2117659_2117860_-	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	7.9e-32	100.0
WP_000848749.1\|2117950_2118625_+	LexA family transcriptional regulator	U5P0T5	Shigella_phage	6.0e-132	99.6
WP_000008160.1\|2119369_2119906_+	5'-deoxynucleotidase	U5P0T3	Shigella_phage	6.9e-99	97.8
WP_001242730.1\|2119896_2120259_+	phage protein	K7PH61	Enterobacteria_phage	6.8e-66	97.5
WP_001331173.1\|2120255_2120471_+	hypothetical protein	K7PLX1	Enterobacteria_phage	1.2e-14	65.1
WP_001331174.1\|2120530_2120737_+	hypothetical protein	I6PBM8	Cronobacter_phage	6.9e-23	70.3
WP_063082126.1\|2120697_2121864_+	DUF3596 domain-containing protein	I6PDJ1	Cronobacter_phage	5.7e-146	66.5
WP_063082127.1\|2121876_2122506_-	hypothetical protein	NA	NA	NA	NA
WP_032083255.1\|2122507_2122849_-	STAS-like domain-containing protein	NA	NA	NA	NA
WP_032083256.1\|2122841_2123765_-	hypothetical protein	NA	NA	NA	NA
WP_000113815.1\|2124141_2125383_+\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	4.5e-101	47.3
WP_001317263.1\|2125521_2126616_-	hypothetical protein	NA	NA	NA	NA
2126172:2126187	attR	NA	NA	NA	NA
WP_000532680.1\|2129050_2130349_-	hypothetical protein	NA	NA	NA	NA
WP_085947771.1\|2130366_2131529_-\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.1e-51	40.6
WP_000871156.1\|2131556_2131790_-	hypothetical protein	NA	NA	NA	NA
WP_000963924.1\|2132257_2136109_+	hypothetical protein	NA	NA	NA	NA
WP_000443183.1\|2136154_2136901_+	hypothetical protein	NA	NA	NA	NA
WP_000925811.1\|2136887_2137067_+	hypothetical protein	NA	NA	NA	NA
WP_000655916.1\|2137334_2138216_-	hypothetical protein	NA	NA	NA	NA
WP_001367084.1\|2138329_2138569_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	2.5e-08	49.2
WP_085950812.1\|2140316_2141529_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.4e-99	56.8

DBSCAN-SWA_5

2216021 : 2223161

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272898.1\|2216021_2218583_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.3e-30	20.6
WP_001141330.1\|2218688_2219345_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	4.3e-50	46.7
WP_001297141.1\|2219395_2220163_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	3.3e-70	56.7
WP_000847985.1\|2220358_2221267_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_000590392.1\|2221263_2222526_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_001278994.1\|2222522_2223161_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_6

4602272 : 4667929

Enterobacteria_phage(54.84%)

lysis,tail,terminase,head,capsid,protease,transposase,integrase,portal,tRNA

attL 4612434:4612480|attR 4659403:4659449

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021548567.1\|4602272_4603658_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	34.8
WP_001143552.1\|4603693_4604215_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_000190288.1\|4604322_4604535_-	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_000729154.1\|4604536_4605403_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.7e-30	37.5
WP_001315309.1\|4605883_4606426_+	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
WP_000988375.1\|4606645_4607338_+	type 1 fimbria chaperone FimC	NA	NA	NA	NA
WP_001306954.1\|4607368_4609978_+	fimbrial biogenesis usher protein	NA	NA	NA	NA
WP_000691056.1\|4609990_4610998_+	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
WP_001250422.1\|4611008_4611524_+	fimbria assembly protein	NA	NA	NA	NA
WP_000805428.1\|4611526_4612159_-	fimbria biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
4612434:4612480	attL	NA	NA	NA	NA
WP_000051902.1\|4612493_4613657_-\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.0e-200	86.6
WP_000488407.1\|4613855_4614134_-	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000763385.1\|4614181_4614400_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	7.5e-36	100.0
WP_001443983.1\|4614498_4614780_-	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	7.2e-47	98.9
WP_000548537.1\|4614790_4614982_-	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
WP_000149544.1\|4614954_4615137_-	DUF1317 domain-containing protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
WP_000611716.1\|4615133_4615814_-	YqaJ viral recombinase family protein	B6DZ61	Enterobacteria_phage	3.0e-131	98.2
WP_000100847.1\|4615810_4616596_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995439.1\|4616601_4616898_-	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_000372941.1\|4616972_4617116_-	host cell division inhibitory peptide Kil	A0A1I9LJN2	Stx_converting_phage	1.2e-18	100.0
WP_001198861.1\|4617084_4617249_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_000213971.1\|4617493_4617673_-	antirestriction Ral family protein	M1FQU1	Enterobacteria_phage	6.6e-30	100.0
WP_000281856.1\|4617939_4618422_+	superinfection exclusion B family protein	A4KWR7	Enterobacteria_phage	1.1e-87	100.0
WP_170992679.1\|4618422_4618800_-	antitermination protein	J3JZZ6	Escherichia_phage	6.6e-56	99.1
WP_000191544.1\|4619180_4619942_-	KilA-N domain-containing protein	A0A1L2BWW1	Bacteriophage	1.1e-09	46.3
WP_001274755.1\|4619973_4620687_-	LexA family transcriptional regulator	A4KWS8	Enterobacteria_phage	2.1e-127	100.0
WP_000437875.1\|4620787_4620988_+	hypothetical protein	A4KWT7	Enterobacteria_phage	4.3e-30	100.0
WP_000251069.1\|4621106_4621400_+	lambda phage CII family protein	A2SY75	Escherichia_phage	3.7e-46	100.0
WP_000185505.1\|4621432_4622332_+	replication protein	A0A0K2FJ31	Enterobacteria_phage	3.8e-174	100.0
WP_000788837.1\|4622328_4623030_+	Replication protein P	A0A0P0ZD31	Stx2-converting_phage	7.1e-128	99.1
WP_000145931.1\|4623026_4623317_+	protein ren	A0A1I9LJP5	Stx_converting_phage	9.6e-47	100.0
WP_000736903.1\|4623390_4623831_+	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.0e-81	100.0
WP_000153280.1\|4623827_4624355_+	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
WP_001254223.1\|4624351_4624528_+	NinE family protein	K7PHE6	Enterobacteria_phage	1.4e-27	98.3
WP_000386643.1\|4624530_4624872_+	DUF2591 family protein	Q76H72	Enterobacteria_phage	1.6e-61	96.5
WP_001099522.1\|4625078_4625441_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	5.6e-60	96.5
WP_000971068.1\|4625437_4625578_+	YlcG family protein	K7PHH3	Enterobacteria_phage	5.5e-08	67.4
WP_001204791.1\|4625663_4626047_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.4e-55	83.3
WP_000737266.1\|4626236_4627334_-	porin OmpC	Q1MVN1	Enterobacteria_phage	2.2e-155	76.5
WP_000839596.1\|4627922_4628138_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_001135277.1\|4628137_4628635_+	lysozyme RrrD	M1FJA0	Enterobacteria_phage	5.4e-90	97.0
WP_001228695.1\|4628851_4629034_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_000738423.1\|4629124_4629418_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_001415975.1\|4629777_4629972_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	4.3e-27	96.9
WP_000453587.1\|4630360_4630906_+	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001027283.1\|4630880_4632806_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
WP_000198149.1\|4632802_4633009_+	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001369921.1\|4633005_4634607_+\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.9e-309	98.9
WP_000123273.1\|4634587_4635907_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.6e-232	98.2
WP_001369910.1\|4635916_4636249_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.1e-54	98.2
WP_000063218.1\|4636304_4637330_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.4e-188	97.7
WP_000158868.1\|4637371_4637767_+	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_000753019.1\|4637778_4638132_+\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	2.6e-62	98.3
WP_000975051.1\|4638143_4638722_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	3.5e-80	97.9
WP_000683105.1\|4638718_4639114_+\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_001345558.1\|4639121_4639862_+\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	2.0e-128	96.7
WP_000479154.1\|4639877_4640300_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	9.7e-72	99.3
WP_000459458.1\|4640281_4640716_+\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.5e-64	99.2
WP_000840258.1\|4640708_4643270_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.6
WP_000847379.1\|4643266_4643596_+\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_001152639.1\|4643595_4644294_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
WP_000194780.1\|4644299_4645043_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
WP_071532093.1\|4644979_4645612_+\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.4e-95	99.0
WP_000515725.1\|4645672_4649086_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.2
WP_001233071.1\|4649156_4649756_+	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	4.4e-110	98.5
WP_000279163.1\|4649820_4652781_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	4.0e-55	53.7
WP_000885616.1\|4652780_4653356_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_000086514.1\|4653453_4654044_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	7.3e-25	38.8
WP_000836768.1\|4654360_4654594_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_120795384.1\|4654662_4654776_-	hypothetical protein	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000239874.1\|4655141_4655810_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001226378.1\|4656355_4657840_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001201825.1\|4658026_4658980_-\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001177469.1\|4659492_4660254_-	DNA-binding transcriptional regulator EnvY	NA	NA	NA	NA
4659403:4659449	attR	NA	NA	NA	NA
WP_001224567.1\|4660436_4661327_-	DUF4434 family protein	NA	NA	NA	NA
WP_000662366.1\|4661327_4664300_-	bacteriophage adsorption protein NfrA	NA	NA	NA	NA
WP_001614159.1\|4664286_4666524_-	phage adsorption protein NrfB	NA	NA	NA	NA
WP_000420925.1\|4666792_4667929_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010146

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 36887

Escherichia_phage(53.85%)

terminase,integrase,transposase

attL 19684:19743|attR 41359:42127

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_073511583.1\|628_1504_+	CTX-M family class A extended-spectrum beta-lactamase	A0A1B0VBP7	Salmonella_phage	2.0e-151	98.6
WP_013362812.1\|1538_2507_+\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.6e-186	100.0
WP_001067855.1\|4828_5533_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_050858703.1\|6144_7032_+	hypothetical protein	Q71TI8	Escherichia_phage	2.4e-157	99.7
WP_050858702.1\|7047_7407_+	hypothetical protein	A0A1B0V7L1	Salmonella_phage	2.8e-64	100.0
WP_000021766.1\|7479_7986_+	hypothetical protein	A0A1B0VAK0	Salmonella_phage	4.8e-94	100.0
WP_016231376.1\|8250_11367_-	HsdR family type I site-specific deoxyribonuclease	A0A220A398	Liberibacter_phage	4.4e-28	24.3
WP_073511585.1\|11488_12097_-	restriction endonuclease subunit S	NA	NA	NA	NA
WP_016231378.1\|12112_13669_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.9e-105	43.1
WP_001190712.1\|13851_14073_+	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_001216045.1\|14072_14453_+	type II toxin-antitoxin system death-on-curing family toxin	Q71T66	Escherichia_phage	1.9e-63	100.0
WP_000113019.1\|14457_14637_+	hypothetical protein	Q71TH5	Escherichia_phage	2.7e-23	98.3
WP_016231380.1\|14664_15708_+	DUF968 domain-containing protein	A0A1B0VBU2	Salmonella_phage	2.0e-206	98.8
WP_050858701.1\|15796_16249_+	Late promoter-activating protein	Q71T63	Escherichia_phage	4.3e-78	98.7
WP_000124150.1\|16887_18372_+\|terminase	terminase	Q71T61	Escherichia_phage	1.5e-292	100.0
WP_000611656.1\|18396_19248_-	hypothetical protein	A0A077SLM8	Escherichia_phage	6.1e-158	99.6
WP_000874156.1\|19358_19568_-	hypothetical protein	A0A077SK26	Escherichia_phage	1.8e-31	100.0
19684:19743	attL	NA	NA	NA	NA
WP_000542335.1\|21874_22096_+	hypothetical protein	Q5QBN7	Enterobacteria_phage	1.3e-35	98.6
WP_050858708.1\|22103_23135_+\|integrase	tyrosine-type recombinase/integrase	Q71TG5	Escherichia_phage	1.9e-193	99.1
WP_001224243.1\|23185_23497_+	hypothetical protein	Q5XLQ4	Enterobacteria_phage	1.3e-44	94.2
WP_050858709.1\|23744_24305_+	Ref family protein	Q71TG3	Escherichia_phage	1.6e-98	96.2
WP_001615576.1\|24351_24906_-	hypothetical protein	NA	NA	NA	NA
WP_050858710.1\|25188_25833_+	hypothetical protein	A0A1B0VAG4	Salmonella_phage	3.3e-95	85.4
WP_050858711.1\|25886_26576_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000747846.1\|27569_27818_-	hypothetical protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
WP_023352064.1\|27814_28255_-	hypothetical protein	Q71TR9	Escherichia_phage	3.8e-79	99.3
WP_001139206.1\|30718_30970_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_000222771.1\|30966_31254_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	4.5e-20	50.5
WP_000896262.1\|31543_31744_-	DUF839 domain-containing protein	NA	NA	NA	NA
WP_001038839.1\|32113_35611_-	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	3.5e-98	34.8
WP_085959875.1\|35658_36887_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	6.3e-172	96.0
41359:42127	attR	NA	NA	NA	NA

DBSCAN-SWA_2

42973 : 80656

Escherichia_phage(61.54%)

plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000926346.1\|42973_43855_-	hypothetical protein	Q71TC9	Escherichia_phage	6.3e-174	99.7
WP_000523980.1\|43869_44481_-	hypothetical protein	Q71TN8	Escherichia_phage	2.9e-109	99.5
WP_000188920.1\|44491_45058_-	hypothetical protein	A0A077SK12	Escherichia_phage	6.6e-100	99.5
WP_001033469.1\|45138_45678_-	DUF5384 family protein	A0A077SL46	Escherichia_phage	1.8e-46	100.0
WP_000039791.1\|45681_46194_-	hypothetical protein	A0A077SK39	Escherichia_phage	4.5e-55	100.0
WP_000245703.1\|46815_47037_+	host cell division inhibitor Icd-like protein	Q38557	Escherichia_phage	3.6e-38	97.3
WP_032167064.1\|47033_48068_+	phage antirepressor KilAC domain-containing protein	A0A077SLI1	Escherichia_phage	1.7e-186	98.8
WP_001187871.1\|48231_49032_+	phage antirepressor KilAC domain-containing protein	Q1MVK4	Enterobacteria_phage	5.4e-148	99.6
WP_032167063.1\|49061_49907_+	hypothetical protein	Q1MVK3	Enterobacteria_phage	1.8e-149	98.2
WP_032167114.1\|49957_50203_+	hypothetical protein	A0A1B0VDM5	Salmonella_phage	7.7e-13	45.0
WP_001313475.1\|50384_50540_+	type I toxin-antitoxin system toxin HokD	A0A1I9LJU7	Stx_converting_phage	1.0e-15	92.2
WP_000944483.1\|50894_51887_-	MazG-like family protein	NA	NA	NA	NA
WP_000509939.1\|52184_52694_-	hypothetical protein	Q1MVJ9	Enterobacteria_phage	1.3e-91	100.0
WP_000035301.1\|52705_53287_-	hypothetical protein	Q1MVJ8	Enterobacteria_phage	7.3e-102	97.4
WP_024236438.1\|53322_54138_-	hypothetical protein	A0A1B0V835	Salmonella_phage	2.4e-111	98.5
WP_050858685.1\|54147_55737_-	hypothetical protein	A0A077SLN8	Escherichia_phage	1.4e-304	99.4
WP_000067710.1\|55797_57504_-	hypothetical protein	Q71TM1	Escherichia_phage	0.0e+00	100.0
WP_050858684.1\|57770_58736_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	6.3e-167	99.1
WP_000817632.1\|58732_59938_-	AAA family ATPase	Q1MVJ3	Enterobacteria_phage	2.0e-226	100.0
WP_001076427.1\|60337_61198_-	replication protein RepA	Q71TL8	Escherichia_phage	4.7e-158	100.0
WP_001281125.1\|61516_61909_-	hypothetical protein	Q1MVJ1	Enterobacteria_phage	1.2e-71	100.0
WP_000007769.1\|62086_62509_-	hypothetical protein	A0A1B0VCB0	Salmonella_phage	2.7e-58	100.0
WP_050858683.1\|62548_63337_-	hypothetical protein	A0A1B0V830	Salmonella_phage	1.1e-108	90.8
WP_001177860.1\|63799_64084_+	hypothetical protein	Q71TA2	Escherichia_phage	3.5e-49	100.0
WP_050858682.1\|64076_64982_+	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	1.0e-158	96.3
WP_050858680.1\|65188_68266_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A077SL51	Escherichia_phage	0.0e+00	98.4
WP_000467133.1\|69826_70261_+	tellurite resistance TerB family protein	Q1MVI3	Enterobacteria_phage	8.1e-74	100.0
WP_166512916.1\|70260_70425_+	DUF3927 family protein	Q1MVI2	Enterobacteria_phage	1.2e-17	96.3
WP_001276605.1\|70897_72262_+	replicative DNA helicase	O80281	Escherichia_phage	1.8e-252	99.6
WP_001189128.1\|72261_72564_+	hypothetical protein	NA	NA	NA	NA
WP_050858716.1\|72560_73535_+	hypothetical protein	A0A077SL52	Escherichia_phage	5.0e-188	98.8
WP_000535202.1\|73581_74214_-\|plate	baseplate protein	Q71TK2	Escherichia_phage	6.9e-90	100.0
WP_050858715.1\|74206_75223_-	hypothetical protein	A0A077SLQ1	Escherichia_phage	1.3e-191	99.4
WP_000602717.1\|75224_76010_-	hypothetical protein	Q71T90	Escherichia_phage	4.6e-144	99.6
WP_000896801.1\|75996_76725_-	hypothetical protein	A0A077SK19	Escherichia_phage	9.3e-139	100.0
WP_001141908.1\|76728_77946_-	hypothetical protein	A0A077SL53	Escherichia_phage	1.1e-224	100.0
WP_000235786.1\|77955_78333_-	hypothetical protein	Q38620	Escherichia_phage	2.2e-67	100.0
WP_000840930.1\|78479_78725_+	hypothetical protein	A0A1B0VDU5	Salmonella_phage	1.5e-40	100.0
WP_050858714.1\|78727_79306_+	VRR-NUC domain-containing protein	Q71T85	Escherichia_phage	1.5e-107	99.5
WP_000095381.1\|79372_79528_+	hypothetical protein	Q71TJ4	Escherichia_phage	2.7e-19	96.1
WP_000484110.1\|80029_80656_+	norphogenetic protein	Q71T82	Escherichia_phage	6.1e-123	100.0

DBSCAN-SWA_3

86640 : 102353

Escherichia_phage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|86640_87345_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000376616.1\|87462_87666_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|87793_88633_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_072644484.1\|88813_88978_+	cupin domain-containing protein	NA	NA	NA	NA
WP_001067855.1\|90368_91073_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_015344976.1\|91644_94596_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
WP_046788546.1\|94604_95006_+	hypothetical protein	NA	NA	NA	NA
WP_001067784.1\|95090_95795_-\|transposase	IS6-like element IS1006 family transposase	A0A077SL39	Escherichia_phage	1.9e-120	85.8
WP_001447541.1\|96719_97604_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_000214122.1\|97820_99035_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
WP_001255015.1\|99062_99368_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_015344975.1\|99479_100973_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001445143.1\|101003_101255_+	hypothetical protein	NA	NA	NA	NA
WP_001043260.1\|101537_102353_-	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6

DBSCAN-SWA_4

106025 : 106778

Escherichia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_073511589.1\|106025_106778_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.4e-41	44.7

DBSCAN-SWA_5

109901 : 111546

Virus_Rctr41k(50.0%)

integrase

attL 109281:109294|attR 112256:112269

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
109281:109294	attL	NA	NA	NA	NA
WP_000845048.1\|109901_110915_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001389366.1\|111072_111546_+	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
112256:112269	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010145

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010146

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection