CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP010174	Escherichia coli strain H8 plasmid B, complete sequence	0 crisprs	NA	0	1
NZ_CP010173	Escherichia coli strain H8 plasmid A, complete sequence	0 crisprs	NA	0	2
NZ_CP010175	Escherichia coli strain H8 plasmid C, complete sequence	0 crisprs	NA	0	0
NZ_CP010172	Escherichia coli strain H8 chromosome, complete genome	4 crisprs	c2c9_V-U4,DEDDh,cas3,csa3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,RT,DinG	16	6

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3284 : 43867

Escherichia_phage(36.84%)

integrase,transposase

attL 15809:15826|attR 30907:30924

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001389365.1\|3284_4049_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000130000.1\|4275_4581_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000184001.1\|4591_5797_-	chromate efflux transporter	NA	NA	NA	NA
WP_000376616.1\|5952_6156_-	hypothetical protein	NA	NA	NA	NA
WP_000259031.1\|6283_7123_-	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000679427.1\|7116_7464_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000503573.1\|7669_8458_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA5	NA	NA	NA	NA
WP_001389366.1\|8588_9062_-	trimethoprim-resistant dihydrofolate reductase DfrA17	A0A1B2IAU3	Erwinia_phage	1.3e-16	34.6
WP_000845048.1\|9219_10233_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|10435_10786_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001323888.1\|10805_10973_-	hypothetical protein	A0A1B0V7I9	Salmonella_phage	2.3e-24	98.2
WP_001161490.1\|10961_11522_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_001138014.1\|11525_14492_+\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_001039464.1\|15338_15725_+	hypothetical protein	NA	NA	NA	NA
15809:15826	attL	NA	NA	NA	NA
WP_030005799.1\|15864_16833_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	5.5e-179	95.7
WP_072196731.1\|18951_19077_-	hypothetical protein	NA	NA	NA	NA
WP_000776034.1\|20962_21394_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
WP_001754953.1\|21393_22665_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	5.4e-150	63.7
WP_000064119.1\|22746_23721_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	5.0e-87	54.1
WP_000368714.1\|23720_24926_-	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
WP_000339857.1\|25340_25610_+	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|25786_26653_-	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_032409716.1\|27182_27287_+	hypothetical protein	NA	NA	NA	NA
WP_000764642.1\|27415_27673_+	hypothetical protein	NA	NA	NA	NA
WP_000015958.1\|27730_28507_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
WP_000129823.1\|28503_29247_-	hypothetical protein	NA	NA	NA	NA
WP_000493378.1\|29297_29648_-	hypothetical protein	NA	NA	NA	NA
WP_001261276.1\|30221_30452_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_000754566.1\|30448_30865_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_000227969.1\|32206_33283_+\|transposase	IS110 family transposase	NA	NA	NA	NA
30907:30924	attR	NA	NA	NA	NA
WP_000557452.1\|33565_34426_+	aminoglycoside N-acetyltransferase AAC(3)-IIa	NA	NA	NA	NA
WP_002063889.1\|34438_34981_+	AAA family ATPase	NA	NA	NA	NA
WP_001067855.1\|36174_36879_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_013362817.1\|37415_37865_-	hypothetical protein	NA	NA	NA	NA
WP_013362818.1\|38494_39232_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	E4ZFQ0	Streptococcus_phage	6.3e-135	99.6
WP_013362819.1\|39357_39453_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA
WP_001067855.1\|39587_40292_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_013023839.1\|41343_41820_+	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
WP_000239590.1\|41866_42742_-	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_001067855.1\|43162_43867_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP010173

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 11460

Salmonella_phage(30.77%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001376650.1\|532_1210_+	DUF2829 domain-containing protein	A0A1B0VBT1	Salmonella_phage	1.2e-127	99.6
WP_073529421.1\|1216_2005_+	hypothetical protein	Q71TF1	Escherichia_phage	4.8e-141	95.4
WP_001376906.1\|2034_2352_-	hypothetical protein	Q1MVN0	Enterobacteria_phage	7.6e-45	88.6
WP_073529422.1\|2341_5329_-	hypothetical protein	A0A1B0VFX4	Salmonella_phage	0.0e+00	99.4
WP_072649192.1\|5341_5707_-	ddrA	A0A1B0V846	Salmonella_phage	6.4e-48	100.0
WP_073529423.1\|5703_7623_-	hypothetical protein	A0A1B0V7H1	Salmonella_phage	0.0e+00	96.7
WP_001339178.1\|7624_8227_-	hypothetical protein	Q1MVM6	Enterobacteria_phage	4.6e-99	99.5
WP_000580770.1\|8213_8657_-	hypothetical protein	A0A077SK09	Escherichia_phage	2.9e-82	99.3
WP_000887652.1\|8653_8983_-\|holin	holin	Q37876	Escherichia_phage	1.3e-52	100.0
WP_000145199.1\|9057_9321_-	hypothetical protein	Q71TD9	Escherichia_phage	1.1e-22	67.1
WP_046598022.1\|9756_10329_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	3.0e-84	86.1
WP_073529424.1\|10356_10833_+	hypothetical protein	K7P7B1	Enterobacteria_phage	2.4e-10	35.5
WP_001619155.1\|10835_11069_+	hypothetical protein	NA	NA	NA	NA
WP_073529425.1\|11049_11460_-\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.2e-21	45.7

DBSCAN-SWA_2

15607 : 94072

Escherichia_phage(65.12%)

terminase,integrase,head

attL 39815:39831|attR 90848:90864

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_029487597.1\|15607_16042_-	hypothetical protein	Q71TD4	Escherichia_phage	3.7e-74	98.6
WP_001561131.1\|16120_16957_-	hypothetical protein	A0A077SLH5	Escherichia_phage	1.5e-153	99.6
WP_029487598.1\|16956_18390_-	bleomycin hydrolase	Q71TP2	Escherichia_phage	3.4e-270	99.4
WP_000002800.1\|18386_18743_-	hypothetical protein	Q71TP1	Escherichia_phage	1.0e-61	100.0
WP_114142441.1\|18742_22564_-	transglycosylase SLT domain-containing protein	A0A077SK38	Escherichia_phage	0.0e+00	85.5
WP_000926345.1\|22645_23527_-	hypothetical protein	A0A1B0VBL3	Salmonella_phage	3.7e-174	99.7
WP_000506612.1\|23541_24153_-	hypothetical protein	Q71TN8	Escherichia_phage	8.4e-109	99.0
WP_023155386.1\|24163_24730_-	hypothetical protein	A0A077SK12	Escherichia_phage	1.5e-99	98.9
WP_000765490.1\|24939_25719_-	hypothetical protein	Q71TC6	Escherichia_phage	3.6e-149	99.6
WP_000908460.1\|25726_26044_-	hypothetical protein	Q71TC5	Escherichia_phage	2.9e-28	100.0
WP_000245712.1\|26622_26844_+	host cell division inhibitor Icd-like protein	A0A077SLM6	Escherichia_phage	1.3e-38	100.0
WP_073529426.1\|26840_27884_+	phage antirepressor Ant	Q71TN2	Escherichia_phage	5.2e-175	94.5
WP_001187875.1\|28048_28849_+	protein kilA	Q1MVK4	Enterobacteria_phage	1.9e-148	100.0
WP_001667233.1\|28878_29724_+	hypothetical protein	Q1MVK3	Enterobacteria_phage	1.1e-151	98.9
WP_001369095.1\|29774_30020_+	hypothetical protein	A0A1B0VDM5	Salmonella_phage	3.5e-13	45.0
WP_032186079.1\|30201_30357_+	type I toxin-antitoxin system toxin HokD	A0A1I9LJU7	Stx_converting_phage	5.2e-15	90.2
WP_000509938.1\|30473_30983_-	hypothetical protein	Q1MVJ9	Enterobacteria_phage	3.0e-91	99.4
WP_001345489.1\|30994_31225_-	hypothetical protein	Q1MVJ8	Enterobacteria_phage	3.0e-35	98.7
WP_000041756.1\|31611_32427_-	hypothetical protein	A0A1B0V835	Salmonella_phage	1.2e-113	99.6
WP_073529427.1\|32436_34026_-	hypothetical protein	A0A077SLN8	Escherichia_phage	1.1e-304	99.4
WP_000067708.1\|34086_35793_-	hypothetical protein	Q71TM1	Escherichia_phage	0.0e+00	99.8
WP_000725191.1\|36059_37025_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.7e-167	99.4
WP_000817632.1\|37021_38227_-	ParA family protein	Q1MVJ3	Enterobacteria_phage	2.0e-226	100.0
WP_001076427.1\|38626_39487_-	RepB family plasmid replication initiator protein	Q71TL8	Escherichia_phage	4.7e-158	100.0
WP_001281115.1\|39804_40197_-	hypothetical protein	A0A077SLJ1	Escherichia_phage	7.6e-71	97.7
39815:39831	attL	NA	NA	NA	NA
WP_032332854.1\|40374_40797_-	hypothetical protein	Q71TL5	Escherichia_phage	3.6e-58	90.0
WP_032332855.1\|40836_41625_-	hypothetical protein	A0A1B0V830	Salmonella_phage	3.7e-117	96.9
WP_001177860.1\|42087_42372_+	hypothetical protein	Q71TA2	Escherichia_phage	3.5e-49	100.0
WP_000472529.1\|42364_43270_+	recombination-associated protein RdgC	A0A077SK17	Escherichia_phage	1.6e-159	99.7
WP_000660969.1\|43266_45531_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A077SL51	Escherichia_phage	0.0e+00	68.2
WP_000467133.1\|47285_47720_+	tellurite resistance TerB family protein	Q1MVI3	Enterobacteria_phage	8.1e-74	100.0
WP_000146942.1\|47719_47884_+	DUF3927 family protein	Q1MVI2	Enterobacteria_phage	6.9e-18	98.1
WP_001276605.1\|48356_49721_+	replicative DNA helicase	O80281	Escherichia_phage	1.8e-252	99.6
WP_001189128.1\|49720_50023_+	hypothetical protein	NA	NA	NA	NA
WP_001023221.1\|50019_50994_+	hypothetical protein	A0A1B0VCH7	Salmonella_phage	4.2e-187	98.1
WP_000535205.1\|51040_51673_-	hypothetical protein	A0A1B0V872	Salmonella_phage	6.9e-90	100.0
WP_000212018.1\|51665_52682_-	hypothetical protein	A0A077SLQ1	Escherichia_phage	3.5e-192	100.0
WP_000602711.1\|52683_53469_-	hypothetical protein	A0A1B0V7N6	Salmonella_phage	2.7e-144	99.6
WP_000896806.1\|53455_54184_-	hypothetical protein	Q71TJ9	Escherichia_phage	4.2e-139	100.0
WP_001141908.1\|54187_55405_-	hypothetical protein	A0A077SL53	Escherichia_phage	1.1e-224	100.0
WP_000235786.1\|55414_55792_-	hypothetical protein	Q38620	Escherichia_phage	2.2e-67	100.0
WP_000840931.1\|55938_56184_+	hypothetical protein	Q71T86	Escherichia_phage	5.7e-40	100.0
WP_000943607.1\|56186_56765_+	norphogenetic protein	Q71T85	Escherichia_phage	5.7e-107	99.5
WP_000096174.1\|56831_56987_+	hypothetical protein	Q71TJ4	Escherichia_phage	7.0e-20	100.0
WP_000484110.1\|57488_58115_+	norphogenetic protein	Q71T82	Escherichia_phage	6.1e-123	100.0
WP_001354545.1\|58111_58789_+	calcineurin phosphoesterase	A0A077SLQ6	Escherichia_phage	7.6e-135	100.0
WP_000684868.1\|58785_59487_+	hypothetical protein	Q71TJ0	Escherichia_phage	2.1e-143	99.6
WP_023153718.1\|59788_61051_+	hypothetical protein	Q71TI8	Escherichia_phage	9.2e-235	99.8
WP_000021768.1\|61123_61630_+	hypothetical protein	A0A1B0VAK0	Salmonella_phage	1.8e-93	99.4
WP_023153717.1\|61824_62553_+	hypothetical protein	Q71T76	Escherichia_phage	1.7e-140	99.1
WP_000158004.1\|62636_62840_+	hypothetical protein	A0A2R2Z313	Escherichia_phage	5.2e-31	95.5
WP_023352820.1\|62832_63072_+	hypothetical protein	S5MQM0	Escherichia_phage	1.3e-36	97.5
WP_023154014.1\|63068_63794_+	ead/Ea22-like family protein	A0A0U2QW67	Escherichia_phage	7.5e-48	49.8
WP_000118152.1\|63790_64090_+	hypothetical protein	Q716F3	Shigella_phage	1.5e-58	100.0
WP_033550033.1\|64091_64649_+	ead/Ea22-like family protein	A0A0N7BYR8	Escherichia_phage	5.1e-36	62.8
WP_000224220.1\|64650_64914_+	hypothetical protein	A0A2P0P958	Salmonella_phage	6.7e-31	73.6
WP_023153863.1\|64924_65812_+	DUF551 domain-containing protein	A0A077SK54	Escherichia_phage	1.8e-80	59.3
WP_000516537.1\|65894_66128_+	hypothetical protein	A0A1B0V7L5	Salmonella_phage	1.6e-36	97.4
WP_063123741.1\|66306_66600_+	hypothetical protein	A0A077SK23	Escherichia_phage	2.7e-44	90.7
WP_000988658.1\|66606_66981_+	hypothetical protein	A0A077SL57	Escherichia_phage	3.2e-66	96.0
WP_000057449.1\|66962_67895_+	hypothetical protein	A0A1B0VDS6	Salmonella_phage	1.4e-179	98.4
WP_001261544.1\|67891_68254_+	hypothetical protein	Q71TI4	Escherichia_phage	2.2e-56	100.0
WP_001377386.1\|68915_69167_+	DNA polymerase III subunit theta	Q71T70	Escherichia_phage	4.6e-37	94.0
WP_000506726.1\|69290_69680_+	DNA repair protein	Q1MVE7	Enterobacteria_phage	1.4e-69	99.2
WP_001190712.1\|69752_69974_+	type II toxin-antitoxin system Phd/YefM family antitoxin	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
WP_001216045.1\|69973_70354_+	type II toxin-antitoxin system death-on-curing family toxin	Q71T66	Escherichia_phage	1.9e-63	100.0
WP_023153731.1\|70358_70538_+	hypothetical protein	Q71TH5	Escherichia_phage	7.8e-23	96.6
WP_000648825.1\|70565_71609_+	DUF968 domain-containing protein	A0A1B0VBU2	Salmonella_phage	3.9e-207	99.4
WP_001369802.1\|71697_72150_+	hypothetical protein	Q71T63	Escherichia_phage	1.1e-78	98.7
WP_073529428.1\|72236_73430_+\|terminase	terminase	Q5QBP3	Enterobacteria_phage	6.7e-203	97.0
WP_000124159.1\|73429_74914_+	hypothetical protein	Q5QBP2	Enterobacteria_phage	4.3e-292	99.8
WP_071527722.1\|75135_75255_+	hypothetical protein	NA	NA	NA	NA
WP_001361625.1\|75273_75495_+	host cell division inhibitor Icd-like protein	Q38557	Escherichia_phage	6.0e-25	81.2
WP_072686753.1\|75491_76604_+	phage antirepressor Ant	A0A077SLR9	Escherichia_phage	4.2e-175	86.0
WP_000611664.1\|76636_77488_-	hypothetical protein	A0A077SLM8	Escherichia_phage	1.2e-158	100.0
WP_000874154.1\|77598_77808_-	hypothetical protein	Q5XLQ8	Enterobacteria_phage	4.8e-32	100.0
WP_000542336.1\|78412_78634_+	hypothetical protein	Q5QBN7	Enterobacteria_phage	4.5e-36	100.0
WP_073529429.1\|78641_79673_+\|integrase	tyrosine-type recombinase/integrase	Q71TG5	Escherichia_phage	7.1e-193	99.1
WP_001224236.1\|79723_80035_+	hypothetical protein	A0A077SK03	Escherichia_phage	2.3e-46	99.0
WP_073529430.1\|80281_80842_+	Ref family protein	A0A077SL37	Escherichia_phage	8.5e-100	99.5
WP_023351534.1\|81030_81672_+	hypothetical protein	A0A077SK30	Escherichia_phage	1.2e-110	96.7
WP_000526244.1\|81774_82902_+	RelA/SpoT domain-containing protein	A0A1B0VBT5	Salmonella_phage	7.6e-156	74.1
WP_000747846.1\|82938_83187_-	hypothetical protein	Q71TG0	Escherichia_phage	1.8e-41	100.0
WP_000224043.1\|83183_83624_-	hypothetical protein	A0A077SLF0	Escherichia_phage	1.7e-79	100.0
WP_073529431.1\|83657_90425_-	N-6 DNA methylase	Q1MVN7	Enterobacteria_phage	0.0e+00	98.7
WP_000774697.1\|90501_92211_+	hypothetical protein	Q1MVN6	Enterobacteria_phage	0.0e+00	99.5
90848:90864	attR	NA	NA	NA	NA
WP_000132937.1\|92203_93223_+\|head	head processing protein	Q71TR6	Escherichia_phage	4.4e-179	96.8
WP_001345478.1\|93514_94072_-	lysozyme	Q71TF3	Escherichia_phage	4.2e-107	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP010172

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP010172_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010172_1

2186028-2186666

Orphan

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCGA	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

The CRISPR arrays of NZ_CP010172_1

>merge|NZ_CP010172|1|2186028-2186666|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGACATTGACTGCCCGTGGCGTCCCCGCGACCTTGAGTTCCCCGCGCCAGCGGGGATAAACCGAGTTTGTCGAACACGGAGCGGAGCATACCCGCGAGTTCCCCGCGCCAGCGGGGATAAACCGTGCACGCCCTGCCGGAATCTCCCCTCGCTCTCGAGTTCCCCGCGCCAGCGGGGATAAACCGAGTAAGCCGGTTGATTATCGCCAGGGATATTAGAGTTCCCCGCGCCAGCGGGGATAAACCGAGCTTTATTGTTTTCAGGGAAAATAACGCGGCGAGTTCCCCGCGCCAGCGGGGATAAACCGCGCCAGTCTGAGGTTTTCCGGTCATACATCGTGAGTTCCCCGCGCCAGCGGGGATAAACCGCGCCAGTCTGAGGTTTTCCGGTCATACATCGTGAGTTCCCCGCGCCAGCGGGGATAAACCGACCGTTGCTACACATATGATCAGGCATGTGCCGAGTTCCCCGCGCCAGCGGGGATAAACCGGACGATGAGACGCCCTGGTGTGCCGCGTTCGTGAGTTCCCCGCGCCAGCGGGGATAAACCGCGTTTAGCTCCGCAATGTTGGATATCACTGATGAGTTCCCCGCACCAGCGGGAATAAACCA

>NZ_CP010172|1|1|2186028-2186301|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCGA	CATTGACTGCCCGTGGCGTCCCCGCGACCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCGA	GTTTGTCGAACACGGAGCGGAGCATACCCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCGT	GCACGCCCTGCCGGAATCTCCCCTCGCTCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCGA	GTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCGA

>NZ_CP010172|1|1|2186028-2186666|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACATTGACTGCCCGTGGCGTCCCCGCGACCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTGTCGAACACGGAGCGGAGCATACCCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCTTTATTGTTTTCAGGGAAAATAACGCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTGCTACACATATGATCAGGCATGTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAGACGCCCTGGTGTGCCGCGTTCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTAGCTCCGCAATGTTGGATATCACTGAT
GAGTTCCCCGCACCAGCGGGAATAAACCA

>NZ_CP010172|1|1|2186028-2186666|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACATTGACTGCCCGTGGCGTCCCCGCGACCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTTTGTCGAACACGGAGCGGAGCATACCCGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TGCACGCCCTGCCGGAATCTCCCCTCGCTCTC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGTAAGCCGGTTGATTATCGCCAGGGATATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGCTTTATTGTTTTCAGGGAAAATAACGCGGC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGCCAGTCTGAGGTTTTCCGGTCATACATCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ACCGTTGCTACACATATGATCAGGCATGTGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GACGATGAGACGCCCTGGTGTGCCGCGTTCGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTAGCTCCGCAATGTTGGATATCACTGAT
GAGTTCCCCGCACCAGCGGGAATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010172.1\|WP_000254738.1\|2179343_2179679_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP010172.1\|WP_000226798.1\|2176783_2179018_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP010172.1\|WP_000036723.1\|2182493_2183792_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP010172.1\|WP_001521165.1\|2194898_2195759_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP010172.1\|WP_020233775.1\|2188808_2190086_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP010172.1\|WP_001071643.1\|2179750_2180542_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP010172.1\|WP_000109536.1\|2197933_2198194_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP010172.1\|WP_000210878.1\|2180769_2182407_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP010172.1\|WP_001130266.1\|2197341_2197917_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP010172.1\|WP_001521167.1\|2194122_2194902_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP010172.1\|WP_020232912.1\|2183851_2184724_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP010172.1\|WP_000581937.1\|2179095_2179344_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP010172.1\|WP_000147654.1\|2192735_2194145_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP010172.1\|WP_021523232.1\|2190404_2191190_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP010172.1\|WP_001521172.1\|2175434_2176736_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP010172.1\|WP_000059301.1\|2191259_2192714_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP010172.1\|WP_000186450.1\|2172621_2175378_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP010172.1\|WP_000039721.1\|2187303_2188782_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP010172.1\|WP_001199973.1\|2185017_2185689_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP010172.1\|WP_100190663.1\|2195858_2197207_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853

Protein	Function_ID	Function_description	E-value
NZ_CP010172.1\|WP_000254738.1\|2179343_2179679_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP010172.1\|WP_000226798.1\|2176783_2179018_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP010172.1\|WP_000036723.1\|2182493_2183792_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP010172.1\|WP_001521165.1\|2194898_2195759_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	8.34461e-89
NZ_CP010172.1\|WP_020233775.1\|2188808_2190086_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.01506e-28
NZ_CP010172.1\|WP_001071643.1\|2179750_2180542_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	9.36315e-160
NZ_CP010172.1\|WP_000109536.1\|2197933_2198194_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
NZ_CP010172.1\|WP_000210878.1\|2180769_2182407_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP010172.1\|WP_001130266.1\|2197341_2197917_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP010172.1\|WP_001521167.1\|2194122_2194902_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	8.81851e-61
NZ_CP010172.1\|WP_020232912.1\|2183851_2184724_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	6.02863e-94
NZ_CP010172.1\|WP_000581937.1\|2179095_2179344_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP010172.1\|WP_000147654.1\|2192735_2194145_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.45668e-51
NZ_CP010172.1\|WP_021523232.1\|2190404_2191190_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.07958e-139
NZ_CP010172.1\|WP_001521172.1\|2175434_2176736_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP010172.1\|WP_000059301.1\|2191259_2192714_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.6361e-82
NZ_CP010172.1\|WP_000186450.1\|2172621_2175378_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP010172.1\|WP_000039721.1\|2187303_2188782_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.76431e-108
NZ_CP010172.1\|WP_001199973.1\|2185017_2185689_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP010172.1\|WP_100190663.1\|2195858_2197207_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.29095e-52

>NZ_CP010172.1|WP_001199973.1|2185017_2185689_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP010172.1|WP_020232912.1|2183851_2184724_-|YgcG-family-protein
MRYFILIFTFVCSFIAAQPTIVPSLQQQVTDLTSSLNSQEKKELTYKLESIFNNTQVQIAVLIVPTTKDETIEKYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPANPSEIESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSDGGGSSGGGGASGRW
>NZ_CP010172.1|WP_000036723.1|2182493_2183792_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP010172.1|WP_000210878.1|2180769_2182407_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP010172.1|WP_001071643.1|2179750_2180542_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVIDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP010172.1|WP_000254738.1|2179343_2179679_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP010172.1|WP_000581937.1|2179095_2179344_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP010172.1|WP_000226798.1|2176783_2179018_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRECVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVMANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP010172.1|WP_001521172.1|2175434_2176736_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKALFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDNPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLDSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAPDSEILETVAGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>NZ_CP010172.1|WP_000186450.1|2172621_2175378_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>NZ_CP010172.1|WP_000039721.1|2187303_2188782_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKLLPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYNAMNKGIFKELTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP010172.1|WP_020233775.1|2188808_2190086_-|MFS-transporter
MQHNSYRRWIALAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP010172.1|WP_021523232.1|2190404_2191190_+|SDR-family-oxidoreductase
MSIESLNALSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILINNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP010172.1|WP_000059301.1|2191259_2192714_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP010172.1|WP_000147654.1|2192735_2194145_+|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGIKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP010172.1|WP_001521167.1|2194122_2194902_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLELIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAVGKAAIIRKTVAAESPAMQCLQLARAEQQRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP010172.1|WP_001521165.1|2194898_2195759_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAATASWQAAQDFSGCTLAHWKIEPQPAVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSIENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHAECQ
>NZ_CP010172.1|WP_100190663.1|2195858_2197207_-|IS3-family-transposase
MKHSFEVKLAAVNHYLAGHAGIISTAKLFQLSHTSLSHWINLFLLHGPRALDCRHKRSYSPEDKLCVVLYALGHSESLPRVAARFNIPSHNTVKNWIKGYRKSGNEAFIRRRKEKSMTRSDDTHENEANMTPEEMKNELRYLRAENAYLKAMQEHLLEKKPPGAGEKTKVIRSLRCGHCQSDLLKAAGLARSTLYYQLSLQKAKDKYADVKQLIASIFHEHRGCYGYRRIHCELQKRGLKFSGKTVRKLMQQLGLKSPVRLKKYRSYRGNMGLAAENILQRQFKAEAPCEKWVTDITEFRAGGQKLYLSPILDLFNGEIVAWETACRPTEELVKRMLNKGLESLAEGEKPLLHSDQGWHYRIKSYQSALADRGLVQSMSRKGNCLDNAVMENFFGHLKEEMYYRRDYRNVEELENAVNEYITYWNQKRIKLSLGGLSPVEYRTEHQKAG
>NZ_CP010172.1|WP_001130266.1|2197341_2197917_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP010172.1|WP_000109536.1|2197933_2198194_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG

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Crispr_ID: NZ_CP010172_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010172_2

2215153-2215788

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAATCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAA	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAA	CRT

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP010172_2

>merge|NZ_CP010172|2|2215153-2215788|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAATCGCCGAATAGACAATGACCGCAAAGTGTCTATCGGTGTTCCCCGCGCCAGCGGGGATAAATCGCTTTCCTACTGAATCCGCGTCGGTTGCCTCTGGTGTTCCCCGCGCCAGCGGGGATAAATCGAGCCAGACACATTGCTTTATCGCGCCACGCTGGTGTTCCCCGCGCCAGCGGGGATAAATCGGCGAGTAAGAGTACTGAGTATTTTAATCTCATGTGTTCCCCGCGCCAGCGGGGATAAATCGGCCATAGACTTTATTAACTTCATTGGGGGTTAGTGTTCCCCGCGCCAGCGGGGATAAATCGCGTATCACAACCGGCCTCAGTACGTATCAGAAGTGTTCCCCGCGCCAGCGGGGATAAATCGAGGGGCAGGGAGTGACGCTGGAGCAGGCGATCGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGGAAACCGTTCGTACTTATCGACCTCAACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAGGGGACGGCTACGGGACGCCGCCTATTGACGTGTTCCCCGCGTCAGCGGGGATAAACCGGACGCACTGGATGCGATGATGGACATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACT

>NZ_CP010172|2|2|2215153-2215730|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAATCG	CCGAATAGACAATGACCGCAAAGTGTCTATCG
GTGTTCCCCGCGCCAGCGGGGATAAATCG	CTTTCCTACTGAATCCGCGTCGGTTGCCTCTG
GTGTTCCCCGCGCCAGCGGGGATAAATCG	AGCCAGACACATTGCTTTATCGCGCCACGCTG
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GCGAGTAAGAGTACTGAGTATTTTAATCTCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GCCATAGACTTTATTAACTTCATTGGGGGTTA
GTGTTCCCCGCGCCAGCGGGGATAAATCG	CGTATCACAACCGGCCTCAGTACGTATCAGAA
GTGTTCCCCGCGCCAGCGGGGATAAATCG	AGGGGCAGGGAGTGACGCTGGAGCAGGCGATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGGAAACCGTTCGTACTTATCGACCTCAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAGGGGACGGCTACGGGACGCCGCCTATTGAC
GTGTTCCCCGCGTCAGCGGGGATAAACCG

>NZ_CP010172|2|2|2215153-2215727|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCCGAATAGACAATGACCGCAAAGTGTCTATCG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCTTTCCTACTGAATCCGCGTCGGTTGCCTCTG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGAGCCAGACACATTGCTTTATCGCGCCACGCTG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGGCGAGTAAGAGTACTGAGTATTTTAATCTCAT
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGGCCATAGACTTTATTAACTTCATTGGGGGTTA
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCGTATCACAACCGGCCTCAGTACGTATCAGAA
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGAGGGGCAGGGAGTGACGCTGGAGCAGGCGATC
GTGTTCCCCGCGCCAGCGGGGATAAA	CCGCAGGGAAACCGTTCGTACTTATCGACCTCAAC
GTGTTCCCCGCGCCAGCGGGGATAAA	CCGAAGGGGACGGCTACGGGACGCCGCCTATTGAC
GTGTTCCCCGCGTCAGCGGGGATAAA

>NZ_CP010172|2|2|2215153-2215788|CRT
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCCGAATAGACAATGACCGCAAAGTGTCTATCG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCTTTCCTACTGAATCCGCGTCGGTTGCCTCTG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGAGCCAGACACATTGCTTTATCGCGCCACGCTG
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGGCGAGTAAGAGTACTGAGTATTTTAATCTCAT
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGGCCATAGACTTTATTAACTTCATTGGGGGTTA
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGCGTATCACAACCGGCCTCAGTACGTATCAGAA
GTGTTCCCCGCGCCAGCGGGGATAAA	TCGAGGGGCAGGGAGTGACGCTGGAGCAGGCGATC
GTGTTCCCCGCGCCAGCGGGGATAAA	CCGCAGGGAAACCGTTCGTACTTATCGACCTCAAC
GTGTTCCCCGCGCCAGCGGGGATAAA	CCGAAGGGGACGGCTACGGGACGCCGCCTATTGAC
GTGTTCCCCGCGTCAGCGGGGATAAA	CCGGACGCACTGGATGCGATGATGGACATCACTTG
GAGTTCCCCGCCCCTGCGGTAGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010172.1\|WP_001246104.1\|2220092_2220416_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP010172.1\|WP_001084115.1\|2209291_2210854_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP010172.1\|WP_001295182.1\|2223155_2223917_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP010172.1\|WP_001173673.1\|2219437_2220043_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP010172.1\|WP_001090361.1\|2218010_2219438_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP010172.1\|WP_001521155.1\|2213195_2213846_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP010172.1\|WP_000517476.1\|2220609_2220921_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP010172.1\|WP_000956458.1\|2204798_2204951_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP010172.1\|WP_000144858.1\|2213842_2214766_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP010172.1\|WP_000372392.1\|2217100_2218009_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP010172.1\|WP_001521158.1\|2206494_2209194_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP010172.1\|WP_000246138.1\|2220939_2221650_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP010172.1\|WP_020234039.1\|2212467_2213214_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP010172.1\|WP_001521157.1\|2211401_2212457_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP010172.1\|WP_000568924.1\|2222125_2223175_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP010172.1\|WP_001521153.1\|2215811_2216849_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP010172.1\|WP_001300563.1\|2205027_2206140_+\|IS4-like-element-IS421-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP010172.1\|WP_001521152.1\|2221649_2222129_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP010172.1\|WP_001521154.1\|2214762_2215056_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP010172.1\|WP_000029331.1\|2210850_2211387_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862

Protein	Function_ID	Function_description	E-value
NZ_CP010172.1\|WP_001246104.1\|2220092_2220416_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP010172.1\|WP_001084115.1\|2209291_2210854_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP010172.1\|WP_001295182.1\|2223155_2223917_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP010172.1\|WP_001173673.1\|2219437_2220043_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP010172.1\|WP_001090361.1\|2218010_2219438_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP010172.1\|WP_001521155.1\|2213195_2213846_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.05036e-90
NZ_CP010172.1\|WP_000517476.1\|2220609_2220921_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP010172.1\|WP_000956458.1\|2204798_2204951_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP010172.1\|WP_000144858.1\|2213842_2214766_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157
NZ_CP010172.1\|WP_000372392.1\|2217100_2218009_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP010172.1\|WP_001521158.1\|2206494_2209194_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP010172.1\|WP_000246138.1\|2220939_2221650_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP010172.1\|WP_020234039.1\|2212467_2213214_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.25317e-47
NZ_CP010172.1\|WP_001521157.1\|2211401_2212457_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.45078e-156
NZ_CP010172.1\|WP_000568924.1\|2222125_2223175_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP010172.1\|WP_001521153.1\|2215811_2216849_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP010172.1\|WP_001300563.1\|2205027_2206140_+\|IS4-like-element-IS421-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	3.16058e-15
NZ_CP010172.1\|WP_001521152.1\|2221649_2222129_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	2.39634e-105
NZ_CP010172.1\|WP_001521154.1\|2214762_2215056_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	9.65861e-64
NZ_CP010172.1\|WP_000029331.1\|2210850_2211387_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.72866e-28

>NZ_CP010172.1|WP_001521154.1|2214762_2215056_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRIAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGVRLVSFLPVDNQ
>NZ_CP010172.1|WP_000144858.1|2213842_2214766_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP010172.1|WP_001521155.1|2213195_2213846_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLLPAQLLHLVGRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP010172.1|WP_020234039.1|2212467_2213214_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDASYRLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP010172.1|WP_001521157.1|2211401_2212457_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECVSFDVMNKQGSMKDVLDFICA
>NZ_CP010172.1|WP_000029331.1|2210850_2211387_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDDLLRQLRRAVKLLNGSVNLISLAEDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP010172.1|WP_001084115.1|2209291_2210854_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRYKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLESEKLREALLSLEHAFQFGPDSPSFMQDFEALTGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLDKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRHIEEGQDADELLSKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQNAKAAREKKQEAAE
>NZ_CP010172.1|WP_001521158.1|2206494_2209194_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKSNCFGLTDYFRQLGFADTEQAAQFFAWLLCWHDTGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWHHYLSEYEELLPSSSLSPRKLKRVMEMWMPITTGHHGRPPDRIDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLVQAQNALTVFPLKAKVAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQCDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDSSQRAGKVLICTQVLESSVDCDMDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIASVVKPYANGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRKDPEMANVILVTDDESCGYSAMEGLTGKVG
>NZ_CP010172.1|WP_001300563.1|2205027_2206140_+|IS4-like-element-IS421-family-transposase
MNYSHDNWSAILAHIGKPEELDTSARNAGALTRRREIRDAATLLRLGLAYGPGGMSLREVTAWAQLHDVATLSDVALLKRLRNAADWFGILAAQTLAVRAAVTGCTSGKRLRLVDGTAISAPGGGSAEWRLHMGYDPHTCQFTDFELTDSRDAERLDRFAQTADEIRIADRGFGSRPECIRSLAFGEADYIVRVHWRGLRWLTAEGMRFDMMGFLRGLDCGKNGETTVMIGNSGNKKAGAPFPARLIAVSLPPEKALISKTRLLSENRRKGRVVQAETLEAAGHVLLLTSLPEDEYSAEQVADCYRLRWQIELAFKRLKSLLHLDALRAKEPELAKAWIFANLLAAFLIDDIIQPSLDFPPRSAGSEKKN
>NZ_CP010172.1|WP_000956458.1|2204798_2204951_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP010172.1|WP_001521153.1|2215811_2216849_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSAKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP010172.1|WP_000372392.1|2217100_2218009_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP010172.1|WP_001090361.1|2218010_2219438_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP010172.1|WP_001173673.1|2219437_2220043_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP010172.1|WP_001246104.1|2220092_2220416_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP010172.1|WP_000517476.1|2220609_2220921_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP010172.1|WP_000246138.1|2220939_2221650_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP010172.1|WP_001521152.1|2221649_2222129_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP010172.1|WP_000568924.1|2222125_2223175_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP010172.1|WP_001295182.1|2223155_2223917_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP010172_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010172_3

3237686-3237830

Orphan

Consensus_repeat	Method
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010172_3

>merge|NZ_CP010172|3|3237686-3237830|CRISPRCasFinder
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAAGGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCGATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAA

>NZ_CP010172|3|3|3237686-3237830|CRISPRCasFinder
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAAAA	GGTGCCAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATAAGTGCTCCG
ATGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTGCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010172.1\|WP_000113933.1\|3243751_3244441_+\|phosphate-response-regulator-transcription-factor-PhoB	unknown	unknown	gnl\|CDD\|182277
NZ_CP010172.1\|WP_000941942.1\|3234786_3235071_+\|pyrimidine/purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|182565
NZ_CP010172.1\|WP_000193393.1\|3233014_3233539_+\|shikimate-kinase-AroL	unknown	unknown	gnl\|CDD\|235153
NZ_CP010172.1\|WP_001266503.1\|3251620_3252691_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP010172.1\|WP_001298537.1\|3235717_3236629_-\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|225521
NZ_CP010172.1\|WP_001276420.1\|3234037_3234715_+\|AroM-family-protein	unknown	unknown	gnl\|CDD\|182491
NZ_CP010172.1\|WP_023150062.1\|3230312_3231428_+\|diguanylate-cyclase-AdrA	unknown	unknown	gnl\|CDD\|182329
NZ_CP010172.1\|WP_001295331.1\|3231444_3232254_-\|pyrroline-5-carboxylate-reductase	unknown	unknown	gnl\|CDD\|237008
NZ_CP010172.1\|WP_000698951.1\|3239216_3242363_-\|exonuclease-subunit-SbcC	unknown	unknown	gnl\|CDD\|182330
NZ_CP010172.1\|WP_001326926.1\|3237906_3239091_-\|MFS-transporter-AraJ	unknown	unknown	gnl\|CDD\|182234
NZ_CP010172.1\|WP_001142439.1\|3233588_3233780_+\|protein-YaiA	unknown	unknown	gnl\|CDD\|182421
NZ_CP010172.1\|WP_000158159.1\|3232373_3232832_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP010172.1\|WP_120795376.1\|3235556_3235640_+\|protein-YkiD	unknown	unknown	unknown
NZ_CP010172.1\|WP_001219309.1\|3236753_3237662_+\|fructokinase	unknown	unknown	gnl\|CDD\|236565
NZ_CP010172.1\|WP_001295329.1\|3247595_3248969_+\|proline-specific-permease-ProY	unknown	unknown	gnl\|CDD\|182566
NZ_CP010172.1\|WP_001310597.1\|3249124_3250942_+\|maltodextrin-glucosidase	unknown	unknown	gnl\|CDD\|236759
NZ_CP010172.1\|WP_000149639.1\|3246200_3247520_+\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	unknown	unknown	gnl\|CDD\|185331
NZ_CP010172.1\|WP_001221319.1\|3242359_3243562_-\|exonuclease-subunit-SbcD	unknown	unknown	gnl\|CDD\|182871
NZ_CP010172.1\|WP_001009885.1\|3250946_3251528_-\|ACP-phosphodiesterase	unknown	unknown	gnl\|CDD\|182207
NZ_CP010172.1\|WP_000893623.1\|3244498_3245794_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	unknown	unknown	gnl\|CDD\|182895

Protein	Function_ID	Function_description	E-value
NZ_CP010172.1\|WP_000113933.1\|3243751_3244441_+\|phosphate-response-regulator-transcription-factor-PhoB	gnl\|CDD\|182277	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB.	5.1688e-159
NZ_CP010172.1\|WP_000941942.1\|3234786_3235071_+\|pyrimidine/purine-nucleoside-phosphorylase	gnl\|CDD\|182565	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase.	5.85948e-64
NZ_CP010172.1\|WP_000193393.1\|3233014_3233539_+\|shikimate-kinase-AroL	gnl\|CDD\|235153	PRK03731, aroL, shikimate kinase AroL.	2.43812e-108
NZ_CP010172.1\|WP_001266503.1\|3251620_3252691_+\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP010172.1\|WP_001298537.1\|3235717_3236629_-\|recombination-associated-protein-RdgC	gnl\|CDD\|225521	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair].	0
NZ_CP010172.1\|WP_001276420.1\|3234037_3234715_+\|AroM-family-protein	gnl\|CDD\|182491	PRK10481, PRK10481, hypothetical protein; Provisional.	2.13662e-120
NZ_CP010172.1\|WP_023150062.1\|3230312_3231428_+\|diguanylate-cyclase-AdrA	gnl\|CDD\|182329	PRK10245, adrA, diguanylate cyclase AdrA; Provisional.	0
NZ_CP010172.1\|WP_001295331.1\|3231444_3232254_-\|pyrroline-5-carboxylate-reductase	gnl\|CDD\|237008	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.	1.87564e-128
NZ_CP010172.1\|WP_000698951.1\|3239216_3242363_-\|exonuclease-subunit-SbcC	gnl\|CDD\|182330	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.	0
NZ_CP010172.1\|WP_001326926.1\|3237906_3239091_-\|MFS-transporter-AraJ	gnl\|CDD\|182234	PRK10091, PRK10091, MFS transport protein AraJ; Provisional.	0
NZ_CP010172.1\|WP_001142439.1\|3233588_3233780_+\|protein-YaiA	gnl\|CDD\|182421	PRK10380, PRK10380, hypothetical protein; Provisional.	5.14477e-31
NZ_CP010172.1\|WP_000158159.1\|3232373_3232832_+\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	2.50663e-80
NZ_CP010172.1\|WP_000893623.1\|3244498_3245794_+\|phosphate-regulon-sensor-histidine-kinase-PhoR	gnl\|CDD\|182895	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR.	0
NZ_CP010172.1\|WP_001219309.1\|3236753_3237662_+\|fructokinase	gnl\|CDD\|236565	PRK09557, PRK09557, fructokinase; Reviewed.	0
NZ_CP010172.1\|WP_001295329.1\|3247595_3248969_+\|proline-specific-permease-ProY	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP010172.1\|WP_001310597.1\|3249124_3250942_+\|maltodextrin-glucosidase	gnl\|CDD\|236759	PRK10785, PRK10785, maltodextrin glucosidase; Provisional.	0
NZ_CP010172.1\|WP_001221319.1\|3242359_3243562_-\|exonuclease-subunit-SbcD	gnl\|CDD\|182871	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional.	0
NZ_CP010172.1\|WP_001009885.1\|3250946_3251528_-\|ACP-phosphodiesterase	gnl\|CDD\|182207	PRK10045, PRK10045, ACP phosphodiesterase.	3.03368e-136
NZ_CP010172.1\|WP_000149639.1\|3246200_3247520_+\|branched-chain-amino-acid-transporter-carrier-protein-BrnQ	gnl\|CDD\|185331	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ.	0

>NZ_CP010172.1|WP_001219309.1|3236753_3237662_+|fructokinase
MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHIGGNGTAGEWGHNPLPWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESDPVAELALRRYELRLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVRKAKHGDSSGVRGAAWLWPQE
>NZ_CP010172.1|WP_001298537.1|3235717_3236629_-|recombination-associated-protein-RdgC
MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMGWVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKTEKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGSLPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEEITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFDADFILMTGELAALIQNLIEGLGGEAQR
>NZ_CP010172.1|WP_120795376.1|3235556_3235640_+|protein-YkiD
MTQRPWSKLQRKTHNIAALKIIARRSE
>NZ_CP010172.1|WP_000941942.1|3234786_3235071_+|pyrimidine/purine-nucleoside-phosphorylase
MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEEMTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL
>NZ_CP010172.1|WP_001276420.1|3234037_3234715_+|AroM-family-protein
MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREEVMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANISSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSLGNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIARLAAELLV
>NZ_CP010172.1|WP_001142439.1|3233588_3233780_+|protein-YaiA
MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEHPTAQEAMDAKKRYEDPDKE
>NZ_CP010172.1|WP_000193393.1|3233014_3233539_+|shikimate-kinase-AroL
MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMTVAEIVEREEWAGFRARETAALEAVTAPSTVIATGGGIILTEFNRHFMQNNGIVVYLCAPVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQVISEIRSALAQTINC
>NZ_CP010172.1|WP_000158159.1|3232373_3232832_+|YaiI/YqxD-family-protein
MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRFIRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATIRERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG
>NZ_CP010172.1|WP_001295331.1|3231444_3232254_-|pyrroline-5-carboxylate-reductase
MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAALHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTLDQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVIAEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLETGEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS
>NZ_CP010172.1|WP_023150062.1|3230312_3231428_+|diguanylate-cyclase-AdrA
MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNLKTDAVLAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITVSFNSAPLEWWLSLPIIVIYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRGSDVIGRFGGDEFAVIMSGTPAESAITTMLRVHEGLNTLRLPNTPQVTLRISVGVAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA
>NZ_CP010172.1|WP_001326926.1|3237906_3239091_-|MFS-transporter-AraJ
MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVLALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKPLG
>NZ_CP010172.1|WP_000698951.1|3239216_3242363_-|exonuclease-subunit-SbcC
MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKTTLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRARNQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQVQSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKAQPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHAAKQSAELQQQQQSLNTWLQEHDRFRQWNNEPAGWRAQFSQQTSDREHLRQWQQQLTHAEQKLNALAAITLTLTADEVATALAQHAEQRPLRQHLVALHGQIVPQQKRLAQLQVAIQNVTQEQTQRNAALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPLCGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGATLRGQLDAITKQLQRDENEAQSLRQDEQALTQQWQAVTASLNITLQPLDDIQPWLDAQDEHERQLRLLSQRHELQGQIAAHNQQIIQYQQQIEQRQQLLLTTLTGYALTLPQEDEEESWLATRQQEAQSWQQRQNELTALQNRIQQLTPILETLPQSDELPHCEETVVLENWRQVHEQCLALHSQQQTLQQQDVLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQTLVTQTAETLAQHQQHRPDDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDADNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQLTRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVKKINGLGYSKLESTFAVK
>NZ_CP010172.1|WP_001221319.1|3242359_3243562_-|exonuclease-subunit-SbcD
MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAIIVAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNTTVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIITSQAGLNGIEKQQHLLAAITDYYQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYIALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVTQPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVEVLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLHTLAGEHEA
>NZ_CP010172.1|WP_000113933.1|3243751_3244441_+|phosphate-response-regulator-transcription-factor-PhoB
MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFSTRF
>NZ_CP010172.1|WP_000893623.1|3244498_3245794_+|phosphate-regulon-sensor-histidine-kinase-PhoR
MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLIWHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRSGAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRDFSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTPLTVLQGYLEMMNEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTHLLNEKVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTPEGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLAIVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD
>NZ_CP010172.1|WP_000149639.1|3246200_3247520_+|branched-chain-amino-acid-transporter-carrier-protein-BrnQ
MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLSQLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAFSDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH
>NZ_CP010172.1|WP_001295329.1|3247595_3248969_+|proline-specific-permease-ProY
MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHDRQLAENQ
>NZ_CP010172.1|WP_001310597.1|3249124_3250942_+|maltodextrin-glucosidase
MMLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDNEEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMPPARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVVLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN
>NZ_CP010172.1|WP_001009885.1|3250946_3251528_-|ACP-phosphodiesterase
MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHMHRRIDVLTDNLPEVREAREWFRSETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFVCYAREQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALRDSWYDLDAHYDALETRFWQFYPRMMAQASRKAL
>NZ_CP010172.1|WP_001266503.1|3251620_3252691_+|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFTDLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPKPGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDADRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVDTIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPFFDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRFFSYGDAMFITYNPQAINERVGE

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Crispr_ID: NZ_CP010172_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP010172_4

3377875-3377971

Orphan

Consensus_repeat	Method
GCTTGACGCGTCTTATCAGGCCTACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP010172_4

>merge|NZ_CP010172|4|3377875-3377971|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAACCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGATGCTTGACGCATCTTATCAGGCCTACAA

>NZ_CP010172|4|4|3377875-3377971|CRISPRCasFinder
GCTTGACGCGTCTTATCAGGCCTACAA	CCGGTGCCGCATCCGGCAATTGGTGCACAATGCCTGATGCGAT
GCTTGACGCATCTTATCAGGCCTACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP010172.1\|WP_000006900.1\|3365655_3367017_+\|allantoinase-AllB	unknown	unknown	gnl\|CDD\|169193
NZ_CP010172.1\|WP_001143556.1\|3382540_3383062_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|224899
NZ_CP010172.1\|WP_000912385.1\|3381119_3382505_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP010172.1\|WP_001333621.1\|3368396_3369542_+\|glycerate-3-kinase	unknown	unknown	gnl\|CDD\|182152
NZ_CP010172.1\|WP_000495367.1\|3374865_3376125_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
NZ_CP010172.1\|WP_000190288.1\|3383169_3383382_-\|ribosome-associated-protein-YbcJ	unknown	unknown	gnl\|CDD\|183166
NZ_CP010172.1\|WP_000855378.1\|3376947_3377841_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|181831
NZ_CP010172.1\|WP_001295318.1\|3379099_3379609_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP010172.1\|WP_000703900.1\|3371822_3372872_-\|ureidoglycolate-dehydrogenase	unknown	unknown	gnl\|CDD\|184985
NZ_CP010172.1\|WP_000815571.1\|3378035_3379103_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP010172.1\|WP_000255997.1\|3380451_3380946_-\|peptidylprolyl-isomerase-B	unknown	unknown	gnl\|CDD\|182734
NZ_CP010172.1\|WP_001310618.1\|3370565_3371801_-\|allantoate-deiminase	unknown	unknown	gnl\|CDD\|274471
NZ_CP010172.1\|WP_000776555.1\|3384720_3385263_+\|type-1-fimbrial-protein-subunit-FimA	unknown	unknown	gnl\|CDD\|237920
NZ_CP010172.1\|WP_072646334.1\|3383383_3384250_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|236760
NZ_CP010172.1\|WP_000212247.1\|3379726_3380449_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP010172.1\|WP_000580822.1\|3373188_3374856_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
NZ_CP010172.1\|WP_000988364.1\|3385482_3386175_+\|type-1-fimbria-chaperone-FimC	unknown	unknown	gnl\|CDD\|185117
NZ_CP010172.1\|WP_001302767.1\|3367073_3368375_+\|uracil/xanthine-transporter	unknown	unknown	gnl\|CDD\|183124
NZ_CP010172.1\|WP_000540997.1\|3369769_3370555_-\|(S)-ureidoglycine-aminohydrolase	unknown	unknown	gnl\|CDD\|200251
NZ_CP010172.1\|WP_000152519.1\|3376135_3376951_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658

Protein	Function_ID	Function_description	E-value
NZ_CP010172.1\|WP_000006900.1\|3365655_3367017_+\|allantoinase-AllB	gnl\|CDD\|169193	PRK08044, PRK08044, allantoinase AllB.	0
NZ_CP010172.1\|WP_001143556.1\|3382540_3383062_-\|metal-dependent-hydrolase	gnl\|CDD\|224899	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only].	1.2285e-30
NZ_CP010172.1\|WP_000912385.1\|3381119_3382505_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP010172.1\|WP_001333621.1\|3368396_3369542_+\|glycerate-3-kinase	gnl\|CDD\|182152	PRK09932, PRK09932, glycerate 3-kinase.	0
NZ_CP010172.1\|WP_000495367.1\|3374865_3376125_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.27269e-131
NZ_CP010172.1\|WP_000190288.1\|3383169_3383382_-\|ribosome-associated-protein-YbcJ	gnl\|CDD\|183166	PRK11507, PRK11507, ribosome-associated protein YbcJ.	1.38756e-42
NZ_CP010172.1\|WP_000855378.1\|3376947_3377841_+\|carbamate-kinase	gnl\|CDD\|181831	PRK09411, PRK09411, carbamate kinase; Reviewed.	0
NZ_CP010172.1\|WP_001295318.1\|3379099_3379609_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	1.14024e-91
NZ_CP010172.1\|WP_000703900.1\|3371822_3372872_-\|ureidoglycolate-dehydrogenase	gnl\|CDD\|184985	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional.	0
NZ_CP010172.1\|WP_000815571.1\|3378035_3379103_-\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	2.50904e-178
NZ_CP010172.1\|WP_000255997.1\|3380451_3380946_-\|peptidylprolyl-isomerase-B	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	9.12357e-121
NZ_CP010172.1\|WP_001310618.1\|3370565_3371801_-\|allantoate-deiminase	gnl\|CDD\|274471	TIGR03176, AllC, allantoate amidohydrolase. This enzyme catalyzes the breakdown of allantoate, first to ureidoglycine by hydrolysis and then decarboxylation of one of the two equivalent ureido groups. Ureidoglycine then spontaneously exchanges ammonia for water resulting in ureidoglycolate. This enzyme is an alternative to allantoicase (3.5.3.4) which releases urea. [Central intermediary metabolism, Nitrogen metabolism].	0
NZ_CP010172.1\|WP_000776555.1\|3384720_3385263_+\|type-1-fimbrial-protein-subunit-FimA	gnl\|CDD\|237920	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA.	9.67411e-92
NZ_CP010172.1\|WP_072646334.1\|3383383_3384250_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|236760	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD.	0
NZ_CP010172.1\|WP_000212247.1\|3379726_3380449_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.41122e-165
NZ_CP010172.1\|WP_000580822.1\|3373188_3374856_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	0
NZ_CP010172.1\|WP_000988364.1\|3385482_3386175_+\|type-1-fimbria-chaperone-FimC	gnl\|CDD\|185117	PRK15195, PRK15195, molecular chaperone FimC.	4.4332e-149
NZ_CP010172.1\|WP_001302767.1\|3367073_3368375_+\|uracil/xanthine-transporter	gnl\|CDD\|183124	PRK11412, PRK11412, uracil/xanthine transporter.	0
NZ_CP010172.1\|WP_000540997.1\|3369769_3370555_-\|(S)-ureidoglycine-aminohydrolase	gnl\|CDD\|200251	TIGR03214, ura-cupin, putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).	2.39799e-151
NZ_CP010172.1\|WP_000152519.1\|3376135_3376951_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	3.47659e-37

>NZ_CP010172.1|WP_000855378.1|3376947_3377841_+|carbamate-kinase
MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTDDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCISL
>NZ_CP010172.1|WP_000152519.1|3376135_3376951_+|DUF2877-domain-containing-protein
MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHRQGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPPAHPQPLAAAWMQRAEETGLFGPLALAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLLAAWYYGALDARSGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP
>NZ_CP010172.1|WP_000495367.1|3374865_3376125_+|DUF1116-domain-containing-protein
MFTSVAQANAAVIEQIRRARPHWLDVQPASSLISELNEGKTLLHAGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAILEQGEVNFIPCHHVNAVGPMGGITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLSAALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRALAPQIARLDHDKQHIAEVMDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFTAPVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAARAVSEEMAEIYLERNMQLQIPSWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQIGAGTVRAPLACFEQALEALAESMGIG
>NZ_CP010172.1|WP_000580822.1|3373188_3374856_+|acyl-CoA-synthetase-FdrA
MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKALLDTTGFWHDDFNNATPNDICVAIRSEAADAGIAQAIMQQLEEALKQLAQGSGSSQALMQVRRWDSACQKLPDANLALISVAGEYAAELANQALDRNLNVMMFSDNVTLEDEIQLKTRAREKGLLVMGPDCGTSMIAGTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVRLKIVNAMKATGKPTVALFLGYTPAVARDENVWFASSLDEAARLACLLSRVTARRNAIAPVSSGFICGLYTGGTLAAEAAGLLAGHLGVEADDTHQHGMMLDADSHQIIDLGDDFYTVGRPHPMIDPTLRNQLIADLGAKPQVRVLLLDVVIGFGATADPAASLVSAWQKACAARLDNQPLYAIATVTGTERDPQCRSQQIATLEDAGIAVVSSLPEATLLAAALIHPLSPAAQQHTPSLLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARLLERLQ
>NZ_CP010172.1|WP_000703900.1|3371822_3372872_-|ureidoglycolate-dehydrogenase
MKISRETLHQLIENKLCQAGLKREHAATVAEVLVYADARGIHSHGAVRVEYYAERISKGGTNREPEFRLEETGPCSAILHADNAAGQVAAKMGMEHAIKTAQQNGVAVVGISRMGHSGAISYFVQQAARAGFIGISMCQSDPMVVPFGGAEIYYGTNPLAFAAPGEGDEILTFDMATTVQAWGKVLDARSRNMSIPDTWAVDKNGVPTTDPFAVHALLPAAGPKGYGLMMMIDVLSGVLLGLPFGRQVSSMYDDLHAGRNLGQLHIVINPNFFSSSELFRQHLSQTMRELNAITPAPGFNQVYYPGQDQDIKQRKAAVEGIEIVDDIYQYLISDALYNTSYETKNPFAQ
>NZ_CP010172.1|WP_001310618.1|3370565_3371801_-|allantoate-deiminase
MITHFRQAIEETLPWLSSFGADPAGGMTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLNGTEYPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEGSRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFVDAMKACGFTLPNAPLTPRQDIKAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSRICHQSVEKAKRMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQLENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDAQIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQK
>NZ_CP010172.1|WP_000540997.1|3369769_3370555_-|(S)-ureidoglycine-aminohydrolase
MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLVKNIIPGFENCDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFALSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGYAPWLVSGNASELERIHYEGMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLDNNWIPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVEI
>NZ_CP010172.1|WP_001333621.1|3368396_3369542_+|glycerate-3-kinase
MKIVIAPDSFKESLSAEKCCQAIKAGFSTLFPDANYICLPIADGGEGTVDAMVAATGGNIVTLEVCGPMGEKVNAFYGLTGDGKTAVIEMAAASGLMLVAPEKRNPLLASSFGTGELIRHALDNDIRHIILGIGGSATVDGGMGMAQALGVRFLDADGQALAANGGNLARVASIEMDECDPRLANCHIEVACDVDNPLVGARGAAAVFGPQKGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAAGGMGIAAAVFLNADIKPGIEIVLNAVNLAQAVQGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVLGDGVEVVHQYGIDAVFSILPRLAPLAEVLASGETNLFNSARNIACAIKIGQGIKN
>NZ_CP010172.1|WP_001302767.1|3367073_3368375_+|uracil/xanthine-transporter
MFNFAVSRESLLSGFQWFFFIFCNTVVVPPTLLSAFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGEASRGTPINDIATSLAVGIALSGVLTMLIGFSGLGHRLARLFTPSVMVLFMLMLGAQLTTIFFKGMLGLPFGIADPNFKIQLPPFALSVAVMCLVLAMIIFLPQRFARYGLLVGTITGWLLWYFCFPSSHSLSGELHWQWFPLGSGGALSPGIILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYTRRSFIYGSVICLLVALVPALTRLFCSIPLPVSSAVMLVSYLPLLFSALVFSQQITFTARNIYRLALPLFVGIFLMALPPVYLQDLPLTLRPLLSNGLLVGILLAVLMDNLIPWERIE
>NZ_CP010172.1|WP_000006900.1|3365655_3367017_+|allantoinase-AllB
MSFDLIIKNGTVILENEARVVDIAVKGGKIAAIGQDLGDAKEVMDASGLVVSPGMVDAHTHISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTIDAAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGELGQPVLVHCENALICDELGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLHVCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLQQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEQGFPVAPKGQFILKHQQ
>NZ_CP010172.1|WP_000815571.1|3378035_3379103_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQSVITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAERSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSGEVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELGYVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEALIPLLPPEYASGVIWAQSKFG
>NZ_CP010172.1|WP_001295318.1|3379099_3379609_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVLENPDPRGAA
>NZ_CP010172.1|WP_000212247.1|3379726_3380449_-|UDP-2,3-diacylglucosamine-diphosphatase
MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFEAWIGDDDPNPLHRKMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKVLELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQTLFLALPLFVRKRIAARMRANSKEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGAWHTEGSMVKVTADDVELIHFPF
>NZ_CP010172.1|WP_000255997.1|3380451_3380946_-|peptidylprolyl-isomerase-B
MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRVINGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVTVSE
>NZ_CP010172.1|WP_000912385.1|3381119_3382505_+|cysteine--tRNA-ligase
MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQGTTWRRK
>NZ_CP010172.1|WP_001143556.1|3382540_3383062_-|metal-dependent-hydrolase
MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLSFKFGVAYGNVFGHRGFTHSLVFVFVVPLLCVFIGRRWFRAGLIRCWLFLTVSLLSHSLLDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLPGMLLMGMLWWRRR
>NZ_CP010172.1|WP_000190288.1|3383169_3383382_-|ribosome-associated-protein-YbcJ
MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA
>NZ_CP010172.1|WP_072646334.1|3383383_3384250_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSNPASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKSGFIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDPQDE
>NZ_CP010172.1|WP_000776555.1|3384720_3385263_+|type-1-fimbrial-protein-subunit-FimA
MKLRFISSALAAALFAATGSYAAVVDGGTIHFEGELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAVAFSGQADAINDNLLAIASSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTNVLHFSARYKGTGTSASAGQANADATFIMRYE
>NZ_CP010172.1|WP_000988364.1|3385482_3386175_+|type-1-fimbria-chaperone-FimC
MMTKIKLLMLIIFYLIISASAHAAGGIALGATRIIYPADAKQTAVWIRNSHTNERFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAADRESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSRSGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVNSQIPLPSGVQGKLKFQTVNDYGSVTPVREVNLN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP010172_2	2.19\|2215728\|35\|NZ_CP010172\|CRT	2215728-2215762	35	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246934-246968	0	1.0
NZ_CP010172_2	2.4\|2215365\|32\|NZ_CP010172\|PILER-CR	2215365-2215396	32	NZ_CP037443	Klebsiella sp. PO552 plasmid p2, complete sequence	42679-42710	1	0.969
NZ_CP010172_1	1.13\|2186545\|32\|NZ_CP010172\|CRISPRCasFinder,CRT	2186545-2186576	32	KT898133	Aeromonas phage phiARM81ld, complete genome	45655-45686	2	0.938
NZ_CP010172_2	2.13\|2215362\|35\|NZ_CP010172\|CRISPRCasFinder,CRT	2215362-2215396	35	NZ_CP037443	Klebsiella sp. PO552 plasmid p2, complete sequence	42676-42710	2	0.943
NZ_CP010172_1	1.1\|2186058\|31\|NZ_CP010172\|PILER-CR	2186058-2186088	31	NC_008712	Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence	320388-320418	5	0.839
NZ_CP010172_1	1.3\|2186180\|31\|NZ_CP010172\|PILER-CR	2186180-2186210	31	NC_016040	Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence	37867-37897	6	0.806
NZ_CP010172_1	1.7\|2186179\|32\|NZ_CP010172\|CRISPRCasFinder,CRT	2186179-2186210	32	NC_016040	Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence	37866-37897	6	0.812
NZ_CP010172_1	1.1\|2186058\|31\|NZ_CP010172\|PILER-CR	2186058-2186088	31	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	107507-107537	7	0.774
NZ_CP010172_1	1.1\|2186058\|31\|NZ_CP010172\|PILER-CR	2186058-2186088	31	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	199281-199311	7	0.774
NZ_CP010172_1	1.9\|2186301\|32\|NZ_CP010172\|CRISPRCasFinder,CRT	2186301-2186332	32	KC821619	Cellulophaga phage phi18:1, complete genome	6924-6955	7	0.781
NZ_CP010172_1	1.9\|2186301\|32\|NZ_CP010172\|CRISPRCasFinder,CRT	2186301-2186332	32	KC821627	Cellulophaga phage phi18:2, complete genome	6924-6955	7	0.781
NZ_CP010172_2	2.7\|2215548\|32\|NZ_CP010172\|PILER-CR	2215548-2215579	32	MT110073	Stenotrophomonas phage vB_SmaS_DLP_3, complete genome	39410-39441	7	0.781
NZ_CP010172_1	1.5\|2186057\|32\|NZ_CP010172\|CRISPRCasFinder,CRT	2186057-2186088	32	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	107507-107538	8	0.75
NZ_CP010172_1	1.5\|2186057\|32\|NZ_CP010172\|CRISPRCasFinder,CRT	2186057-2186088	32	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	199281-199312	8	0.75
NZ_CP010172_1	1.8\|2186240\|32\|NZ_CP010172\|CRISPRCasFinder,CRT	2186240-2186271	32	MN855878	Bacteriophage sp. isolate 336, complete genome	5171-5202	8	0.75
NZ_CP010172_1	1.13\|2186545\|32\|NZ_CP010172\|CRISPRCasFinder,CRT	2186545-2186576	32	MN901520	Halorubrum coriense virus Hardycor2, complete genome	16524-16555	8	0.75
NZ_CP010172_2	2.5\|2215426\|32\|NZ_CP010172\|PILER-CR	2215426-2215457	32	KC847113	Bacillus phage PBP180, complete sequence	100-131	8	0.75
NZ_CP010172_2	2.8\|2215609\|32\|NZ_CP010172\|PILER-CR	2215609-2215640	32	NZ_CP044084	Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence	347859-347890	8	0.75
NZ_CP010172_1	1.9\|2186301\|32\|NZ_CP010172\|CRISPRCasFinder,CRT	2186301-2186332	32	NZ_CP020483	Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence	383-414	9	0.719
NZ_CP010172_2	2.4\|2215365\|32\|NZ_CP010172\|PILER-CR	2215365-2215396	32	NZ_CP019063	Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence	287201-287232	9	0.719
NZ_CP010172_2	2.5\|2215426\|32\|NZ_CP010172\|PILER-CR	2215426-2215457	32	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	20152-20183	9	0.719
NZ_CP010172_2	2.5\|2215426\|32\|NZ_CP010172\|PILER-CR	2215426-2215457	32	NC_049837	Klebsiella phage vB_KpnS_Alina, complete genome	13583-13614	9	0.719
NZ_CP010172_2	2.9\|2215670\|32\|NZ_CP010172\|PILER-CR	2215670-2215701	32	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	11267-11298	9	0.719
NZ_CP010172_2	2.5\|2215426\|32\|NZ_CP010172\|PILER-CR	2215426-2215457	32	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	179050-179081	10	0.688
NZ_CP010172_3	3.1\|3237729\|59\|NZ_CP010172\|CRISPRCasFinder	3237729-3237787	59	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	97-155	10	0.831
NZ_CP010172_3	3.1\|3237729\|59\|NZ_CP010172\|CRISPRCasFinder	3237729-3237787	59	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40375-40433	11	0.814
NZ_CP010172_2	2.14\|2215423\|35\|NZ_CP010172\|CRISPRCasFinder,CRT	2215423-2215457	35	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	20152-20186	12	0.657

1. spacer 2.19|2215728|35|NZ_CP010172|CRT matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 0, identity: 1.0

ccggacgcactggatgcgatgatggacatcacttg	CRISPR spacer
ccggacgcactggatgcgatgatggacatcacttg	Protospacer
***********************************

2. spacer 2.4|2215365|32|NZ_CP010172|PILER-CR matches to NZ_CP037443 (Klebsiella sp. PO552 plasmid p2, complete sequence) position: , mismatch: 1, identity: 0.969

gcgagtaagagtactgagtattttaatctcat	CRISPR spacer
gcgagtaagagtgctgagtattttaatctcat	Protospacer
************.*******************

3. spacer 1.13|2186545|32|NZ_CP010172|CRISPRCasFinder,CRT matches to KT898133 (Aeromonas phage phiARM81ld, complete genome) position: , mismatch: 2, identity: 0.938

gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
gacgacgagacgccctggtgcgccgcgttcgt	Protospacer
*****.**************.***********

4. spacer 2.13|2215362|35|NZ_CP010172|CRISPRCasFinder,CRT matches to NZ_CP037443 (Klebsiella sp. PO552 plasmid p2, complete sequence) position: , mismatch: 2, identity: 0.943

tcggcgagtaagagtactgagtattttaatctcat	CRISPR spacer
acggcgagtaagagtgctgagtattttaatctcat	Protospacer
 **************.*******************

5. spacer 1.1|2186058|31|NZ_CP010172|PILER-CR matches to NC_008712 (Paenarthrobacter aurescens TC1 plasmid pTC1, complete sequence) position: , mismatch: 5, identity: 0.839

cattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
cgtcgactgcccgtggcgtcccgccgacctg	Protospacer
*.*.******************  ******

6. spacer 1.3|2186180|31|NZ_CP010172|PILER-CR matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.806

gcacgccctgccggaatctcccctcgctctc	CRISPR spacer
gcacgccctgccggaagatcccctcacgatt	Protospacer
****************  *******.*  *.

7. spacer 1.7|2186179|32|NZ_CP010172|CRISPRCasFinder,CRT matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.812

tgcacgccctgccggaatctcccctcgctctc	CRISPR spacer
tgcacgccctgccggaagatcccctcacgatt	Protospacer
*****************  *******.*  *.

8. spacer 1.1|2186058|31|NZ_CP010172|PILER-CR matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 7, identity: 0.774

cattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
cgtcgactgcccgtggggtcccagcgaaatc	Protospacer
*.*.************ ***** ****  *.

9. spacer 1.1|2186058|31|NZ_CP010172|PILER-CR matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.774

cattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
cgtcgactgcccgtggggtcccagcgaaatc	Protospacer
*.*.************ ***** ****  *.

10. spacer 1.9|2186301|32|NZ_CP010172|CRISPRCasFinder,CRT matches to KC821619 (Cellulophaga phage phi18:1, complete genome) position: , mismatch: 7, identity: 0.781

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
ctcttttttcttttcagggaaaataaaaccgc	Protospacer
  **** ** **************** .* **

11. spacer 1.9|2186301|32|NZ_CP010172|CRISPRCasFinder,CRT matches to KC821627 (Cellulophaga phage phi18:2, complete genome) position: , mismatch: 7, identity: 0.781

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
ctcttttttcttttcagggaaaataaaaccgc	Protospacer
  **** ** **************** .* **

12. spacer 2.7|2215548|32|NZ_CP010172|PILER-CR matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 7, identity: 0.781

aggggcagggagtgacgctggagcaggcgatc	CRISPR spacer
gggagggggcattgacgctggagcaggcgaac	Protospacer
.**.* .** * ****************** *

13. spacer 1.5|2186057|32|NZ_CP010172|CRISPRCasFinder,CRT matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 8, identity: 0.75

acattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
ccgtcgactgcccgtggggtcccagcgaaatc	Protospacer
 *.*.************ ***** ****  *.

14. spacer 1.5|2186057|32|NZ_CP010172|CRISPRCasFinder,CRT matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

acattgactgcccgtggcgtccccgcgacctt	CRISPR spacer
ccgtcgactgcccgtggggtcccagcgaaatc	Protospacer
 *.*.************ ***** ****  *.

15. spacer 1.8|2186240|32|NZ_CP010172|CRISPRCasFinder,CRT matches to MN855878 (Bacteriophage sp. isolate 336, complete genome) position: , mismatch: 8, identity: 0.75

agtaagccggttgattatcgcca----gggatatta	CRISPR spacer
agtaagcaggatgattatcgccaccatggcgt----	Protospacer
******* ** ************    ** .*

16. spacer 1.13|2186545|32|NZ_CP010172|CRISPRCasFinder,CRT matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 8, identity: 0.75

--gacgatgagacgccctggtgtgccgcgttcgt	CRISPR spacer
ccgccgcc--gacgctcgggtgtgccgcgttcgg	Protospacer
  * ** .  *****.* ***************

17. spacer 2.5|2215426|32|NZ_CP010172|PILER-CR matches to KC847113 (Bacillus phage PBP180, complete sequence) position: , mismatch: 8, identity: 0.75

gccatagactttattaacttcattgggggtta	CRISPR spacer
accatcgactttattaactacattagagagaa	Protospacer
.**** ************* ****.*.*.  *

18. spacer 2.8|2215609|32|NZ_CP010172|PILER-CR matches to NZ_CP044084 (Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cagggaaaccgttcgtacttatcgacctcaac	CRISPR spacer
cgctgtaaccattcgtactcatcgacctcttc	Protospacer
*.  * ****.********.*********  *

19. spacer 1.9|2186301|32|NZ_CP010172|CRISPRCasFinder,CRT matches to NZ_CP020483 (Campylobacter helveticus strain ATCC 51209 plasmid pHELV-5, complete sequence) position: , mismatch: 9, identity: 0.719

agctttattgttttcagggaaaataacgcggc	CRISPR spacer
acttttattgttttgagtgaaaataaaggcta	Protospacer
* .*********** ** ******** *

20. spacer 2.4|2215365|32|NZ_CP010172|PILER-CR matches to NZ_CP019063 (Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gcgagtaagagtactgagtattttaatctcat	CRISPR spacer
gacggtaagagtaccgagtatgttaattcccg	Protospacer
*  .**********.****** *****..*

21. spacer 2.5|2215426|32|NZ_CP010172|PILER-CR matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gccatagactttattaacttcattgggggtta	CRISPR spacer
gccatagaattttttaacttcattgcctaaag	Protospacer
******** *** ************   .  .

22. spacer 2.5|2215426|32|NZ_CP010172|PILER-CR matches to NC_049837 (Klebsiella phage vB_KpnS_Alina, complete genome) position: , mismatch: 9, identity: 0.719

gccatagactttattaacttcattgggggtta	CRISPR spacer
gccatacacgttattaacttcatcgccaatgt	Protospacer
****** ** *************.*  ..*

23. spacer 2.9|2215670|32|NZ_CP010172|PILER-CR matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

aaggggacggctacgggacgccgcctattgac	CRISPR spacer
tcggggatggctacggcacgccgccagagcac	Protospacer
  *****.******** ******** .   **

24. spacer 2.5|2215426|32|NZ_CP010172|PILER-CR matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 10, identity: 0.688

gccatagactttattaacttcattgggggtta	CRISPR spacer
atcatagtttttattaacttcattgaatctac	Protospacer
..***** .****************..  *

25. spacer 3.1|3237729|59|NZ_CP010172|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831

ggtgccagaaccgtaggccggataaggcgttcacgccgcatccggcaataagtgctccg-	CRISPR spacer
gagcacagaaccgtaggacggataaggcgttcacgccgcatccggcgat-cgtgcactga	Protospacer
*.   ************ ****************************.**  **** *.*

26. spacer 3.1|3237729|59|NZ_CP010172|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814

-ggtgccagaaccgtaggccggataaggcgttcacgccgcatccggcaataagtgctccg	CRISPR spacer
tcgcacca-aaccgtaggccggataaggcgtttacgccgcatccggcaaaaagccgtacc	Protospacer
  *..*** ***********************.**************** ***.  * *

27. spacer 2.14|2215423|35|NZ_CP010172|CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.657

tcggccatagactttattaacttcattgggggtta	CRISPR spacer
atcgccatagaattttttaacttcattgcctaaag	Protospacer
 . ******** *** ************   .  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

10199 : 137315

110

Enterobacteria_phage(31.03%)

integrase,protease,plate,tail,portal,terminase,transposase,lysis

attL 54569:54628|attR 99095:99154

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085967273.1\|10199_11412_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.6e-101	57.8
WP_000706914.1\|11632_11767_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_001091891.1\|13018_14413_+	MHS family MFS transporter	NA	NA	NA	NA
WP_000194408.1\|14517_15549_+	LacI family transcriptional regulator	NA	NA	NA	NA
WP_000671481.1\|15523_16543_+	nucleoside hydrolase	NA	NA	NA	NA
WP_001094740.1\|16606_17320_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	5.2e-17	37.7
WP_000849708.1\|20336_20615_+	DUF5339 domain-containing protein	NA	NA	NA	NA
WP_001033555.1\|20952_21984_-	isoaspartyl peptidase/L-asparaginase	NA	NA	NA	NA
WP_001333102.1\|22507_22954_-	maturase	NA	NA	NA	NA
WP_000598813.1\|23599_24961_-	C4-dicarboxylate ABC transporter	NA	NA	NA	NA
WP_000355772.1\|24957_26214_-	peptidase T	NA	NA	NA	NA
WP_000086506.1\|27079_28480_+	aspartate ammonia-lyase	NA	NA	NA	NA
WP_000351505.1\|28635_29970_+	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_063625918.1\|30457_31504_+	L-asparaginase 2	NA	NA	NA	NA
WP_001067029.1\|32097_32823_-	two-component system response regulator DcuR	NA	NA	NA	NA
WP_000361270.1\|33801_34458_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_000455810.1\|35983_37363_+	glycoside hydrolase family 1 protein	NA	NA	NA	NA
WP_000887498.1\|37373_37685_+	PTS cellobiose transporter subunit IIA	NA	NA	NA	NA
WP_085967274.1\|38757_39931_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.0e-134	72.5
WP_085949199.1\|39996_41270_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	6.6e-172	96.0
WP_000282090.1\|42031_42595_-	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_085967274.1\|44052_45226_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	5.0e-134	72.5
WP_113262936.1\|45458_46304_+	mobilization protein	NA	NA	NA	NA
WP_001296720.1\|46562_47270_-	replication initiation protein	A0A218MNI2	uncultured_virus	1.3e-15	27.9
WP_000091749.1\|47800_48055_-	hypothetical protein	NA	NA	NA	NA
WP_000120392.1\|50705_50933_-	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_000266639.1\|51038_51266_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_001186448.1\|51972_53589_+	hypothetical protein	NA	NA	NA	NA
WP_024233400.1\|53675_54272_-	hypothetical protein	A0A1B0VBK8	Salmonella_phage	2.9e-98	87.9
54569:54628	attL	NA	NA	NA	NA
WP_063118745.1\|55011_59466_-	hypothetical protein	A0A2H4PQV1	Staphylococcus_phage	1.1e-43	32.4
WP_063628607.1\|60003_60588_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.4e-105	96.4
WP_072644212.1\|60587_63866_-\|tail	phage tail protein	X2KTY7	Enterobacteria_phage	6.5e-06	58.8
WP_001233090.1\|63930_64530_-	Ail/Lom family protein	A5LH44	Enterobacteria_phage	8.2e-109	97.5
WP_001309913.1\|68159_68807_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.5e-111	96.7
WP_032151194.1\|68704_69448_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.3e-148	96.0
WP_063628598.1\|69453_70152_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	3.0e-134	99.6
WP_039023164.1\|70161_70491_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	99.1
WP_044064114.1\|70490_73556_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	99.4
WP_001161009.1\|73527_73857_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_001440689.1\|73865_74252_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	6.1e-65	99.2
WP_000211109.1\|74312_75056_-\|tail	tail protein	A0A291AWU6	Escherichia_phage	7.8e-133	100.0
WP_001079398.1\|75067_75469_-\|tail	tail protein	A0A291AWY2	Escherichia_phage	8.3e-73	100.0
WP_032171305.1\|75465_76044_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.6e-101	99.0
WP_001283144.1\|76055_76331_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	8.6e-45	98.9
WP_032171307.1\|76323_76647_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	9.4e-51	99.1
WP_077777969.1\|76733_78761_-\|protease	Clp protease ClpP	A5LH30	Enterobacteria_phage	0.0e+00	99.4
WP_052249886.1\|78744_80214_-\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	3.1e-282	99.8
WP_001072975.1\|80213_80426_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_025670557.1\|80422_82525_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	97.1
WP_000349509.1\|82524_83016_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.3e-72	87.2
WP_021512737.1\|83691_83844_-	hypothetical protein	A0A291AWZ2	Escherichia_phage	4.7e-21	98.0
WP_001341210.1\|83831_84299_-\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	7.7e-78	100.0
WP_001135250.1\|84295_84793_-	lysozyme RrrD	A0A291AWW2	Escherichia_phage	4.5e-92	100.0
WP_000839596.1\|84792_85008_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000799656.1\|85075_86128_-	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.7e-208	100.0
WP_001504956.1\|86277_86472_-	hypothetical protein	Q8SBE3	Shigella_phage	5.1e-28	100.0
WP_032083250.1\|86884_88336_+	ATP-binding protein	NA	NA	NA	NA
WP_001504953.1\|88508_88880_-	phage antitermination Q family protein	Q777W5	Enterobacteria_phage	6.1e-54	82.5
WP_001360050.1\|88897_89887_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.5e-195	100.0
WP_001061450.1\|89894_90704_-	KilA-N domain-containing protein	S5MC03	Escherichia_phage	8.2e-152	100.0
WP_000767133.1\|90723_91113_-	RusA family crossover junction endodeoxyribonuclease	A5LH74	Enterobacteria_phage	1.6e-68	99.2
WP_000210181.1\|91109_91436_-	LexA family transcriptional regulator	U5P451	Shigella_phage	9.2e-54	100.0
WP_072644209.1\|91435_91930_-	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	1.6e-86	98.1
WP_000061531.1\|91926_92745_-	helix-turn-helix domain-containing protein	Q8SBF1	Shigella_phage	5.2e-122	99.6
WP_063628585.1\|92970_93807_-	ash family protein	Q8SBF3	Shigella_phage	2.9e-136	91.0
WP_063628586.1\|93803_94355_-	protein YmfL	S5FXP0	Shigella_phage	6.7e-97	96.2
WP_000649477.1\|94398_94599_-	transcriptional regulator	U5P445	Shigella_phage	7.9e-32	100.0
WP_000848748.1\|94689_95364_+	LexA family transcriptional repressor	U5P0T5	Shigella_phage	1.2e-132	100.0
WP_000917896.1\|95536_95833_+	hypothetical protein	Q8SBF7	Shigella_phage	1.2e-52	100.0
WP_000008235.1\|96509_97046_+	5'-deoxynucleotidase	S5MW55	Escherichia_phage	8.2e-100	98.9
WP_032301943.1\|97036_97399_+	phage protein	U5P092	Shigella_phage	1.0e-66	98.3
WP_000627693.1\|97398_97704_+	hypothetical protein	U5P0J0	Shigella_phage	3.4e-50	99.0
WP_000433939.1\|97703_98054_+	helix-turn-helix domain-containing protein	U5P4J3	Shigella_phage	4.9e-61	100.0
WP_000051894.1\|97930_99094_+\|integrase	site-specific integrase	U5P434	Shigella_phage	4.5e-228	99.5
WP_000893278.1\|99298_100552_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	9.8e-96	47.2
99095:99154	attR	NA	NA	NA	NA
WP_001285288.1\|100563_101667_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000749867.1\|101954_103010_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.6e-118	61.1
WP_000174677.1\|103048_103450_-	sigma factor-binding protein Crl	NA	NA	NA	NA
WP_000189532.1\|103507_104752_-	esterase FrsA	NA	NA	NA	NA
WP_001291990.1\|104843_105302_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
WP_001292994.1\|105562_107020_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA
WP_001326471.1\|107076_107613_-	peptide chain release factor H	NA	NA	NA	NA
WP_001295202.1\|107545_107812_-	hypothetical protein	NA	NA	NA	NA
WP_001059892.1\|108117_108570_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001263489.1\|108579_108978_-	type II toxin-antitoxin system mRNA interferase toxin YafO	NA	NA	NA	NA
WP_000554758.1\|108980_109274_-	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA
WP_001226164.1\|109325_110381_-	DNA polymerase IV	NA	NA	NA	NA
WP_000207552.1\|110451_111237_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
WP_001334802.1\|111181_112921_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
WP_000006255.1\|113144_113642_-\|transposase	REP-associated tyrosine transposase RayT	NA	NA	NA	NA
WP_000056849.1\|113817_114567_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	9.0e-20	38.5
WP_000729703.1\|114776_115037_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA
WP_000615983.1\|115039_115318_+	type II toxin-antitoxin system mRNA interferase toxin YafQ	NA	NA	NA	NA
WP_001225679.1\|115473_116214_+	murein L,D-transpeptidase	NA	NA	NA	NA
WP_000333380.1\|116184_116952_-	class II glutamine amidotransferase	NA	NA	NA	NA
WP_000284050.1\|117157_117736_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.1e-14	32.0
WP_000973083.1\|117975_120420_+	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA
WP_000532698.1\|120462_120936_-	C-lysozyme inhibitor	NA	NA	NA	NA
WP_001118036.1\|121089_121860_+	2-oxoglutaramate amidase	NA	NA	NA	NA
WP_000420818.1\|121900_123037_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_001101839.1\|123467_123860_-	hypothetical protein	NA	NA	NA	NA
WP_000508724.1\|123837_128070_-	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	6.4e-22	43.1
WP_032329316.1\|128145_130287_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.4e-25	25.0
WP_001142958.1\|130496_131015_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_000037397.1\|131709_132210_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_000123970.1\|132244_132469_+	hypothetical protein	NA	NA	NA	NA
WP_000056989.1\|132519_133995_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_000611744.1\|134001_134415_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_000393852.1\|134418_136269_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000348793.1\|136232_137315_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_2

1884556 : 1945036

Escherichia_phage(13.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|1884556_1885261_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000779483.1\|1886084_1886411_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_025492088.1\|1886407_1886671_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_032153714.1\|1886742_1887609_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_000839265.1\|1887693_1887891_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_023155722.1\|1887902_1888394_-	hypothetical protein	NA	NA	NA	NA
WP_000854735.1\|1888390_1888768_-	toxin	NA	NA	NA	NA
WP_032153712.1\|1888814_1889189_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_000692345.1\|1889268_1889490_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
WP_001186715.1\|1889558_1890035_-	RadC family protein	NA	NA	NA	NA
WP_032153711.1\|1890050_1890536_-	antirestriction protein	A9J566	Pseudomonas_phage	9.0e-13	31.0
WP_001234693.1\|1890627_1891446_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	1.6e-46	39.0
WP_023155727.1\|1891536_1891746_-	DUF905 family protein	NA	NA	NA	NA
WP_023155728.1\|1891775_1892453_-	hypothetical protein	NA	NA	NA	NA
WP_024166630.1\|1892571_1893456_-	GTPase	NA	NA	NA	NA
WP_023155730.1\|1893562_1894495_+	hypothetical protein	NA	NA	NA	NA
WP_032153709.1\|1894491_1895301_-	hypothetical protein	NA	NA	NA	NA
WP_032153707.1\|1897051_1897783_+	inovirus Gp2 family protein	NA	NA	NA	NA
WP_001067608.1\|1898967_1900572_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_032153705.1\|1902168_1902735_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_001421645.1\|1902854_1903004_-	hypothetical protein	NA	NA	NA	NA
WP_032153703.1\|1903018_1903591_+	hypothetical protein	NA	NA	NA	NA
WP_000958154.1\|1903659_1903896_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_032153702.1\|1904164_1904713_+	hypothetical protein	NA	NA	NA	NA
WP_131501864.1\|1906833_1906947_+\|transposase	transposase	Q6H9S5	Enterobacteria_phage	3.4e-08	71.4
WP_001043260.1\|1908604_1909420_+	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_001082319.1\|1909480_1910284_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_000480968.1\|1910283_1911120_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_000844627.1\|1911425_1911668_+\|transposase	transposase	NA	NA	NA	NA
WP_000164043.1\|1911699_1912350_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_032153701.1\|1912455_1913655_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_001255015.1\|1913921_1914227_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_023300759.1\|1914254_1915469_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	5.5e-19	28.7
WP_021598067.1\|1915685_1916570_-	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_021512463.1\|1917190_1917457_-	P fimbrial regulatory protein KS71A	NA	NA	NA	NA
WP_000930062.1\|1917891_1918206_+	major pilus subunit operon regulatory protein PapB	NA	NA	NA	NA
WP_000271619.1\|1919126_1920359_-	dNTP triphosphohydrolase	NA	NA	NA	NA
WP_000878218.1\|1920509_1921376_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.3e-51	40.6
WP_161954780.1\|1921372_1921603_-\|transposase	transposase	NA	NA	NA	NA
WP_000174035.1\|1921838_1922819_+	thymidylate synthase	A0A218MLB7	uncultured_virus	7.3e-22	34.2
WP_000820616.1\|1922815_1923760_+	hypothetical protein	NA	NA	NA	NA
WP_000637419.1\|1923762_1924845_-	ImmA/IrrE family metallo-endopeptidase	A0A075BTZ7	Microcystis_phage	5.5e-10	38.6
WP_032153698.1\|1925311_1925578_+	hypothetical protein	A0A1L2CUJ8	Pectobacterium_phage	1.0e-26	71.6
WP_000438165.1\|1926999_1930413_+	DEAD/DEAH box helicase family protein	Q6NDX2	Leptospira_phage	8.5e-17	26.2
WP_000627728.1\|1930476_1932111_+	N-6 DNA methylase	J7I0U9	Acinetobacter_phage	2.6e-32	30.9
WP_000742120.1\|1932107_1933250_+	restriction endonuclease	NA	NA	NA	NA
WP_000778955.1\|1933258_1934881_+	AAA family ATPase	NA	NA	NA	NA
WP_000499115.1\|1934880_1935777_+	hypothetical protein	NA	NA	NA	NA
WP_000571844.1\|1936398_1937145_+	porin family protein	NA	NA	NA	NA
WP_000228490.1\|1937564_1938461_+	WYL domain-containing protein	A0A0R6PH67	Moraxella_phage	2.1e-31	27.3
WP_001207396.1\|1938509_1939589_+	hypothetical protein	NA	NA	NA	NA
WP_001100182.1\|1939635_1941207_+	ATP--cob(I)alamin adenosyltransferase	NA	NA	NA	NA
WP_000766274.1\|1941203_1941470_+	hypothetical protein	NA	NA	NA	NA
WP_001238004.1\|1941609_1941807_+	hypothetical protein	NA	NA	NA	NA
WP_025492097.1\|1941859_1943533_+	phosphoethanolamine transferase	NA	NA	NA	NA
WP_032153697.1\|1943676_1944711_-	tetratricopeptide repeat family protein	NA	NA	NA	NA
WP_023181049.1\|1944760_1945036_+\|transposase	IS1 family transposase	Q71TE9	Escherichia_phage	3.8e-45	97.8

DBSCAN-SWA_3

2620914 : 2679024

Stx2-converting_phage(28.57%)

integrase,transposase

attL 2607209:2607227|attR 2679200:2679218

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2607209:2607227	attL	NA	NA	NA	NA
WP_001610790.1\|2620914_2621517_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E036	Clostridioides_phage	1.8e-07	33.3
WP_000998321.1\|2621821_2624134_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001493615.1\|2624130_2625066_+	hypothetical protein	NA	NA	NA	NA
WP_072646255.1\|2625876_2627052_-	hypothetical protein	NA	NA	NA	NA
WP_000804439.1\|2629017_2629620_-	hypothetical protein	NA	NA	NA	NA
WP_001347898.1\|2629713_2629920_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_072646250.1\|2630303_2631095_-	hypothetical protein	NA	NA	NA	NA
WP_072146520.1\|2632162_2632312_+	hemolysin activation protein	NA	NA	NA	NA
WP_000860849.1\|2632543_2633143_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_085947772.1\|2633324_2634537_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	8.3e-100	57.1
WP_000270955.1\|2634775_2635159_+	hypothetical protein	NA	NA	NA	NA
WP_001610781.1\|2635155_2635581_+	hypothetical protein	NA	NA	NA	NA
WP_154675828.1\|2635925_2636093_+	hypothetical protein	NA	NA	NA	NA
WP_001610777.1\|2638784_2639813_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_001610775.1\|2639861_2640290_-	heme-binding protein	NA	NA	NA	NA
WP_001610774.1\|2640282_2641188_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_001610773.1\|2641181_2642009_-	SDR family oxidoreductase	A0A167REC2	Powai_lake_megavirus	5.3e-05	29.2
WP_001610772.1\|2642032_2643136_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	NA	NA	NA
WP_001610771.1\|2643193_2644648_-	MFS transporter	NA	NA	NA	NA
WP_001610770.1\|2644790_2646446_-	hypothetical protein	NA	NA	NA	NA
WP_001610769.1\|2646463_2648071_-	FGGY-family carbohydrate kinase	NA	NA	NA	NA
WP_077250878.1\|2648908_2649199_+	hypothetical protein	NA	NA	NA	NA
WP_032158436.1\|2649923_2650601_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	2.5e-21	46.0
WP_001610764.1\|2650600_2650948_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_000906844.1\|2652486_2653158_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_001361993.1\|2653205_2653565_-	hypothetical protein	NA	NA	NA	NA
WP_000186596.1\|2654325_2654613_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_000950719.1\|2654606_2654945_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_000088311.1\|2658510_2658813_+\|transposase	transposase	NA	NA	NA	NA
WP_001361988.1\|2658848_2659655_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	8.3e-64	44.4
WP_000864948.1\|2660210_2661236_-	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_072646253.1\|2661207_2662497_-	MFS transporter	NA	NA	NA	NA
WP_123863910.1\|2663730_2664021_-	hypothetical protein	NA	NA	NA	NA
WP_000424707.1\|2664771_2667081_+	ATPase	NA	NA	NA	NA
WP_000117528.1\|2667084_2668401_+	ATP-binding protein	NA	NA	NA	NA
WP_001610752.1\|2668397_2670596_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_000100142.1\|2671077_2672094_+	hypothetical protein	NA	NA	NA	NA
WP_000839828.1\|2672737_2675098_+	hypothetical protein	NA	NA	NA	NA
WP_000165811.1\|2675274_2675574_+\|transposase	transposase	NA	NA	NA	NA
WP_000160236.1\|2676410_2676566_-	hypothetical protein	NA	NA	NA	NA
WP_001131472.1\|2677833_2679024_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	7.6e-130	57.3
2679200:2679218	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2957382 : 3021823

Bacillus_phage(20.0%)

integrase,transposase,tRNA,capsid

attL 2988746:2988761|attR 3019928:3019943

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038991242.1\|2957382_2958741_+\|integrase	integrase	NA	NA	NA	NA
WP_064141402.1\|2958854_2960300_+	ATP-binding protein	E5E3R2	Burkholderia_phage	4.9e-06	27.1
WP_072646268.1\|2960458_2961013_-\|integrase	tyrosine-type recombinase/integrase	Q8SBK8	Clostridium_phage	4.6e-13	32.9
WP_032439230.1\|2962001_2962361_-	hypothetical protein	NA	NA	NA	NA
WP_032719880.1\|2963072_2963501_+	hypothetical protein	NA	NA	NA	NA
WP_023286072.1\|2963709_2963901_+	hypothetical protein	NA	NA	NA	NA
WP_072646270.1\|2963875_2964505_+	hypothetical protein	NA	NA	NA	NA
WP_072646271.1\|2964520_2965063_+	hypothetical protein	NA	NA	NA	NA
WP_072646272.1\|2965224_2965572_+	hypothetical protein	NA	NA	NA	NA
WP_072646273.1\|2965571_2967728_+	chemotaxis protein	NA	NA	NA	NA
WP_064182896.1\|2968369_2968705_+	hypothetical protein	NA	NA	NA	NA
WP_072646274.1\|2968726_2969785_+\|capsid	major capsid protein E	NA	NA	NA	NA
WP_064151542.1\|2969850_2970063_+	hypothetical protein	NA	NA	NA	NA
WP_064182910.1\|2970189_2970564_+	hypothetical protein	NA	NA	NA	NA
WP_072646275.1\|2971048_2971837_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000822274.1\|2971833_2972634_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_012135921.1\|2972698_2973517_+	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	1.9e-23	38.0
WP_000434038.1\|2973568_2974315_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000011957.1\|2974288_2975254_-	sugar kinase	NA	NA	NA	NA
WP_000846231.1\|2975250_2976255_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	6.4e-13	29.0
WP_000858484.1\|2976251_2977529_-	nucleoside permease	NA	NA	NA	NA
WP_000129551.1\|2977785_2978838_+	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_073529377.1\|2979145_2980000_+	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_001741990.1\|2980028_2981291_+	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_000182899.1\|2981300_2981753_+	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_000823270.1\|2981783_2982068_+	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000490679.1\|2982071_2983427_+	galactitol permease IIC component	NA	NA	NA	NA
WP_000844219.1\|2983474_2984515_+	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_023157455.1\|2984614_2985394_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000807356.1\|2985475_2986375_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.7e-12	29.0
WP_001318299.1\|2986780_2987098_+	hypothetical protein	NA	NA	NA	NA
WP_000476014.1\|2987428_2988790_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.9e-217	99.7
2988746:2988761	attL	NA	NA	NA	NA
WP_000929408.1\|2988936_2989269_-	YegP family protein	NA	NA	NA	NA
WP_000137877.1\|2989459_2990182_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	3.7e-31	33.6
WP_000675150.1\|2990178_2991582_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	3.0e-32	29.0
WP_000130850.1\|2991578_2992994_-	MFS transporter	NA	NA	NA	NA
WP_072643228.1\|2992994_2996072_-	multidrug efflux RND transporter permease subunit MdtC	NA	NA	NA	NA
WP_001197905.1\|2996072_2999195_-	multidrug efflux RND transporter permease subunit MdtB	NA	NA	NA	NA
WP_000679011.1\|2999194_3000442_-	multidrug efflux RND transporter subunit MdtA	NA	NA	NA	NA
WP_001386899.1\|3000720_3000777_+	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA
WP_010723109.1\|3001049_3001109_+	type I toxin-antitoxin system toxin IbsA	NA	NA	NA	NA
WP_000003154.1\|3001329_3001989_+	VWA domain-containing protein	NA	NA	NA	NA
WP_000119090.1\|3001985_3002747_+	protein-serine/threonine phosphatase PphC	NA	NA	NA	NA
WP_000722348.1\|3002811_3003273_-	YegJ family protein	NA	NA	NA	NA
WP_000856085.1\|3003472_3005419_+	protein kinase YegI	NA	NA	NA	NA
WP_000469697.1\|3005431_3006784_-	molecular chaperone	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.1e-07	21.1
WP_000288400.1\|3006917_3007766_+	DNA-3-methyladenine glycosylase 2	NA	NA	NA	NA
WP_073529378.1\|3007883_3011201_-	diguanylate cyclase	NA	NA	NA	NA
WP_001295424.1\|3011518_3012160_+	uridine kinase	A0A1V0SAA3	Catovirus	3.2e-34	36.9
WP_001234767.1\|3012251_3012833_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	1.3e-31	42.1
WP_073529379.1\|3012854_3014708_+	outer membrane assembly protein AsmA	NA	NA	NA	NA
WP_016230728.1\|3015159_3017850_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0R6PEZ3	Moraxella_phage	9.3e-35	43.1
WP_024192426.1\|3018602_3019493_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.6e-44	40.3
WP_160348101.1\|3019768_3020623_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	2.7e-68	45.1
3019928:3019943	attR	NA	NA	NA	NA
WP_001254932.1\|3020671_3021823_-\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6

DBSCAN-SWA_5

4005557 : 4029211

Escherichia_phage(30.43%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000102136.1\|4005557_4007999_-	exonuclease	V5UQJ3	Shigella_phage	3.1e-114	46.9
WP_001070255.1\|4008092_4008284_-	DUF1482 family protein	NA	NA	NA	NA
WP_000854558.1\|4008280_4008469_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001517906.1\|4008869_4009073_+	hypothetical protein	NA	NA	NA	NA
WP_001171946.1\|4009037_4009256_-	hypothetical protein	NA	NA	NA	NA
WP_001092153.1\|4009348_4009549_+	hypothetical protein	NA	NA	NA	NA
WP_001420344.1\|4009980_4010319_-	peptidase S24	H9C160	Pectobacterium_phage	2.5e-06	32.0
WP_000747951.1\|4010710_4010953_+	hypothetical protein	H9C161	Pectobacterium_phage	4.8e-07	55.8
WP_000693850.1\|4010936_4011362_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262390.1\|4011433_4012504_+	hypothetical protein	A0A088CD36	Shigella_phage	2.6e-52	56.6
WP_001151150.1\|4012544_4012967_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.6e-64	90.6
WP_000761441.1\|4012967_4013381_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	2.0e-58	99.2
WP_001224662.1\|4013474_4013657_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	1.4e-27	100.0
WP_011076332.1\|4014270_4014489_+	hypothetical protein	NA	NA	NA	NA
WP_001013636.1\|4014691_4014904_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	8.9e-26	96.9
WP_032155008.1\|4015071_4015350_+	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
WP_001221526.1\|4015351_4016410_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.5e-89	48.0
WP_000139999.1\|4016410_4016791_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.6
WP_072646276.1\|4016787_4017642_+	antitermination protein	K7P7B9	Enterobacteria_phage	4.1e-77	58.2
WP_106104550.1\|4017995_4018082_+	DUF3927 family protein	NA	NA	NA	NA
WP_001333559.1\|4018570_4018783_-	hypothetical protein	NA	NA	NA	NA
WP_001333560.1\|4018853_4019189_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	1.4e-44	74.8
WP_000874243.1\|4019449_4019638_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	7.2e-27	95.2
WP_001333561.1\|4019634_4019796_+	hypothetical protein	Q08JA2	Stx2-converting_phage	5.9e-14	87.0
WP_000372595.1\|4019945_4020161_+\|holin	holin	A0A2R2Z340	Escherichia_phage	3.4e-33	98.6
WP_000193264.1\|4020165_4020516_+	YdfR family protein	K7PGU6	Enterobacteria_phage	1.4e-36	94.0
WP_000992097.1\|4020579_4021113_+	lysozyme	Q08J98	Stx2-converting_phage	1.5e-98	93.2
WP_075202333.1\|4021329_4021512_+	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	2.2e-17	77.0
WP_000738421.1\|4021602_4021896_-	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	5.9e-44	90.7
WP_001189123.1\|4023818_4025327_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	3.6e-44	31.8
WP_000241001.1\|4026004_4026673_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000799406.1\|4027227_4028091_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000531594.1\|4028074_4029211_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8

DBSCAN-SWA_6

4436686 : 4496466

Enterobacteria_phage(36.73%)

integrase,head,tail,holin,portal,terminase,lysis,transposase,capsid

attL 4468846:4468862|attR 4501161:4501177

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000527809.1\|4436686_4438147_-	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	1.5e-42	29.6
WP_000347482.1\|4438235_4439519_-	MHS family MFS transporter	NA	NA	NA	NA
WP_120795384.1\|4440123_4440237_+	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_000836768.1\|4440305_4440539_+	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_000078177.1\|4440855_4441446_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
WP_000885611.1\|4441543_4442119_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.5e-103	95.3
WP_072646389.1\|4442118_4445193_-\|tail	phage tail protein	U5N099	Enterobacteria_phage	2.1e-67	81.4
WP_001233090.1\|4445257_4445857_-	Ail/Lom family protein	A5LH44	Enterobacteria_phage	8.2e-109	97.5
WP_000090891.1\|4449486_4450119_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_072646391.1\|4450055_4450799_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.7e-144	95.1
WP_044861874.1\|4450804_4451503_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	6.2e-132	98.3
WP_000847345.1\|4451502_4451832_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_072646392.1\|4451828_4454390_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	90.1
WP_000459457.1\|4454382_4454817_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479155.1\|4454798_4455221_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.9e-72	99.3
WP_072646397.1\|4455236_4455977_-\|tail	phage tail protein	A0A2I6TC77	Escherichia_phage	2.1e-130	97.2
WP_000683117.1\|4455984_4456380_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	6.5e-70	98.5
WP_072646393.1\|4456376_4456955_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.7e-79	97.9
WP_000752994.1\|4456966_4457320_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	9.0e-63	100.0
WP_000158868.1\|4457331_4457727_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	5.7e-58	95.5
WP_032140162.1\|4457768_4458794_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	3.8e-186	96.8
WP_024238048.1\|4458849_4459182_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	5.5e-54	98.2
WP_072646394.1\|4459191_4460511_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.6e-232	98.2
WP_072646395.1\|4460491_4462093_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.7e-311	99.8
WP_000198149.1\|4462089_4462296_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_072646396.1\|4462292_4464218_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.4
WP_000453611.1\|4464192_4464738_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.3e-94	98.3
WP_001307652.1\|4465126_4465321_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	9.7e-27	96.8
WP_000548590.1\|4465571_4465778_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-22	77.9
WP_001019207.1\|4466073_4466247_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_085949199.1\|4466466_4467739_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	6.6e-172	96.0
WP_001443523.1\|4467755_4467911_-	hypothetical protein	NA	NA	NA	NA
WP_071528545.1\|4468058_4468247_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|4468257_4468470_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071778.1\|4468833_4469331_-	DUF2514 domain-containing protein	NA	NA	NA	NA
4468846:4468862	attL	NA	NA	NA	NA
WP_001101173.1\|4469327_4469861_-	lysozyme	K7PLY1	Enterobacteria_phage	1.4e-96	93.8
WP_001557934.1\|4469974_4470235_+	hypothetical protein	NA	NA	NA	NA
WP_000189900.1\|4470182_4470734_-	YdfR family protein	Q08JA0	Stx2-converting_phage	1.0e-36	51.1
WP_000839588.1\|4470738_4470954_-\|holin	holin	A5LH82	Enterobacteria_phage	1.2e-30	91.5
WP_001146314.1\|4471144_4471858_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_072646420.1\|4472264_4473224_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_001616188.1\|4473416_4473941_+	outer membrane lipoprotein Blc	A0A1W6JNX6	Morganella_phage	1.3e-46	52.9
WP_001204787.1\|4474096_4474474_-	antitermination protein	Q777W5	Enterobacteria_phage	1.8e-53	82.5
WP_001265274.1\|4474491_4475541_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	3.0e-114	58.2
WP_012775982.1\|4475542_4475821_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
WP_000980999.1\|4475887_4476139_-	hypothetical protein	NA	NA	NA	NA
WP_072646419.1\|4476355_4476568_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.5e-28	94.3
WP_021533427.1\|4477253_4477949_+	hypothetical protein	NA	NA	NA	NA
WP_021533428.1\|4477961_4478615_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_021533429.1\|4478929_4479829_-	SMEK domain-containing protein	NA	NA	NA	NA
WP_021533430.1\|4480081_4480504_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	4.8e-63	91.8
WP_000054495.1\|4480544_4481510_-	hypothetical protein	U5P0A0	Shigella_phage	3.4e-56	60.8
WP_072646418.1\|4481490_4482012_-	hypothetical protein	NA	NA	NA	NA
WP_000921596.1\|4481995_4482223_-	transcriptional regulator	NA	NA	NA	NA
WP_000381212.1\|4482303_4482711_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	7.2e-32	51.9
WP_072646417.1\|4482879_4483035_+	DUF1391 family protein	M4QQ57	Salicola_phage	8.8e-07	51.1
WP_000344944.1\|4483036_4483612_+	hypothetical protein	NA	NA	NA	NA
WP_000854559.1\|4484098_4484287_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001083281.1\|4484283_4484475_+\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_072652568.1\|4484568_4487040_+	exonuclease	A0A192Y6E0	Salmonella_phage	2.7e-57	56.1
WP_001296941.1\|4487127_4487364_+	excisionase family protein	S4TND0	Salmonella_phage	6.1e-15	50.7
WP_001459782.1\|4487398_4488679_+\|integrase	site-specific integrase	B6DZ48	Enterobacteria_phage	2.3e-156	62.6
WP_001389342.1\|4488680_4488809_-	hypothetical protein	NA	NA	NA	NA
WP_000836066.1\|4488866_4489886_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
WP_001295394.1\|4489897_4491112_-	starvation-sensing protein RspA	Q6A202	Oenococcus_phage	1.4e-46	29.0
WP_000598292.1\|4491317_4491644_-	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_000705211.1\|4491778_4492120_+	DUF1283 family protein	NA	NA	NA	NA
WP_001138581.1\|4492154_4492715_+	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_001321287.1\|4492717_4493428_-	YnfC family lipoprotein	NA	NA	NA	NA
WP_001300836.1\|4493535_4493841_+	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_000041675.1\|4494039_4496466_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	7.7e-214	49.2
4501161:4501177	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP010174

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP010173

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP010172

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection