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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010228 Escherichia coli strain S3 chromosome, complete genome 5 crisprs cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG 0 8 10 0

Results visualization

1. NZ_CP010228
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010228_1 543280-543552 Unclear I-E
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010228_2 569255-569771 TypeI-E I-E
8 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010228_3 1678847-1678970 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010228_4 2338654-2338745 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010228_5 2618017-2618161 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010228_4 4.1|2338680|40|NZ_CP010228|CRISPRCasFinder 2338680-2338719 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
NZ_CP010228_3 3.1|1678890|38|NZ_CP010228|CRISPRCasFinder 1678890-1678927 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP010228_2 2.2|569345|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT 569345-569376 32 NC_028662 Mycobacterium phage Phlei, complete genome 44891-44922 5 0.844
NZ_CP010228_1 1.3|543431|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT 543431-543462 32 CP054922 Streptomyces sp. NA03103 plasmid unnamed2, complete sequence 68158-68189 6 0.812
NZ_CP010228_2 2.6|569589|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT 569589-569620 32 NZ_CP030355 Novosphingobium sp. P6W plasmid pP6W2, complete sequence 141173-141204 8 0.75
NZ_CP010228_1 1.2|543370|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT 543370-543401 32 MN692948 Marine virus AFVG_117M19, complete genome 51093-51124 9 0.719
NZ_CP010228_2 2.8|569711|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT 569711-569742 32 LT599585 Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid 32377-32408 9 0.719
NZ_CP010228_1 1.2|543370|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT 543370-543401 32 MN693666 Marine virus AFVG_250M158, complete genome 33511-33542 10 0.688
NZ_CP010228_2 2.1|569284|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT 569284-569315 32 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 903982-904013 10 0.688
NZ_CP010228_2 2.6|569589|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT 569589-569620 32 MF417892 Uncultured Caudovirales phage clone 2F_2, partial genome 39822-39853 10 0.688
NZ_CP010228_2 2.1|569284|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT 569284-569315 32 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 1467285-1467316 11 0.656

1. spacer 4.1|2338680|40|NZ_CP010228|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcgggtcattcttgaaattccccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
************************ ***************

2. spacer 3.1|1678890|38|NZ_CP010228|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 2.2|569345|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT matches to NC_028662 (Mycobacterium phage Phlei, complete genome) position: , mismatch: 5, identity: 0.844

acgaccaaatgatctacgcgtattgccacctc-	CRISPR spacer
acgaccaaacgctctacgcgta-tgcgagctct	Protospacer
*********.* ********** *** * *** 

4. spacer 1.3|543431|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT matches to CP054922 (Streptomyces sp. NA03103 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

--tttcagcagttcagcgtaacaccgacggtcac	CRISPR spacer
gccttccgc--ttcaccggaacaccgacggtcac	Protospacer
  .*** **  **** ** ***************

5. spacer 2.6|569589|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030355 (Novosphingobium sp. P6W plasmid pP6W2, complete sequence) position: , mismatch: 8, identity: 0.75

gaaactgaatcatcattgattacccgcgaaga	CRISPR spacer
aattcacgatcatctttgattatccgcgaaga	Protospacer
.*  *  .****** *******.*********

6. spacer 1.2|543370|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT matches to MN692948 (Marine virus AFVG_117M19, complete genome) position: , mismatch: 9, identity: 0.719

acgctgatttgatgggggctggtgcaggagat	CRISPR spacer
gtgaagctttgttgggggctggtgctggagga	Protospacer
..*  * **** ************* ****. 

7. spacer 2.8|569711|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 9, identity: 0.719

atcaggtaatcgagacacctgtcagcactctc	CRISPR spacer
ccaaggtaatcgagagacctgccagcaaagcc	Protospacer
 . ************ *****.*****   .*

8. spacer 1.2|543370|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT matches to MN693666 (Marine virus AFVG_250M158, complete genome) position: , mismatch: 10, identity: 0.688

acgctgatttgatgggggctggtgcaggagat	CRISPR spacer
tcgctgatttgatggcggcgggtgggtaggtc	Protospacer
 ************** *** **** . ..* .

9. spacer 2.1|569284|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

gtccatggcctgacgaagctcgtaatattttg	CRISPR spacer
gcgcatgtcctgacgaagctcgtgatgcaaga	Protospacer
*. **** ***************.**..   .

10. spacer 2.6|569589|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT matches to MF417892 (Uncultured Caudovirales phage clone 2F_2, partial genome) position: , mismatch: 10, identity: 0.688

gaaactgaatcatcattgattacccgcgaaga	CRISPR spacer
tgggctgcatcatcattgattacctgcaactg	Protospacer
 ...*** ****************.**.*  .

11. spacer 2.1|569284|32|NZ_CP010228|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

gtccatggcctgacgaagctcgtaatattttg	CRISPR spacer
ccgcatgtcctgacgaagctcgtgatgcaaga	Protospacer
 . **** ***************.**..   .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 586127 : 593267 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_2 669489 : 746765 79 Salmonella_phage(34.21%) tail,tRNA,integrase,capsid,portal,transposase,terminase attL 687250:687266|attR 750286:750302
DBSCAN-SWA_3 1199446 : 1208888 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_4 1252239 : 1260635 9 Enterobacteria_phage(33.33%) tRNA NA
DBSCAN-SWA_5 1752440 : 1795686 54 Enterobacteria_phage(28.57%) protease,tail,lysis,transposase NA
DBSCAN-SWA_6 2008303 : 2021783 17 Escherichia_phage(73.33%) tRNA,integrase attL 1998963:1998976|attR 2017929:2017942
DBSCAN-SWA_7 2525228 : 2534752 14 Salmonella_phage(90.0%) integrase attL 2519547:2519560|attR 2534827:2534840
DBSCAN-SWA_8 2842890 : 2855019 22 Enterobacteria_phage(70.59%) tail,lysis NA
DBSCAN-SWA_9 3086595 : 3155060 57 Shigella_phage(31.82%) tail,plate,integrase,transposase,holin attL 3119427:3119443|attR 3152506:3152522
DBSCAN-SWA_10 3461234 : 3469226 14 Enterobacteria_phage(46.15%) tail,holin,lysis NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage