CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP010158	Escherichia coli strain D10 plasmid A, complete sequence	0 crisprs	NA	0	1
NZ_CP010157	Escherichia coli strain D10 chromosome, complete genome	6 crisprs	csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG,WYL	16	8
NZ_CP010159	Escherichia coli strain D10 plasmid B, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

41945 : 113235

Macacine_betaherpesvirus(23.08%)

transposase,integrase,protease

attL 35213:35228|attR 90603:90618

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
35213:35228	attL	NA	NA	NA	NA
WP_073507091.1\|41945_42917_+\|transposase	IS110-like element ISEc32 family transposase	Q75QL1	Wolbachia_phage	1.1e-25	32.1
WP_000092896.1\|43177_43390_-	hypothetical protein	NA	NA	NA	NA
WP_001513511.1\|44822_45161_-	hypothetical protein	NA	NA	NA	NA
WP_000817028.1\|45972_46944_-	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	8.8e-169	96.6
WP_001238646.1\|46943_48110_-	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.6e-228	99.7
WP_000715078.1\|49261_50764_-	hypothetical protein	NA	NA	NA	NA
WP_000238252.1\|51381_51831_-	hypothetical protein	A0A222YWI5	Escherichia_phage	5.0e-42	67.1
WP_000190054.1\|51948_52428_+	hypothetical protein	NA	NA	NA	NA
WP_000163251.1\|52867_53530_+	hypothetical protein	NA	NA	NA	NA
WP_000973517.1\|54761_56963_-	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_001312878.1\|57044_58322_-	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_001015721.1\|58318_60061_-	aerobactin synthase IucC	NA	NA	NA	NA
WP_000011907.1\|60060_61008_-	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_000602863.1\|61008_62733_-	aerobactin synthase IucA	NA	NA	NA	NA
WP_000095526.1\|62868_64062_+	MFS transporter	NA	NA	NA	NA
WP_001318207.1\|64441_64822_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	1.9e-26	55.0
WP_000968139.1\|66064_66922_-	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA
WP_073507092.1\|66918_67776_-	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA
WP_000983712.1\|67772_68600_-	iron/manganese ABC transporter ATP-binding protein SitB	A0A1M7XV31	Cedratvirus	6.2e-14	27.0
WP_000949004.1\|68599_69514_-	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA
WP_000361611.1\|72495_73473_+	replication initiation protein	J9Q7H0	Salmonella_phage	4.6e-101	63.9
WP_001066954.1\|73757_74498_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.2e-24	57.6
WP_001312821.1\|74618_74807_-	hypothetical protein	NA	NA	NA	NA
WP_001312822.1\|75180_76083_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_000771475.1\|76151_77261_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000280980.1\|77693_78647_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_001312823.1\|79919_80078_-\|transposase	transposase	NA	NA	NA	NA
WP_162842477.1\|80261_81474_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	2.7e-167	99.0
WP_000928803.1\|82928_84116_+	efflux RND transporter periplasmic adaptor subunit	A0A140XAI1	Dickeya_phage	1.0e-09	55.7
WP_000733250.1\|84112_86053_+	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	1.8e-35	39.0
WP_001312828.1\|86056_87427_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_000974762.1\|88223_89165_-	hypothetical protein	NA	NA	NA	NA
WP_000450495.1\|91425_92619_-	GTP-binding protein	NA	NA	NA	NA
90603:90618	attR	NA	NA	NA	NA
WP_000738422.1\|95698_95992_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_000933675.1\|104143_105373_+	catecholate siderophore esterase IroD	NA	NA	NA	NA
WP_000271276.1\|105457_106414_+	catecholate siderophore esterase IroE	NA	NA	NA	NA
WP_073507094.1\|109101_113235_-\|protease	temperature-sensitive protease autotransporter hemagglutinin Tsh	Q9LA54	Enterobacteria_phage	6.6e-298	41.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010157

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010157_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010157_1

35433-35571

Orphan

Consensus_repeat	Method
CTCATACTGACAGTCAGGTCACAGCAGTACGTGATGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010157_1

>merge|NZ_CP010157|1|35433-35571|CRISPRCasFinder
CTCATACTGACAGTCAGGTCACAGCAGTACGTGATGAACTGAAGGCAGAGGGAGACAGTCTGCGCGGTGAGATAGGCGGTGTATACAGAGATGCCCGTGCTCATACTGACAGTCAGGTTACAGCAGTACGTGATGAACT

>NZ_CP010157|1|1|35433-35571|CRISPRCasFinder
CTCATACTGACAGTCAGGTCACAGCAGTACGTGATGAACT	GAAGGCAGAGGGAGACAGTCTGCGCGGTGAGATAGGCGGTGTATACAGAGATGCCCGTG
CTCATACTGACAGTCAGGTTACAGCAGTACGTGATGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010157.1\|WP_001293447.1\|40266_41091_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP010157.1\|WP_001101067.1\|31876_32707_+\|transketolase	unknown	unknown	gnl\|CDD\|226468
NZ_CP010157.1\|WP_000983423.1\|38544_40101_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273923
NZ_CP010157.1\|WP_001323513.1\|27610_27802_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010157.1\|WP_000551919.1\|41247_42591_-\|esterase-like-activity-of-phytase-family-protein	unknown	unknown	gnl\|CDD\|226675
NZ_CP010157.1\|WP_089581225.1\|46907_47093_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|225216
NZ_CP010157.1\|WP_001018808.1\|28397_29417_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380489
NZ_CP010157.1\|WP_001317566.1\|29674_30118_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP010157.1\|WP_000699820.1\|30196_30469_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP010157.1\|WP_000803221.1\|45420_46737_-\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	unknown	unknown	gnl\|CDD\|182876
NZ_CP010157.1\|WP_000609007.1\|32699_33653_+\|transketolase-family-protein	unknown	unknown	gnl\|CDD\|226467
NZ_CP010157.1\|WP_131501864.1\|33915_34029_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP010157.1\|WP_000760915.1\|37012_37351_-\|c-type-lysozyme-inhibitor	unknown	unknown	gnl\|CDD\|237508
NZ_CP010157.1\|WP_001313273.1\|47101_47209_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225216
NZ_CP010157.1\|WP_000859647.1\|37855_38545_-\|N-acetylmannosamine-6-phosphate-2-epimerase	unknown	unknown	gnl\|CDD\|234907
NZ_CP010157.1\|WP_000884153.1\|36200_36656_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|369791
NZ_CP010157.1\|WP_073506891.1\|26748_27276_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010157.1\|WP_023147588.1\|27293_27542_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377323
NZ_CP010157.1\|WP_088895425.1\|42710_43939_-\|IS3-like-element-IS2-family-transposase	unknown	unknown	gnl\|CDD\|181829
NZ_CP010157.1\|WP_000470229.1\|30491_31880_+\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|171824

Protein	Function_ID	Function_description	E-value
NZ_CP010157.1\|WP_001293447.1\|40266_41091_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	3.33873e-68
NZ_CP010157.1\|WP_001101067.1\|31876_32707_+\|transketolase	gnl\|CDD\|226468	COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism].	2.51046e-131
NZ_CP010157.1\|WP_000983423.1\|38544_40101_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273923	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component. This model represents the combined B and C domains of the PTS transport system enzyme II specific for glucose transport. Many of the genes in this family also include an A domain as part of the same polypeptide and thus should be given the name "PTS system, glucose-specific IIABC component" while the B. subtilus enzyme also contains an enzyme III domain which appears to act independently of the enzyme II domains. This family is most closely related to the N-acetylglucosamine-specific PTS enzymes (TIGR01998). [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP010157.1\|WP_000551919.1\|41247_42591_-\|esterase-like-activity-of-phytase-family-protein	gnl\|CDD\|226675	COG4222, COG4222, Uncharacterized protein conserved in bacteria [Function unknown].	2.13095e-154
NZ_CP010157.1\|WP_089581225.1\|46907_47093_+\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|225216	COG2337, MazF, Growth inhibitor [Signal transduction mechanisms].	1.73653e-10
NZ_CP010157.1\|WP_001018808.1\|28397_29417_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	2.34254e-103
NZ_CP010157.1\|WP_001317566.1\|29674_30118_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	4.34883e-36
NZ_CP010157.1\|WP_000699820.1\|30196_30469_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.69739e-34
NZ_CP010157.1\|WP_000803221.1\|45420_46737_-\|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB	gnl\|CDD\|182876	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB.	0
NZ_CP010157.1\|WP_000609007.1\|32699_33653_+\|transketolase-family-protein	gnl\|CDD\|226467	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism].	2.5376e-149
NZ_CP010157.1\|WP_131501864.1\|33915_34029_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.46702e-08
NZ_CP010157.1\|WP_000760915.1\|37012_37351_-\|c-type-lysozyme-inhibitor	gnl\|CDD\|237508	PRK13791, PRK13791, c-type lysozyme inhibitor.	5.03241e-41
NZ_CP010157.1\|WP_001313273.1\|47101_47209_+\|hypothetical-protein	gnl\|CDD\|225216	COG2337, MazF, Growth inhibitor [Signal transduction mechanisms].	0.00290214
NZ_CP010157.1\|WP_000859647.1\|37855_38545_-\|N-acetylmannosamine-6-phosphate-2-epimerase	gnl\|CDD\|234907	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase.	1.29598e-127
NZ_CP010157.1\|WP_000884153.1\|36200_36656_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|369791	pfam08281, Sigma70_r4_2, Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.	4.12667e-05
NZ_CP010157.1\|WP_023147588.1\|27293_27542_-\|hypothetical-protein	gnl\|CDD\|377323	pfam04352, ProQ, ProQ/FINO family. This family includes ProQ, which is required for full activation of the osmoprotectant transporter, ProP, in Escherichia coli. This family includes several bacterial fertility inhibition (FINO) proteins. The conjugative transfer of F-like plasmids is repressed by FinO, an RNA binding protein. FinO interacts with the F-plasmid encoded traJ mRNA and its antisense RNA, FinP, stabilizing FinP against endonucleolytic degradation and facilitating sense-antisense RNA recognition. ProQ operates as an RNA-chaperone, binding RNA and bringing about both RNA strand-exchange and RNA duplexing. This suggests that in fact it does not regulate ProP transcription but rather regulates ProP translation through activity as an RNA-binding protein.	4.97715e-11
NZ_CP010157.1\|WP_088895425.1\|42710_43939_-\|IS3-like-element-IS2-family-transposase	gnl\|CDD\|181829	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed.	0
NZ_CP010157.1\|WP_000470229.1\|30491_31880_+\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|171824	PRK12996, ulaA, PTS ascorbate transporter subunit IIC.	0

>NZ_CP010157.1|WP_131501864.1|33915_34029_+|transposase
MVKLVLQPGASVARIAREHDINDNLLFKWLRLWQNVR
>NZ_CP010157.1|WP_000609007.1|32699_33653_+|transketolase-family-protein
MINLAPAGQKDSIEMRKVYADFIAQQSKNVSSVIALEADLMSSMAMDSVAQDYPDHVINCGIMEANVIGTAAGLALTGRKPFVHTFTAFASRRCFDQLFMSLDYQGANVKVIASDAGVAACHNGGTHMSFEDMGIVRGLAHSVVMEMTDAVMFSDILRQLVALEGFYWIRTIRKQAASIYAPGTTFTIGKGQVLREGTDVTLIANGIMVVEALEAARQLELAGVSVAVIDMFTLKPVDRMLIKNYAEKTGRIVTCENHSIHNGLGSAVAEVLVETCPVPMRRVGVKERYGQVGTQDFLQREYGLTAQDIVAAARELL
>NZ_CP010157.1|WP_001101067.1|31876_32707_+|transketolase
MNVKELTQFARDIRIQTLKSLTHLGFGHYGGSMSVVETLAVLYGAVMKIDPAAPDWPERDYFILSKGHAGPALYSTLALKGYFPLEELSTLNQNGTRLPSHPDRLKTCGVDSTTGSLGQGISIAGGMALSHKLAGRKNRVFCIVGDGELNEGQCWEAFQFIAHHRLNNLTVFVDWNKQQLDGQLDEIINPFDLEGKFRAFGFDVVTVKGDDIEGLLNVVKPVLPAEARPRVVILDSIKGQGVPCLEQLSNSHHLRLTEEMKGTLNETIRQLEAMHD
>NZ_CP010157.1|WP_000470229.1|30491_31880_+|PTS-ascorbate-transporter-subunit-IIC
MFILETLNFVVDILKVPAILVGLIALIGLVAQKKSFSDVVKGTIKTILGFIVLGGGATVLVGSLNPLGSMFEHAFNIQGIIPNNEAIVSIALEKYGASTALIMAFGMVANIIVARFTRLKYIFLTGHHTFYMACMIGVILTVAGFEGISLVFTGSLILGLVMAFFPALAQRYMKRITGNDDIAFGHFGTLGYVLSGWIGSVCGKGSRSTEEMNLPKNLSFLRDSSISISLTMMVIYLIMAISAGREFVESQFSGGQNYLVYAIIMAITFAAGVFIILQGVRLILAEIVPAFTGFSEKLVPNARPALDCPVVYPYAPNAVLVGFLFSFFGGLVGLFLLGQMKLVLILPGVVPHFFTGAAAGVFGNATGGRRGAMIGAFANGLLITFLPVLLLPVLGAIGFANTTFSDADFGAVGIVLGNLARYLSPFAITGLVVALFVLLVAWNIFASNKIAAKAQKKSGAKS
>NZ_CP010157.1|WP_000699820.1|30196_30469_+|PTS-sugar-transporter-subunit-IIB
MKIMAICGSGLGSSFMVEMNIKKVLKKMDIEAEVEHSDLSSATPGAADLFVMAKDIAASASVPESQLVVINNIIDINELETQLRNWLAKQ
>NZ_CP010157.1|WP_001317566.1|29674_30118_+|PTS-sugar-transporter-subunit-IIA
MLNIWLSDSTIALRKNAATWQQALDICARPLLDAEIITTDYLSAIKTQHEKLGPYYVLAPGLAMPHARPEEGAKGLGLSLLKLEEGVSFHTEEFDPVDVIILLAAPDKHSHIEMISALAELFSSEKDLHELHQARNVEEIKKIISRF
>NZ_CP010157.1|WP_001018808.1|28397_29417_-|LacI-family-DNA-binding-transcriptional-regulator
MAITRKRRSTGKVTIADVAQLAGVGTMTVSRALRTPEQVSDKLREKIEAAVNELGYMPNLTASALASASSHTIAMVVPNLAEAGCTEMFAGLQHVLQPAGYQIILAESRHRLEQEEKLLETLLASNIAAAILLSVEHNSTVRHLLKNASIPVIEIGAIRTDPIDINIGIDNVAAMFELTDMLVQRGYQNIGLLCANQEQWIFQQHLQGWYKAMLRHHMSPNRVINAALPPVFSTGASQLPEFLLAWPELDALVCVSDELACGVLYECQRRRIKVPDELAVVGFGDSDVSKVCQPSLTTMAVPHRKIGLEAGNVLLERIKEGNWSNQIFIEPCLCLRESC
>NZ_CP010157.1|WP_001323513.1|27610_27802_-|hypothetical-protein
MVTLTINRKPQGIFSKSPATPLQDKTDTAYKMKAGDQIPQLNDKQKPADKTPWRHDKTPEQKP
>NZ_CP010157.1|WP_023147588.1|27293_27542_-|hypothetical-protein
MGIPDDLIQDIAIRELAFGAGTLHAAVASYVQSPCYYRALIAGGARYNLNGQPCGEVTPQEQKEAETRLMMLNDRRKDRKPR
>NZ_CP010157.1|WP_073506891.1|26748_27276_+|hypothetical-protein
MTSRVGNIQSFVHKVVEHWPNLLAFHFTLYSAEGIYGQQIQTFCSSFHRRVHERITEHNHTVSPSAPVVLRWLREQHEGAQIRCLLLLSQTSICHPRVGVMADEECAQLVDLLQQTWSVISAGGQCRVERCFRVARGDTSGQYIALKTVALSLGLPVVTGITHRPVQRCTLITAQ
>NZ_CP010157.1|WP_000884153.1|36200_36656_+|sigma-70-family-RNA-polymerase-sigma-factor
MLDIILATRDIYFEKALREIFGTVSSRIRYIEDAISDRRRVQSGRSFRYYFVFCDDEYTDIVRILFTGEACCILNKSMLNLRAAGGVLTLEERRAVLNRYYRGLSIAEITEETGQNDKTVYGHLRRALQRSGFRKGRFIKGREAAGDSGVE
>NZ_CP010157.1|WP_000760915.1|37012_37351_-|c-type-lysozyme-inhibitor
MKKYSSPVLALILVSNSMVSSAATKEISKTAYVCNGNKTMEVVYINTTAGNSYAVINQMDEMIPMQLMKMASGANYEAINKRYSYKLYTKGKKANLVEGNDNPVLSNCSSAE
>NZ_CP010157.1|WP_000859647.1|37855_38545_-|N-acetylmannosamine-6-phosphate-2-epimerase
MKTVLDSLKGKLIVSCQALENEPLHSPFIMSRMALAAAQGGAAGIRANSVADISAIKEIVSLPMIGIIKRDYPGSEVFITATLREVDELMTVEPEIIALDATARPRPGGQTLEELVTQIRARYPSILLMADIATVEEAVTAERLGFDCVGTTLYGYTAETARHVLAENDCGFLREVLKAVSVPVVAEGNVDTPECAARCLTLGAHTVVVGGAITRPQQITTRFIAAIAS
>NZ_CP010157.1|WP_000983423.1|38544_40101_-|PTS-transporter-subunit-EIIC
MMQMFSGASSGGWFEKAQRFGKSFMLPIAVLPAAGLLLGIGGALSNPNTLTAYPFLDADWLQAIFTIMTSAGSIVFANLSVLFAVGVAVGLAKSDKGTAGLASLLAFLVMNATINALLTLNGTLAHKNPASVGQGMTLGIQTLETGVFGGVVIGLVTCTLHSRFNKVSLPQFLGFFSGSRFVPIISSLAAIVVGAVMTVVWPHFQKLIFGLGDLVDATGYLGTLLYGFILRMLGPLGLHHIFYLPFWTTALGGSEIVNGQLVEGTQRIFFAQLADPNTQQFYAGTARFMSGRFITMMFGLLGACLAMYHTAKPENRKVVAGLLLSAALTSFLTGITEPVEFSFLFVAPVLYVIHAFFDGLAFMVAHILHITIGQTFSGGLIDFLLFGVLQGEAKTNWMYVPIVGIPWFFLYYFTFRYLINRFGWLTPGRENVTQVESGQPQSERAAAVIAGLGGKENLEEVDCCATRLRVTVKESSKVDEAALKVAGARGVIIRGNGVQVIYGPHVTIIKNEVEEILS
>NZ_CP010157.1|WP_001293447.1|40266_41091_+|MurR/RpiR-family-transcriptional-regulator
MSENENLLLRLRQSVDGYSRTQQKLGEFVLSDPAKVVYLTITELARESGTSEASVTRLCRTLGCKGYNEFKMALALDLRQVQFVEHGGDEIDNVVNESVQAIQDTAKLLDRALLEAAALALHQAQSVQIYGVAASAILGEYLHYKLLRLGKPAQLFSDMHRAAMNATTLSKNTFVVAISSSGSTRDLLHVVKLARKQGVRVLALSNTPRSPLASLSDIQLVAAKPEGPLSAGALTAKVGVMLLVELLTTSLIALDDQYSEVSQKTASATLPLLL
>NZ_CP010157.1|WP_000551919.1|41247_42591_-|esterase-like-activity-of-phytase-family-protein
MHNSKIRLAILVGCMALSANLWAKAQPVQATLAGHAILPAKSAVSTPKDAPGDLQQSGKYTSGKRVTELGSVAGKSAERLTGLSLPINGQPLQGHSGIKHMPDGTYWVLTDNGFGSKANSPDAMLYLNQYKIDFKDGSVVPLKTLFLHDPDKKVPFHIINESTELRYLTGSDFDPESFQFSDDALWIGDEFGPYLIKTDLNGKVLAVFDTEVDGKVVKSPDNPTLTLPSAPDGKLNFQVARSKGFEGMAISPDGSKLYPLLEGALWDGEQFENVDGKRYLRVLEFDAKQQAWTGRSWQYVLEDNQNAIGDFNMIDDTHGLVIERDNGEGTADKACVAGAPTNNCFSQVARFKRVYKIAFSDTNVGKPVEKLGYIDLMKIQDPNKLARKPLNDGVLTFPFFTIENVDVVDTNHIIVGNDNNFPFSSSRWPNMADDNEFILLDVKDFLK
>NZ_CP010157.1|WP_088895425.1|42710_43939_-|IS3-like-element-IS2-family-transposase
MIDVLGPEKRRRRTTQEKIAIVQQSFEPGMTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLLGKKTMENELLKEAVEYGRGKKVDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI
>NZ_CP010157.1|WP_000803221.1|45420_46737_-|sn-glycerol-3-phosphate-ABC-transporter-substrate-binding-protein-UgpB
MKPLHYTASALVLGLTLMGNAQAVTTIPFWHSMEGELGKEVNSLVQRFNAENPDYKIIPTYKGNYEESLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIKPVYDVFKEAGINFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGLDPEQPPKTWQDLADYAAKLKASGMKCGYSSGWQGWIQLENFSAWNGLPFASKNNGFDGTDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLASIREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKPENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADIATRQMLNKPSLPFTKGLRLGNMPQIRAIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTKS
>NZ_CP010157.1|WP_089581225.1|46907_47093_+|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MEFDPAVDSEIRKTCPAVIVSNDAANRNLARVVVVPLTSNTERVYPSEAVVTVGVRAAKRL
>NZ_CP010157.1|WP_001313273.1|47101_47209_+|hypothetical-protein
MAADKSCLKTHIGSLSKADMLSVEDAIKIHLGLLR

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Crispr_ID: NZ_CP010157_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010157_2

1147089-1147484

Unclear

I-E

Consensus_repeat	Method
AGAGTTCCCCACGTCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCACGTCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCNCGNCAGCGGGGATAAACCG	CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

6 spacers

The CRISPR arrays of NZ_CP010157_2

>merge|NZ_CP010157|2|1147089-1147484|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
AGAGTTCCCCACGTCAGCGGGGATAAACCGGCTCCGCCGGTTTGATCTCCGGTTTGCGCTGTGAGTTCCCCACGTCAGCGGGGATAAACCGTTGGTCACTCGTCAAAAGTCGAGACGGTCGAAGAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCGCTAGGATAAATTAAAAGACAAAATTGCAGCAAGAGTTCCCCGCGGCAGCGGGGATAAACCGGAGCGACCAGTATCAAGATCGACAGGTTTTGCGAGTTCCCCGCGCCAGCGGGGATAAACCGATCGATATGTACGTTAGCGAGGGGATCACGCAGAGTTCCCCGCACCAGCGGGGATAAACCA

>NZ_CP010157|2|1|1147089-1147240|PILER-CR
AGAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTG
TGAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGA
AGAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA


>NZ_CP010157|2|2|1147090-1147484|CRISPRCasFinder
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCG	AATGATTGATATAAATCTGTGTACGGTGTCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

>NZ_CP010157|2|1|1147090-1147484|CRT
GAGTTCCCCACGTCAGCGGGGATAAACCG	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTGT
GAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGAA
GAGTTCCCCACGTCAGCGGGGATAAACCG	AATGATTGATATAAATCTGTGTACGGTGTCCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

>NZ_CP010157|2|2|1147273-1147484|PILER-CR
	GCTCCGCCGGTTTGATCTCCGGTTTGCGCTG
TGAGTTCCCCACGTCAGCGGGGATAAACCG	TTGGTCACTCGTCAAAAGTCGAGACGGTCGA
AGAGTTCCCCACGTCAGCGGGGATAAACCGAATGATTGATATAAATCTGTGTACGGTGTCCGGAGTTCCCCGCGCCAGCGGGGATAAACCG	CTAGGATAAATTAAAAGACAAAATTGCAGCAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GAGCGACCAGTATCAAGATCGACAGGTTTTGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATCGATATGTACGTTAGCGAGGGGATCACGCA
GAGTTCCCCGCACCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010157.1\|WP_000211791.1\|1131386_1132727_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP010157.1\|WP_000226815.1\|1138480_1140715_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP010157.1\|WP_000098244.1\|1132747_1134088_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP010157.1\|WP_021539298.1\|1153553_1154963_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP010157.1\|WP_000039745.1\|1148121_1149600_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP010157.1\|WP_000097082.1\|1130032_1131385_+\|galactarate/glucarate/glycerate-transporter-GudP	unknown	unknown	gnl\|CDD\|273326
NZ_CP010157.1\|WP_001164575.1\|1149626_1150904_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP010157.1\|WP_001071634.1\|1140810_1141602_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP010157.1\|WP_000036723.1\|1143553_1144852_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP010157.1\|WP_001130278.1\|1156723_1157299_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP010157.1\|WP_000109536.1\|1157315_1157576_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP010157.1\|WP_001318004.1\|1157566_1158838_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP010157.1\|WP_001318005.1\|1155716_1156577_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP010157.1\|WP_000210878.1\|1141829_1143467_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP010157.1\|WP_000186450.1\|1134318_1137075_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP010157.1\|WP_001199973.1\|1146078_1146750_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP010157.1\|WP_000046790.1\|1137131_1138433_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP010157.1\|WP_000059315.1\|1152077_1153532_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP010157.1\|WP_001318006.1\|1154940_1155720_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP010157.1\|WP_000021322.1\|1151222_1152008_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605

Protein	Function_ID	Function_description	E-value
NZ_CP010157.1\|WP_000211791.1\|1131386_1132727_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP010157.1\|WP_000226815.1\|1138480_1140715_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP010157.1\|WP_000098244.1\|1132747_1134088_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP010157.1\|WP_021539298.1\|1153553_1154963_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.9363e-52
NZ_CP010157.1\|WP_000039745.1\|1148121_1149600_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.96639e-109
NZ_CP010157.1\|WP_000097082.1\|1130032_1131385_+\|galactarate/glucarate/glycerate-transporter-GudP	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	6.41821e-161
NZ_CP010157.1\|WP_001164575.1\|1149626_1150904_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.00463e-29
NZ_CP010157.1\|WP_001071634.1\|1140810_1141602_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.42418e-159
NZ_CP010157.1\|WP_000036723.1\|1143553_1144852_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP010157.1\|WP_001130278.1\|1156723_1157299_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.96043e-88
NZ_CP010157.1\|WP_000109536.1\|1157315_1157576_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
NZ_CP010157.1\|WP_001318004.1\|1157566_1158838_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	2.50386e-125
NZ_CP010157.1\|WP_001318005.1\|1155716_1156577_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.86737e-87
NZ_CP010157.1\|WP_000210878.1\|1141829_1143467_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP010157.1\|WP_000186450.1\|1134318_1137075_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP010157.1\|WP_001199973.1\|1146078_1146750_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP010157.1\|WP_000046790.1\|1137131_1138433_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP010157.1\|WP_000059315.1\|1152077_1153532_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.16286e-81
NZ_CP010157.1\|WP_001318006.1\|1154940_1155720_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.49488e-64
NZ_CP010157.1\|WP_000021322.1\|1151222_1152008_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.9939e-139

>NZ_CP010157.1|WP_001199973.1|1146078_1146750_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP010157.1|WP_000036723.1|1143553_1144852_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP010157.1|WP_000210878.1|1141829_1143467_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP010157.1|WP_001071634.1|1140810_1141602_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADGSAGNSREVLARWEQIKTEERAQKAQHSALDDIPSSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQVVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP010157.1|WP_000226815.1|1138480_1140715_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP010157.1|WP_000046790.1|1137131_1138433_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAIRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP010157.1|WP_000186450.1|1134318_1137075_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP010157.1|WP_000098244.1|1132747_1134088_+|glucarate-dehydratase
MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQPDDKCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPLEIKGGLVQVPEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>NZ_CP010157.1|WP_000211791.1|1131386_1132727_+|glucarate-dehydratase
MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTDNAGHTGIGEAPGGEVIYQTLVKAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGQALNVPVCELLGPGKQRDAITVLGYLFYIGDRTKTDLPYLENTSGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDTVRALKKRFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVPDAPGLGVELDWEQVQKAHEAYKRLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH
>NZ_CP010157.1|WP_000097082.1|1130032_1131385_+|galactarate/glucarate/glycerate-transporter-GudP
MSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSMFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSIFNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQKELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTPIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIELKPVAGQ
>NZ_CP010157.1|WP_000039745.1|1148121_1149600_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFASHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDTAVMEKFNIPRQMLFDVQMPGTVLGHITRQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP010157.1|WP_001164575.1|1149626_1150904_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSTNNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIIFTFLLFQKIRTADSAPAMASSK
>NZ_CP010157.1|WP_000021322.1|1151222_1152008_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>NZ_CP010157.1|WP_000059315.1|1152077_1153532_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYVLEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP010157.1|WP_021539298.1|1153553_1154963_+|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFIGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGVLLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP010157.1|WP_001318006.1|1154940_1155720_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVVLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>NZ_CP010157.1|WP_001318005.1|1155716_1156577_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNITIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSMRKSHWGNALTATLQTEKRPLCLSLARQAGALKNATLPSGMQQLNIVPGAPPDWLISVENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLVEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKAVLEALVTTIHADCQ
>NZ_CP010157.1|WP_001130278.1|1156723_1157299_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP010157.1|WP_000109536.1|1157315_1157576_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP010157.1|WP_001318004.1|1157566_1158838_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLVERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGTQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: NZ_CP010157_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010157_3

1173186-1174617

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

23 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP010157_3

>merge|NZ_CP010157|3|1173186-1174617|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCATTGAAAACATTGCCTTTATTTTATTTTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCCGCCGCTGGGCACTTCCTTCCCGTGAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCTGATAGCGTCCAGTTGAATGCGCGCCCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGGCACGGGCAATATCAGACTCGGTCAAAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCTGCATACCCCTGTTTTTGCTCTTAGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGGTAAACGACTGGGTGCATAAATACAAGGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCGGTTGTTTTCATATTACCGGCCTGCCACTGTGTTCCCCGCGCCAGCGGGGATAAACCGACAATATCCCGGACCGGGCGCTGATTTAGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTTTCATCAATCGGAGCATATTTGCGATCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGACGGTGGGAATATAGAAAATCCGTCCACCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTATACTCTTTTCATCGACTAAGGAGGGGAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATAACGCAGCATCCAGGAAGCTGTTTCCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGATCGGTGAAGAGGTCCGCGAAATACTCACTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATAGTTGATTCAGCCGCGCCAGCGAATGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCCGCCGCGAATTTACACACGATTCAATACGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTGGTGCGCGACGGCTGGCTAACAAAACGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTGGCTGCGCTGGCCGTTGCAGCAGTTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTAAACGCCCCGTCGCCATTAATTTCGGGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGGATGAGCAAATAACGTCGTTTCCTAGAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGCCGTGCCAGTGATCCTCATACGGCCTGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAAGAACGGCGTAAACGACGGCAGCATGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGATGATTCAGAGCAGACATTAGCCCGCGCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGGTAAAAACACGGTCTGAACCGACATTCATGTGTGTTCCCCGCGTCAGCGGGGATAAACCG

>NZ_CP010157|3|3|1173186-1174617|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGCACGGGCAATATCAGACTCGGTCAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGGTAAACGACTGGGTGCATAAATACAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGGTTGTTTTCATATTACCGGCCTGCCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATATCCCGGACCGGGCGCTGATTTAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTTCATCAATCGGAGCATATTTGCGATCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGACGGTGGGAATATAGAAAATCCGTCCACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATACTCTTTTCATCGACTAAGGAGGGGAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAACGCAGCATCCAGGAAGCTGTTTCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTGAAGAGGTCCGCGAAATACTCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATAGTTGATTCAGCCGCGCCAGCGAATGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCCGCCGCGAATTTACACACGATTCAATAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGGTGCGCGACGGCTGGCTAACAAAACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGCTGCGCTGGCCGTTGCAGCAGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTAAACGCCCCGTCGCCATTAATTTCGGGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGATGAGCAAATAACGTCGTTTCCTAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGTGCCAGTGATCCTCATACGGCCTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>NZ_CP010157|3|3|1173186-1174617|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGCACGGGCAATATCAGACTCGGTCAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGGTAAACGACTGGGTGCATAAATACAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGGTTGTTTTCATATTACCGGCCTGCCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATATCCCGGACCGGGCGCTGATTTAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTTCATCAATCGGAGCATATTTGCGATCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGACGGTGGGAATATAGAAAATCCGTCCACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATACTCTTTTCATCGACTAAGGAGGGGAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAACGCAGCATCCAGGAAGCTGTTTCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTGAAGAGGTCCGCGAAATACTCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATAGTTGATTCAGCCGCGCCAGCGAATGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCCGCCGCGAATTTACACACGATTCAATAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGGTGCGCGACGGCTGGCTAACAAAACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGCTGCGCTGGCCGTTGCAGCAGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTAAACGCCCCGTCGCCATTAATTTCGGGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGATGAGCAAATAACGTCGTTTCCTAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGTGCCAGTGATCCTCATACGGCCTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>NZ_CP010157|3|2|1173186-1174617|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATTGAAAACATTGCCTTTATTTTATTTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCCGCCGCTGGGCACTTCCTTCCCGTGAGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCTGATAGCGTCCAGTTGAATGCGCGCCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGGCACGGGCAATATCAGACTCGGTCAAAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCTGCATACCCCTGTTTTTGCTCTTAGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGGTAAACGACTGGGTGCATAAATACAAGGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCGGTTGTTTTCATATTACCGGCCTGCCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATATCCCGGACCGGGCGCTGATTTAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTTTCATCAATCGGAGCATATTTGCGATCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGACGGTGGGAATATAGAAAATCCGTCCACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATACTCTTTTCATCGACTAAGGAGGGGAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAACGCAGCATCCAGGAAGCTGTTTCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGATCGGTGAAGAGGTCCGCGAAATACTCACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATAGTTGATTCAGCCGCGCCAGCGAATGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCCGCCGCGAATTTACACACGATTCAATAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTGGTGCGCGACGGCTGGCTAACAAAACGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTGGCTGCGCTGGCCGTTGCAGCAGTTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTAAACGCCCCGTCGCCATTAATTTCGGGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGATGAGCAAATAACGTCGTTTCCTAGAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGCCGTGCCAGTGATCCTCATACGGCCTGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAAGAACGGCGTAAACGACGGCAGCATG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGATGATTCAGAGCAGACATTAGCCCGCGCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGTAAAAACACGGTCTGAACCGACATTCATGT
GTGTTCCCCGCGTCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010157.1\|WP_000029335.1\|1168883_1169420_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP010157.1\|WP_073506922.1\|1164569_1167227_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP010157.1\|WP_001295182.1\|1182042_1182804_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP010157.1\|WP_000144858.1\|1171875_1172799_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP010157.1\|WP_000085058.1\|1170500_1171247_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP010157.1\|WP_001090371.1\|1176897_1178325_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP010157.1\|WP_000490430.1\|1174698_1175736_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP010157.1\|WP_000568955.1\|1181012_1182062_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP010157.1\|WP_001219237.1\|1180536_1181016_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP010157.1\|WP_000039853.1\|1163181_1163916_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP010157.1\|WP_000063170.1\|1172795_1173089_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP010157.1\|WP_000246133.1\|1179826_1180537_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP010157.1\|WP_000206444.1\|1169434_1170490_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP010157.1\|WP_000956458.1\|1164179_1164332_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP010157.1\|WP_000517479.1\|1179496_1179808_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP010157.1\|WP_001246104.1\|1178979_1179303_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP010157.1\|WP_001173653.1\|1178324_1178930_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP010157.1\|WP_001084113.1\|1167324_1168887_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP010157.1\|WP_000281438.1\|1171228_1171879_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP010157.1\|WP_000372392.1\|1175987_1176896_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375

Protein	Function_ID	Function_description	E-value
NZ_CP010157.1\|WP_000029335.1\|1168883_1169420_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.62446e-29
NZ_CP010157.1\|WP_073506922.1\|1164569_1167227_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.71433e-179
NZ_CP010157.1\|WP_001295182.1\|1182042_1182804_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP010157.1\|WP_000144858.1\|1171875_1172799_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157
NZ_CP010157.1\|WP_000085058.1\|1170500_1171247_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.00414e-48
NZ_CP010157.1\|WP_001090371.1\|1176897_1178325_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP010157.1\|WP_000490430.1\|1174698_1175736_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP010157.1\|WP_000568955.1\|1181012_1182062_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP010157.1\|WP_001219237.1\|1180536_1181016_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	5.30213e-104
NZ_CP010157.1\|WP_000039853.1\|1163181_1163916_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.40583e-137
NZ_CP010157.1\|WP_000063170.1\|1172795_1173089_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	3.0872e-65
NZ_CP010157.1\|WP_000246133.1\|1179826_1180537_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.47016e-121
NZ_CP010157.1\|WP_000206444.1\|1169434_1170490_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	3.45361e-154
NZ_CP010157.1\|WP_000956458.1\|1164179_1164332_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP010157.1\|WP_000517479.1\|1179496_1179808_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.23098e-61
NZ_CP010157.1\|WP_001246104.1\|1178979_1179303_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP010157.1\|WP_001173653.1\|1178324_1178930_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	1.12214e-148
NZ_CP010157.1\|WP_001084113.1\|1167324_1168887_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP010157.1\|WP_000281438.1\|1171228_1171879_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.43159e-91
NZ_CP010157.1\|WP_000372392.1\|1175987_1176896_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0

>NZ_CP010157.1|WP_000063170.1|1172795_1173089_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP010157.1|WP_000144858.1|1171875_1172799_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP010157.1|WP_000281438.1|1171228_1171879_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP010157.1|WP_000085058.1|1170500_1171247_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP010157.1|WP_000206444.1|1169434_1170490_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTLQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP010157.1|WP_000029335.1|1168883_1169420_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIESQEWRFTALALVAAVAANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDELLRQLRRAVKLLNGSVNLISLADDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP010157.1|WP_001084113.1|1167324_1168887_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVHLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALLPLEHAFQFGPDSPSFMQDFEALTGDKVPVASLLPEIPGVQTTKFNKDHFIKRGVTEHLCPQCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKMWLNVMPQDEADLPLPKKFDGLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRIPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGVRGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP010157.1|WP_073506922.1|1164569_1167227_+|CRISPR-associated-helicase/endonuclease-Cas3
MTFFYFWGKTRRGEKDGGEDYHLLCWHSLDVAAMGYLMVKSNCFGLAGYFRQLGFADTELAAQFFAWLLCWHDIGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLKRVMEMWMPMTTGHHGRPPERMDELDNFLPEDKGAARDFLLAIKVLFPLIEIPTFWDDDEGVELIKQLSWYISATVVLADWTGSSTRYFPRVAQAMDIEDYWQKTLVQAQNALTVFPPKAESAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATVNAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGIEGQQEAPLLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIQVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEYCSQRAGKVLICTQVLEQSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDINGLLKRDGKDERSPPEFLILAPVWDDSPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVAMPEGFARSEQEQVGKYYCDRAMAKKFVLNFKPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDAFRQWCIEQRQDPEMANVILVTDDESCGYSAMEGLTGKVG
>NZ_CP010157.1|WP_000956458.1|1164179_1164332_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP010157.1|WP_000039853.1|1163181_1163916_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP010157.1|WP_000490430.1|1174698_1175736_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP010157.1|WP_000372392.1|1175987_1176896_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP010157.1|WP_001090371.1|1176897_1178325_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFSGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP010157.1|WP_001173653.1|1178324_1178930_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTPQQREQHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP010157.1|WP_001246104.1|1178979_1179303_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP010157.1|WP_000517479.1|1179496_1179808_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNNDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP010157.1|WP_000246133.1|1179826_1180537_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGEERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAETGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP010157.1|WP_001219237.1|1180536_1181016_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYALGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP010157.1|WP_000568955.1|1181012_1182062_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVMEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAEETELQTLLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP010157.1|WP_001295182.1|1182042_1182804_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP010157_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010157_4

2349040-2349163

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010157_4

>merge|NZ_CP010157|4|2349040-2349163|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP010157|4|4|2349040-2349163|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010157.1\|WP_000269493.1\|2355806_2356739_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP010157.1\|WP_001273564.1\|2341774_2343877_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP010157.1\|WP_000587571.1\|2346045_2346858_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP010157.1\|WP_000528342.1\|2340462_2340672_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP010157.1\|WP_000102278.1\|2358059_2358149_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP010157.1\|WP_001069962.1\|2345256_2346042_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP010157.1\|WP_000534265.1\|2349477_2350734_+\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP010157.1\|WP_000007283.1\|2359629_2360211_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP010157.1\|WP_000716945.1\|2346863_2348474_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP010157.1\|WP_001563425.1\|2343889_2344528_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP010157.1\|WP_000493956.1\|2352362_2353004_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP010157.1\|WP_000190982.1\|2356735_2357761_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP010157.1\|WP_001182362.1\|2354482_2355694_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP010157.1\|WP_001295403.1\|2338493_2339906_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP010157.1\|WP_000098896.1\|2353043_2354192_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP010157.1\|WP_000212668.1\|2348599_2348905_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP010157.1\|WP_001695795.1\|2341127_2341754_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP010157.1\|WP_001174939.1\|2350774_2352148_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP010157.1\|WP_000701039.1\|2358314_2359484_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP010157.1\|WP_001317862.1\|2344591_2345260_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451

Protein	Function_ID	Function_description	E-value
NZ_CP010157.1\|WP_000269493.1\|2355806_2356739_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP010157.1\|WP_001273564.1\|2341774_2343877_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP010157.1\|WP_000587571.1\|2346045_2346858_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	1.03394e-173
NZ_CP010157.1\|WP_000528342.1\|2340462_2340672_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP010157.1\|WP_000701039.1\|2358314_2359484_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	9.34269e-98
NZ_CP010157.1\|WP_001069962.1\|2345256_2346042_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	1.75608e-161
NZ_CP010157.1\|WP_000534265.1\|2349477_2350734_+\|AIDA-repeat-containing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP010157.1\|WP_000716945.1\|2346863_2348474_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP010157.1\|WP_001563425.1\|2343889_2344528_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.09672e-120
NZ_CP010157.1\|WP_000493956.1\|2352362_2353004_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	1.68379e-123
NZ_CP010157.1\|WP_000190982.1\|2356735_2357761_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP010157.1\|WP_001182362.1\|2354482_2355694_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP010157.1\|WP_001295403.1\|2338493_2339906_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP010157.1\|WP_000098896.1\|2353043_2354192_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP010157.1\|WP_000212668.1\|2348599_2348905_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	5.59739e-64
NZ_CP010157.1\|WP_001695795.1\|2341127_2341754_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	7.7474e-138
NZ_CP010157.1\|WP_001174939.1\|2350774_2352148_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP010157.1\|WP_000007283.1\|2359629_2360211_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP010157.1\|WP_001317862.1\|2344591_2345260_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.72056e-77

>NZ_CP010157.1|WP_000212668.1|2348599_2348905_-|monooxygenase
MATLLQLHFAFNGPFGDAMVEQLEPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP010157.1|WP_000716945.1|2346863_2348474_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEVGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEEIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAIAQAVVKPASRARRRLSFNQM
>NZ_CP010157.1|WP_000587571.1|2346045_2346858_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERAFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGEDSTIVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP010157.1|WP_001069962.1|2345256_2346042_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPLFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSANDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATTVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP010157.1|WP_001317862.1|2344591_2345260_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTMQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP010157.1|WP_001563425.1|2343889_2344528_+|YdhW-family-putative-oxidoreductase-system-protein
MNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDHADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDIAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP010157.1|WP_001273564.1|2341774_2343877_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLNIKDDKVSLEKADLLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRKTLQRLGLEDIAADLAAHNLLPA
>NZ_CP010157.1|WP_001695795.1|2341127_2341754_+|ferredoxin-like-protein
MTPVDRPLLNIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNLNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP010157.1|WP_000528342.1|2340462_2340672_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP010157.1|WP_001295403.1|2338493_2339906_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP010157.1|WP_000534265.1|2349477_2350734_+|AIDA-repeat-containing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITDAATQVHLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP010157.1|WP_001174939.1|2350774_2352148_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>NZ_CP010157.1|WP_000493956.1|2352362_2353004_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLEGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP010157.1|WP_000098896.1|2353043_2354192_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP010157.1|WP_001182362.1|2354482_2355694_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVDCQNHGNAEVAHSESH
>NZ_CP010157.1|WP_000269493.1|2355806_2356739_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP010157.1|WP_000190982.1|2356735_2357761_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP010157.1|WP_000102278.1|2358059_2358149_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP010157.1|WP_000701039.1|2358314_2359484_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPEAVCVANS
>NZ_CP010157.1|WP_000007283.1|2359629_2360211_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP010157_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010157_5

2949460-2949551

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010157_5

>merge|NZ_CP010157|5|2949460-2949551|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP010157|5|5|2949460-2949551|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTTTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010157.1\|WP_001317757.1\|2943903_2944995_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP010157.1\|WP_001151437.1\|2949974_2950571_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP010157.1\|WP_000979523.1\|2938711_2938921_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP010157.1\|WP_000777650.1\|2946092_2946905_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP010157.1\|WP_000209903.1\|2954213_2954813_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP010157.1\|WP_001054732.1\|2961210_2963955_+\|TMAO-reductase-system-sensor-histidine-kinase/response-regulator-TorS	unknown	unknown	gnl\|CDD\|236914
NZ_CP010157.1\|WP_001063153.1\|2954809_2957356_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP010157.1\|WP_001143120.1\|2950591_2950819_+\|YccJ-family-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP010157.1\|WP_001240618.1\|2948017_2949346_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP010157.1\|WP_001001057.1\|2946901_2947492_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP010157.1\|WP_001028089.1\|2947502_2947997_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP010157.1\|WP_001126780.1\|2945698_2946085_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP010157.1\|WP_001044299.1\|2950856_2952098_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP010157.1\|WP_073507081.1\|2944994_2945687_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP010157.1\|WP_001230244.1\|2957355_2958528_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP010157.1\|WP_000191701.1\|2942977_2943616_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP010157.1\|WP_001317758.1\|2938975_2942938_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP010157.1\|WP_000024569.1\|2953552_2953858_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP010157.1\|WP_000420644.1\|2952632_2953553_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP010157.1\|WP_073507003.1\|2960099_2961128_-\|TMAO-reductase-system-periplasmic-protein-TorT	unknown	unknown	gnl\|CDD\|236801

Protein	Function_ID	Function_description	E-value
NZ_CP010157.1\|WP_001317757.1\|2943903_2944995_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP010157.1\|WP_001151437.1\|2949974_2950571_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP010157.1\|WP_000777650.1\|2946092_2946905_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	4.11116e-140
NZ_CP010157.1\|WP_000209903.1\|2954213_2954813_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	6.77311e-84
NZ_CP010157.1\|WP_001054732.1\|2961210_2963955_+\|TMAO-reductase-system-sensor-histidine-kinase/response-regulator-TorS	gnl\|CDD\|236914	PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional.	0
NZ_CP010157.1\|WP_001063153.1\|2954809_2957356_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP010157.1\|WP_001143120.1\|2950591_2950819_+\|YccJ-family-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP010157.1\|WP_001240618.1\|2948017_2949346_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP010157.1\|WP_001001057.1\|2946901_2947492_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	1.84195e-129
NZ_CP010157.1\|WP_001028089.1\|2947502_2947997_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	2.31162e-104
NZ_CP010157.1\|WP_001126780.1\|2945698_2946085_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP010157.1\|WP_001044299.1\|2950856_2952098_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP010157.1\|WP_073507081.1\|2944994_2945687_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.24978e-168
NZ_CP010157.1\|WP_001230244.1\|2957355_2958528_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP010157.1\|WP_000191701.1\|2942977_2943616_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP010157.1\|WP_001317758.1\|2938975_2942938_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP010157.1\|WP_000024569.1\|2953552_2953858_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	7.6018e-65
NZ_CP010157.1\|WP_000420644.1\|2952632_2953553_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP010157.1\|WP_073507003.1\|2960099_2961128_-\|TMAO-reductase-system-periplasmic-protein-TorT	gnl\|CDD\|236801	PRK10936, PRK10936, TMAO reductase system periplasmic protein TorT; Provisional.	5.24989e-177

>NZ_CP010157.1|WP_001240618.1|2948017_2949346_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSIFMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKNVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAPVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNTLLSRRLVDVPPPEVVHQEP
>NZ_CP010157.1|WP_001028089.1|2947502_2947997_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCLQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP010157.1|WP_001001057.1|2946901_2947492_+|malonic-semialdehyde-reductase
MNEAISPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRSLGLDTGPMSGFDRQHVDDAFFTGSTLKSNLLINIGYGDSSKLYARLPRLSFEETCGLM
>NZ_CP010157.1|WP_000777650.1|2946092_2946905_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLDQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINAHTRRCFQVREQLLHSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAACKELL
>NZ_CP010157.1|WP_001126780.1|2945698_2946085_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP010157.1|WP_073507081.1|2944994_2945687_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQTALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTSIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSSTSFARIA
>NZ_CP010157.1|WP_001317757.1|2943903_2944995_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYIQVLRDLWGSGKSDFKGDFFTMDDCRVSPQPSVPMKVICAGQSDAGMAFSARYADFNFCFGKGVNTPTAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIENFGERIQPLMQCRAHLPALTQEVA
>NZ_CP010157.1|WP_000191701.1|2942977_2943616_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP010157.1|WP_001317758.1|2938975_2942938_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGDGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQSVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDERVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDNFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALIQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP010157.1|WP_000979523.1|2938711_2938921_-|hypothetical-protein
MMLQLCATVLNVTCVASLKMNEMLINEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP010157.1|WP_001151437.1|2949974_2950571_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP010157.1|WP_001143120.1|2950591_2950819_+|YccJ-family-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP010157.1|WP_001044299.1|2950856_2952098_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYKLLEQIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDRVLNEAVK
>NZ_CP010157.1|WP_000420644.1|2952632_2953553_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGTKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP010157.1|WP_000024569.1|2953552_2953858_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPSEIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP010157.1|WP_000209903.1|2954213_2954813_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVNGLENSIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLDLLSHLHFSLGEGTVPARRIDGLRQKTLTALREWLPEFAARCRQYDSFGFYAALSQLLLVLVECDYQKR
>NZ_CP010157.1|WP_001063153.1|2954809_2957356_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKEGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKIHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYEQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGINAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVEQVTAFNGPVEMVAQCEYVPTSQVKS
>NZ_CP010157.1|WP_001230244.1|2957355_2958528_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_CP010157.1|WP_073507003.1|2960099_2961128_-|TMAO-reductase-system-periplasmic-protein-TorT
MRVLLFLLLSFFMLSAFSADNLLRWHDAQHYTVQASTPLKAKRAWKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWGAEAILLGSSTTSFPDLQKQVANLPVIELVNAIDAPHVKSRVGVPWFQMGYQPGRYLVQWAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQEMLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASDQMVWQGELAVEQAIRQLQGQSVSDNVSPPILVMTPKNADREHIRRSLSPGGFRPVYFYQHTSAAKK
>NZ_CP010157.1|WP_001054732.1|2961210_2963955_+|TMAO-reductase-system-sensor-histidine-kinase/response-regulator-TorS
MNLTLTRRLWMGFALMALLTLTSTLVGWYNLRFISQVEKDNTQALIPTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQGFDTTAIEQQEQEISRSLRQQGELVGQRLQLRQQQQQLSQQIVAAADEIARLAQGQANNAATSAGATQAGIYDLIEQHQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRSQVATTLTTVSQYNDLLALYQQDSEISNRLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLLLLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKANQAKSAFLAAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVITNLLSNALRFTDEGHIILRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLLLRIATAPVPKTVNQAVRLDGLRLLLIEDNPLTQRITVEMLNSSGAQVVAVGNAAQALETLQNSEPFAVALVDFDLPDIDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQVNNDQPLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDNEKIKCAAHQLKSSCSSLGMRSASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKDLNAI

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Crispr_ID: NZ_CP010157_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010157_6

4040874-4041006

Orphan

Consensus_repeat	Method
ATCACCAATATTGAAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP010157_6

>merge|NZ_CP010157|6|4040874-4041006|PILER-CR
ATCACCAATATTGAAAATGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTCCTCACCAATATTGAAAACATGGCGTAGAAAAAAGAAATTTTCAATATTGTTTTATGGATCACCAATATTGAAAG

>NZ_CP010157|6|4|4040874-4041006|PILER-CR
ATCACCAATATTGAAAA	TGTCACACGCAGATAAATCCAACTTTCAATATTGTTAAGCTC
CTCACCAATATTGAAAA	CATGGCGTAGAAAAAAGAAATTTTCAATATTGTTTTATGG
ATCACCAATATTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010157.1\|WP_001306201.1\|4032371_4032560_-\|CcdB-family-protein	unknown	unknown	gnl\|CDD\|376629
NZ_CP010157.1\|WP_000543585.1\|4054012_4054834_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
NZ_CP010157.1\|WP_001126353.1\|4049169_4052391_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP010157.1\|WP_001183198.1\|4036045_4037377_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
NZ_CP010157.1\|WP_000349928.1\|4044060_4045278_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP010157.1\|WP_000333104.1\|4048513_4048909_-\|carnitine-metabolism-transcriptional-regulator-CaiF	unknown	unknown	gnl\|CDD\|183154
NZ_CP010157.1\|WP_000600725.1\|4035407_4035938_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	unknown	unknown	gnl\|CDD\|234852
NZ_CP010157.1\|WP_001317611.1\|4052408_4053557_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
NZ_CP010157.1\|WP_000347117.1\|4042800_4043943_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
NZ_CP010157.1\|WP_000122882.1\|4047803_4048394_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
NZ_CP010157.1\|WP_000203741.1\|4037435_4037723_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
NZ_CP010157.1\|WP_001317612.1\|4045350_4046904_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
NZ_CP010157.1\|WP_000377115.1\|4033552_4035415_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	unknown	unknown	gnl\|CDD\|235131
NZ_CP010157.1\|WP_000125563.1\|4032562_4032796_-\|type-II-toxin-antitoxin-system-CcdA-family-antitoxin	unknown	unknown	gnl\|CDD\|227619
NZ_CP010157.1\|WP_000787103.1\|4041255_4042770_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	unknown	unknown	gnl\|CDD\|179568
NZ_CP010157.1\|WP_001091515.1\|4039056_4039998_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120
NZ_CP010157.1\|WP_000624375.1\|4032881_4033361_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP010157.1\|WP_001695416.1\|4037719_4039006_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
NZ_CP010157.1\|WP_000692217.1\|4040012_4040783_-\|electron-transfer-flavoprotein-FixA	unknown	unknown	gnl\|CDD\|179569
NZ_CP010157.1\|WP_000004399.1\|4047012_4047798_+\|crotonobetainyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|179599

Protein	Function_ID	Function_description	E-value
NZ_CP010157.1\|WP_001306201.1\|4032371_4032560_-\|CcdB-family-protein	gnl\|CDD\|376629	pfam01845, CcdB, CcdB protein.	2.11512e-14
NZ_CP010157.1\|WP_000543585.1\|4054012_4054834_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	1.6349e-141
NZ_CP010157.1\|WP_001126353.1\|4049169_4052391_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP010157.1\|WP_001183198.1\|4036045_4037377_-\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.4298e-59
NZ_CP010157.1\|WP_000349928.1\|4044060_4045278_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP010157.1\|WP_000333104.1\|4048513_4048909_-\|carnitine-metabolism-transcriptional-regulator-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	5.69104e-74
NZ_CP010157.1\|WP_000600725.1\|4035407_4035938_-\|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF	gnl\|CDD\|234852	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF.	2.99389e-133
NZ_CP010157.1\|WP_001317611.1\|4052408_4053557_-\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
NZ_CP010157.1\|WP_000347117.1\|4042800_4043943_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
NZ_CP010157.1\|WP_000122882.1\|4047803_4048394_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	4.35289e-143
NZ_CP010157.1\|WP_000203741.1\|4037435_4037723_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
NZ_CP010157.1\|WP_001317612.1\|4045350_4046904_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
NZ_CP010157.1\|WP_000377115.1\|4033552_4035415_-\|glutathione-regulated-potassium-efflux-system-protein-KefC	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP010157.1\|WP_000125563.1\|4032562_4032796_-\|type-II-toxin-antitoxin-system-CcdA-family-antitoxin	gnl\|CDD\|227619	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only].	3.42915e-23
NZ_CP010157.1\|WP_000787103.1\|4041255_4042770_+\|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
NZ_CP010157.1\|WP_001091515.1\|4039056_4039998_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0
NZ_CP010157.1\|WP_000624375.1\|4032881_4033361_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.07206e-127
NZ_CP010157.1\|WP_001695416.1\|4037719_4039006_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
NZ_CP010157.1\|WP_000692217.1\|4040012_4040783_-\|electron-transfer-flavoprotein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	2.42827e-170
NZ_CP010157.1\|WP_000004399.1\|4047012_4047798_+\|crotonobetainyl-CoA-hydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	6.92249e-179

>NZ_CP010157.1|WP_000692217.1|4040012_4040783_-|electron-transfer-flavoprotein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASVLAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>NZ_CP010157.1|WP_001091515.1|4039056_4039998_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLSGKPDERMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLNAAVSNDASAVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDVAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>NZ_CP010157.1|WP_001695416.1|4037719_4039006_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGLINLIKDGMKGVTVL
>NZ_CP010157.1|WP_000203741.1|4037435_4037723_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>NZ_CP010157.1|WP_001183198.1|4036045_4037377_-|MFS-transporter
MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMG
>NZ_CP010157.1|WP_000600725.1|4035407_4035938_-|glutathione-regulated-potassium-efflux-system-oxidoreductase-KefF
MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNIDIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVFSHGWAYGHGGTALHGKHLLWAVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQARHYKQRLLEWQEAHHG
>NZ_CP010157.1|WP_000377115.1|4033552_4035415_-|glutathione-regulated-potassium-efflux-system-protein-KefC
MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLGLFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAIPLVAMIPLLAASSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREVFSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLFFIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQGSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSSEEAREADEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQAGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTKARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS
>NZ_CP010157.1|WP_000624375.1|4032881_4033361_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGRHTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP010157.1|WP_000125563.1|4032562_4032796_-|type-II-toxin-antitoxin-system-CcdA-family-antitoxin
MTAKRTTQSVTVTVDRELVNRARDAGLNMSATLTVALNAELKKHAAIRWREENAEAIAALNQLADETGCFSDEYRSF
>NZ_CP010157.1|WP_001306201.1|4032371_4032560_-|CcdB-family-protein
MQFTVYRSRGRNAAFPFVIDVTSDIIGEINRRIVIPLTPIERFIRIRPPERLNTILLLVDGS
>NZ_CP010157.1|WP_000787103.1|4041255_4042770_+|L-carnitine/gamma-butyrobetaine-antiport-BCCT-transporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>NZ_CP010157.1|WP_000347117.1|4042800_4043943_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>NZ_CP010157.1|WP_000349928.1|4044060_4045278_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNVMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>NZ_CP010157.1|WP_001317612.1|4045350_4046904_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSSGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESTWILQNSQACLLVTSAQFYPMYQQIQQEDASQLRHICLTDMALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQNYRATITECIPMMIRTLMVQPLSANDRQHCLREVMFYLNLSEQEKDAFCERFSVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>NZ_CP010157.1|WP_000004399.1|4047012_4047798_+|crotonobetainyl-CoA-hydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGVVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>NZ_CP010157.1|WP_000122882.1|4047803_4048394_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFRGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR
>NZ_CP010157.1|WP_000333104.1|4048513_4048909_-|carnitine-metabolism-transcriptional-regulator-CaiF
MCEGCVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>NZ_CP010157.1|WP_001126353.1|4049169_4052391_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLHAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>NZ_CP010157.1|WP_001317611.1|4052408_4053557_-|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEPYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>NZ_CP010157.1|WP_000543585.1|4054012_4054834_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAIKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP038506	Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence	11835-11866	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP019283	Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence	42147-42178	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	CP042641	Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence	36520-36551	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP034821	Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence	1557-1588	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP027443	Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence	9506-9537	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	94756-94787	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP027223	Escherichia coli strain 2015C-3101 plasmid unnamed2	65534-65565	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP030188	Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence	61916-61947	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP027590	Escherichia coli strain 2014C-3011 plasmid unnamed2	64165-64196	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP039862	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence	20286-20317	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP033632	Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence	119284-119315	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_AP018798	Escherichia coli strain E2855 plasmid pE2855-2, complete sequence	85099-85130	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	CP012494	Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence	46688-46719	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	CP027320	Escherichia coli strain 2014C-3084 plasmid unnamed1	42116-42147	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NC_013370	Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence	87237-87268	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP026475	Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence	81853-81884	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	MN510445	Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence	70500-70531	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	MN510447	Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence	47861-47892	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP012491	Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence	62997-63028	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	MH422554	Escherichia phage P1, complete genome	87194-87225	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NC_050152	Enterobacteria phage P7, complete genome	93995-94026	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	MH445380	Escherichia virus P1 isolate transconjugant 2(L-II), complete genome	58645-58676	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NC_031129	Salmonella phage SJ46, complete genome	77363-77394	0	1.0
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	MH445381	Escherichia virus P1, complete genome	56870-56901	0	1.0
NZ_CP010157_5	5.1\|2949486\|40\|NZ_CP010157\|CRISPRCasFinder	2949486-2949525	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_CP010157_6	6.1\|4040891\|42\|NZ_CP010157\|PILER-CR	4040891-4040932	42	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141085-141126	1	0.976
NZ_CP010157_6	6.2\|4040950\|40\|NZ_CP010157\|PILER-CR	4040950-4040989	40	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	141028-141067	1	0.975
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_CP032392	Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence	28190-28221	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_CP022965	Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal2, complete sequence	29440-29471	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NC_007208	Salmonella enterica OU7025 plasmid pOU1113, complete sequence	19749-19780	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_HG970001	Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence	38393-38424	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_CP032386	Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence	3653-3684	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_CP032388	Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_1, complete sequence	42554-42585	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_CP030208	Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence	4890-4921	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_CP032450	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence	68762-68793	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NC_011204	Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence	31020-31051	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NC_019106	Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence	75580-75611	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NC_019112	Salmonella enterica subsp. enterica serovar Pullorum plasmid pSPUV, complete sequence	20322-20353	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_CP012348	Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence	42630-42661	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_CP019180	Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence	59477-59508	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_CP032394	Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence	17037-17068	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NC_010422	Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence	19784-19815	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_CP032381	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence	47366-47397	2	0.938
NZ_CP010157_3	3.19\|1174313\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174313-1174344	32	NZ_CP032447	Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence	58031-58062	2	0.938
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	17440-17471	2	0.938
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP017632	Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence	122310-122341	2	0.938
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP030285	Escherichia coli strain E308 plasmid pLKSZ04, complete sequence	6029-6060	2	0.938
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	NZ_CP036204	Escherichia coli strain L725 plasmid punnamed2, complete sequence	15121-15152	2	0.938
NZ_CP010157_3	3.23\|1174557\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174557-1174588	32	MN510446	Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence	131402-131433	2	0.938
NZ_CP010157_4	4.1\|2349083\|38\|NZ_CP010157\|CRISPRCasFinder	2349083-2349120	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP044141	Escherichia coli O157 strain AR-0430 plasmid pAR-0430-4	20912-20943	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP027575	Escherichia coli strain 2013C-4081 plasmid unnamed2	2888-2919	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP023368	Escherichia coli strain 1428 plasmid p48, complete sequence	16047-16078	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	AP012531	Stx2-converting phage Stx2a_F422 proviral DNA, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	LC487997	Stx2-converting phage Stx2a F578 genes for Shiga toxin 2 production region, complete sequence	4171-4202	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NC_004813	Enterobacteria phage BP-4795, complete genome	2984-3015	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682385	Escherichia phage PA33, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682382	Escherichia phage PA29, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682389	Escherichia phage PA45, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682383	Escherichia phage PA30, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NC_000924	Enterobacteria phage 933W, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NC_049924	Stx2-converting phage Stx2a_F451 proviral DNA, complete genome	7343-7374	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NC_004914	Stx2 converting phage II DNA, complete genome	36072-36103	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682375	Escherichia phage PA11, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682387	Escherichia phage PA42, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	AF125520	Bacteriophage 933W, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KJ909655	Escherichia Stx1-converting recombinant phage HUN/2013, complete genome	27408-27439	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KU238068	Stx converting phage vB_EcoS_P32, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KU238070	Stx converting phage vB_EcoS_ST2-8624, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682384	Escherichia phage PA32, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682386	Escherichia phage PA36, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682376	Escherichia phage PA12, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	AP000422	Enterobacteria phage VT2-Sakai genomic DNA, prophage inserted region in Escherichia coli O157:H7	4738-4769	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682391	Escherichia phage PA51, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	LC487996	Stx2-converting phage Stx2a 981509 genes for Shiga toxin 2 production region, complete sequence	6655-6686	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682388	Escherichia phage PA44, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	AP004402	Stx2 converting phage I DNA, complete genome	35932-35963	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NC_008464	Stx2-converting phage 86, complete genome	43118-43149	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682372	Escherichia phage PA4, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682377	Escherichia phage PA16, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NC_000902	Enterobacteria phage VT2-Sakai, complete genome	4183-4214	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	AP000363	Enterobacteria phage VT2-Sakai proviral DNA, complete genome	4183-4214	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	JQ182728	Enterobacteria phage mEp460, complete genome	27610-27641	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682380	Escherichia phage PA27, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	AP005153	Stx1 converting phage DNA, complete genome	36072-36103	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KF030445	Escherichia phage 1720a-02, complete genome	43933-43964	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682379	Escherichia phage PA21, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682373	Escherichia phage PA5, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	AB255436	Stx2-converting phage 86 DNA, complete genome	43118-43149	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682378	Escherichia phage PA18, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KU238069	Stx converting phage vB_EcoS_P22, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682390	Escherichia phage PA50, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	AJ556162	Phage BP-4795 complete genome	2984-3015	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NC_010237	Enterobacteria phage Min27, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	KP682392	Escherichia phage PA52, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NC_049942	Escherichia phage JLK-2012, complete sequence	3791-3822	4	0.875
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	AP012529	Stx2-converting phage Stx2a_F403 proviral DNA, complete genome	4184-4215	4	0.875
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NZ_CP022140	Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence	27735-27766	6	0.812
NZ_CP010157_3	3.12\|1173886\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173886-1173917	32	NZ_CP015205	Rhodococcus sp. 008 plasmid pR8C2, complete sequence	47221-47252	7	0.781
NZ_CP010157_3	3.12\|1173886\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173886-1173917	32	NZ_CP025960	Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence	25136-25167	7	0.781
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_LT904880	Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3	100861-100892	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_LT904895	Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2	32455-32486	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP012254	Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence	90639-90670	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029647	Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence	24048-24079	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_LT904853	Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2	2158-2189	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NC_003385	Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence	69550-69581	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029859	Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence	33422-33453	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029847	Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence	64890-64921	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029916	Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence	3001-3032	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029893	Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence	30210-30241	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029876	Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence	21803-21834	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029884	Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence	5429-5460	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029961	Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence	76887-76918	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029849	Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence	9632-9663	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029857	Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence	17697-17728	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029929	Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence	73527-73558	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029865	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence	87633-87664	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_LT883154	Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2	32810-32841	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029905	Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence	30728-30759	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029851	Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence	44207-44238	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP040567	Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence	17468-17499	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029889	Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence	17968-17999	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029891	Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence	18575-18606	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029898	Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence	21136-21167	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029951	Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence	47286-47317	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029867	Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence	33258-33289	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029901	Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence	32901-32932	8	0.75
NZ_CP010157_2	2.5\|1147241\|32\|NZ_CP010157\|CRISPRCasFinder,CRT	1147241-1147272	32	NZ_CP029921	Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence	100446-100477	8	0.75
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NZ_KP453775	Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence	70246-70277	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_KX426227	Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence	54048-54079	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	CP033569	Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence	260851-260882	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP033130	Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence	31060-31091	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	CP033531	Acinetobacter pittii strain 2014S07-126 plasmid p2014S07-126-1, complete sequence	55435-55466	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP042557	Acinetobacter baumannii strain E47 plasmid pE47_001, complete sequence	166438-166469	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP010351	Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence	184349-184380	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP029396	Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence	76700-76731	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP048828	Acinetobacter baumannii strain ABF9692 plasmid pABF9692, complete sequence	206203-206234	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP032285	Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence	199264-199295	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP042365	Acinetobacter pittii strain C54 plasmid pC54_001, complete sequence	97622-97653	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_MK134375	Acinetobacter baumannii strain 34AB plasmid p34AB, complete sequence	52241-52272	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP038010	Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence	158490-158521	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP043053	Acinetobacter pittii strain AP43 plasmid pAP43-OXA58-NDM1, complete sequence	87517-87548	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_MH220285	Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence	12023-12054	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_MH220287	Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence	17499-17530	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_CP043309	Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence	253107-253138	8	0.75
NZ_CP010157_3	3.9\|1173703\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173703-1173734	32	NZ_MH220286	Acinetobacter ursingii strain RIVM0051 plasmid pRIVM0051_IMP-4, complete sequence	12023-12054	8	0.75
NZ_CP010157_3	3.17\|1174191\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174191-1174222	32	NC_009717	Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence	288380-288411	8	0.75
NZ_CP010157_3	3.17\|1174191\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174191-1174222	32	NZ_CP010657	Phaeobacter piscinae strain P71 plasmid pP71_a, complete sequence	57627-57658	8	0.75
NZ_CP010157_3	3.20\|1174374\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174374-1174405	32	NZ_CP042263	Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence	173595-173626	8	0.75
NZ_CP010157_2	2.6\|1147302\|32\|NZ_CP010157\|CRISPRCasFinder,CRT,PILER-CR	1147302-1147333	32	AP014399	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, * SEQUENCING IN PROGRESS *, 2 ordered pieces	35411-35442	9	0.719
NZ_CP010157_2	2.6\|1147302\|32\|NZ_CP010157\|CRISPRCasFinder,CRT,PILER-CR	1147302-1147333	32	AP013383	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13	29583-29614	9	0.719
NZ_CP010157_2	2.7\|1147363\|32\|NZ_CP010157\|CRISPRCasFinder,CRT,PILER-CR	1147363-1147394	32	NZ_CP021994	Cryobacterium sp. LW097 plasmid unnamed1	33387-33418	9	0.719
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NZ_CP011404	Lactobacillus salivarius str. Ren plasmid pR1, complete sequence	100759-100790	9	0.719
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	48192-48223	9	0.719
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NZ_CP020859	Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence	248214-248245	9	0.719
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NZ_CP017108	Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence	140326-140357	9	0.719
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NZ_CP017110	Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence	20889-20920	9	0.719
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NZ_CP029460	Clostridium novyi strain 150557 plasmid pCN2, complete sequence	45232-45263	9	0.719
NZ_CP010157_3	3.17\|1174191\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174191-1174222	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	418665-418696	9	0.719
NZ_CP010157_2	2.8\|1147424\|32\|NZ_CP010157\|CRISPRCasFinder,CRT,PILER-CR	1147424-1147455	32	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	1163456-1163487	10	0.688
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NC_018511	Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence	60-91	10	0.688
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NC_001446	Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence	4548-4579	10	0.688
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NZ_CP009345	Bacillus thuringiensis HD1002 plasmid 6, complete sequence	1165-1196	10	0.688
NZ_CP010157_3	3.1\|1173215\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173215-1173246	32	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	105460-105491	10	0.688
NZ_CP010157_3	3.13\|1173947\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173947-1173978	32	NZ_CP031468	Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence	166221-166252	10	0.688
NZ_CP010157_3	3.13\|1173947\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1173947-1173978	32	NZ_CP014580	Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence	2849-2880	10	0.688
NZ_CP010157_3	3.17\|1174191\|32\|NZ_CP010157\|PILER-CR,CRISPRCasFinder,CRT	1174191-1174222	32	NZ_CP048816	Caulobacter rhizosphaerae strain KCTC 52515 plasmid unnamed	34863-34894	10	0.688
NZ_CP010157_6	6.2\|4040950\|40\|NZ_CP010157\|PILER-CR	4040950-4040989	40	NZ_CP034685	Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence	143235-143274	11	0.725

1. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038506 (Escherichia coli strain 28Eco12 plasmid p28Eco12, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

2. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019283 (Escherichia coli strain 13P484A plasmid p13P484A-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

3. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to CP042641 (Escherichia coli strain NCYU-24-74 plasmid pNCYU-24-74-3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

4. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034821 (Salmonella sp. SSDFZ54 plasmid pTB502, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

5. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027443 (Escherichia coli strain 2013C-3252 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

6. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

7. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027223 (Escherichia coli strain 2015C-3101 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

8. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030188 (Salmonella enterica strain SA20094620 plasmid pSA20094620.3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

9. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027590 (Escherichia coli strain 2014C-3011 plasmid unnamed2) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

10. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039862 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

11. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033632 (Escherichia coli isolate ECCNB12-2 plasmid pTB-nb1, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

12. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018798 (Escherichia coli strain E2855 plasmid pE2855-2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

13. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to CP012494 (Escherichia coli strain CFSAN004177 plasmid pCFSAN004177G_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

14. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to CP027320 (Escherichia coli strain 2014C-3084 plasmid unnamed1) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

15. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_013370 (Escherichia coli O111:H- str. 11128 plasmid pO111_2, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

16. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026475 (Escherichia coli strain KBN10P04869 plasmid pKBN10P04869B, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

17. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to MN510445 (Escherichia coli strain JIE250 plasmid pJIE250_3, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

18. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to MN510447 (Escherichia coli strain TZ20_1P plasmid pTZ20_1P, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

19. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012491 (Escherichia coli strain CFSAN004176 plasmid pCFSAN004176P_03, complete sequence) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

20. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to MH422554 (Escherichia phage P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

21. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_050152 (Enterobacteria phage P7, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

22. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to MH445380 (Escherichia virus P1 isolate transconjugant 2(L-II), complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

23. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_031129 (Salmonella phage SJ46, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

24. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to MH445381 (Escherichia virus P1, complete genome) position: , mismatch: 0, identity: 1.0

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctgaaccgacattcatgt	Protospacer
********************************

25. spacer 5.1|2949486|40|NZ_CP010157|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcatttttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
***************.************************

26. spacer 6.1|4040891|42|NZ_CP010157|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.976

tgtcacacgcagataaatccaactttcaatattgttaagctc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttc	Protospacer
***************************************.**

27. spacer 6.2|4040950|40|NZ_CP010157|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.975

catggcgtagaaaaaagaaattttcaatattgttttatgg	CRISPR spacer
catggcgtagaaaaaagaaattttcaatattgctttatgg	Protospacer
********************************.*******

28. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032392 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 34981 plasmid p34981_2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

29. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022965 (Salmonella enterica subsp. enterica serovar Pullorum strain QJ-2D-Sal plasmid pQJDsal2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

30. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_007208 (Salmonella enterica OU7025 plasmid pOU1113, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

31. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG970001 (Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91 plasmid pSG, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

32. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032386 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N53043 plasmid pN53043_2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

33. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032388 (Salmonella enterica subsp. enterica serovar Dublin strain CVM N45955 plasmid pN45955_1, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

34. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030208 (Salmonella enterica strain SA19992307 plasmid pSA19992307.1, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

35. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032450 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69838 plasmid pSDU1-USMARC-69838, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

36. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_011204 (Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853 plasmid pCT02021853_74, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

37. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_019106 (Salmonella enterica subsp. enterica serovar Dublin plasmid pSD_77, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

38. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_019112 (Salmonella enterica subsp. enterica serovar Pullorum plasmid pSPUV, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

39. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012348 (Salmonella enterica subsp. enterica serovar Pullorum str. ATCC 9120 plasmid pCFSAN000725_01, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

40. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019180 (Salmonella enterica subsp. enterica serovar Dublin str. ATCC 39184 plasmid pATCC39184, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

41. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032394 (Salmonella enterica subsp. enterica serovar Dublin strain CVM 22453 plasmid p22453_2, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

42. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_010422 (Salmonella enterica subsp. enterica serovar Dublin plasmid pOU1115, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

43. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032381 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69807 plasmid pSDU2-USMARC-69807, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

44. spacer 3.19|1174313|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032447 (Salmonella enterica subsp. enterica serovar Dublin strain USMARC-69840 plasmid pSDU1-USMARC-69840, complete sequence) position: , mismatch: 2, identity: 0.938

tgggatgagcaaataacgtcgtttcctagaaa	CRISPR spacer
tgggatgagcgaataacgtcttttcctagaaa	Protospacer
**********.********* ***********

45. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

46. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017632 (Escherichia coli strain SLK172 plasmid pSLK172-1, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtgaaaacacgttctgaaccgacattcatgt	Protospacer
***.******** *******************

47. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030285 (Escherichia coli strain E308 plasmid pLKSZ04, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

48. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP036204 (Escherichia coli strain L725 plasmid punnamed2, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacggtctaaaccgtcattcatgt	Protospacer
****************.***** *********

49. spacer 3.23|1174557|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to MN510446 (Escherichia coli strain SvETEC plasmid pSvP1_F, complete sequence) position: , mismatch: 2, identity: 0.938

ggtaaaaacacggtctgaaccgacattcatgt	CRISPR spacer
ggtaaaaacacgttatgaaccgacattcatgt	Protospacer
************ * *****************

50. spacer 4.1|2349083|38|NZ_CP010157|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

51. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044141 (Escherichia coli O157 strain AR-0430 plasmid pAR-0430-4) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

52. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027575 (Escherichia coli strain 2013C-4081 plasmid unnamed2) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

53. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023368 (Escherichia coli strain 1428 plasmid p48, complete sequence) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

54. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to AP012531 (Stx2-converting phage Stx2a_F422 proviral DNA, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

55. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to LC487997 (Stx2-converting phage Stx2a F578 genes for Shiga toxin 2 production region, complete sequence) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

56. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_004813 (Enterobacteria phage BP-4795, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

57. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682385 (Escherichia phage PA33, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

58. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682382 (Escherichia phage PA29, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

59. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682389 (Escherichia phage PA45, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

60. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682383 (Escherichia phage PA30, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

61. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_000924 (Enterobacteria phage 933W, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

62. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_049924 (Stx2-converting phage Stx2a_F451 proviral DNA, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

63. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_004914 (Stx2 converting phage II DNA, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

64. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682375 (Escherichia phage PA11, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

65. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682387 (Escherichia phage PA42, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

66. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to AF125520 (Bacteriophage 933W, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

67. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KJ909655 (Escherichia Stx1-converting recombinant phage HUN/2013, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

68. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KU238068 (Stx converting phage vB_EcoS_P32, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

69. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KU238070 (Stx converting phage vB_EcoS_ST2-8624, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

70. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682384 (Escherichia phage PA32, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

71. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682386 (Escherichia phage PA36, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

72. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682376 (Escherichia phage PA12, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

73. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to AP000422 (Enterobacteria phage VT2-Sakai genomic DNA, prophage inserted region in Escherichia coli O157:H7) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

74. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682391 (Escherichia phage PA51, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

75. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to LC487996 (Stx2-converting phage Stx2a 981509 genes for Shiga toxin 2 production region, complete sequence) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

76. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682388 (Escherichia phage PA44, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

77. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to AP004402 (Stx2 converting phage I DNA, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

78. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_008464 (Stx2-converting phage 86, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

79. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682372 (Escherichia phage PA4, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

80. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682377 (Escherichia phage PA16, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

81. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_000902 (Enterobacteria phage VT2-Sakai, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

82. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to AP000363 (Enterobacteria phage VT2-Sakai proviral DNA, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

83. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to JQ182728 (Enterobacteria phage mEp460, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

84. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682380 (Escherichia phage PA27, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

85. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to AP005153 (Stx1 converting phage DNA, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

86. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KF030445 (Escherichia phage 1720a-02, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

87. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682379 (Escherichia phage PA21, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

88. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682373 (Escherichia phage PA5, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

89. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to AB255436 (Stx2-converting phage 86 DNA, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

90. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682378 (Escherichia phage PA18, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

91. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KU238069 (Stx converting phage vB_EcoS_P22, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

92. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682390 (Escherichia phage PA50, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

93. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to AJ556162 (Phage BP-4795 complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

94. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_010237 (Enterobacteria phage Min27, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

95. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to KP682392 (Escherichia phage PA52, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

96. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

97. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to AP012529 (Stx2-converting phage Stx2a_F403 proviral DNA, complete genome) position: , mismatch: 4, identity: 0.875

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
cttttcgtcaatcggtgcatatttgcgattaa	Protospacer
******.******** *************..*

98. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022140 (Salmonella enterica subsp. salamae serovar 55:k:z39 str. 1315K plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

cattgaa-aacattgcctttattttattttttg	CRISPR spacer
-attaaatcacattccctctattttattttttc	Protospacer
 ***.**  ***** ***.*************

99. spacer 3.12|1173886|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015205 (Rhodococcus sp. 008 plasmid pR8C2, complete sequence) position: , mismatch: 7, identity: 0.781

caataacgcagcatccaggaagctgtttccgc	CRISPR spacer
cgcgagcgcagcatcgaagaagctgtttccac	Protospacer
*.  *.********* *.************.*

100. spacer 3.12|1173886|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025960 (Rhodococcus qingshengii strain djl-6-2 plasmid pDJL1, complete sequence) position: , mismatch: 7, identity: 0.781

caataacgcagcatccaggaagctgtttccgc	CRISPR spacer
cgcgagcgcagcatcgaagaagctgtttccac	Protospacer
*.  *.********* *.************.*

101. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_LT904880 (Salmonella enterica subsp. enterica serovar Typhi strain ty3-193 genome assembly, plasmid: 3) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

102. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_LT904895 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12960 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

103. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP012254 (Cronobacter sakazakii strain NCTC 8155 plasmid pCS1, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttatca	Protospacer
******** *****.********  **  .*.

104. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029647 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_217186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

105. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_LT904853 (Salmonella enterica subsp. enterica serovar Typhi strain TY585 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

106. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NC_003385 (Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

107. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029859 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_285138 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

108. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029847 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_273110 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

109. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029916 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_202113 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

110. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029893 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_252143 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

111. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029876 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_227128 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

112. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029884 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_268186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

113. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029961 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_251131 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

114. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029849 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_211126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

115. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029857 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_286126 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

116. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029929 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_216103 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

117. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029865 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228157 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

118. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_LT883154 (Salmonella enterica subsp. enterica serovar Typhi strain ERL12148 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

119. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029905 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_231186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

120. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029851 (Salmonella enterica subsp. enterica serovar Typhi strain 343078_203125 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

121. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP040567 (Salmonella enterica subsp. enterica serovar Typhimurium strain SAP17-7299 plasmid pCFSAN059543, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

122. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029889 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_294172 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

123. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029891 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_253155 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

124. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029898 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_213147 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

125. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029951 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_205186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

126. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029867 (Salmonella enterica subsp. enterica serovar Typhi strain 343077_228140 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

127. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029901 (Salmonella enterica subsp. enterica serovar Typhi strain 343076_232188 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

128. spacer 2.5|1147241|32|NZ_CP010157|CRISPRCasFinder,CRT matches to NZ_CP029921 (Salmonella enterica subsp. enterica serovar Typhi strain 311189_282186 plasmid pHCM2, complete sequence) position: , mismatch: 8, identity: 0.75

aatgattgatataaatctgtgtacggtgtccg	CRISPR spacer
aatgattgttataagtctgtgtagcgttgttg	Protospacer
******** *****.********  **  ..*

129. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP453775 (Klebsiella pneumoniae strain ST11 plasmid pKP12226, complete sequence) position: , mismatch: 8, identity: 0.75

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgctaaaacattggctttatttaatttttta	Protospacer
.  . ********* ******** *******.

130. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX426227 (Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgagcttcaattggaccatatttgcgatcaa	Protospacer
 *   * *****.*** *************.*

131. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to CP033569 (Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

132. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033130 (Acinetobacter wuhouensis strain WCHAW010062 plasmid pOXA23_010062, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

133. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to CP033531 (Acinetobacter pittii strain 2014S07-126 plasmid p2014S07-126-1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

134. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042557 (Acinetobacter baumannii strain E47 plasmid pE47_001, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

135. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010351 (Acinetobacter johnsonii XBB1 plasmid pXBB1-9, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

136. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029396 (Acinetobacter defluvii strain WCHA30 plasmid pOXA58_010030, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

137. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048828 (Acinetobacter baumannii strain ABF9692 plasmid pABF9692, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

138. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032285 (Acinetobacter sp. WCHA55 plasmid pOXA58_010055, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

139. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042365 (Acinetobacter pittii strain C54 plasmid pC54_001, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

140. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK134375 (Acinetobacter baumannii strain 34AB plasmid p34AB, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

141. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038010 (Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

142. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043053 (Acinetobacter pittii strain AP43 plasmid pAP43-OXA58-NDM1, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

143. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220285 (Acinetobacter ursingii strain RIVM0002 plasmid pRIVM0002_IMP-4_171109_B03, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

144. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220287 (Acinetobacter ursingii strain RIVM0061 plasmid pRIVM0061_IMP-4_171109_B01, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

145. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043309 (Acinetobacter johnsonii strain Acsw19 plasmid pAcsw19-2, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

146. spacer 3.9|1173703|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH220286 (Acinetobacter ursingii strain RIVM0051 plasmid pRIVM0051_IMP-4, complete sequence) position: , mismatch: 8, identity: 0.75

cttttcatcaatcggagcatatttgcgatcga	CRISPR spacer
atgcgcttcaattggaccatatttgcgatcaa	Protospacer
 * . * *****.*** *************.*

147. spacer 3.17|1174191|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_009717 (Xanthobacter autotrophicus Py2 plasmid pXAUT01, complete sequence) position: , mismatch: 8, identity: 0.75

cgtggctgcgctggccgttgcagcagtttgat	CRISPR spacer
cctggccgcgcttgccgttgcagcaggaccgt	Protospacer
* ****.***** *************  . .*

148. spacer 3.17|1174191|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010657 (Phaeobacter piscinae strain P71 plasmid pP71_a, complete sequence) position: , mismatch: 8, identity: 0.75

cgtggctgcgctggccgttgcagcagtttgat--	CRISPR spacer
tgtggcggcgctggcagttgcagcg--ctggttc	Protospacer
.***** ******** ********.  .**.*

149. spacer 3.20|1174374|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042263 (Litoreibacter sp. LN3S51 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ccgccgtgccagtgatcctcatacggcctgtt	CRISPR spacer
cggtgcagccagtgatcgtcatacagcctgtg	Protospacer
* *.   ********** ******.******

150. spacer 2.6|1147302|32|NZ_CP010157|CRISPRCasFinder,CRT,PILER-CR matches to AP014399 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C110A-MedDCM-OCT-S26-C20, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 9, identity: 0.719

ctaggataaattaaaagacaaaattgcagcaa	CRISPR spacer
gtcagataaattaaaagagataattgcaaatt	Protospacer
 * .************** * *******.

151. spacer 2.6|1147302|32|NZ_CP010157|CRISPRCasFinder,CRT,PILER-CR matches to AP013383 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C110A-MedDCM-OCT-S24-C13) position: , mismatch: 9, identity: 0.719

ctaggataaattaaaagacaaaattgcagcaa	CRISPR spacer
gtcagataaattaaaagagataattgcaaatt	Protospacer
 * .************** * *******.

152. spacer 2.7|1147363|32|NZ_CP010157|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021994 (Cryobacterium sp. LW097 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gagcgaccagtatcaagatcgacaggttttgc	CRISPR spacer
gagcgaccagcagcaagatcgaccagacctca	Protospacer
**********.* ********** .* ..*

153. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011404 (Lactobacillus salivarius str. Ren plasmid pR1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

154. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

155. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020859 (Lactobacillus salivarius strain ZLS006 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

156. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017108 (Lactobacillus salivarius strain CICC23174 plasmid pLS_1 sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

157. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017110 (Lactobacillus salivarius strain CICC23174 plasmid pLS_3, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tttaataaacattgccttaattttattattaa	Protospacer
. * . ************ ******** ** .

158. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029460 (Clostridium novyi strain 150557 plasmid pCN2, complete sequence) position: , mismatch: 9, identity: 0.719

cattgaaaacattgcctttattttattttttg	CRISPR spacer
aaaaaagaacattgtatttattttatttttaa	Protospacer
 *  .*.*******. ************** .

159. spacer 3.17|1174191|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

cgtggctgcgctggccgttgcagcagtttgat	CRISPR spacer
ggtggcggcgctggccgctgcagcggcgggca	Protospacer
 ***** **********.******.*.  *

160. spacer 2.8|1147424|32|NZ_CP010157|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 10, identity: 0.688

atcgatatgtacgttagcgaggggatcacgca	CRISPR spacer
ggcgatatttacgttagcgacgggactgacct	Protospacer
. ****** *********** ****...  *

161. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_018511 (Bacillus thuringiensis HD-789 plasmid pBTHD789-5, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

162. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NC_001446 (Bacillus thuringiensis sv israelensis HI4 plasmid pTX14-3, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

163. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009345 (Bacillus thuringiensis HD1002 plasmid 6, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
tcgttcttacatttcttttattttattttttt	Protospacer
.  *    ***** *.***************

164. spacer 3.1|1173215|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 10, identity: 0.688

cattgaaaacattgcctttattttattttttg	CRISPR spacer
accttaaaacatttcctttgttttatttagat	Protospacer
  .* ******** *****.********

165. spacer 3.13|1173947|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031468 (Paraburkholderia caffeinilytica strain CF1 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.688

cgatcggtgaagaggtccgcgaaatactcact	CRISPR spacer
taatcggtgacgacgtccgcgaaatcggagat	Protospacer
..******** ** ***********    . *

166. spacer 3.13|1173947|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014580 (Burkholderia sp. OLGA172 plasmid pOLGA1, complete sequence) position: , mismatch: 10, identity: 0.688

cgatcggtgaagaggtccgcgaaatactcact	CRISPR spacer
taatcggtgacgacgtccgcgaaatcggagat	Protospacer
..******** ** ***********    . *

167. spacer 3.17|1174191|32|NZ_CP010157|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048816 (Caulobacter rhizosphaerae strain KCTC 52515 plasmid unnamed) position: , mismatch: 10, identity: 0.688

cgtggctgcgctggccgttgcagcagtttgat	CRISPR spacer
cgtggctgcgctggccgtggccgcttgccagg	Protospacer
****************** ** **   ....

168. spacer 6.2|4040950|40|NZ_CP010157|PILER-CR matches to NZ_CP034685 (Bacillus sp. BD59S plasmid pBTBD59S2, complete sequence) position: , mismatch: 11, identity: 0.725

catggcgtagaaaaaagaaattttcaatattgttttatgg-	CRISPR spacer
aacacaatagaaaaaagaaattttcaaccttg-tttatact	Protospacer
 *..  .********************. *** *****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

52431 : 61366

Stx2-converting_phage(66.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001282144.1\|52431_52821_+	IS66 family insertion sequence hypothetical protein	B6DZU5	Stx2-converting_phage	3.9e-67	98.4
WP_000612556.1\|52817_53165_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.8e-61	99.1
WP_001593684.1\|53260_54853_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.9e-181	63.4
WP_000624717.1\|54883_55234_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	1.2e-40	66.4
WP_000422741.1\|55230_55656_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_001360336.1\|57868_61366_+	autotransporter outer membrane beta-barrel domain-containing protein	A0A2L1IV18	Escherichia_phage	2.7e-98	34.8

DBSCAN-SWA_2

842230 : 901914

uncultured_marine_virus(22.22%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001034482.1\|842230_846787_+\|protease	lipoprotein metalloprotease SslE	NA	NA	NA	NA
WP_001318036.1\|846950_847760_+	prepilin peptidase PppA	NA	NA	NA	NA
WP_001298257.1\|847825_848236_+	type II secretion system pilot lipoprotein GspS-beta	NA	NA	NA	NA
WP_001696202.1\|848253_849213_+	type II secretion system protein GspC	NA	NA	NA	NA
WP_001318034.1\|849242_851303_+	type II secretion system secretin GspD	NA	NA	NA	NA
WP_000249319.1\|851302_852796_+	type II secretion system ATPase GspE	NA	NA	NA	NA
WP_001173415.1\|852795_854019_+	type II secretion system inner membrane protein GspF	NA	NA	NA	NA
WP_001087296.1\|854035_854491_+	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_001115149.1\|854494_855058_+	type II secretion system minor pseudopilin GspH	NA	NA	NA	NA
WP_000820091.1\|855054_855426_+	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA
WP_001318033.1\|855422_856028_+	type II secretion system minor pseudopilin GspJ	NA	NA	NA	NA
WP_073506912.1\|856024_857002_+	type II secretion system minor pseudopilin GspK	NA	NA	NA	NA
WP_000097200.1\|856998_858177_+	type II secretion system protein GspL	NA	NA	NA	NA
WP_000942807.1\|858178_858715_+	GspM family type II secretion system protein YghD	NA	NA	NA	NA
WP_039004748.1\|858994_859837_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_023563519.1\|859921_860119_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_057109034.1\|860340_860718_-	toxin	NA	NA	NA	NA
WP_001285610.1\|860807_861176_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_057109035.1\|861557_862034_-	RadC family protein	NA	NA	NA	NA
WP_057109036.1\|862049_862529_-	antirestriction protein	NA	NA	NA	NA
WP_000997937.1\|862628_862769_+	hypothetical protein	NA	NA	NA	NA
WP_001175153.1\|862794_863613_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	1.4e-47	39.5
WP_073506913.1\|863702_863936_-	DUF905 family protein	NA	NA	NA	NA
WP_073506914.1\|863941_864619_-	hypothetical protein	NA	NA	NA	NA
WP_000010392.1\|864737_865622_-	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_000147743.1\|865806_866937_+	hypothetical protein	NA	NA	NA	NA
WP_154675835.1\|868127_868301_-	hypothetical protein	NA	NA	NA	NA
WP_001075462.1\|868480_869212_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_001100705.1\|869721_870174_+	N-acetyltransferase	NA	NA	NA	NA
WP_164965929.1\|870616_871845_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.1e-171	95.7
WP_000792543.1\|872037_874086_+	TonB-dependent siderophore receptor IreA	A0A0P0I887	Acinetobacter_phage	1.1e-11	33.5
WP_001126822.1\|877816_878383_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_000991576.1\|878640_879213_+	hypothetical protein	NA	NA	NA	NA
WP_000958152.1\|879281_879518_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_001167473.1\|879784_880333_+	hypothetical protein	NA	NA	NA	NA
WP_001349534.1\|880351_880600_-	osmoprotectant transport activator ProQ	Q2A0A1	Sodalis_phage	8.3e-07	39.1
WP_001323513.1\|880668_880860_-	hypothetical protein	NA	NA	NA	NA
WP_032346664.1\|882452_882566_+\|transposase	transposase	Q6H9S5	Enterobacteria_phage	1.2e-08	74.3
WP_000919994.1\|883389_883956_+	hypothetical protein	NA	NA	NA	NA
WP_001043260.1\|884196_885012_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_001445143.1\|885294_885546_-	hypothetical protein	NA	NA	NA	NA
WP_001349530.1\|886166_886445_-	FaeA/PapI family transcriptional regulator	NA	NA	NA	NA
WP_000930062.1\|886867_887182_+	major pilus subunit operon regulatory protein PapB	NA	NA	NA	NA
WP_021112574.1\|887771_888980_+\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	5.2e-235	99.8
WP_035689358.1\|888989_889361_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000428546.1\|889493_890087_+	tetracyline resistance-associated transcriptional repressor TetC	NA	NA	NA	NA
WP_001089068.1\|890199_891405_-	tetracycline efflux MFS transporter Tet(B)	A0A2H4UVM2	Bodo_saltans_virus	3.0e-09	24.4
WP_000088605.1\|891486_892110_+	tetracycline resistance transcriptional repressor TetR(B)	NA	NA	NA	NA
WP_001284954.1\|892087_892774_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000460651.1\|892781_893168_-	hypothetical protein	NA	NA	NA	NA
WP_000562370.1\|893160_893481_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_000599533.1\|893924_895130_+	sodium/glutamate symporter	NA	NA	NA	NA
WP_021112574.1\|895495_896704_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	5.2e-235	99.8
WP_000654934.1\|897800_900311_+	P fimbrial usher protein PapC	NA	NA	NA	NA
WP_073506915.1\|900342_901914_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	9.9e-170	58.7

DBSCAN-SWA_3

1190971 : 1198111

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278992.1\|1190971_1191610_-	aldolase	A0A077SK32	Escherichia_phage	1.8e-82	74.5
WP_000590398.1\|1191606_1192869_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_000848000.1\|1192865_1193774_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.5e-117	76.5
WP_001318002.1\|1193969_1194737_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	7.4e-70	57.4
WP_001141285.1\|1194787_1195444_-	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	4.3e-50	46.1
WP_001272914.1\|1195549_1198111_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	7.8e-31	20.7

DBSCAN-SWA_4

1787161 : 1796606

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569336.1\|1787161_1788088_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	4.8e-23	30.8
WP_000783120.1\|1788092_1788824_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1788804_1788912_-	protein YohO	NA	NA	NA	NA
WP_001240401.1\|1788971_1789703_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001295431.1\|1789924_1791610_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1791606_1792326_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1792372_1792843_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001295429.1\|1792883_1793345_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_023154469.1\|1793469_1795473_-	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.4
WP_023154468.1\|1795469_1796606_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	3.6e-161	97.1

DBSCAN-SWA_5

2005031 : 2058579

Escherichia_phage(42.22%)

portal,transposase,tail,head,holin,protease,capsid,integrase,terminase

attL 1986833:1986849|attR 2016416:2016432

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1986833:1986849	attL	NA	NA	NA	NA
WP_000480162.1\|2005031_2006294_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	2.6e-72	38.8
WP_001300801.1\|2006631_2007429_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_000533618.1\|2007664_2008690_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	3.4e-102	57.9
WP_000096344.1\|2008689_2008893_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_073506949.1\|2008951_2011423_-	exonuclease	K7PLW7	Enterobacteria_phage	3.8e-59	60.9
WP_001090551.1\|2011502_2011706_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449185.1\|2011702_2011891_-	hypothetical protein	NA	NA	NA	NA
WP_021522780.1\|2012290_2012455_+	hypothetical protein	NA	NA	NA	NA
WP_001171942.1\|2012458_2012677_-	hypothetical protein	NA	NA	NA	NA
WP_042046576.1\|2012748_2013048_-	hypothetical protein	NA	NA	NA	NA
WP_000362153.1\|2013374_2013794_-	hypothetical protein	K7PK07	Enterobacteria_phage	8.8e-25	65.1
WP_000391950.1\|2013894_2014176_+	helix-turn-helix domain-containing protein	K7PHA1	Enterobacteria_phage	6.5e-24	72.6
WP_000693888.1\|2014159_2014585_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000095673.1\|2014607_2015570_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.6e-69	51.2
WP_000788950.1\|2015576_2016323_+	ATP-binding protein	A0A088CBP4	Shigella_phage	4.0e-113	83.8
WP_072692275.1\|2016442_2017114_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	3.2e-69	63.2
2016416:2016432	attR	NA	NA	NA	NA
WP_001151165.1\|2017129_2017555_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.8e-63	93.3
WP_000150294.1\|2017729_2018395_+	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_000813254.1\|2018631_2018787_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000737636.1\|2018930_2019323_+	hypothetical protein	NA	NA	NA	NA
WP_024175747.1\|2019619_2019898_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.1e-12	50.0
WP_024195967.1\|2019899_2020949_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.4e-108	54.6
WP_001217424.1\|2020961_2021321_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	8.3e-40	67.5
WP_073506950.1\|2021317_2022007_+	antiterminator	I6PDF8	Cronobacter_phage	5.3e-59	50.6
WP_000839572.1\|2022803_2023019_+\|holin	class II holin family protein	M1FN85	Enterobacteria_phage	5.3e-34	98.6
WP_000193292.1\|2023023_2023338_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	4.1e-51	98.1
WP_001274714.1\|2023393_2023927_+	lysozyme	K7PLY1	Enterobacteria_phage	5.1e-102	99.4
WP_001228685.1\|2024143_2024329_+	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	6.4e-20	80.3
WP_001114684.1\|2024569_2025055_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000671993.1\|2025299_2025500_+	hypothetical protein	NA	NA	NA	NA
WP_001140099.1\|2025507_2025858_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	1.2e-64	98.3
WP_001312917.1\|2026005_2026488_+\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	4.3e-84	97.5
WP_001140903.1\|2026487_2028245_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.7
WP_000478564.1\|2028256_2028439_+	hypothetical protein	A0A1B5FP99	Escherichia_phage	2.5e-24	95.0
WP_000466255.1\|2028438_2029680_+\|portal	phage portal protein	U5P411	Shigella_phage	2.0e-242	99.8
WP_001193631.1\|2029657_2030308_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	2.5e-119	100.0
WP_000257522.1\|2030322_2031528_+\|capsid	phage major capsid protein	A0A1B5FPI9	Escherichia_phage	1.0e-222	99.3
WP_000601355.1\|2031578_2031767_+	hypothetical protein	A0A1B5FP98	Escherichia_phage	7.2e-27	100.0
WP_000983037.1\|2031778_2032084_+\|head,tail	phage gp6-like head-tail connector protein	A0A1B5FP86	Escherichia_phage	9.2e-40	100.0
WP_001147820.1\|2032092_2032431_+\|head	phage head closure protein	A0A1B5FP90	Escherichia_phage	1.6e-56	99.1
WP_000347790.1\|2032430_2032877_+	HK97 gp10 family phage protein	S4TR46	Salmonella_phage	2.3e-63	80.4
WP_001209399.1\|2032873_2033218_+	DUF3168 domain-containing protein	A0A1B5FP84	Escherichia_phage	4.2e-57	100.0
WP_000097533.1\|2033277_2033982_+	hypothetical protein	A0A1B5FP82	Escherichia_phage	1.5e-117	96.2
WP_000164661.1\|2033996_2034368_+\|tail	phage tail assembly chaperone	A0A1B5FP91	Escherichia_phage	6.5e-64	100.0
WP_000978930.1\|2034391_2034670_+	DUF4035 domain-containing protein	A0A1B5FP87	Escherichia_phage	3.6e-43	97.8
WP_073507074.1\|2034716_2037944_+\|tail	phage tail tape measure protein	A0A1B5FPE2	Escherichia_phage	0.0e+00	94.7
WP_001330090.1\|2037921_2038278_+\|tail	phage tail protein	A0A0P0ZDL9	Stx2-converting_phage	2.8e-40	66.7
WP_001152456.1\|2038277_2038976_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	4.4e-130	96.6
WP_032241748.1\|2038980_2039724_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.7e-148	97.2
WP_000090949.1\|2039660_2040263_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.6e-86	84.7
WP_048236358.1\|2040323_2043719_+	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	90.5
WP_001233121.1\|2043786_2044386_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	7.2e-105	93.0
WP_073506951.1\|2044450_2047864_+\|tail	prophage tail fiber N-terminal domain-containing protein	X2KTY7	Enterobacteria_phage	1.8e-11	37.3
WP_048236353.1\|2047863_2048445_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.0e-100	92.7
WP_001007767.1\|2050035_2050686_-	metal-binding protein ZinT	NA	NA	NA	NA
WP_001240090.1\|2050942_2051578_-	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_000740111.1\|2051578_2052583_-	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_000920132.1\|2052691_2053105_-	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_001340597.1\|2053237_2053909_+	response regulator transcription factor HprR	W8CYM9	Bacillus_phage	1.4e-32	35.6
WP_000826785.1\|2053908_2055267_+	two-component system sensor histidine kinase HprS	Q8QKV7	Ectocarpus_siliculosus_virus	3.0e-05	19.4
WP_000218222.1\|2055374_2056226_-	protein deglycase HchA	NA	NA	NA	NA
WP_088895425.1\|2057350_2058579_-\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.3e-177	99.3

DBSCAN-SWA_6

3155067 : 3249020

106

Enterobacteria_phage(47.14%)

transposase,portal,tail,head,lysis,protease,capsid,integrase,terminase

attL 3212688:3212704|attR 3256966:3256982

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000526135.1\|3155067_3155526_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	2.9e-13	32.3
WP_000056421.1\|3155714_3156833_-	anion transporter	NA	NA	NA	NA
WP_000091016.1\|3156829_3157297_-	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA
WP_001001761.1\|3157482_3157611_+	manganase accumulation protein MntS	NA	NA	NA	NA
WP_001054648.1\|3157882_3159466_+	phosphoethanolamine transferase	NA	NA	NA	NA
WP_001295296.1\|3159514_3160030_-	outer membrane protein OmpX	H6WZM8	Escherichia_phage	1.1e-16	33.8
WP_120795379.1\|3160082_3160148_-	protein YliM	NA	NA	NA	NA
WP_001295297.1\|3160382_3161270_+	threonine/homoserine exporter RhtA	NA	NA	NA	NA
WP_000100800.1\|3161569_3162073_+	DNA starvation/stationary phase protection protein Dps	A0A222YYG6	Streptomyces_phage	4.9e-06	29.0
WP_000843866.1\|3162476_3163223_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA
WP_001159065.1\|3163361_3164021_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA
WP_000569080.1\|3164017_3164740_+	glutamine ABC transporter ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	2.5e-35	41.8
WP_001267233.1\|3164856_3167082_+	mechanosensitive channel protein	NA	NA	NA	NA
WP_001275941.1\|3167078_3168005_-	23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA	NA	NA	NA
WP_000710618.1\|3168280_3168541_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_000990165.1\|3171300_3171978_+	PKHD-type hydroxylase YbiX	Q5GQB0	Synechococcus_phage	4.0e-19	30.1
WP_000146357.1\|3172051_3172318_+	C4-type zinc finger protein YbiI	E5G6L7	Salmonella_phage	3.1e-07	45.6
WP_000849301.1\|3172582_3172843_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_000253497.1\|3173071_3174157_-	hydroxycarboxylate dehydrogenase HcXB	NA	NA	NA	NA
WP_000386550.1\|3174297_3175260_-	DNA-binding protein YbiB	NA	NA	NA	NA
WP_001218650.1\|3175287_3177438_-	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	6.3e-42	25.8
WP_000007122.1\|3177974_3179336_-	ATP-dependent RNA helicase RhlE	A0A1V0SBR7	Catovirus	1.5e-52	31.8
WP_001295890.1\|3179564_3180236_+	DNA-binding transcriptional regulator CecR	NA	NA	NA	NA
WP_000743444.1\|3180238_3181234_+	secretion protein HlyD	NA	NA	NA	NA
WP_001317737.1\|3181226_3182963_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.3e-18	29.8
WP_000070131.1\|3182955_3184089_+	ABC transporter permease	NA	NA	NA	NA
WP_000469031.1\|3184099_3185206_+	ABC transporter permease	NA	NA	NA	NA
WP_000871982.1\|3185167_3185578_-	YbhQ family protein	NA	NA	NA	NA
WP_001113346.1\|3185710_3186472_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000650341.1\|3186468_3187710_+	cardiolipin synthase ClsB	NA	NA	NA	NA
WP_000045467.1\|3187709_3188666_+	UPF0104 family protein	NA	NA	NA	NA
WP_000446942.1\|3188701_3189091_-	hypothetical protein	NA	NA	NA	NA
WP_000373624.1\|3189296_3190001_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_000852287.1\|3190137_3190590_-	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_000611260.1\|3190591_3190837_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_000080885.1\|3190829_3191315_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_000084639.1\|3191317_3191830_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA
WP_039004040.1\|3191851_3192841_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_001304790.1\|3193237_3194146_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	8.3e-28	31.1
WP_000042533.1\|3194337_3196359_-	excinuclease ABC subunit B	NA	NA	NA	NA
WP_000044831.1\|3196937_3197615_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_000246796.1\|3197607_3198363_-	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_000638122.1\|3198349_3199504_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_000951218.1\|3199500_3200541_-	biotin synthase BioB	NA	NA	NA	NA
WP_001696826.1\|3200627_3201917_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	1.0e-18	29.3
WP_000767411.1\|3201975_3202452_+	kinase inhibitor	NA	NA	NA	NA
WP_000246058.1\|3203554_3204298_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_001317842.1\|3206020_3206602_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.7e-101	93.2
WP_001695589.1\|3210068_3210668_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	4.1e-108	97.5
WP_073507010.1\|3210738_3214236_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	98.0
3212688:3212704	attL	NA	NA	NA	NA
WP_050541368.1\|3214296_3214899_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.7e-88	85.1
WP_001695586.1\|3214835_3215579_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	8.6e-148	96.8
WP_001152632.1\|3215584_3216283_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	9.5e-133	99.1
WP_000847345.1\|3216282_3216612_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_001695584.1\|3216608_3219170_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	89.4
WP_000459480.1\|3219162_3219597_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	2.0e-64	99.2
WP_001695582.1\|3219578_3220001_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.6e-69	95.0
WP_021539112.1\|3220016_3220757_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	8.9e-129	96.7
WP_001695579.1\|3220764_3221160_-	MFS transporter	A0A0K2FIF4	Enterobacteria_phage	5.0e-70	98.5
WP_001695577.1\|3221156_3221735_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-79	97.4
WP_000752994.1\|3221746_3222100_-\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_001695575.1\|3222111_3222507_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	8.2e-57	93.9
WP_001695574.1\|3222548_3223574_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.3e-190	98.2
WP_001338090.1\|3223629_3223962_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.5e-55	99.1
WP_033556695.1\|3223971_3225291_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.4e-233	98.9
WP_039004547.1\|3225271_3226873_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.7e-308	98.5
WP_000198149.1\|3226869_3227076_-	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_039004545.1\|3227072_3228998_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.2
WP_000453587.1\|3228972_3229518_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001415975.1\|3229906_3230101_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	4.3e-27	96.9
WP_000738421.1\|3230462_3230756_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001228695.1\|3230846_3231029_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001135252.1\|3231245_3231743_-	lysozyme RrrD	A0A1B5FP97	Escherichia_phage	7.9e-89	95.8
WP_000839597.1\|3231742_3231958_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	2.6e-33	100.0
WP_000737280.1\|3232530_3233628_+	porin OmpC	Q1MVN1	Enterobacteria_phage	6.7e-157	77.1
WP_001204791.1\|3233817_3234201_-	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.4e-55	83.3
WP_000971055.1\|3234286_3234427_-	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
WP_001099702.1\|3234423_3234786_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	3.6e-59	94.8
WP_000386641.1\|3234992_3235334_-	DUF2591 family protein	Q76H72	Enterobacteria_phage	6.2e-61	95.6
WP_001254223.1\|3235336_3235513_-	NinE family protein	K7PHE6	Enterobacteria_phage	1.4e-27	98.3
WP_000153280.1\|3235509_3236037_-	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	9.5e-101	100.0
WP_000736903.1\|3236033_3236474_-	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.0e-81	100.0
WP_000145926.1\|3236547_3236838_-	protein ren	O48423	Enterobacteria_phage	9.6e-47	100.0
WP_000788877.1\|3236834_3237536_-	Replication protein 14	K7P6G2	Enterobacteria_phage	9.9e-130	100.0
WP_000185516.1\|3237532_3238432_-	replication protein	A0A0K2FJ31	Enterobacteria_phage	1.1e-173	99.7
WP_000251069.1\|3238464_3238758_-	lambda phage CII family protein	A2SY75	Escherichia_phage	3.7e-46	100.0
WP_000437875.1\|3238876_3239077_-	hypothetical protein	A4KWT7	Enterobacteria_phage	4.3e-30	100.0
WP_001274756.1\|3239177_3239891_+	LexA family transcriptional regulator	A4KWV9	Enterobacteria_phage	3.5e-130	99.2
WP_000708836.1\|3240018_3240876_+	NYN domain-containing protein	A4JWQ6	Burkholderia_virus	5.8e-39	39.7
WP_001317717.1\|3241357_3241681_+	antitermination protein	K7P718	Enterobacteria_phage	1.0e-52	100.0
WP_001278766.1\|3241673_3242168_-	hypothetical protein	K7P861	Enterobacteria_phage	1.4e-85	99.4
WP_000065373.1\|3242424_3242793_+	DUF2528 family protein	M1FPD2	Enterobacteria_phage	7.6e-65	99.2
WP_001198858.1\|3242865_3243006_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	3.3e-21	100.0
WP_000358700.1\|3242998_3243142_+	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	1.8e-17	95.7
WP_000995439.1\|3243216_3243513_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	1.6e-49	100.0
WP_001317715.1\|3243518_3244304_+	phage recombination protein Bet	A0A0N7KZJ3	Stx2-converting_phage	4.1e-148	99.2
WP_000186851.1\|3244300_3244981_+	YqaJ viral recombinase family protein	Q6H9Z0	Enterobacteria_phage	1.2e-132	100.0
WP_000149532.1\|3244977_3245160_+	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	2.8e-28	96.7
WP_000548531.1\|3245132_3245324_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	7.3e-27	100.0
WP_077897612.1\|3245334_3245616_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	7.2e-47	98.9
WP_000763363.1\|3245714_3245936_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	6.4e-35	98.6
WP_001289879.1\|3245932_3246481_+	ead/Ea22-like family protein	K7PKY4	Enterobacterial_phage	7.7e-45	58.2
WP_000789830.1\|3246611_3247310_+	DUF1311 domain-containing protein	J9Q6K3	Salmonella_phage	1.6e-100	81.0
WP_000545745.1\|3247546_3247714_+	hypothetical protein	A5VWB7	Enterobacteria_phage	2.9e-27	98.2
WP_001303849.1\|3247753_3247972_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_000533645.1\|3247949_3249020_+\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	1.5e-201	99.7
3256966:3256982	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3694091 : 3794826

Escherichia_phage(29.82%)

transposase,portal,tail,lysis,holin,protease,integrase,terminase

attL 3745229:3745276|attR 3790922:3790969

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000131040.1\|3694091_3696125_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	3.4e-21	27.4
WP_001314510.1\|3696253_3696841_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_073507021.1\|3696854_3698327_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_001159121.1\|3698340_3700029_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	6.2e-61	31.1
WP_001362381.1\|3701191_3701755_+	tyrosine-type DNA invertase FimX	A0A2L1IV36	Escherichia_phage	1.8e-52	52.7
WP_001317642.1\|3701813_3702608_+	LuxR family transcriptional regulator HyxR	NA	NA	NA	NA
WP_001695470.1\|3702761_3703523_+	protein HyxA	NA	NA	NA	NA
WP_088435459.1\|3704662_3705856_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_000003133.1\|3706037_3706706_+	hypothetical protein	NA	NA	NA	NA
WP_000370406.1\|3706946_3707642_-	lactate utilization protein C	NA	NA	NA	NA
WP_073507022.1\|3707634_3709062_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_001102115.1\|3709072_3709792_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_000339603.1\|3710319_3711174_-	DNA-binding transcriptional regulator RclR	NA	NA	NA	NA
WP_001046289.1\|3711399_3712725_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	8.5e-114	47.8
WP_000474088.1\|3712833_3713070_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001298546.1\|3713081_3713675_+	reactive chlorine species resistance protein RclC	NA	NA	NA	NA
WP_001299025.1\|3713834_3714704_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	9.3e-53	41.7
WP_000621016.1\|3714952_3715810_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_073507023.1\|3715934_3720182_-	intimin-like adhesin FdeC	NA	NA	NA	NA
WP_001174468.1\|3720747_3721599_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	8.8e-48	41.1
WP_001172276.1\|3721625_3722615_+	aldo/keto reductase	NA	NA	NA	NA
WP_000910706.1\|3722645_3723539_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001317639.1\|3723898_3724141_+	NADH-flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_000662258.1\|3724621_3724723_+	hypothetical protein	NA	NA	NA	NA
WP_000803998.1\|3725086_3725350_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_000866436.1\|3725349_3725490_+	50S ribosomal protein L36	NA	NA	NA	NA
WP_000389022.1\|3726573_3727116_+	ECP biosynthesis operon DNA-binding transcriptional regulator EcpR	NA	NA	NA	NA
WP_000730984.1\|3727190_3727778_+	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA
WP_000716404.1\|3727834_3728503_+	fimbrial chaperone EcpB	NA	NA	NA	NA
WP_073507024.1\|3728528_3731054_+	fimbrial usher EcpC	NA	NA	NA	NA
WP_001265664.1\|3731043_3732687_+	fimbrial adhesin EcpD	NA	NA	NA	NA
WP_021525526.1\|3732655_3733366_+	fimbrial chaperone EcpE	NA	NA	NA	NA
WP_032148604.1\|3733679_3734009_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001019923.1\|3734257_3734872_-	YagU family protein	NA	NA	NA	NA
WP_000146236.1\|3735086_3735272_-	hypothetical protein	NA	NA	NA	NA
WP_000080195.1\|3739740_3741354_-\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.0e-182	63.6
WP_000624722.1\|3741384_3741735_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
WP_000422741.1\|3741731_3742157_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
WP_001059463.1\|3743808_3744303_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000772639.1\|3744737_3745076_-	DUF4102 domain-containing protein	E5AGD0	Erwinia_phage	5.6e-22	48.6
3745229:3745276	attL	NA	NA	NA	NA
WP_059343318.1\|3745765_3746509_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_085947598.1\|3747186_3748349_-\|transposase	IS3-like element IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	4.0e-51	40.6
WP_000011690.1\|3749469_3750108_-	hypothetical protein	NA	NA	NA	NA
WP_059342854.1\|3750104_3752093_-	ATP-binding domain-containing protein	NA	NA	NA	NA
WP_073507026.1\|3752646_3753231_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	4.6e-104	94.8
WP_073507027.1\|3756826_3757426_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	6.1e-104	93.5
WP_073507028.1\|3757493_3760973_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.6
WP_126123293.1\|3761033_3761642_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	6.4e-101	94.1
WP_073507030.1\|3761578_3762322_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	1.5e-147	97.6
WP_001152385.1\|3762327_3763026_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	6.0e-135	100.0
WP_000447248.1\|3763035_3763365_-\|tail	phage tail protein	A0A291AWW9	Escherichia_phage	1.7e-60	100.0
WP_073507031.1\|3763364_3766430_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	99.2
WP_001161009.1\|3766401_3766731_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_001297778.1\|3766739_3767126_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	3.6e-65	99.2
WP_000211099.1\|3767186_3767930_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.0e-132	99.6
WP_001079398.1\|3767941_3768343_-\|tail	tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
WP_000677108.1\|3768339_3768918_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-102	99.5
WP_001283153.1\|3768929_3769205_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_001097050.1\|3769197_3769521_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_077897614.1\|3769607_3771635_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	0.0e+00	99.5
WP_073507033.1\|3771579_3773088_-\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	1.9e-287	98.8
WP_001072975.1\|3773087_3773300_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_073507034.1\|3773296_3775399_-\|terminase	phage terminase large subunit family protein	K7PH40	Enterobacteria_phage	0.0e+00	99.7
WP_000373425.1\|3775398_3775893_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	9.9e-84	100.0
WP_032259466.1\|3776568_3776721_-	hypothetical protein	K7PKL2	Enterobacteria_phage	3.6e-21	98.0
WP_048266675.1\|3776708_3777170_-\|lysis	lysis protein	K7P6Y5	Enterobacteria_phage	4.4e-70	90.8
WP_001075798.1\|3777166_3777781_-	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	1.4e-111	99.0
WP_000422366.1\|3777780_3778062_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
WP_001283169.1\|3778048_3778435_-\|holin	phage holin family protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
WP_000220228.1\|3778525_3779122_-	hypothetical protein	NA	NA	NA	NA
WP_000609696.1\|3779228_3779807_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.6e-45	53.9
WP_001433852.1\|3779821_3780811_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.9e-195	99.7
WP_073507035.1\|3780818_3781616_-	KilA-N domain-containing protein	A0A0P0ZCS0	Stx2-converting_phage	4.4e-150	99.6
WP_000767113.1\|3781635_3782025_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_000210170.1\|3782021_3782348_-	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	5.4e-54	100.0
WP_001758754.1\|3782347_3782842_-	PerC family transcriptional regulator	U5P0U0	Shigella_phage	1.2e-84	95.7
WP_000061506.1\|3782838_3783657_-	helix-turn-helix domain-containing protein	A5LH71	Enterobacteria_phage	2.7e-126	89.5
WP_000933942.1\|3783653_3783890_-	hypothetical protein	A0A291AX25	Escherichia_phage	1.6e-39	100.0
WP_059309219.1\|3783882_3784719_-	ash family protein	Q8SBF3	Shigella_phage	3.7e-139	92.4
WP_000521508.1\|3784715_3785267_-	hypothetical protein	A0A291AWW8	Escherichia_phage	4.5e-101	100.0
WP_000649477.1\|3785310_3785511_-	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	7.9e-32	100.0
WP_000848749.1\|3785601_3786276_+	LexA family transcriptional regulator	U5P0T5	Shigella_phage	6.0e-132	99.6
WP_000135680.1\|3786944_3787307_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_000081270.1\|3787372_3788197_+	DUF2303 family protein	U5P439	Shigella_phage	1.7e-149	99.6
WP_001506964.1\|3788324_3788861_+	5'-deoxynucleotidase	S5MW55	Escherichia_phage	1.4e-99	98.9
WP_073507037.1\|3788851_3789214_+	hypothetical protein	U5P092	Shigella_phage	5.2e-66	98.3
WP_000206735.1\|3789213_3789519_+	hypothetical protein	U5P0J0	Shigella_phage	1.5e-50	99.0
WP_000051887.1\|3789745_3790909_+\|integrase	site-specific integrase	U5P434	Shigella_phage	2.4e-229	100.0
WP_000893310.1\|3791113_3792367_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.7e-95	47.0
3790922:3790969	attR	NA	NA	NA	NA
WP_001285288.1\|3792378_3793482_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000749899.1\|3793770_3794826_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	3.5e-118	60.6

DBSCAN-SWA_8

4573278 : 4628197

Enterobacteria_phage(33.33%)

transposase,portal,tail,head,lysis,holin,plate,protease,capsid,integrase,terminase

attL 4589213:4589259|attR 4625409:4625455

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000208242.1\|4573278_4573809_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_001293344.1\|4573818_4575150_+	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
WP_000139496.1\|4575216_4576143_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_000872909.1\|4576235_4576721_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_001296623.1\|4576805_4577051_-	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000084268.1\|4577476_4578322_+	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
WP_000136788.1\|4578344_4579853_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_001250644.1\|4580023_4581034_+	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000796345.1\|4581130_4581877_+	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_000323555.1\|4581881_4582310_-	universal stress protein UspD	NA	NA	NA	NA
WP_000655986.1\|4582336_4582636_-	DUF406 domain-containing protein	NA	NA	NA	NA
WP_000155257.1\|4582847_4583288_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000802221.1\|4583388_4583988_+	YiiQ family protein	NA	NA	NA	NA
WP_001216325.1\|4584095_4584863_+	triose-phosphate isomerase	NA	NA	NA	NA
WP_000708998.1\|4584917_4585673_-	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_001045701.1\|4585779_4586769_-	sulfate/thiosulfate ABC transporter substrate-binding protein Sbp	NA	NA	NA	NA
WP_001318165.1\|4587088_4588051_-	6-phosphofructokinase	NA	NA	NA	NA
WP_001076742.1\|4588231_4589134_-	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
4589213:4589259	attL	NA	NA	NA	NA
WP_000468308.1\|4589370_4589589_-	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_073507052.1\|4589670_4590834_-	phage late control D family protein	U5N3V4	Enterobacteria_phage	3.8e-203	98.4
WP_000978888.1\|4590833_4591313_-\|tail	phage tail protein	O64315	Escherichia_phage	7.3e-84	98.7
WP_073507053.1\|4591327_4593775_-\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	0.0e+00	97.8
WP_000785970.1\|4593767_4593887_-\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001031303.1\|4593919_4594195_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_001251408.1\|4594251_4594770_-\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001286680.1\|4594782_4595973_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.4e-224	99.5
WP_073507054.1\|4596292_4597192_-	hypothetical protein	Q7Y4D2	Escherichia_virus	3.1e-168	99.7
WP_000972099.1\|4597407_4597935_-\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	5.1e-86	88.6
WP_000104681.1\|4597936_4599958_-\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	3.5e-260	64.5
WP_001285325.1\|4599968_4600499_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	2.3e-102	100.0
WP_001121500.1\|4600491_4601400_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	6.3e-161	99.0
WP_000127163.1\|4601404_4601752_-	GPW/gp25 family protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
WP_001093714.1\|4601748_4602384_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	2.6e-113	98.6
WP_073507055.1\|4602467_4603253_+	hypothetical protein	NA	NA	NA	NA
WP_042002651.1\|4603324_4603777_-	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	1.7e-74	97.3
WP_021517192.1\|4603769_4604237_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	7.4e-81	97.4
WP_001300730.1\|4604199_4604373_-	hypothetical protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
WP_001695628.1\|4604344_4604770_-\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	1.0e-65	97.2
WP_073507056.1\|4604757_4605183_-	protein lysA	Q858W1	Yersinia_virus	7.2e-59	88.7
WP_001144101.1\|4605197_4605695_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_000123123.1\|4605694_4605976_-\|holin	phage holin family protein	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_001298859.1\|4606179_4607721_+\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001016257.1\|4607735_4608482_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
WP_073507057.1\|4608535_4608769_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.6e-31	100.0
WP_000988633.1\|4608768_4609278_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_073507058.1\|4609377_4610121_-\|terminase	terminase endonuclease subunit	Q94MJ2	Enterobacteria_phage	2.1e-125	96.4
WP_001248569.1\|4610124_4611198_-\|capsid	phage major capsid protein, P2 family	Q94MH9	Enterobacteria_phage	3.9e-202	99.7
WP_001297840.1\|4611256_4612111_-\|capsid	GPO family capsid scaffolding protein	Q778Z1	Enterobacteria_phage	2.4e-133	97.9
WP_073507059.1\|4612284_4614057_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
WP_000038165.1\|4614056_4615091_+\|portal	phage portal protein	M1SV64	Escherichia_phage	4.2e-201	99.7
WP_061348396.1\|4615478_4616483_+	DNA adenine methylase	M4SLI5	Cyanophage	1.3e-05	23.4
WP_061348395.1\|4616485_4617505_-	hypothetical protein	NA	NA	NA	NA
WP_061348401.1\|4617508_4618624_-	ParB/RepB/Spo0J family partition protein	Q858T2	Yersinia_virus	1.5e-18	26.5
WP_061348400.1\|4619041_4619494_-	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	6.5e-82	98.0
WP_073507060.1\|4619493_4621779_-	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	97.4
WP_000027667.1\|4621768_4622044_-	DUF5405 family protein	Q858T5	Yersinia_virus	3.8e-45	100.0
WP_001534949.1\|4622040_4622265_-	TraR/DksA C4-type zinc finger protein	S4TRY6	Salmonella_phage	8.5e-35	98.6
WP_073507061.1\|4622264_4622567_-	DUF5405 family protein	Q7Y4C1	Escherichia_virus	8.5e-46	98.0
WP_000557703.1\|4622566_4622791_-	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_000217671.1\|4622854_4623355_-	hypothetical protein	S4TTB7	Salmonella_phage	1.7e-91	99.4
WP_024210514.1\|4623351_4623549_-	hypothetical protein	S4TNZ7	Salmonella_phage	1.8e-28	96.9
WP_000453534.1\|4623524_4623797_-	hypothetical protein	Q1JS44	Enterobacteria_phage	1.5e-46	100.0
WP_001192857.1\|4623949_4624243_+	helix-turn-helix domain-containing protein	Q1JS45	Enterobacteria_phage	1.0e-48	100.0
WP_000023386.1\|4624312_4625293_+\|integrase	tyrosine-type recombinase/integrase	U5N0A8	Enterobacteria_phage	2.3e-185	99.7
WP_001223800.1\|4625478_4625979_-	cell-envelope stress modulator CpxP	NA	NA	NA	NA
4625409:4625455	attR	NA	NA	NA	NA
WP_001033720.1\|4626128_4626827_+	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_000580417.1\|4626823_4628197_+	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	3.8e-16	25.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010158

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010157

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection