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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP010178 Escherichia coli strain H15 chromosome, complete genome 5 crisprs cas3,c2c9_V-U4,DEDDh,DinG,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e 0 21 6 0
NZ_CP010179 Escherichia coli strain H15 plasmid A, complete sequence 0 crisprs csa3 0 0 2 0

Results visualization

1. NZ_CP010178
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010178_1 293045-293141 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010178_2 535963-536102 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010178_3 833974-834065 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010178_4 2683669-2684307 TypeI-E I-E
10 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP010178_5 2710007-2710828 Unclear I-E
13 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP010178_3 3.1|834000|40|NZ_CP010178|CRISPRCasFinder 834000-834039 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 1 0.975
NZ_CP010178_4 4.3|2683820|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2683820-2683851 32 MK356558 Salmonella sp. strain Sa1423 plasmid pSa1423-160k, complete sequence 30604-30635 4 0.875
NZ_CP010178_4 4.3|2683820|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2683820-2683851 32 MK356557 Salmonella sp. strain Sa1423 plasmid pSa1423-90k, complete sequence 58819-58850 5 0.844
NZ_CP010178_5 5.10|2710585|32|NZ_CP010178|CRISPRCasFinder,CRT 2710585-2710616 32 NC_047816 Ralstonia phage RS-PI-1, complete genome 38291-38322 6 0.812
NZ_CP010178_5 5.1|2710036|32|NZ_CP010178|CRISPRCasFinder,CRT 2710036-2710067 32 KR080197 Mycobacterium phage FlagStaff, complete genome 15476-15507 7 0.781
NZ_CP010178_5 5.5|2710280|32|NZ_CP010178|CRISPRCasFinder,CRT 2710280-2710311 32 NZ_CP010860 Marinovum algicola DG 898 plasmid pMaD5, complete sequence 101414-101445 7 0.781
NZ_CP010178_5 5.7|2710402|32|NZ_CP010178|CRISPRCasFinder,CRT 2710402-2710433 32 NC_015727 Cupriavidus necator N-1 plasmid pBB1, complete sequence 1371679-1371710 7 0.781
NZ_CP010178_5 5.13|2710768|32|NZ_CP010178|CRISPRCasFinder,CRT 2710768-2710799 32 MN045229 Escherichia phage Mangalitsa, complete genome 16712-16743 7 0.781
NZ_CP010178_4 4.8|2684125|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2684125-2684156 32 LN610585 Pseudomonas phage vB_PaeS_PAO1_Ab20, complete genome 18296-18327 8 0.75
NZ_CP010178_4 4.8|2684125|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2684125-2684156 32 KU356689 Pseudomonas phage ZC01, complete genome 18147-18178 8 0.75
NZ_CP010178_4 4.8|2684125|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2684125-2684156 32 NC_042115 Pseudomonas phage vB_PaeS_PAO1_Ab19, complete genome 18298-18329 8 0.75
NZ_CP010178_4 4.8|2684125|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2684125-2684156 32 NC_026594 Pseudomonas phage vB_PaeS_PAO1_Ab18, complete genome 18307-18338 8 0.75
NZ_CP010178_5 5.1|2710036|32|NZ_CP010178|CRISPRCasFinder,CRT 2710036-2710067 32 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 15418-15449 8 0.75
NZ_CP010178_5 5.5|2710280|32|NZ_CP010178|CRISPRCasFinder,CRT 2710280-2710311 32 NZ_CP010410 Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence 347166-347197 8 0.75
NZ_CP010178_5 5.10|2710585|32|NZ_CP010178|CRISPRCasFinder,CRT 2710585-2710616 32 NZ_CP035502 Sphingosinicella sp. BN140058 plasmid p1, complete sequence 68506-68537 8 0.75
NZ_CP010178_5 5.13|2710768|32|NZ_CP010178|CRISPRCasFinder,CRT 2710768-2710799 32 MH823906 Citrobacter phage Maroon, complete genome 88358-88389 8 0.75
NZ_CP010178_5 5.13|2710768|32|NZ_CP010178|CRISPRCasFinder,CRT 2710768-2710799 32 KT381880 Citrobacter phage Margaery, complete genome 87990-88021 8 0.75
NZ_CP010178_5 5.20|2710401|34|NZ_CP010178|PILER-CR 2710401-2710434 34 NC_015727 Cupriavidus necator N-1 plasmid pBB1, complete sequence 1371679-1371712 8 0.765
NZ_CP010178_4 4.1|2683698|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2683698-2683729 32 NZ_CP026601 Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence 97056-97087 9 0.719
NZ_CP010178_4 4.4|2683881|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2683881-2683912 32 AP018320 Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome 85941-85972 9 0.719
NZ_CP010178_4 4.5|2683942|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2683942-2683973 32 NC_017311 Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence 33125-33156 9 0.719
NZ_CP010178_4 4.5|2683942|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2683942-2683973 32 NC_005863 Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence 38568-38599 9 0.719
NZ_CP010178_4 4.5|2683942|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2683942-2683973 32 NC_008741 Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence 165123-165154 9 0.719
NZ_CP010178_4 4.6|2684003|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2684003-2684034 32 NZ_CP025805 Sulfitobacter sp. SK012 plasmid unnamed1, complete sequence 187229-187260 9 0.719
NZ_CP010178_5 5.1|2710036|32|NZ_CP010178|CRISPRCasFinder,CRT 2710036-2710067 32 NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 139210-139241 9 0.719
NZ_CP010178_5 5.3|2710158|32|NZ_CP010178|CRISPRCasFinder,CRT 2710158-2710189 32 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 224876-224907 9 0.719
NZ_CP010178_5 5.5|2710280|32|NZ_CP010178|CRISPRCasFinder,CRT 2710280-2710311 32 NZ_CP029777 Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence 89227-89258 9 0.719
NZ_CP010178_5 5.5|2710280|32|NZ_CP010178|CRISPRCasFinder,CRT 2710280-2710311 32 NZ_CP021083 Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence 361520-361551 9 0.719
NZ_CP010178_5 5.12|2710707|32|NZ_CP010178|CRISPRCasFinder,CRT 2710707-2710738 32 NZ_CP032297 Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence 235822-235853 9 0.719
NZ_CP010178_5 5.12|2710707|32|NZ_CP010178|CRISPRCasFinder,CRT 2710707-2710738 32 NC_017060 Rahnella aquatilis HX2 plasmid PRA1, complete sequence 418858-418889 9 0.719
NZ_CP010178_5 5.12|2710707|32|NZ_CP010178|CRISPRCasFinder,CRT 2710707-2710738 32 NC_015062 Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence 421705-421736 9 0.719
NZ_CP010178_5 5.12|2710707|32|NZ_CP010178|CRISPRCasFinder,CRT 2710707-2710738 32 NZ_CP034837 Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence 359128-359159 9 0.719
NZ_CP010178_5 5.13|2710768|32|NZ_CP010178|CRISPRCasFinder,CRT 2710768-2710799 32 NC_022602 Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR47, complete sequence 4506-4537 9 0.719
NZ_CP010178_5 5.18|2710279|34|NZ_CP010178|PILER-CR 2710279-2710312 34 NZ_CP010860 Marinovum algicola DG 898 plasmid pMaD5, complete sequence 101414-101447 9 0.735
NZ_CP010178_5 5.26|2710767|34|NZ_CP010178|PILER-CR 2710767-2710800 34 MN045229 Escherichia phage Mangalitsa, complete genome 16712-16745 9 0.735
NZ_CP010178_5 5.1|2710036|32|NZ_CP010178|CRISPRCasFinder,CRT 2710036-2710067 32 NZ_CP012383 Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence 14130-14161 10 0.688
NZ_CP010178_5 5.5|2710280|32|NZ_CP010178|CRISPRCasFinder,CRT 2710280-2710311 32 NZ_CP019037 Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence 354311-354342 10 0.688
NZ_CP010178_5 5.10|2710585|32|NZ_CP010178|CRISPRCasFinder,CRT 2710585-2710616 32 NZ_CP010421 Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence 64611-64642 10 0.688
NZ_CP010178_5 5.11|2710646|32|NZ_CP010178|CRISPRCasFinder,CRT 2710646-2710677 32 NZ_CP009155 Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence 9301-9332 10 0.688
NZ_CP010178_5 5.14|2710035|34|NZ_CP010178|PILER-CR 2710035-2710068 34 NZ_CP014600 Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence 15418-15451 10 0.706
NZ_CP010178_4 4.9|2684186|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT 2684186-2684217 32 NC_015708 Pseudoalteromonas sp. SANK 73390 plasmid pTML1 carrying thiomarinol biosynthesis cluster 33648-33679 11 0.656
NZ_CP010178_5 5.14|2710035|34|NZ_CP010178|PILER-CR 2710035-2710068 34 NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 139208-139241 11 0.676
NZ_CP010178_5 5.16|2710157|34|NZ_CP010178|PILER-CR 2710157-2710190 34 NZ_CP030074 Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence 224874-224907 11 0.676

1. spacer 3.1|834000|40|NZ_CP010178|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

acagcacagcggggggaatttcaagaatgacccgcagcgc	CRISPR spacer
acagcacagcgggggtaatttcaagaatgacccgcagcgc	Protospacer
*************** ************************

2. spacer 4.3|2683820|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to MK356558 (Salmonella sp. strain Sa1423 plasmid pSa1423-160k, complete sequence) position: , mismatch: 4, identity: 0.875

gcagactataacgagggtcgcacgcggatcat--	CRISPR spacer
gccgactataacgaaggtcgcacgc--atcataa	Protospacer
** ***********.**********  *****  

3. spacer 4.3|2683820|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to MK356557 (Salmonella sp. strain Sa1423 plasmid pSa1423-90k, complete sequence) position: , mismatch: 5, identity: 0.844

gcagactataacgagggtcgcacgcggatcat-	CRISPR spacer
gccgactataacgaaggtcgcacgcata-cata	Protospacer
** ***********.**********. * *** 

4. spacer 5.10|2710585|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NC_047816 (Ralstonia phage RS-PI-1, complete genome) position: , mismatch: 6, identity: 0.812

cgccagcagcacagcaacagcgag--gtaaccaa	CRISPR spacer
ctccagcagcacagcatcggcgaggagtaccc--	Protospacer
* ************** *.*****  *** **  

5. spacer 5.1|2710036|32|NZ_CP010178|CRISPRCasFinder,CRT matches to KR080197 (Mycobacterium phage FlagStaff, complete genome) position: , mismatch: 7, identity: 0.781

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
aacccggcgaacggcatcgcggcgccggcgtc	Protospacer
*** . * .****** ******** *******

6. spacer 5.5|2710280|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP010860 (Marinovum algicola DG 898 plasmid pMaD5, complete sequence) position: , mismatch: 7, identity: 0.781

atcaacatgcagcgcgaacggctg---cccctcgc	CRISPR spacer
atccacatgcagctcgaacggctgaaatcgct---	Protospacer
*** ********* **********   .* **   

7. spacer 5.7|2710402|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 7, identity: 0.781

gctacatggagacgcatcatgacgtacaaaaa	CRISPR spacer
acagccaggagactcatcatgacgtacgaaaa	Protospacer
.* .*  ****** *************.****

8. spacer 5.13|2710768|32|NZ_CP010178|CRISPRCasFinder,CRT matches to MN045229 (Escherichia phage Mangalitsa, complete genome) position: , mismatch: 7, identity: 0.781

ctttcaatatagtcagaaaagtcttttggcaa	CRISPR spacer
tactgaatatcgtcagcaaagtcttttggcag	Protospacer
. .* ***** ***** **************.

9. spacer 4.8|2684125|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to LN610585 (Pseudomonas phage vB_PaeS_PAO1_Ab20, complete genome) position: , mismatch: 8, identity: 0.75

gagcgcgtgccgtgcctgggttcatatgatgg	CRISPR spacer
gggctgcacccgcgcctgggttcagatgatgg	Protospacer
*.**     ***.*********** *******

10. spacer 4.8|2684125|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to KU356689 (Pseudomonas phage ZC01, complete genome) position: , mismatch: 8, identity: 0.75

gagcgcgtgccgtgcctgggttcatatgatgg	CRISPR spacer
gggctgcacccgcgcctgggttcagatgatgg	Protospacer
*.**     ***.*********** *******

11. spacer 4.8|2684125|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to NC_042115 (Pseudomonas phage vB_PaeS_PAO1_Ab19, complete genome) position: , mismatch: 8, identity: 0.75

gagcgcgtgccgtgcctgggttcatatgatgg	CRISPR spacer
gggctgcacccgcgcctgggttcagatgatgg	Protospacer
*.**     ***.*********** *******

12. spacer 4.8|2684125|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to NC_026594 (Pseudomonas phage vB_PaeS_PAO1_Ab18, complete genome) position: , mismatch: 8, identity: 0.75

gagcgcgtgccgtgcctgggttcatatgatgg	CRISPR spacer
gggctgcacccgcgcctgggttcagatgatgg	Protospacer
*.**     ***.*********** *******

13. spacer 5.1|2710036|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggctgtggaaagggctgcgcggcggcggcgac	Protospacer
..*  .***** **** ************* *

14. spacer 5.5|2710280|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP010410 (Xanthomonas sacchari strain R1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atcaaca--tgcagcgcgaacggctgcccctcgc	CRISPR spacer
--cagcgcctgcagcgcgaacggctgcgactcca	Protospacer
  **.*.  ******************  ***  

15. spacer 5.10|2710585|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP035502 (Sphingosinicella sp. BN140058 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

cgccagcagcacagcaacagcgaggtaaccaa	CRISPR spacer
ggtcagcagcacagcaagaacgaggtcgtcga	Protospacer
 *.************** *.****** ..*.*

16. spacer 5.13|2710768|32|NZ_CP010178|CRISPRCasFinder,CRT matches to MH823906 (Citrobacter phage Maroon, complete genome) position: , mismatch: 8, identity: 0.75

ctttcaatatagtcagaaaagtcttttggcaa--	CRISPR spacer
gtttaaatttagtcagaaaagtc--tgaacaacc	Protospacer
 *** *** **************  * ..***  

17. spacer 5.13|2710768|32|NZ_CP010178|CRISPRCasFinder,CRT matches to KT381880 (Citrobacter phage Margaery, complete genome) position: , mismatch: 8, identity: 0.75

ctttcaatatagtcagaaaagtcttttggcaa--	CRISPR spacer
gtttaaatttagtcagaaaagtc--tgaacaacc	Protospacer
 *** *** **************  * ..***  

18. spacer 5.20|2710401|34|NZ_CP010178|PILER-CR matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 8, identity: 0.765

acgctacatggagacgcatcatgacgtacaaaaa	CRISPR spacer
tcacagccaggagactcatcatgacgtacgaaaa	Protospacer
 *.* .*  ****** *************.****

19. spacer 4.1|2683698|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026601 (Clostridiaceae bacterium 14S0207 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tcacgcgctgttacccagtccctttttttcag	CRISPR spacer
tcttataatgttatccagtacctttttttcat	Protospacer
** .... *****.***** *********** 

20. spacer 4.4|2683881|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to AP018320 (Nostoc sp. HK-01 plasmid plasmid2 DNA, complete genome) position: , mismatch: 9, identity: 0.719

---taccaaaccggaatctttccatataacggcgg	CRISPR spacer
ggattttga---ggaagctttctatataacggcgg	Protospacer
   * ...*   **** *****.************

21. spacer 4.5|2683942|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to NC_017311 (Desulfovibrio vulgaris RCH1 plasmid pDEVAL01, complete sequence) position: , mismatch: 9, identity: 0.719

ttactcgccggggaatacgccccgcgccacgc	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgtac	Protospacer
*   .******** **********.***...*

22. spacer 4.5|2683942|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to NC_005863 (Desulfovibrio vulgaris str. Hildenborough plasmid pDV, complete sequence) position: , mismatch: 9, identity: 0.719

ttactcgccggggaatacgccccgcgccacgc	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgtac	Protospacer
*   .******** **********.***...*

23. spacer 4.5|2683942|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to NC_008741 (Desulfovibrio vulgaris DP4 plasmid pDVUL01, complete sequence) position: , mismatch: 9, identity: 0.719

ttactcgccggggaatacgccccgcgccacgc	CRISPR spacer
tgcaccgccggggcatacgccccgtgccgtac	Protospacer
*   .******** **********.***...*

24. spacer 4.6|2684003|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025805 (Sulfitobacter sp. SK012 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

cttactcattcagaacgctgcatgaaatatgc	CRISPR spacer
caatgtcatgcaaaacgctgcatgaaataaaa	Protospacer
*    **** **.**************** . 

25. spacer 5.1|2710036|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 9, identity: 0.719

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
cccgggaaaaacgggttcgcggcggcggcttc	Protospacer
  *.  ..****** ************** **

26. spacer 5.3|2710158|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ggcatagccaggctgatccggcgacggcctta	CRISPR spacer
gcagcagaccggctgatccggcgacggccccg	Protospacer
*  ..** * *******************...

27. spacer 5.5|2710280|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP029777 (Deinococcus actinosclerus strain Deinococcus actinosclerus SJTR plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

atcaacatgcagcgcgaacggctgcccctcgc	CRISPR spacer
caggagttccagcgcgaacggcagcgcctcgc	Protospacer
   .*  * ************* ** ******

28. spacer 5.5|2710280|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP021083 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI2, complete sequence) position: , mismatch: 9, identity: 0.719

atcaacatgcagcgcgaacggctgcccctcgc	CRISPR spacer
gccttcgagcagcgccagcggctgcccctcga	Protospacer
..*  *. ******* *.************* 

29. spacer 5.12|2710707|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 9, identity: 0.719

gatgcggcagcggcggcgggaagttatcgcgg	CRISPR spacer
gcaggatcagcagcggcgggaatttatcgcca	Protospacer
*  * . ****.********** ******* .

30. spacer 5.12|2710707|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NC_017060 (Rahnella aquatilis HX2 plasmid PRA1, complete sequence) position: , mismatch: 9, identity: 0.719

gatgcggcagcggcggcgggaagttatcgcgg	CRISPR spacer
gcaggatcagcagcggcgggaatttatcgcca	Protospacer
*  * . ****.********** ******* .

31. spacer 5.12|2710707|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NC_015062 (Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequence) position: , mismatch: 9, identity: 0.719

gatgcggcagcggcggcgggaagttatcgcgg	CRISPR spacer
gcaggatcagcagcggcgggaatttatcgcca	Protospacer
*  * . ****.********** ******* .

32. spacer 5.12|2710707|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 9, identity: 0.719

gatgcggcagcggcggcgggaagttatcgcgg	CRISPR spacer
gcaggatcagcagcggcgggaatttatcgcca	Protospacer
*  * . ****.********** ******* .

33. spacer 5.13|2710768|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NC_022602 (Carnobacterium inhibens subsp. gilichinskyi plasmid pWNCR47, complete sequence) position: , mismatch: 9, identity: 0.719

ctttcaatatagtcagaaaagtcttttggcaa	CRISPR spacer
ctttcaatatagtcaggaaattcctcccaaga	Protospacer
****************.*** **.*.. . .*

34. spacer 5.18|2710279|34|NZ_CP010178|PILER-CR matches to NZ_CP010860 (Marinovum algicola DG 898 plasmid pMaD5, complete sequence) position: , mismatch: 9, identity: 0.735

acatcaacatgcagcgcgaacggctg---cccctcgc	CRISPR spacer
cgatccacatgcagctcgaacggctgaaatcgct---	Protospacer
  *** ********* **********   .* **   

35. spacer 5.26|2710767|34|NZ_CP010178|PILER-CR matches to MN045229 (Escherichia phage Mangalitsa, complete genome) position: , mismatch: 9, identity: 0.735

acctttcaatatagtcagaaaagtcttttggcaa	CRISPR spacer
gatactgaatatcgtcagcaaagtcttttggcag	Protospacer
. . .* ***** ***** **************.

36. spacer 5.1|2710036|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP012383 (Streptomyces ambofaciens ATCC 23877 plasmid pSAM1, complete sequence) position: , mismatch: 10, identity: 0.688

aacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
gaggacggaagcggcttcgccgcggcgggcaa	Protospacer
.* . *****.********* *******    

37. spacer 5.5|2710280|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.688

atcaacatgcagcgcgaacggctgcccctcgc	CRISPR spacer
ggtttcattcatcgcgaacggctgccccggga	Protospacer
. .  *** ** ****************  * 

38. spacer 5.10|2710585|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 10, identity: 0.688

cgccagcagcacagcaacagcgaggtaaccaa	CRISPR spacer
cgccagcagcacagcaccagagatgcgcaggc	Protospacer
**************** *** ** *..   . 

39. spacer 5.11|2710646|32|NZ_CP010178|CRISPRCasFinder,CRT matches to NZ_CP009155 (Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

gtaaattgcgacgtcctgcgccagtaattcaa	CRISPR spacer
atgtgcgacgacgtcgtgcgccaggaattcat	Protospacer
.*. .. .******* ******** ****** 

40. spacer 5.14|2710035|34|NZ_CP010178|PILER-CR matches to NZ_CP014600 (Yangia sp. CCB-MM3 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

tcaacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggggctgtggaaagggctgcgcggcggcggcgac	Protospacer
  ..*  .***** **** ************* *

41. spacer 4.9|2684186|32|NZ_CP010178|PILER-CR,CRISPRCasFinder,CRT matches to NC_015708 (Pseudoalteromonas sp. SANK 73390 plasmid pTML1 carrying thiomarinol biosynthesis cluster) position: , mismatch: 11, identity: 0.656

gtggttgtttaggcgggatttgttgcgtaagt	CRISPR spacer
cgaattgcttaggcggcatttgttgcgattac	Protospacer
  ..***.******** **********   ..

42. spacer 5.14|2710035|34|NZ_CP010178|PILER-CR matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 11, identity: 0.676

tcaacatcggaaacggcttcgcggcggcggcgtc	CRISPR spacer
ggcccgggaaaaacgggttcgcggcggcggcttc	Protospacer
    *.  ..****** ************** **

43. spacer 5.16|2710157|34|NZ_CP010178|PILER-CR matches to NZ_CP030074 (Streptomyces sp. ZFG47 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

tcggcatagccaggctgatccggcgacggcctta	CRISPR spacer
gagcagcagaccggctgatccggcgacggccccg	Protospacer
  *  ..** * *******************...

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 587854 : 653077 73 Salmonella_phage(77.78%) capsid,transposase,tail,terminase,plate,integrase,head,portal,lysis attL 579241:579257|attR 621677:621693
DBSCAN-SWA_2 1362979 : 1470941 116 Enterobacteria_phage(30.51%) capsid,tail,terminase,integrase,head,portal,lysis attL 1442253:1442268|attR 1475637:1475652
DBSCAN-SWA_3 1980228 : 2044322 74 Escherichia_phage(37.78%) capsid,portal,tail,plate,terminase,holin,integrase,head,tRNA,lysis attL 1969372:1969389|attR 2045055:2045072
DBSCAN-SWA_4 2056887 : 2066329 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_5 2660173 : 2667313 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_6 3658912 : 3669176 11 Enterobacteria_phage(88.89%) integrase attL 3658730:3658752|attR 3669653:3669675
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP010179
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 4453 : 71063 56 Escherichia_phage(54.29%) bacteriocin,transposase,holin NA
DBSCAN-SWA_2 91708 : 116132 22 Escherichia_phage(66.67%) integrase,transposase attL 88950:88964|attR 108559:108573
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage