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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP018425 Klebsiella pneumoniae strain MNCRE69 plasmid pMNCRE69_1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP018423 Klebsiella pneumoniae strain MNCRE69 plasmid pMNCRE69_2, complete sequence 0 crisprs NA 0 0 4 0
NZ_CP018427 Klebsiella pneumoniae strain MNCRE69 chromosome, complete genome 3 crisprs cas3,DEDDh,WYL,RT,DinG,csa3 0 1 14 0
NZ_CP018426 Klebsiella pneumoniae strain MNCRE69 plasmid pMNCRE69_3, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP018424 Klebsiella pneumoniae strain MNCRE69 plasmid pMNCRE69_4, complete sequence 0 crisprs csa3,RT,cas3 0 0 14 0

Results visualization

1. NZ_CP018424
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 42327 38 Escherichia_phage(37.5%) integrase,protease,transposase attL 5234:5248|attR 22575:22589
DBSCAN-SWA_2 46450 : 50757 5 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_3 54214 : 54928 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_4 59443 : 61521 2 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_5 66614 : 73871 5 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_6 77244 : 85748 5 Bacillus_phage(50.0%) transposase NA
DBSCAN-SWA_7 92383 : 108270 11 Macacine_betaherpesvirus(33.33%) integrase attL 80806:80822|attR 111868:111884
DBSCAN-SWA_8 111407 : 115692 4 Thalassomonas_phage(33.33%) NA NA
DBSCAN-SWA_9 121112 : 124715 9 Klebsiella_phage(25.0%) NA NA
DBSCAN-SWA_10 158868 : 159594 1 Xanthomonas_phage(100.0%) NA NA
DBSCAN-SWA_11 164773 : 165253 1 Wolbachia_phage(100.0%) NA NA
DBSCAN-SWA_12 177274 : 185135 6 Herpes_simplex_virus(25.0%) NA NA
DBSCAN-SWA_13 198610 : 201299 2 Catovirus(50.0%) NA NA
DBSCAN-SWA_14 205121 : 208144 4 Stx2-converting_phage(66.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP018423
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 5703 2 Escherichia_phage(50.0%) transposase NA
DBSCAN-SWA_2 10867 : 15038 3 Streptococcus_phage(33.33%) NA NA
DBSCAN-SWA_3 33668 : 34184 1 Tupanvirus(100.0%) NA NA
DBSCAN-SWA_4 38784 : 44819 4 Burkholderia_phage(25.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP018427
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018427_1 813904-813989 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018427_2 1297875-1297970 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP018427_3 1586932-1587009 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP018427_2 2.1|1297905|36|NZ_CP018427|CRISPRCasFinder 1297905-1297940 36 MK448233 Klebsiella phage ST11-VIM1phi8.1, complete genome 8447-8482 0 1.0
NZ_CP018427_2 2.1|1297905|36|NZ_CP018427|CRISPRCasFinder 1297905-1297940 36 MK448235 Klebsiella phage ST512-KPC3phi13.1, complete genome 8447-8482 0 1.0
NZ_CP018427_2 2.1|1297905|36|NZ_CP018427|CRISPRCasFinder 1297905-1297940 36 MK448231 Klebsiella phage ST101-KPC2phi6.1, complete genome 11383-11418 0 1.0

1. spacer 2.1|1297905|36|NZ_CP018427|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

2. spacer 2.1|1297905|36|NZ_CP018427|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

3. spacer 2.1|1297905|36|NZ_CP018427|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

acgcaaacccagtaaccacgctgcgtaccggcgagg	CRISPR spacer
acgcaaacccagtaaccacgctgcgtaccggcgagg	Protospacer
************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 591569 : 597394 8 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_2 1065640 : 1077294 15 Enterobacteria_phage(70.0%) integrase attL 1053774:1053788|attR 1076831:1076845
DBSCAN-SWA_3 1286849 : 1332124 66 Escherichia_phage(26.42%) tRNA,lysis,integrase,head attL 1289732:1289778|attR 1338866:1338912
DBSCAN-SWA_4 1680505 : 1719751 49 Salmonella_phage(82.93%) lysis,head,tail,integrase,capsid,portal,terminase,plate attL 1680413:1680431|attR 1719823:1719841
DBSCAN-SWA_5 1754167 : 1763631 8 Dickeya_phage(16.67%) tRNA,protease NA
DBSCAN-SWA_6 2151659 : 2209475 71 Enterobacteria_phage(22.22%) tail,integrase,transposase,terminase,holin attL 2143637:2143652|attR 2166476:2166491
DBSCAN-SWA_7 2242408 : 2285456 63 Klebsiella_phage(33.33%) terminase,transposase,integrase attL 2240489:2240503|attR 2249429:2249443
DBSCAN-SWA_8 2510876 : 2520290 9 Escherichia_phage(87.5%) NA NA
DBSCAN-SWA_9 3143292 : 3186391 42 Microcystis_virus(25.0%) tRNA,transposase,plate NA
DBSCAN-SWA_10 3598850 : 3606475 7 Escherichia_phage(28.57%) NA NA
DBSCAN-SWA_11 3643042 : 3649949 6 Bacillus_phage(33.33%) tRNA NA
DBSCAN-SWA_12 3949725 : 4029494 86 Salmonella_phage(32.2%) tail,integrase,tRNA,protease,transposase,terminase,holin attL 3955367:3955384|attR 4028483:4028500
DBSCAN-SWA_13 4100844 : 4183564 90 Salmonella_phage(69.23%) lysis,head,tail,integrase,coat,tRNA,capsid,portal,transposase,terminase,plate attL 4145548:4145594|attR 4185225:4185271
DBSCAN-SWA_14 4904094 : 4952937 56 uncultured_Caudovirales_phage(68.75%) head,tail,tRNA,protease,portal,capsid,terminase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage