CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP018353	Klebsiella pneumoniae strain CAV1453 plasmid pCAV1453-14, complete sequence	0 crisprs	NA	0
NZ_CP018355	Klebsiella pneumoniae strain CAV1453 plasmid pCAV1453-208, complete sequence	0 crisprs	RT,cas3,csa3	10
NZ_CP018356	Klebsiella pneumoniae strain CAV1453 chromosome, complete genome	2 crisprs	DEDDh,WYL,DinG,RT,cas3,csa3	12
NZ_CP018354	Klebsiella pneumoniae strain CAV1453 plasmid pCAV1453-46, complete sequence	0 crisprs	RT	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 12606

uncultured_Caudovirales_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004118344.1\|310_1240_-	copper resistance inner membrane protein PcoD	NA	NA	NA	NA
WP_000025662.1\|1244_1625_-	copper resistance system metallochaperone PcoC	NA	NA	NA	NA
WP_001378118.1\|1664_2555_-	copper resistance outer membrane transporter PcoB	NA	NA	NA	NA
WP_004152083.1\|2560_4378_-	multicopper oxidase PcoA	NA	NA	NA	NA
WP_001023257.1\|4611_5061_+	copper resistance protein	NA	NA	NA	NA
WP_004118669.1\|5349_6087_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
WP_000843497.1\|6120_6318_-	DUF2933 domain-containing protein	NA	NA	NA	NA
WP_004098955.1\|6358_8806_-	Ag(+)-translocating P-type ATPase SilP	A0A218MNH6	uncultured_virus	7.6e-84	35.8
WP_000758228.1\|8932_9373_-	hypothetical protein	NA	NA	NA	NA
WP_004098958.1\|9459_12606_-	Cu(+)/Ag(+) efflux RND transporter permease subunit SilA	S5VTK5	Leptospira_phage	4.0e-61	22.5

DBSCAN-SWA_2

15979 : 24483

Bacillus_phage(50.0%)

holin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001572351.1\|15979_16660_+	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.1e-31	35.6
WP_003032875.1\|16652_18128_+	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.0e-27	30.1
WP_004178091.1\|18378_18810_+	silver-binding protein SilE	NA	NA	NA	NA
WP_085955172.1\|20238_21445_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.7e-100	63.2
WP_004178088.1\|22485_24483_+\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9

DBSCAN-SWA_3

29791 : 47004

Macacine_betaherpesvirus(30.0%)

transposase,integrase

attL 19541:19557|attR 50602:50618

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
19541:19557	attL	NA	NA	NA	NA
WP_011977741.1\|29791_30760_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.5e-184	98.1
WP_071527918.1\|30779_31091_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004152065.1\|31117_32065_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
WP_001515717.1\|33208_33949_+\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
WP_004152063.1\|34665_35676_-	replication initiation protein	J9Q7H0	Salmonella_phage	8.8e-87	55.9
WP_000523813.1\|36427_37594_+	plasmid-partitioning protein SopA	A0A2I6B2X3	Macacine_betaherpesvirus	1.4e-224	97.7
WP_004152062.1\|37593_38565_+	ParB/RepB/Spo0J family plasmid partition protein	I3WF22	Macacine_betaherpesvirus	4.1e-150	86.6
WP_004152715.1\|41516_42788_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	5.6e-155	63.7
WP_004178083.1\|42787_43213_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.3e-31	49.6
WP_004178082.1\|43615_45103_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004152753.1\|45336_45567_+	hypothetical protein	NA	NA	NA	NA
WP_004118478.1\|46087_46513_+	antirestriction protein	NA	NA	NA	NA
WP_004152754.1\|46749_47004_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.2e-11	50.0
50602:50618	attR	NA	NA	NA	NA

DBSCAN-SWA_4

50141 : 54426

Thalassomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152645.1\|50141_50705_+	methyltransferase	A8HNV9	Thalassomonas_phage	1.3e-18	34.1
WP_004152644.1\|51480_52023_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	6.0e-50	76.7
WP_004152643.1\|52071_52320_+	DUF905 domain-containing protein	NA	NA	NA	NA
WP_004178066.1\|52389_54426_+	ParB/RepB/Spo0J family partition protein	G8DH78	Emiliania_huxleyi_virus	9.0e-22	26.0

DBSCAN-SWA_5

59846 : 63449

Klebsiella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152717.1\|59846_60203_+	hypothetical protein	A0A248SL90	Klebsiella_phage	2.6e-25	58.1
WP_004152718.1\|60263_60476_+	hypothetical protein	NA	NA	NA	NA
WP_004152719.1\|60486_60711_+	hypothetical protein	NA	NA	NA	NA
WP_004152720.1\|60791_61112_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	6.8e-09	39.5
WP_004152721.1\|61101_61380_+	helix-turn-helix transcriptional regulator	O64356	Escherichia_phage	2.5e-07	39.4
WP_004152722.1\|61380_61794_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004178064.1\|62627_63449_+	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	2.6e-44	40.4

DBSCAN-SWA_6

97602 : 162176

Stx2-converting_phage(15.79%)

transposase,bacteriocin,integrase

attL 105608:105624|attR 164626:164642

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152303.1\|97602_98328_+	type-F conjugative transfer system pilin acetylase TraX	A0A1D6ZIU7	Xanthomonas_phage	5.5e-06	29.4
WP_004178053.1\|98485_99082_+	fertility inhibition protein FinO	NA	NA	NA	NA
WP_004152301.1\|99101_99449_+	hypothetical protein	NA	NA	NA	NA
WP_004152300.1\|99663_100209_-	hypothetical protein	NA	NA	NA	NA
WP_004178051.1\|100565_102887_+\|bacteriocin	klebicin B-related nuclease bacteriocin	NA	NA	NA	NA
WP_004152296.1\|102888_103167_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_009485932.1\|103507_103987_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	9.8e-20	35.2
WP_004199332.1\|104307_104586_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_004171457.1\|104802_104880_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_004152292.1\|104872_105730_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
105608:105624	attL	NA	NA	NA	NA
WP_000093087.1\|107176_109372_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_004152291.1\|109368_110685_-	ATP-binding protein	NA	NA	NA	NA
WP_004152290.1\|110688_112998_-	TerB N-terminal domain-containing protein	NA	NA	NA	NA
WP_003846917.1\|114703_115957_-	lactose permease	NA	NA	NA	NA
WP_004152287.1\|116008_119083_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
WP_004152286.1\|119204_120287_-	DNA-binding transcriptional repressor LacI	C6ZCU4	Enterobacteria_phage	6.8e-186	96.4
WP_004152284.1\|120747_121758_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_165765869.1\|122091_122379_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004118251.1\|122709_123003_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
WP_004152282.1\|123101_123869_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_004152281.1\|123869_124826_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA
WP_004118243.1\|124822_125821_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_004118241.1\|125817_126720_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_004152280.1\|126764_129089_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_004118237.1\|129174_130128_-	fec operon regulator FecR	NA	NA	NA	NA
WP_004118235.1\|130124_130646_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_161989521.1\|131607_131820_-	hypothetical protein	NA	NA	NA	NA
WP_004118231.1\|131748_131916_+\|integrase	integrase	NA	NA	NA	NA
WP_004118840.1\|132200_133328_+	transporter substrate-binding protein	NA	NA	NA	NA
WP_004118229.1\|133324_133918_+	ANTAR domain-containing protein	NA	NA	NA	NA
WP_004152279.1\|133914_134763_+	ABC transporter permease	NA	NA	NA	NA
WP_004118227.1\|134762_135683_+	ABC transporter permease	NA	NA	NA	NA
WP_004152278.1\|135695_137300_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004118225.1\|137344_138292_+	acetamidase/formamidase family protein	A0A1V0S8X7	Catovirus	9.6e-11	22.7
WP_004118832.1\|138299_140033_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-15	29.6
WP_004152557.1\|143855_144203_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.0e-59	95.7
WP_020956879.1\|144199_144586_-\|transposase	transposase	B6DZU5	Stx2-converting_phage	1.1e-58	90.7
WP_004118217.1\|145133_145769_-	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_000005560.1\|145765_146878_-	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	1.5e-47	33.8
WP_004118216.1\|146870_148259_-	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	6.3e-51	29.0
WP_176716597.1\|148258_148498_-	His-Xaa-Ser system protein HxsD	NA	NA	NA	NA
WP_000412211.1\|149466_150126_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_000656305.1\|150326_150704_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001138064.1\|150770_153737_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_000147567.1\|153739_154300_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_000454193.1\|154425_154776_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845048.1\|154978_155992_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001083725.1\|156136_156634_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|156745_157036_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|157041_157833_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|157996_158344_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|158337_159177_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376616.1\|159304_159508_+	hypothetical protein	NA	NA	NA	NA
WP_000184001.1\|159663_160869_+	chromate efflux transporter	NA	NA	NA	NA
WP_000130000.1\|160879_161185_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|161411_162176_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
164626:164642	attR	NA	NA	NA	NA

DBSCAN-SWA_7

165514 : 183283

Escherichia_phage(44.44%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004217321.1\|165514_166219_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000018329.1\|166369_167185_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_044117068.1\|167374_168043_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.9e-130	99.5
WP_004217321.1\|169346_170051_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_004153729.1\|170906_171734_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-20	37.6
WP_004152695.1\|171730_172594_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152694.1\|172602_173430_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_004152693.1\|173438_174449_+	phosphonate dehydrogenase PtxD	A0A1V0SBV6	Catovirus	1.4e-15	25.1
WP_004152692.1\|174442_175312_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000019473.1\|176520_177501_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004118209.1\|178702_178966_-\|transposase	transposase	NA	NA	NA	NA
WP_004118208.1\|178980_179244_+	hypothetical protein	NA	NA	NA	NA
WP_004152118.1\|179487_179769_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_004152117.1\|179803_180373_+	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152116.1\|180487_183283_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0

DBSCAN-SWA_8

192728 : 197035

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152101.1\|192728_193079_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	A0A2H4J145	uncultured_Caudovirales_phage	1.4e-23	50.9
WP_004152100.1\|193128_193491_+	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_004152099.1\|193508_195260_+	arsenite efflux transporter ATPase subunit ArsA	NA	NA	NA	NA
WP_004152098.1\|195307_196597_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.9e-171	74.0
WP_004152097.1\|196609_197035_+	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	2.3e-52	72.9

DBSCAN-SWA_9

200492 : 201206

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152093.1\|200492_201206_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.9e-92	77.0

DBSCAN-SWA_10

205721 : 207122

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152084.1\|205721_207122_-	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	4.1e-18	26.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP018356

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018356_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018356_1

54961-55046

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018356_1

>merge|NZ_CP018356|1|54961-55046|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>NZ_CP018356|1|1|54961-55046|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018356.1\|WP_002888337.1\|52505_53204_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP018356.1\|WP_002888348.1\|57301_57961_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP018356.1\|WP_002888323.1\|45519_45897_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP018356.1\|WP_002888349.1\|61067_63425_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP018356.1\|WP_004147026.1\|49053_51402_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP018356.1\|WP_002888353.1\|63600_64296_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP018356.1\|WP_002888373.1\|68967_69735_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP018356.1\|WP_002888340.1\|53193_54819_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP018356.1\|WP_002888321.1\|44666_45515_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	unknown	unknown	gnl\|CDD\|273208
NZ_CP018356.1\|WP_002888368.1\|65946_67656_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP018356.1\|WP_002888345.1\|55143_56508_+\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP018356.1\|WP_002888329.1\|47712_48999_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP018356.1\|WP_002888324.1\|45899_46721_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP018356.1\|WP_004151368.1\|57973_60880_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP018356.1\|WP_002888332.1\|51645_52473_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP018356.1\|WP_002888347.1\|56687_57227_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP018356.1\|WP_002888370.1\|67993_68839_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP018356.1\|WP_002888327.1\|46717_47707_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP018356.1\|WP_002888320.1\|43931_44411_+\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP018356.1\|WP_002888357.1\|64433_65936_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503

Protein	Function_ID	Function_description	E-value
NZ_CP018356.1\|WP_002888337.1\|52505_53204_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP018356.1\|WP_002888348.1\|57301_57961_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP018356.1\|WP_002888323.1\|45519_45897_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP018356.1\|WP_002888349.1\|61067_63425_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP018356.1\|WP_004147026.1\|49053_51402_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP018356.1\|WP_002888353.1\|63600_64296_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP018356.1\|WP_002888373.1\|68967_69735_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
NZ_CP018356.1\|WP_002888340.1\|53193_54819_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP018356.1\|WP_002888321.1\|44666_45515_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP018356.1\|WP_002888368.1\|65946_67656_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP018356.1\|WP_002888345.1\|55143_56508_+\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP018356.1\|WP_002888329.1\|47712_48999_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP018356.1\|WP_002888324.1\|45899_46721_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP018356.1\|WP_004151368.1\|57973_60880_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP018356.1\|WP_002888332.1\|51645_52473_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP018356.1\|WP_002888347.1\|56687_57227_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP018356.1\|WP_002888370.1\|67993_68839_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP018356.1\|WP_002888327.1\|46717_47707_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP018356.1\|WP_002888320.1\|43931_44411_+\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP018356.1\|WP_002888357.1\|64433_65936_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0

>NZ_CP018356.1|WP_002888340.1|53193_54819_-|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP018356.1|WP_002888337.1|52505_53204_-|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP018356.1|WP_002888332.1|51645_52473_+|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP018356.1|WP_004147026.1|49053_51402_-|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP018356.1|WP_002888329.1|47712_48999_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP018356.1|WP_002888327.1|46717_47707_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP018356.1|WP_002888324.1|45899_46721_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP018356.1|WP_002888323.1|45519_45897_-|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP018356.1|WP_002888321.1|44666_45515_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)-ApaH
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP018356.1|WP_002888320.1|43931_44411_+|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR
>NZ_CP018356.1|WP_002888345.1|55143_56508_+|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP018356.1|WP_002888347.1|56687_57227_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP018356.1|WP_002888348.1|57301_57961_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP018356.1|WP_004151368.1|57973_60880_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP018356.1|WP_002888349.1|61067_63425_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP018356.1|WP_002888353.1|63600_64296_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP018356.1|WP_002888357.1|64433_65936_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP018356.1|WP_002888368.1|65946_67656_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP018356.1|WP_002888370.1|67993_68839_+|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP018356.1|WP_002888373.1|68967_69735_+|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR

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Crispr_ID: NZ_CP018356_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018356_2

875558-875635

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCGCCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018356_2

>merge|NZ_CP018356|2|875558-875635|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>NZ_CP018356|2|2|875558-875635|CRISPRCasFinder
AAGGCGTCAGCCGCCGCCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018356.1\|WP_014342949.1\|871066_872005_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP018356.1\|WP_004142100.1\|880015_880771_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
NZ_CP018356.1\|WP_002895420.1\|872001_873528_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
NZ_CP018356.1\|WP_004229842.1\|863183_863330_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018356.1\|WP_002895284.1\|864057_864981_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225813
NZ_CP018356.1\|WP_002895578.1\|876334_877624_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
NZ_CP018356.1\|WP_002895655.1\|882861_884883_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
NZ_CP018356.1\|WP_004153329.1\|867114_868434_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
NZ_CP018356.1\|WP_048271083.1\|882237_882450_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018356.1\|WP_002895648.1\|880763_881486_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP018356.1\|WP_004151696.1\|865676_866960_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
NZ_CP018356.1\|WP_073520372.1\|885131_886229_-\|two-component-system-sensor-histidine-kinase-PmrB	unknown	unknown	gnl\|CDD\|236751
NZ_CP018356.1\|WP_073520373.1\|886232_886904_-\|two-component-system-response-regulator-PmrA	unknown	unknown	gnl\|CDD\|182612
NZ_CP018356.1\|WP_002895580.1\|877837_878878_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|185063
NZ_CP018356.1\|WP_002895575.1\|875787_876264_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
NZ_CP018356.1\|WP_004151698.1\|868430_869387_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
NZ_CP018356.1\|WP_002895358.1\|869448_870174_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
NZ_CP018356.1\|WP_004147672.1\|873626_875009_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
NZ_CP018356.1\|WP_004151700.1\|878874_880032_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
NZ_CP018356.1\|WP_002895283.1\|863534_864041_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018356.1\|WP_014342949.1\|871066_872005_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP018356.1\|WP_004142100.1\|880015_880771_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.7976e-160
NZ_CP018356.1\|WP_002895420.1\|872001_873528_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
NZ_CP018356.1\|WP_002895284.1\|864057_864981_-\|acyltransferase-family-protein	gnl\|CDD\|225813	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only].	6.63632e-09
NZ_CP018356.1\|WP_002895578.1\|876334_877624_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
NZ_CP018356.1\|WP_002895655.1\|882861_884883_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP018356.1\|WP_004153329.1\|867114_868434_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
NZ_CP018356.1\|WP_073520373.1\|886232_886904_-\|two-component-system-response-regulator-PmrA	gnl\|CDD\|182612	PRK10643, PRK10643, two-component system response regulator PmrA.	3.59425e-145
NZ_CP018356.1\|WP_002895648.1\|880763_881486_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
NZ_CP018356.1\|WP_004151696.1\|865676_866960_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
NZ_CP018356.1\|WP_073520372.1\|885131_886229_-\|two-component-system-sensor-histidine-kinase-PmrB	gnl\|CDD\|236751	PRK10755, PRK10755, two-component system sensor histidine kinase PmrB.	0
NZ_CP018356.1\|WP_004151698.1\|868430_869387_+\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	8.10638e-178
NZ_CP018356.1\|WP_002895575.1\|875787_876264_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
NZ_CP018356.1\|WP_002895580.1\|877837_878878_+\|biotin-synthase-BioB	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
NZ_CP018356.1\|WP_002895358.1\|869448_870174_+\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
NZ_CP018356.1\|WP_004147672.1\|873626_875009_+\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
NZ_CP018356.1\|WP_004151700.1\|878874_880032_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0

>NZ_CP018356.1|WP_004147672.1|873626_875009_+|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>NZ_CP018356.1|WP_002895420.1|872001_873528_+|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLTRLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGEWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>NZ_CP018356.1|WP_014342949.1|871066_872005_+|urocanate-hydratase
MKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>NZ_CP018356.1|WP_002895358.1|869448_870174_+|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>NZ_CP018356.1|WP_004151698.1|868430_869387_+|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIVRAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEAAHQALREAVADCQRVGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLATLLRIVEPLCRNGKLQAVDLVEFNPLFDIDGQGARAAARLAWQIAHWWR
>NZ_CP018356.1|WP_004153329.1|867114_868434_+|imidazolonepropionase
MVFSHKKITFPCAIVDFTGVMKINVYTTHDKLSAMTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDADGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>NZ_CP018356.1|WP_004151696.1|865676_866960_-|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATIGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>NZ_CP018356.1|WP_002895284.1|864057_864981_-|acyltransferase-family-protein
MTAVTFFTIYNTWDRFDYDYHWILGLLTFISTIATPLFFVVAGYLDAQTRHDANWQIGKIKSVVIVFLFWVTVYYVWEPYQRGYLIQPWFIFALIVIYTFHPLIAWLSQRRGLFFAVLLTLLCCSYGYDLLSVIYPDRHLFSLPPQYRLWTWLLFYLTGQLFNDPKVAEWIRNPQVIKGSIIALPFVYLFTWFYERHFFFALFKADRNAFILTGSQIYILIVLLVIAANAVQFKKNREWKEAVLATVSKAMTGVYILHYSVFHLLVMLIPVHSLATKLGVIALTFVLSVLISLAALSSTLLRKVITL
>NZ_CP018356.1|WP_002895283.1|863534_864041_+|hypothetical-protein
MRGKSVMLLAGLASLAQANELNLYSVNTGSYVYHLTNNHGQYTENFENHFFSVERKFSADSKYSLLLGTMNNSFNDRCLALGVRRDWYHSGSGWTFKGVYGYTGEFFFDAFEHCGDHGSYKDFKDATGIGFSPYIYHAIQYNFTDYFAVESGIIIPSVFVISIQWSFR
>NZ_CP018356.1|WP_004229842.1|863183_863330_+|hypothetical-protein
MAGEMHEIAPTREGVNSNAVVDRWLSSASDSEHSGKYDEALSAFCTVR
>NZ_CP018356.1|WP_002895575.1|875787_876264_-|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>NZ_CP018356.1|WP_002895578.1|876334_877624_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVAGESLRLLESGEWQPQVTAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMAALQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>NZ_CP018356.1|WP_002895580.1|877837_878878_+|biotin-synthase-BioB
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>NZ_CP018356.1|WP_004151700.1|878874_880032_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALVDWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGRQRRDILAARIRQFREGMGKVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHAEDINRLLEVLHGHSE
>NZ_CP018356.1|WP_004142100.1|880015_880771_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>NZ_CP018356.1|WP_002895648.1|880763_881486_+|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>NZ_CP018356.1|WP_048271083.1|882237_882450_-|hypothetical-protein
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPLSVGHRKSAAPALTRPDGIGV
>NZ_CP018356.1|WP_002895655.1|882861_884883_+|excinuclease-ABC-subunit-B
MSKSFVLHSAFRPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDVFPAESDDIALRIELFDEEVERLSLFDPLTGHVEGTVPRYTIYPKTHYVTPRERIVQAMEEIKLELAERRKVLLANNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTVPQIGGMYRGDRARKETLVEYGFRLPSALDNRPMKFEEFEALAPQTIYVSATPGAYELDKSGGEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRLRTAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIGETERRREKQQRYNEEHGIVPQGLNKKVVDILQLGQGLAKTKAKGRGKAKAVEPAGLSAVDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS
>NZ_CP018356.1|WP_073520372.1|885131_886229_-|two-component-system-sensor-histidine-kinase-PmrB
MALFATETWTMRHRLLLTIGAILVVCQLISVFWLWHESKEQIQLLVASAIEGHNNQKHVEHEVREAVASLLVPSLLIVGLALYISMLAVRKITRPLSRLQSELENRTPDNLTPIVLSESVPEVTAVTTALNQLVSRLNLTLDRERLFTADVAHELRTPLAGLRLHLELLAKVHGMGVDPLIQRLDQMTTIISQLLQLARVGQSFSAGSYQQVLLLDDVVKPLQDELEAMLAQRQQRLLLTDIENEAVVSGDATLIGVILRNLVENAHRYSPEGSTIRVSVKAGLMPVMAVEDEGPGIDEAKSGELSKAFVRMDSRYGGIGLGLSIVTRIAQLHDAQFFLHNRQPGPGVRAWVLFPQRGGQNVSTH
>NZ_CP018356.1|WP_073520373.1|886232_886904_-|two-component-system-response-regulator-PmrA
MKILVIEDDALLLQGLILAMQSEGYVCDGVSTAHEAALSLASNHYSLIVLDLGLPDEDGLHFLSRMRREKMTQPVLILTARDTLEDRISGLDTGADDYLVKPFAQEELNARIRALLRRHNNQGDNEISVGNLRLNVTRRLVWLGETALDLTPKEYALLSRLMMKAGSPVHREILYNDIYSWDNEPATNTLEVHIHNLREKIGKSRIRTVRGFGYMLANNIDTE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

306689 : 318343

Enterobacteria_phage(70.0%)

integrase

attL 294823:294837|attR 317880:317894

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
294823:294837	attL	NA	NA	NA	NA
WP_002889890.1\|306689_309023_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
WP_002889897.1\|309034_309355_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889911.1\|309351_309579_-	hypothetical protein	NA	NA	NA	NA
WP_024940872.1\|309575_310133_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889915.1\|310129_310396_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_002889917.1\|310937_311675_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-73	60.7
WP_002889919.1\|311671_311917_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	1.9e-19	58.0
WP_002889930.1\|311934_312501_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-59	64.3
WP_004152979.1\|313069_313495_-	hypothetical protein	NA	NA	NA	NA
WP_004152029.1\|313494_314445_-	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
WP_002889938.1\|314432_315623_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_002889940.1\|315975_317229_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_004144574.1\|317239_318343_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
317880:317894	attR	NA	NA	NA	NA

DBSCAN-SWA_2

969132 : 1006468

Salmonella_phage(87.18%)

portal,head,lysis,plate,integrase,tail,capsid,terminase

attL 969040:969058|attR 1006540:1006558

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
969040:969058	attL	NA	NA	NA	NA
WP_014342959.1\|969132_970113_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-97	57.2
WP_004178082.1\|970600_972088_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004150866.1\|972186_973131_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|973142_974021_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_000188448.1\|974166_974388_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|974420_974930_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956179.1\|974937_975138_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000963473.1\|975101_975443_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_004150864.1\|975510_975744_+	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000752622.1\|975743_975971_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150863.1\|975967_976825_+	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_004150862.1\|976821_979236_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_001154434.1\|979389_979578_+	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_001217575.1\|979588_979822_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_000700647.1\|979936_980614_+	hypothetical protein	NA	NA	NA	NA
WP_002895959.1\|982693_983719_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004150858.1\|983718_985485_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895967.1\|985627_986461_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_002895972.1\|986477_987536_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_000059191.1\|987539_988190_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002896151.1\|988285_988750_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_002896155.1\|988749_988953_+\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896158.1\|988956_989172_+	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896161.1\|989152_989662_+	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896163.1\|989666_990050_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896168.1\|990046_990475_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896170.1\|990461_990608_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	6.0e-13	76.1
WP_002896172.1\|990570_991002_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896175.1\|990994_991441_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_004150857.1\|991437_992130_-	hypothetical protein	NA	NA	NA	NA
WP_002896177.1\|992224_992797_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_002896179.1\|992793_993156_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
WP_002896182.1\|993142_994051_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_004150856.1\|994043_994643_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_019724930.1\|996861_997596_+	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|997599_998331_+	hypothetical protein	NA	NA	NA	NA
WP_002896188.1\|998327_998531_+	hypothetical protein	NA	NA	NA	NA
WP_002896191.1\|998560_999637_+\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896193.1\|999775_1000948_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896201.1\|1000957_1001473_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896204.1\|1001525_1001825_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896220.1\|1001839_1001959_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896222.1\|1001951_1004579_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
WP_002896224.1\|1004575_1005061_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_002896225.1\|1005057_1006158_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_000972391.1\|1006249_1006468_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
1006540:1006558	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1040884 : 1050348

Dickeya_phage(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002896440.1\|1040884_1042000_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_004150848.1\|1041996_1043937_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896516.1\|1044013_1044235_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_002896520.1\|1044560_1044878_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896522.1\|1044908_1047188_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_001040187.1\|1047308_1047527_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_002898014.1\|1047880_1048582_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_004150847.1\|1048626_1050348_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_4

1149732 : 1172388

Pectobacterium_phage(28.57%)

integrase,tail,head

attL 1148635:1148649|attR 1181595:1181609

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1148635:1148649	attL	NA	NA	NA	NA
WP_016197576.1\|1149732_1150761_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	4.4e-94	54.1
WP_004199480.1\|1150764_1150989_-	DUF4224 domain-containing protein	H9C153	Pectobacterium_phage	4.5e-20	68.1
WP_022644592.1\|1151385_1151952_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	2.5e-51	61.5
WP_022644593.1\|1151951_1154081_-	hypothetical protein	H9C157	Pectobacterium_phage	8.0e-98	34.6
WP_022644594.1\|1154110_1154356_-	hypothetical protein	A0A1B1W282	Salmonella_phage	3.7e-15	59.5
WP_024623105.1\|1154363_1154597_-	hypothetical protein	NA	NA	NA	NA
WP_025712912.1\|1155538_1155925_-	helix-turn-helix domain-containing protein	A5VW98	Enterobacteria_phage	3.4e-15	57.8
WP_022644596.1\|1156005_1156200_+	hypothetical protein	NA	NA	NA	NA
WP_022644597.1\|1156260_1156707_+	hypothetical protein	H9C162	Pectobacterium_phage	5.7e-30	56.1
WP_016197573.1\|1156790_1156949_+	hypothetical protein	NA	NA	NA	NA
WP_032409672.1\|1156951_1157935_+	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	1.3e-39	73.8
WP_022644599.1\|1157931_1159320_+	AAA family ATPase	Q8HA30	Enterobacteria_phage	7.5e-105	46.6
WP_022644600.1\|1159358_1160009_+	hypothetical protein	NA	NA	NA	NA
WP_022644601.1\|1160012_1160246_+	hypothetical protein	NA	NA	NA	NA
WP_022644602.1\|1160285_1161071_+	chromosome partitioning protein ParB	C7BGF1	Burkholderia_phage	7.8e-67	54.9
WP_004141582.1\|1161790_1162021_+	hypothetical protein	A0A2H4JCC5	uncultured_Caudovirales_phage	5.0e-06	37.3
WP_022644604.1\|1162017_1162635_+	HNH endonuclease	NA	NA	NA	NA
WP_032409673.1\|1162647_1162986_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	8.6e-47	82.0
WP_029499143.1\|1163166_1163358_+	hypothetical protein	NA	NA	NA	NA
WP_004199500.1\|1163426_1164020_+	DUF1367 family protein	H9C173	Pectobacterium_phage	7.2e-81	72.1
WP_071570746.1\|1164009_1164333_+	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	6.8e-25	55.8
WP_022644607.1\|1164320_1164668_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004199525.1\|1164673_1165114_+	phage family protein	R9TRJ4	Aeromonas_phage	4.3e-14	43.8
WP_004199492.1\|1165154_1165679_+	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	2.5e-45	54.1
WP_004199520.1\|1165740_1165974_+	hypothetical protein	NA	NA	NA	NA
WP_004199477.1\|1165957_1166218_+	hypothetical protein	NA	NA	NA	NA
WP_004199526.1\|1166224_1166677_+	DNA-packaging protein	A3EYX3	Salmonella_phage	1.1e-49	66.4
WP_004199513.1\|1166761_1168156_+	hypothetical protein	A0A0E3JIA1	Rhodoferax_phage	2.4e-58	36.4
WP_004141558.1\|1168155_1169820_+\|head,tail	head-tail connector protein	A0A221SAN2	Ralstonia_phage	3.1e-105	39.4
WP_004199528.1\|1169822_1170146_+	hypothetical protein	NA	NA	NA	NA
WP_004199538.1\|1170132_1170870_+	hypothetical protein	NA	NA	NA	NA
WP_004191051.1\|1170880_1171876_+	hypothetical protein	W6MW28	Pseudomonas_phage	2.7e-104	60.2
WP_004191050.1\|1171914_1172388_+	hypothetical protein	K4NYY6	Pseudomonas_phage	1.8e-26	46.3
1181595:1181609	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1177504 : 1193584

Salmonella_phage(50.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022644615.1\|1177504_1180012_+	transglycosylase SLT domain-containing protein	Q858G0	Salmonella_phage	7.6e-55	26.4
WP_022644616.1\|1180011_1181853_+	hypothetical protein	Q858F9	Salmonella_phage	9.4e-79	33.4
WP_022644617.1\|1181852_1184570_+	hypothetical protein	Q858F8	Salmonella_phage	8.5e-262	51.2
WP_127897200.1\|1184566_1184890_+	hypothetical protein	NA	NA	NA	NA
WP_022644619.1\|1185337_1186588_-	hypothetical protein	NA	NA	NA	NA
WP_004191041.1\|1186800_1187016_+\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	1.4e-10	55.9
WP_004191039.1\|1187017_1187557_+	lysozyme	H6WRZ4	Salmonella_phage	1.0e-81	78.1
WP_009308366.1\|1187553_1188084_+	hypothetical protein	K7P6W1	Enterobacteria_phage	2.4e-35	48.9
WP_004199504.1\|1188080_1188233_+	DUF1378 family protein	NA	NA	NA	NA
WP_022644698.1\|1188324_1190742_+	hypothetical protein	A0A193GYU1	Enterobacter_phage	5.8e-60	46.6
WP_022644621.1\|1190752_1190947_+	hypothetical protein	NA	NA	NA	NA
WP_071784388.1\|1191145_1192642_-	hypothetical protein	A0A0A8J9V7	Klebsiella_phage	7.9e-68	34.5
WP_004199521.1\|1192765_1193335_+	recombinase family protein	A0A286S1P7	Klebsiella_phage	3.9e-84	86.8
WP_004199491.1\|1193308_1193584_-	hypothetical protein	A0A0M3ULK3	Salmonella_phage	1.9e-23	60.9

DBSCAN-SWA_6

1517959 : 1589713

uncultured_Caudovirales_phage(35.29%)

transposase,integrase,terminase,holin,plate

attL 1516040:1516054|attR 1524980:1524994

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1516040:1516054	attL	NA	NA	NA	NA
WP_004152144.1\|1517959_1518721_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5
WP_004152145.1\|1518937_1520470_+	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_016197745.1\|1520668_1521217_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_004152147.1\|1521413_1522595_+\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_004152148.1\|1522575_1522818_-	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004198245.1\|1522777_1522924_-	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
WP_014343018.1\|1522996_1523230_-	hypothetical protein	NA	NA	NA	NA
WP_004152150.1\|1523472_1523685_-	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
WP_004152151.1\|1523681_1523906_-	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004154298.1\|1523895_1524606_-	Rha family transcriptional regulator	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152153.1\|1524611_1525130_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
1524980:1524994	attR	NA	NA	NA	NA
WP_004152154.1\|1525234_1526062_-	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152155.1\|1526058_1526253_-	hypothetical protein	NA	NA	NA	NA
WP_004152156.1\|1526249_1526675_-	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004177208.1\|1526671_1526890_-	hypothetical protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
WP_004152157.1\|1526861_1527116_-	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
WP_004152158.1\|1527108_1527474_-	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
WP_004152159.1\|1527643_1527832_-	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004152160.1\|1527824_1528139_-	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152161.1\|1528309_1528978_-	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152162.1\|1529075_1529297_+	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004198228.1\|1529873_1531532_+	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004198233.1\|1531533_1532496_+	toprim domain-containing protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198239.1\|1532492_1532969_+	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004152167.1\|1532965_1533748_+	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004146526.1\|1534153_1534402_+\|holin	class II holin family protein	NA	NA	NA	NA
WP_004152169.1\|1534404_1534935_+	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004153952.1\|1534931_1535321_+	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152170.1\|1535555_1535876_+	hypothetical protein	NA	NA	NA	NA
WP_004218030.1\|1536241_1536730_+	hypothetical protein	NA	NA	NA	NA
WP_004152172.1\|1536680_1538081_+\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004152173.1\|1538318_1539770_+	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152174.1\|1539825_1540374_+	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004199270.1\|1540425_1541628_+	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_000528476.1\|1541631_1542126_+	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_001132269.1\|1542137_1543079_+	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000725700.1\|1543118_1543400_+	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|1543368_1543788_+	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000834982.1\|1543784_1544291_+	hypothetical protein	NA	NA	NA	NA
WP_001116156.1\|1544290_1544677_+	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_004152176.1\|1544771_1545212_+	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_004152177.1\|1545215_1546361_+	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152178.1\|1546371_1546662_+	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.6e-23	85.5
WP_085955245.1\|1546602_1547795_-\|transposase	IS3-like element ISKpn18 family transposase	U5P429	Shigella_phage	3.5e-50	43.5
WP_004152564.1\|1548121_1548547_+	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_004152565.1\|1548582_1548735_+	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152566.1\|1548724_1550728_+	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152567.1\|1550727_1551327_+	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_004217362.1\|1551402_1551630_+	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	4.6e-20	56.0
WP_004152569.1\|1551632_1552655_+	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004152570.1\|1552654_1552996_+	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004199301.1\|1553045_1553228_+	hypothetical protein	NA	NA	NA	NA
WP_004152571.1\|1553270_1553837_+	hypothetical protein	NA	NA	NA	NA
WP_004152572.1\|1553890_1554544_+	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004152573.1\|1554545_1554899_+	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152574.1\|1554898_1556095_+\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152575.1\|1556091_1556865_+	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152576.1\|1556864_1557731_+	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5
WP_004152577.1\|1557730_1557928_+	hypothetical protein	NA	NA	NA	NA
WP_004218487.1\|1560278_1561007_+	hypothetical protein	NA	NA	NA	NA
WP_002902128.1\|1561017_1561749_+	hypothetical protein	NA	NA	NA	NA
WP_002902131.1\|1561745_1561955_+	hypothetical protein	NA	NA	NA	NA
WP_002902133.1\|1562059_1562344_+	hypothetical protein	NA	NA	NA	NA
WP_002902136.1\|1562566_1562815_-	DinI-like family protein	S5MQI1	Escherichia_phage	1.4e-25	70.4
WP_002902144.1\|1563660_1564152_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002902148.1\|1564194_1565739_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_004218490.1\|1565748_1567092_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004151603.1\|1567088_1567778_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004151602.1\|1567774_1569481_+	OmpA family protein	NA	NA	NA	NA
WP_002902160.1\|1569485_1569977_+	type VI secretion system effector Hcp	NA	NA	NA	NA
WP_002902163.1\|1570241_1572896_+	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.5e-96	33.4
WP_004228410.1\|1572897_1575267_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	9.1e-18	33.8
WP_002902169.1\|1575267_1576047_+	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_002902172.1\|1576110_1576641_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902174.1\|1576709_1577240_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902176.1\|1577307_1577838_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902178.1\|1577906_1578437_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902180.1\|1578504_1579035_+	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_004151601.1\|1579022_1581440_+	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_002902252.1\|1581484_1581742_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_002902254.1\|1581738_1582878_+	hypothetical protein	NA	NA	NA	NA
WP_004151599.1\|1582861_1586287_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_004151598.1\|1587958_1589713_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_7

1785227 : 1796114

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002210516.1\|1785227_1785848_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
WP_004151609.1\|1785840_1787106_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_004151610.1\|1787117_1788020_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_002210513.1\|1788280_1789042_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004176269.1\|1789062_1789923_-	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002904006.1\|1790220_1790481_+	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_001620097.1\|1790567_1791656_+	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_004151612.1\|1791686_1792952_-	MFS transporter	NA	NA	NA	NA
WP_004151613.1\|1793006_1796114_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6

DBSCAN-SWA_8

2445095 : 2488195

Microcystis_virus(25.0%)

tRNA,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002910404.1\|2445095_2446352_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_002910405.1\|2446622_2447234_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_004217879.1\|2447233_2448082_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_002910407.1\|2448265_2449213_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	2.3e-44	37.5
WP_004152259.1\|2449337_2451017_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	7.9e-24	23.4
WP_002910436.1\|2451017_2452064_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_002910437.1\|2452286_2452562_-	stress-induced protein YchH	NA	NA	NA	NA
WP_002910438.1\|2452834_2453419_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_002910443.1\|2453536_2454628_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_002910446.1\|2454710_2454920_-	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_002910453.1\|2455121_2456036_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152260.1\|2456167_2457583_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_004152261.1\|2457602_2458046_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_002910493.1\|2458048_2458585_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_004152910.1\|2458565_2459582_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_002910495.1\|2459611_2461375_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004152262.1\|2461508_2464919_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_004198077.1\|2464902_2466060_-	hypothetical protein	NA	NA	NA	NA
WP_002910497.1\|2466063_2466330_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_072093174.1\|2466627_2466813_-	hypothetical protein	NA	NA	NA	NA
WP_171815252.1\|2467073_2467376_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|2467433_2468414_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004152632.1\|2468750_2469641_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	4.1e-11	29.8
WP_002910539.1\|2469816_2470710_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	2.8e-12	27.1
WP_038435084.1\|2470731_2470860_-	hypothetical protein	NA	NA	NA	NA
WP_004152633.1\|2470885_2471779_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	1.7e-12	27.3
WP_004217423.1\|2471800_2471917_-	hypothetical protein	NA	NA	NA	NA
WP_002910544.1\|2471962_2472856_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	6.7e-14	30.5
WP_002910547.1\|2472877_2473183_-	hypothetical protein	NA	NA	NA	NA
WP_002910551.1\|2474698_2475205_-	hypothetical protein	NA	NA	NA	NA
WP_004153085.1\|2475201_2475531_-	hypothetical protein	NA	NA	NA	NA
WP_004199326.1\|2475527_2475710_-	hypothetical protein	NA	NA	NA	NA
WP_022644641.1\|2475851_2476820_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	6.5e-180	96.3
WP_002910586.1\|2478425_2478935_-	hypothetical protein	NA	NA	NA	NA
WP_002910589.1\|2478924_2479077_-	hypothetical protein	NA	NA	NA	NA
WP_002910591.1\|2479171_2479678_-	hypothetical protein	NA	NA	NA	NA
WP_002910593.1\|2479674_2480184_-	hypothetical protein	NA	NA	NA	NA
WP_004152319.1\|2480184_2481540_-	S-type pyocin domain-containing protein	NA	NA	NA	NA
WP_004152317.1\|2484503_2486201_-	OmpA family protein	NA	NA	NA	NA
WP_004152316.1\|2486204_2486858_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_002910645.1\|2486854_2488195_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA

DBSCAN-SWA_9

2795396 : 2802303

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151135.1\|2795396_2796875_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.1e-29	28.3
WP_002912634.1\|2796871_2797594_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	6.4e-31	33.2
WP_002912635.1\|2797912_2799274_+\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.5e-206	94.5
WP_004151134.1\|2799516_2800413_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_002912638.1\|2800655_2801429_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-25	36.3
WP_004175147.1\|2801439_2802303_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_10

3102065 : 3176210

Salmonella_phage(43.14%)

tRNA,transposase,integrase,tail,holin,protease,terminase

attL 3107707:3107724|attR 3175199:3175216

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152006.1\|3102065_3104069_-\|tRNA	tRNA(Met) cytidine acetyltransferase	NA	NA	NA	NA
WP_002913800.1\|3104078_3104954_-	neutral zinc metallopeptidase	NA	NA	NA	NA
WP_002913801.1\|3105073_3105787_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A127KMU1	Cyanophage	1.1e-38	35.7
WP_002913802.1\|3106002_3107037_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_002913803.1\|3107053_3107932_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
3107707:3107724	attL	NA	NA	NA	NA
WP_002913804.1\|3108085_3108652_+	glycine cleavage system transcriptional repressor	NA	NA	NA	NA
WP_002913805.1\|3108655_3109126_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_002913806.1\|3109187_3110249_-	AI-2E family transporter	NA	NA	NA	NA
WP_004221267.1\|3110303_3110420_-	hypothetical protein	NA	NA	NA	NA
WP_002913807.1\|3110471_3111935_+\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
WP_002913810.1\|3111944_3112304_+	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
WP_002913812.1\|3112431_3113343_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8
WP_020947395.1\|3113339_3114041_-	DnaA inactivator Hda	NA	NA	NA	NA
WP_002913824.1\|3114139_3115426_-	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
WP_002913827.1\|3115521_3116148_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002913829.1\|3116365_3117799_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002913833.1\|3117808_3118702_-	ROK family protein	NA	NA	NA	NA
WP_002913836.1\|3118965_3120003_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.2e-72	44.5
WP_004152007.1\|3119999_3120641_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.2e-28	41.1
WP_002913838.1\|3120821_3122882_+	polyphosphate kinase 1	NA	NA	NA	NA
WP_002913839.1\|3122885_3124418_+	exopolyphosphatase	NA	NA	NA	NA
WP_002913841.1\|3124471_3126700_-	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_004174861.1\|3127070_3127244_+	DUF2633 family protein	G9L6F2	Escherichia_phage	1.4e-16	78.8
WP_004221278.1\|3127340_3128252_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002913847.1\|3128325_3129558_+	MFS transporter	NA	NA	NA	NA
WP_004162150.1\|3129851_3131030_+	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_004152009.1\|3131013_3132882_+	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
WP_073520381.1\|3133101_3133584_-	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.3e-67	88.8
WP_073520382.1\|3133580_3134210_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.5e-89	76.4
WP_002913854.1\|3134199_3134505_-\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	1.6e-39	82.4
WP_073520383.1\|3134491_3134896_-	hypothetical protein	T1SA79	Salmonella_phage	1.2e-55	83.3
WP_164488131.1\|3134986_3135157_-	hypothetical protein	NA	NA	NA	NA
WP_073520384.1\|3135158_3137420_-\|tail	phage tail protein	A0A0A8J9V7	Klebsiella_phage	1.4e-71	36.4
WP_004141317.1\|3138255_3138801_+	DUF2335 domain-containing protein	NA	NA	NA	NA
WP_073520387.1\|3139401_3142176_-	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	78.8
WP_073520388.1\|3142175_3144053_-	hypothetical protein	Q858F9	Salmonella_phage	1.2e-198	59.2
WP_073520389.1\|3144052_3146569_-	hypothetical protein	Q858G0	Salmonella_phage	9.4e-247	52.8
WP_024622833.1\|3146581_3147079_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	5.2e-24	41.7
WP_049139501.1\|3147071_3147542_-	hypothetical protein	Q858G2	Salmonella_phage	7.3e-44	55.3
WP_073520390.1\|3147543_3150021_-	hypothetical protein	G9L6D0	Escherichia_phage	8.0e-267	56.5
WP_073520391.1\|3150020_3150632_-	hypothetical protein	T1SAQ2	Salmonella_phage	2.7e-46	48.3
WP_073520392.1\|3150680_3150959_-	hypothetical protein	T1SA01	Salmonella_phage	1.1e-20	58.9
WP_004152466.1\|3150951_3151344_-	hypothetical protein	T1SA71	Salmonella_phage	1.5e-55	89.9
WP_004197367.1\|3151353_3152361_-	bbp17	T1S9H9	Salmonella_phage	2.1e-181	92.8
WP_181404411.1\|3152373_3153051_-	peptidase	T1SAP9	Salmonella_phage	3.2e-48	65.7
WP_004152470.1\|3153053_3153359_-	hypothetical protein	Q2A090	Sodalis_phage	1.1e-16	51.3
WP_004149313.1\|3153355_3155035_-\|tail	tail protein	T1S9Z7	Salmonella_phage	3.6e-194	59.3
WP_004152472.1\|3155038_3155242_-	hypothetical protein	NA	NA	NA	NA
WP_148721725.1\|3155688_3155991_+	hypothetical protein	NA	NA	NA	NA
WP_148721726.1\|3156063_3156474_+	hypothetical protein	NA	NA	NA	NA
WP_073520394.1\|3156470_3157946_-\|terminase	terminase	Q858H3	Salmonella_phage	9.3e-279	92.4
WP_004152523.1\|3157942_3158527_-\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	2.4e-89	88.1
WP_004152524.1\|3158604_3158862_-	hypothetical protein	NA	NA	NA	NA
WP_004152525.1\|3158936_3159275_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	4.7e-45	80.0
WP_004152526.1\|3159274_3159514_-	hypothetical protein	G8C7S3	Escherichia_phage	4.6e-10	48.0
WP_004152527.1\|3159506_3160175_-	DUF551 domain-containing protein	Q6UAT8	Klebsiella_phage	1.5e-05	52.5
WP_004141386.1\|3160171_3160384_-	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_004152528.1\|3160384_3160555_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	2.5e-15	69.6
WP_004152529.1\|3160554_3161298_-	hypothetical protein	A6N3G8	Burkholderia_virus	1.5e-19	59.5
WP_004152530.1\|3161294_3161720_-	hypothetical protein	NA	NA	NA	NA
WP_004152531.1\|3161716_3161908_-	hypothetical protein	NA	NA	NA	NA
WP_004152532.1\|3161891_3162302_-	hypothetical protein	A0A2P1MXC5	Escherichia_phage	3.1e-14	42.2
WP_004152534.1\|3162494_3162842_-	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	5.0e-50	82.6
WP_004152535.1\|3162961_3163747_-	replication protein	A0A193GYX1	Enterobacter_phage	8.2e-133	87.4
WP_004207253.1\|3163743_3164511_-	hypothetical protein	A0A193GZ86	Enterobacter_phage	8.9e-140	91.4
WP_004152537.1\|3164510_3164720_-	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_004152538.1\|3164866_3165100_-	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004144290.1\|3165253_3165835_+	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	7.1e-65	64.3
WP_004164037.1\|3166053_3166203_+	hypothetical protein	G9L6A5	Escherichia_phage	7.9e-13	84.2
WP_048981781.1\|3166199_3167267_+	hypothetical protein	A0A2H4JIB1	uncultured_Caudovirales_phage	2.9e-40	76.5
WP_047718663.1\|3167274_3167574_+	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	4.7e-20	54.5
WP_059065285.1\|3167570_3168470_+	YqaJ viral recombinase family protein	Q858E0	Salmonella_phage	1.9e-157	91.0
WP_004152542.1\|3168479_3169502_+	recombination protein RecT	Q858E1	Salmonella_phage	2.4e-180	95.3
WP_004144294.1\|3169552_3169801_+	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
WP_040025490.1\|3169910_3170204_+	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	8.9e-32	70.1
WP_073520395.1\|3170196_3170355_+	DUF1317 family protein	T1SAR0	Salmonella_phage	4.3e-17	76.9
WP_073520396.1\|3170351_3170858_+	hypothetical protein	NA	NA	NA	NA
WP_073520397.1\|3170854_3171451_+	adenine methylase	T1SA14	Salmonella_phage	4.1e-108	92.3
WP_073520398.1\|3171447_3171639_+	hypothetical protein	NA	NA	NA	NA
WP_073520399.1\|3171656_3172907_-\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	6.8e-206	85.1
WP_004151979.1\|3173098_3174676_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_004151980.1\|3174743_3176210_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
3175199:3175216	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4010978 : 4059820

uncultured_Caudovirales_phage(68.75%)

tRNA,portal,head,tail,capsid,protease,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002918465.1\|4010978_4011473_-\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	1.5e-26	54.8
WP_002918467.1\|4011476_4012115_-	stringent starvation protein A	NA	NA	NA	NA
WP_135801240.1\|4012084_4012369_-	hypothetical protein	NA	NA	NA	NA
WP_000829818.1\|4012426_4012819_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_002918559.1\|4012834_4013263_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_004144945.1\|4013528_4014656_-	cell division protein ZapE	NA	NA	NA	NA
WP_002918565.1\|4014846_4015245_+	DUF1043 family protein	NA	NA	NA	NA
WP_002918566.1\|4015418_4016786_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	6.0e-22	25.3
WP_002918568.1\|4016873_4017932_+	outer membrane-stress sensor serine endopeptidase DegS	NA	NA	NA	NA
WP_002918570.1\|4018068_4019007_-	malate dehydrogenase	NA	NA	NA	NA
WP_002918625.1\|4019421_4019892_+	transcriptional regulator ArgR	NA	NA	NA	NA
WP_002918626.1\|4020267_4020531_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918627.1\|4020629_4020896_+	peroxide/acid stress response protein YhcN	NA	NA	NA	NA
WP_002918629.1\|4020946_4021222_-	barstar family protein	NA	NA	NA	NA
WP_002918632.1\|4021301_4023269_-	p-hydroxybenzoic acid efflux pump subunit AaeB	NA	NA	NA	NA
WP_002918639.1\|4023274_4024207_-	p-hydroxybenzoic acid efflux pump subunit AaeA	NA	NA	NA	NA
WP_002918640.1\|4024214_4024418_-	AaeX family protein	NA	NA	NA	NA
WP_002918641.1\|4024549_4025479_+	HTH-type transcriptional activator AaeR	NA	NA	NA	NA
WP_002918642.1\|4025514_4026960_-\|protease	metalloprotease TldD	NA	NA	NA	NA
WP_004150952.1\|4027048_4030846_-	AsmA2 domain-containing protein YhdP	NA	NA	NA	NA
WP_002918644.1\|4030883_4032353_-	ribonuclease G	NA	NA	NA	NA
WP_002918646.1\|4032355_4032937_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_002918648.1\|4032944_4033433_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_004149974.1\|4033432_4034425_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_002918653.1\|4034495_4035539_-	rod shape-determining protein MreB	F2Y0P3	Organic_Lake_phycodnavirus	6.7e-05	22.3
WP_002918686.1\|4035844_4037785_-	RNase E specificity factor CsrD	NA	NA	NA	NA
WP_002918687.1\|4037864_4038056_-	hypothetical protein	NA	NA	NA	NA
WP_002918688.1\|4038284_4039286_+	protein-methionine-sulfoxide reductase catalytic subunit MsrP	NA	NA	NA	NA
WP_002918689.1\|4039285_4039894_+	protein-methionine-sulfoxide reductase heme-binding subunit MsrQ	NA	NA	NA	NA
WP_002918732.1\|4040117_4040570_+	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
WP_002918736.1\|4040592_4041060_+	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA
WP_002918738.1\|4041070_4042420_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_002918740.1\|4042530_4042773_+	YhdT family protein	NA	NA	NA	NA
WP_002918742.1\|4042762_4044214_+	sodium/pantothenate symporter	NA	NA	NA	NA
WP_002918745.1\|4044225_4045107_+	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
WP_004144972.1\|4045464_4046430_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_000462905.1\|4046454_4046751_+	DNA-binding transcriptional regulator Fis	NA	NA	NA	NA
WP_004150954.1\|4046904_4047096_-	hypothetical protein	NA	NA	NA	NA
WP_004150955.1\|4047098_4048760_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
WP_000113647.1\|4048743_4049100_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150957.1\|4049230_4049383_-	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
WP_004150959.1\|4049375_4049819_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_001547824.1\|4049818_4050118_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150961.1\|4050114_4050450_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_004150962.1\|4050446_4051688_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_001547826.1\|4051689_4052250_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_001549743.1\|4052301_4053468_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_004150963.1\|4053731_4054244_+	hypothetical protein	NA	NA	NA	NA
WP_004150964.1\|4054291_4054627_-	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|4054969_4057105_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_001549749.1\|4057104_4057470_-	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|4057466_4057835_-	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_004150967.1\|4057831_4058146_-	hypothetical protein	NA	NA	NA	NA
WP_001549752.1\|4058138_4058327_-	hypothetical protein	NA	NA	NA	NA
WP_106918304.1\|4058319_4058589_-	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_004150969.1\|4059040_4059820_-	phage antirepressor KilAC domain-containing protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5

DBSCAN-SWA_12

5160481 : 5166306

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152202.1\|5160481_5161048_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8
WP_004152203.1\|5161065_5161311_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152204.1\|5161307_5162045_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_000556592.1\|5162605_5162872_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_004153681.1\|5162868_5163417_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_004152205.1\|5163413_5163641_+	hypothetical protein	NA	NA	NA	NA
WP_004152206.1\|5163637_5163958_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152207.1\|5163972_5166306_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP018354

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 9663

Escherichia_phage(40.0%)

integrase,transposase

attL 2198:2212|attR 13802:13816

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000339857.1\|518_788_+	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|964_1831_-	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
2198:2212	attL	NA	NA	NA	NA
WP_032409716.1\|2360_2465_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|3047_3752_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_063840280.1\|4102_4657_-	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
WP_001217881.1\|4890_5448_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_001143775.1\|5609_8615_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.3
WP_000015958.1\|8886_9663_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
13802:13816	attR	NA	NA	NA	NA

DBSCAN-SWA_2

16268 : 44641

Salmonella_phage(28.57%)

integrase,transposase

attL 15165:15224|attR 36396:36523

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
15165:15224	attL	NA	NA	NA	NA
WP_000602738.1\|16268_17021_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.4e-41	44.7
WP_000742814.1\|17442_18468_-	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA
WP_001199192.1\|18696_19473_-	aminoglycoside N-acetyltransferase AAC(3)-IVa	NA	NA	NA	NA
WP_001067858.1\|19588_20293_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_011264039.1\|20365_20605_+	macrolide transporter	A0A2K5B2B5	Erysipelothrix_phage	9.5e-08	46.2
WP_000612791.1\|20750_21614_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
WP_001354008.1\|21651_21897_+	GrpB family protein	NA	NA	NA	NA
WP_000034420.1\|22365_23157_+	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
WP_109023896.1\|23159_23435_-	hypothetical protein	NA	NA	NA	NA
WP_000800531.1\|24336_24669_-	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA
WP_001206316.1\|24838_25630_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
WP_000095725.1\|25722_26982_-	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
WP_001261740.1\|27243_28035_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000050382.1\|28092_28701_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_001456218.1\|28796_29639_-	alpha/beta fold putative hydrolase EstX	NA	NA	NA	NA
WP_000845048.1\|29805_30819_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_000454193.1\|31021_31372_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_001161490.1\|31547_32108_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	1.1e-59	100.0
WP_001138014.1\|32111_35078_+\|transposase	Tn3-like element TnAs1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	100.0
WP_001039464.1\|35925_36312_+	hypothetical protein	NA	NA	NA	NA
WP_030005799.1\|36451_37420_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	5.5e-179	95.7
36396:36523	attR	NA	NA	NA	NA
WP_004178082.1\|39989_41477_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_000776034.1\|41882_42314_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
WP_001754953.1\|42313_43585_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	5.4e-150	63.7
WP_000064119.1\|43666_44641_-	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	5.0e-87	54.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018355

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018356

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP018354

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection