CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP018683	Vibrio harveyi strain QT520 plasmid p2, complete sequence	0 crisprs	NA	0	0	0
NZ_CP018682	Vibrio harveyi strain QT520 plasmid p1, complete sequence	0 crisprs	NA	0	0	0
NZ_CP018684	Vibrio harveyi strain QT520 plasmid p3, complete sequence	1 crisprs	NA	0	1	0
NZ_CP018680	Vibrio harveyi strain QT520 chromosome 1, complete sequence	2 crisprs	cas3,csx1,DinG,DEDDh,csa3	1	1	5
NZ_CP018681	Vibrio harveyi strain QT520 chromosome 2, complete sequence	1 crisprs	csa3,cas3,DEDDh	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018684_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018684_1

2244-2327

Orphan

Consensus_repeat	Method
TGTGTATTACACATGTAATACAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018684_1

>merge|NZ_CP018684|1|2244-2327|CRISPRCasFinder
TATTTATTATATGTGTATTACACATGTAATACATTGACGTTTGCCCAATTGTTCGATATTTTATGTATTACACATGTAATACAT

>NZ_CP018684|1|1|2244-2327|CRISPRCasFinder
TATTTATTATATGTGTATTACAC	ATGTAATACATTGACGTTTGCCCAATTGTTCGATATTT
TATGTATTACACATGTAATACAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018684.2\|WP_074052119.1\|7587_8316_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018684.2\|WP_017191052.1\|3623_3824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018684.2\|WP_074052118.1\|885_1713_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018684.2\|WP_017420534.1\|9361_9634_+\|DUF1778-domain-containing-protein	unknown	unknown	gnl\|CDD\|226860
NZ_CP018684.2\|WP_017191051.1\|3117_3414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018684.2\|WP_017191060.1\|9630_10128_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP018684.2\|WP_017819283.1\|10273_10702_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018684.2\|WP_017191055.1\|5424_5679_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	unknown	unknown	gnl\|CDD\|171099
NZ_CP018684.2\|WP_017191054.1\|5162_5432_-\|Txe/YoeB-family-addiction-module-toxin	unknown	unknown	gnl\|CDD\|284238
NZ_CP018684.2\|WP_017191058.1\|8774_9134_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018684.2\|WP_017191050.1\|2340_3108_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113

Protein	Function_ID	Function_description	E-value
NZ_CP018684.2\|WP_017420534.1\|9361_9634_+\|DUF1778-domain-containing-protein	gnl\|CDD\|226860	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown].	1.7096e-20
NZ_CP018684.2\|WP_017191055.1\|5424_5679_-\|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin	gnl\|CDD\|171099	PRK11409, PRK11409, YoeB-YefM toxin-antitoxin system antitoxin YefM.	8.58194e-20
NZ_CP018684.2\|WP_017191054.1\|5162_5432_-\|Txe/YoeB-family-addiction-module-toxin	gnl\|CDD\|284238	pfam06769, YoeB_toxin, YoeB-like toxin of bacterial type II toxin-antitoxin system. YoeB_toxin is a family of bacterial toxins that forms one component of the type II toxin-antitoxin system in E. coli whose antitoxin is represented by YefM, found in pfam02604. The plasmid encoded Axe-Txe proteins in Enterococcus faecium act as an antitoxin-toxin pair. When the plasmid is lost, the antitoxin is degraded relatively quickly by host enzymes. This allows the toxin to interact with its intracellular target, thus killing the cell or impeding cell growth. These toxins are highly potent protein synthesis inhibitors, specifically blocking the initiation of translation. In the case of YoeB, it binds to the 50 S ribosomal subunit in 70 S ribosomes and interacts with the A site leading to mRNA cleavage at this site. As a result, the 3'-end portion of the mRNA is released from ribosomes, and translation initiation is effectively inhibited.	7.97967e-49
NZ_CP018684.2\|WP_017191060.1\|9630_10128_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.25672e-07
NZ_CP018684.2\|WP_017191050.1\|2340_3108_+\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	5.88725e-54

>NZ_CP018684.2|WP_074052118.1|885_1713_+|hypothetical-protein
MKKLFSIISILFISYSFGEVAKADEYISCNKCSSADISSAADSWGLKNISELDSKKNIRKKVHIVDLVNLKSSSYLVSKKNSNGTFYIEKNRISPSEELKEKLDDVIQSKEEMNLMSSDLVIPKEVIKDPWEFVGCSYCVVDLQNFLNNSLQGQISQFNSAVQTLAYTFGLINGPYQQTFTLKFAGGGSTTFEVKQVTNTYDFVIIKILQVVDESGNEIPLNRANANFKSLRIPSHDRWQIINNYLWRYRLSIPPTDGGVVTVTECPLAPQHNCW
>NZ_CP018684.2|WP_017191050.1|2340_3108_+|ParA-family-protein
MKTKVISAANQKGGVGKTTTLVNLGAELARKRKVLVVDLDPQGNCTKTLTGERHFQFEETIAAMFDKPKVVSIADLIRPALVDGEPIQNLDVVPADFQLSRIIETSLTKINRERILDKQLARLGERYDFILLDTPPNLSLTTLNAIQASDLILIPVDSGAFSLDGISPLLEAVSEIKDDDANYLILRNEVDVRNTVINEFIEEELEVAKEKVLSVAIRRSEHVSQANAVSAPVRFYKAGSLVNNDYRKLAAMIVG
>NZ_CP018684.2|WP_017191051.1|3117_3414_+|hypothetical-protein
MAKLKARGAITIASSADKRDDKSQAITTVKKKVTTSYQVSPLTLRMSLKDKKSIAEWVNDLQDLSERNVSAAKLFRALALYRDNIDDEELIKIINKMN
>NZ_CP018684.2|WP_017191052.1|3623_3824_-|hypothetical-protein
MALIVGPKEKVGRDGGSFQEVELYAGTETVKYRYKKYCTIRDNEYAPPTSTSGRKWEQIFRTPDSE
>NZ_CP018684.2|WP_017191054.1|5162_5432_-|Txe/YoeB-family-addiction-module-toxin
MSSSQRLLSWTNDAWGDYLYWQTQDKKTLKRINKLINDTKRSPFEGIGKPEQLKENLSGFWSRRIDDTNRLVYAVDDQAITIISCRYHY
>NZ_CP018684.2|WP_017191055.1|5424_5679_-|type-II-toxin-antitoxin-system-prevent-host-death-family-antitoxin
MRIVSFTEARNGLKAVLDGVVNDADTTVITRRDSEDAVVMSLDYYNSLMETVHLLRSPQNVEHLNRSIAQYRAGKTTAQELIDE
>NZ_CP018684.2|WP_074052119.1|7587_8316_-|hypothetical-protein
MKKYLSLLMVITLSIVLSGCNGSSDSSSELAESYDGVYKDKNGESLFYNSNEDAIYLYRPPQQYKDGYISSSNRSIVVDNSLIGPYIDTNHFVKSELGDYYHYQNSTVQLHFSKGNVSALVKDEGDRTLVDTTYTKLPTLADFDLMYQSYADWERMTLIFSNDDRMFAQLDFMLTCQLNADVKKVSNFYRVSNGTITCNDPNDPRIDSNMHGVIYKVAEDSRAIVIVQGKRWTYRTTFQTVY
>NZ_CP018684.2|WP_017191058.1|8774_9134_-|hypothetical-protein
MDFLVGVDLQDSFVLGWHYNDQTLEIELEFSIWPESKYYEAPKIGEHTCYRLGSLLFEGVLSINGLLNQNDIQPIIDLDGSKDYGSIDYFEKNQSYFKVAGGFGNIEFESSGVHFKLRT
>NZ_CP018684.2|WP_017420534.1|9361_9634_+|DUF1778-domain-containing-protein
MATTLPRITARVDVDTQDLLTKAAAIAGMSSINSFVLSAAIEKAKQVIEREQALKLSQADAMLLMEALDRPATQNSKLKAAADRYESKTQ
>NZ_CP018684.2|WP_017191060.1|9630_10128_+|GNAT-family-N-acetyltransferase
MMNTVLLDKAKHDRNRFNCGIEALNNYLKVMASQQAKKDNTRTFVLEDDNDNSHVIGFYTLTMTPIDLKALPDKLQKKHQSSTSGGLIARLAVDDRYKGKGFGEWLLIDALRKLLAASDSVAFPVVIVDAKDGAKHFYERYGFQEFEEAENKLFITIADVRTSLG
>NZ_CP018684.2|WP_017819283.1|10273_10702_-|hypothetical-protein
MRFNYRSKKDNEDALWQLEVAKLYIDYAKYCSTLFSSFLAGQVTLLGTVFSELKSREFAVYAILLMVFAVISAYSIAETELRRLRGQEIDRDVPRYVILRKRFPNHTSVQTGKSFLTGVLVVSSISCYLYFLYLGNVVKLPL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018684_1	1.1\|2267\|38\|NZ_CP018684\|CRISPRCasFinder	2267-2304	38	NZ_CP018684	Vibrio harveyi isolate QT520 plasmid p3, complete sequence	2267-2304	0	1.0

1. spacer 1.1|2267|38|NZ_CP018684|CRISPRCasFinder matches to NZ_CP018684 (Vibrio harveyi isolate QT520 plasmid p3, complete sequence) position: , mismatch: 0, identity: 1.0

atgtaatacattgacgtttgcccaattgttcgatattt	CRISPR spacer
atgtaatacattgacgtttgcccaattgttcgatattt	Protospacer
**************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018680_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018680_1

2142803-2143041

Orphan

Consensus_repeat	Method
CCTCCTTAGCTCAGTAGGTAGAGCAACGGACTGATAATCC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP018680_1

>merge|NZ_CP018680|1|2142803-2143041|PILER-CR
CTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGTCACCAGTTCGATTCCGGTAGTCGGCACCATTCTTTTGCCTCGATAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCGGTGGTTCGATTCCGCCTCGAGGCACCATATTTGGTGCATTTGCTTAAAGCAAGACACAAAACAGAATAGTTCCTCCTTAGCTCAGTTGGTAGAGCGACGGACTGTTAATCCG

>NZ_CP018680|1|1|2142803-2143041|PILER-CR
CTTAGCTCAGTAGGTAGAGCAACTGACTTGTAATCAGTAGGT	CACCAGTTCGATTCCGGTAGTCGGCACCATTCTTTTGCCTCGA
TAGCTCAGTCGGTAGAGCAGAGGATTGAAAATCCTCGTGTCG	GTGGTTCGATTCCGCCTCGAGGCACCATATTTGGTGCATTTGCTTAAAGCAAGACACAAAACAGAATAGTTCCTCCTTA
GCTCAGTTGGTAGAGCGACGGACTGTTAATCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018680.2\|WP_005425804.1\|2134143_2134575_+\|DUF4426-domain-containing-protein	unknown	unknown	gnl\|CDD\|379616
NZ_CP018680.2\|WP_005448803.1\|2160319_2160625_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_CP018680.2\|WP_017187877.1\|2156431_2157187_-\|chitin-disaccharide-deacetylase	unknown	unknown	gnl\|CDD\|235007
NZ_CP018680.2\|WP_074050832.1\|2157204_2158527_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_CP018680.2\|WP_009698789.1\|2153934_2155185_-\|HD-GYP-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP018680.2\|WP_009697574.1\|2145893_2147330_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
NZ_CP018680.2\|WP_009697576.1\|2141081_2142221_+\|membrane-bound-lytic-murein-transglycosylase-MltC	unknown	unknown	gnl\|CDD\|183271
NZ_CP018680.2\|WP_005449658.1\|2143367_2144993_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP018680.2\|WP_005448805.1\|2161029_2161479_+\|type-III-secretion-system-chaperone	unknown	unknown	gnl\|CDD\|341100
NZ_CP018680.2\|WP_045480178.1\|2135301_2136474_+\|radical-SAM-family-heme-chaperone-HemW	unknown	unknown	gnl\|CDD\|235550
NZ_CP018680.2\|WP_005449665.1\|2138707_2139427_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP018680.2\|WP_009698790.1\|2155330_2156329_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP018680.2\|WP_005425805.1\|2133792_2134083_+\|YggU-family-protein	unknown	unknown	gnl\|CDD\|179931
NZ_CP018680.2\|WP_005425798.1\|2137667_2138696_-\|DNA-methylase	unknown	unknown	gnl\|CDD\|223971
NZ_CP018680.2\|WP_005436525.1\|2134680_2135283_+\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP018680.2\|WP_074050831.1\|2136644_2137565_-\|glutaminase-B	unknown	unknown	gnl\|CDD\|234880
NZ_CP018680.2\|WP_050922738.1\|2139630_2140707_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|182805
NZ_CP018680.2\|WP_005425792.1\|2140726_2140999_+\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP018680.2\|WP_029790579.1\|2158896_2160231_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|224372
NZ_CP018680.2\|WP_005448800.1\|2158537_2158849_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749

Protein	Function_ID	Function_description	E-value
NZ_CP018680.2\|WP_005425804.1\|2134143_2134575_+\|DUF4426-domain-containing-protein	gnl\|CDD\|379616	pfam14467, DUF4426, Domain of unknown function (DUF4426). Members of this entry are found mostly in g-proteobacteria, especially in Vibrio. Strangely enough, there seems to be one eukaryotic homolog in Nematostella vectensis (NEMVEDRAFT_v1g226006), where the PA0388-like domain is fused with a domain homogous to the Methionine biosynthesis protein MetW (see below). In several Pseudomonas species, but also in Vibrio vulnificus and Azotobacter vinelandii PA0388 homologs are genomic neighbors of Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) and Methionine biosynthesis protein MetW. On the other hand, in most Vibrio species it appears as a part of a conserved operon involved in possible response to stress.	2.05857e-68
NZ_CP018680.2\|WP_005448803.1\|2160319_2160625_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	1.45724e-45
NZ_CP018680.2\|WP_017187877.1\|2156431_2157187_-\|chitin-disaccharide-deacetylase	gnl\|CDD\|235007	PRK02134, PRK02134, chitin disaccharide deacetylase.	7.90827e-121
NZ_CP018680.2\|WP_074050832.1\|2157204_2158527_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CP018680.2\|WP_009698789.1\|2153934_2155185_-\|HD-GYP-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	6.04482e-71
NZ_CP018680.2\|WP_009697574.1\|2145893_2147330_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
NZ_CP018680.2\|WP_009697576.1\|2141081_2142221_+\|membrane-bound-lytic-murein-transglycosylase-MltC	gnl\|CDD\|183271	PRK11671, mltC, membrane-bound lytic murein transglycosylase MltC.	5.43341e-149
NZ_CP018680.2\|WP_005449658.1\|2143367_2144993_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	2.15682e-61
NZ_CP018680.2\|WP_005448805.1\|2161029_2161479_+\|type-III-secretion-system-chaperone	gnl\|CDD\|341100	cd16364, T3SC_I_like, class I type III secretion system (T3SS) chaperones and similar proteins. This family contains class I type III secretion system (T3SS) chaperones mainly found in Gram-negative bacteria such as Pseudomonas, Yersinia, Salmonella, Escherichia and Erwinia, among others. A wide variety of these bacterial pathogens and symbionts require a T3SS to inject eukaryotic host cells with effector proteins important for suppressing host defenses and establishing infection. Many of these effector proteins interact with specific type III secretion chaperones prior to secretion. These T3SS chaperones have been classified as class I type III secretion chaperones (T3SC), which are small structurally conserved dimers that interact specifically with T3SS effector proteins. Class I T3SC consists of two subclasses: IA and IB. Class IA T3SC binds a single effector, whereas class IB T3SC binds to several effectors. Class IA and Class IB T3SCs typically exhibit little sequence similarities, but share a common overall heart-shaped structure fold (alpha-beta-beta-beta-alpha-beta-beta-alpha) and features, such as a small size, an acidic pI and an amphipathic C-terminal alpha-helix. Chaperone protein CesT serves a chaperone function for the enteropathogenic Escherichia coli (EPEC) translocated intimin receptor (Tir) protein, which confers upon EPEC the ability to alter host cell morphology following intimate bacterial attachment. In Pseudomonas aeruginosa, chaperone ExsC binds small secreted protein ExsE as well as the non-secreted anti-activator protein ExsD; it relieves repression of the transcriptional activator ExsA (which activates expression of T3SS genes) by ExsD. P. aeruginosa SpcU binds the cytotoxin ExoU, which is a broad-specificity phospholipase A2 (PLA2) and lysophospholipase, and maintains the N-terminus of ExoU in an unfolded state which is required for secretion. Salmonella enterica chaperone SicP forms a complex with effector protein SptP at an early stage of its secretion process in order to avoid premature degradation, while chaperone SigE binds to effector SigD, which, upon translocation into the host cell, preferentially dephosphorylates specific inositol phospholipids that are thought to be crucial for subsequent activation of the host cell Ser-Thr kinase Akt. This family also includes Yersinia chaperone/escortee pairs SycE/YopE, SycH/YopH, SycT/YopT and SycN+YscB/YopN, all of which bind to specific Yersinia outer proteins (Yops). Also included are several DspF and related sequences from several plant pathogenic bacteria. The "disease-specific" (dsp) region next to the hrp gene cluster of Erwinia amylovora is required for pathogenicity but not for elicitation of the hypersensitive reaction. In addition, a group of proteins including Escherichia coli YbjN, Erwinia amylovora AmyR, and their homologs, are included in this family. They share a class I T3SC-like fold with T3SS chaperone proteins but appear to function independently of the T3SS.	8.74163e-21
NZ_CP018680.2\|WP_045480178.1\|2135301_2136474_+\|radical-SAM-family-heme-chaperone-HemW	gnl\|CDD\|235550	PRK05660, PRK05660, radical SAM family heme chaperone HemW.	0
NZ_CP018680.2\|WP_005449665.1\|2138707_2139427_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.32707e-107
NZ_CP018680.2\|WP_009698790.1\|2155330_2156329_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.72582e-111
NZ_CP018680.2\|WP_005425805.1\|2133792_2134083_+\|YggU-family-protein	gnl\|CDD\|179931	PRK05090, PRK05090, hypothetical protein; Validated.	1.0803e-59
NZ_CP018680.2\|WP_005425798.1\|2137667_2138696_-\|DNA-methylase	gnl\|CDD\|223971	COG1041, COG1041, Predicted DNA modification methylase [DNA replication, recombination, and repair].	1.72952e-08
NZ_CP018680.2\|WP_005436525.1\|2134680_2135283_+\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	3.57095e-123
NZ_CP018680.2\|WP_074050831.1\|2136644_2137565_-\|glutaminase-B	gnl\|CDD\|234880	PRK00971, PRK00971, glutaminase; Provisional.	0
NZ_CP018680.2\|WP_050922738.1\|2139630_2140707_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|182805	PRK10880, PRK10880, adenine DNA glycosylase.	0
NZ_CP018680.2\|WP_005425792.1\|2140726_2140999_+\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	9.88866e-59
NZ_CP018680.2\|WP_029790579.1\|2158896_2160231_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|224372	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism].	6.50117e-154
NZ_CP018680.2\|WP_005448800.1\|2158537_2158849_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	7.43721e-36

>NZ_CP018680.2|WP_009697576.1|2141081_2142221_+|membrane-bound-lytic-murein-transglycosylase-MltC
MKKIAFIATALLMAGCSREFVEKIYDVDYEPTNRFANNLAELPGQFEKDTDALDALINSFSGNIKKRWGQREVKFAGKSNYVKYIDNYLSRAEVDFQKGVITIETVSPTEPQKHLKNAIITTLLTPDDPANVDLFSSKEIKLEGQPFLYKQVVDQDKKPIQWSWRANRFADYLIANQVKTKDVDFKKAYYVEIPMVEDHFSQRSYQYADIVRRASKRYDIPEDLIYAIIKTESSFNPYAVSWANAYGLMQVVPKTAGRDVFKLVKNRSGQPSPEYLFNPENNIDTGTAYFYILKNRYLKDVQHPTSLEYSMISAYNGGTGGVLNTFHRTDRKRAMRDLNSLQPNQVYWALTKKHPNAEARRYLEKVTNFKKEFNSGHTL
>NZ_CP018680.2|WP_005425792.1|2140726_2140999_+|oxidative-damage-protection-protein
MSRTVFCARLKKEGEGLDFQLYPGELGKRIFDNISKEAWAQWQHKQTMLINEKKLNMMDPEHRKQLETEMVNFLFEGKDVHIEGYTPPSE
>NZ_CP018680.2|WP_050922738.1|2139630_2140707_+|A/G-specific-adenine-glycosylase
MTPFASAILEWYDAYGRKDLPWQQNKTAYSVWLSEIMLQQTQVTTVIPYYQRFLERFPTVVDLANAEQDEVLHLWTGLGYYARARNLHKAAKEVAHKYNGEFPLDLEQMNALPGIGRSTAAAVLSSVYKQPHAILDGNVKRTLSRCFAVDGWPGQKKVENQLWEIAETHTPQTDVDKYNQAMMDMGAMMCTRSKPKCTLCPVNEICIAKKQGNVLDYPGKKPKKDKPVKQTRFVMLHHKNGDSHEVWLEQRPQTGIWGGLFCFPQTEHIDVESDIELLLEQRGIQANDIKHQETLITFRHTFSHYHLDITPILIDLSKQPNVVMEGNKGLWYNLSKPEEVGLAAPVKLLLEALPHELR
>NZ_CP018680.2|WP_005449665.1|2138707_2139427_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MSEVTTNEYNEDGKMIRKIRSFVRREGRLTKGQENAMNECWPTMGIDYKAELLDWKEVFGNDNPVVLEIGFGMGASLVEMAKNAPEKNFIGIEVHSPGVGACLADAREAGITNLRVMCHDAVEVFEHMIPNGSLATLQLFFPDPWHKKRHHKRRIVQLEFAEMVRQKLILNEGIFHMATDWENYAEHMIEIMNQAPGFENIAEEGDFIPRPEERPLTKFEARGHRLGHGVWDIKFKRTA
>NZ_CP018680.2|WP_005425798.1|2137667_2138696_-|DNA-methylase
MYHYAILANPGHNRIYFDSAMTIACSELKAILASEGVEVTEIGNKDVGLPAALVFSCETELSEAQAGKIAASSIYYALFEVREDGLLRPIQAPAFNTFPESMSQILRYTGKTNEQFTRLMVNLGVSAANTGSAQLTLMDPMCGKGTTLFEGLIHGLNVVGVEINQKWVQEIQTFIVKFMKNGRFKHKVSKEKRTSGGKKVADGFVVEAAADKDDYNKGNLQTMKLYSADTRIADQVVKKNSVDVMVSDLPYGVQHGSKNAKDSKLNRSPLELLKEALPAWKVVLKKQGSVVLSFNEFTLKWKDVAALFEEQGWKVLSEEPYIGYLHRVDQSINRNIIVAIKP
>NZ_CP018680.2|WP_074050831.1|2136644_2137565_-|glutaminase-B
MKPTAQILTDILAEVRPLIGQGKVADYIPALAKVPNTKLGIAVYTNEGEVIKAGDAEESFSIQSISKALSLTLAMCLYKQEEIWCRVGKEPSGQAFNSMIQLEMEQGIPRNPFINAGAIVVADLLQSRLSAPRQRLLEFARQLSGDTHIVYDKVVAASEMMHGDRNAAIAYLMRSFGNFENEVIPVLQNYFHACALKMSCVDLAKTFSYLANKGTSVQTAKPVVSPTQTKQLNALLATCGLYDGAGEFAYRVGMPGKSGVGGGIIAVVPGEMTIAVWSPELDASGNSLAGTKALELLAERIGRSIF
>NZ_CP018680.2|WP_045480178.1|2135301_2136474_+|radical-SAM-family-heme-chaperone-HemW
MLTPPALSLYVHIPWCVQKCPYCDFNSHALKAEIPEEEYINALLEDLDTDIEKYRLNEAPRPLHSIFIGGGTPSLISAEGIERLLKGIEARIPFKPEIEITMEANPGTIEAERFVGYRKAGVTRISIGVQSFEQQKLERLGRIHGQDEAVNAAKLAHQIGLNSFNLDLMHGLPDQSIEQALADLDKAIELAPPHLSWYQLTIEPNTMFYYKPPTLPDDDDLWDIFEQGHEKLAAAGYVQYEISGYSKPGYQCQHNLNYWRFGDYLGIGCGSHGKLSFADGRIIRTTKVKHPRGYLMAYQNMVKPYLDSEQLVADEDRPFEFFMNRFRLMEACPKQDYIDTTGLPLSSIQETIDWALEMGYLSETETHWQITEKGKLFLNDLLEAFMAEEE
>NZ_CP018680.2|WP_005436525.1|2134680_2135283_+|XTP/dITP-diphosphatase
MKKIVLATGNQGKVREMADLLSDFGFEVLAQSEFNVSEVAETGTTFIENAIIKARHAAQETGLPAIADDSGLEVDFLKGAPGIYSARYAGEKASDQENLEKLLKAMEGVPEAERTARFHCVLVLMRHENDPTPIVCHGKWEGRILTEAHGENGFGYDPIFFVPEDNCASAELEPARKKQLSHRGKALKSLFAQLSEQVSQ
>NZ_CP018680.2|WP_005425804.1|2134143_2134575_+|DUF4426-domain-containing-protein
MSKWITALLISLLSLPSMAGQFKTMKDIEVHYIAFNSTFLTPKIARSYDIKRNGYNAVLNISVLDSASLGKPAVEAKISGQAKNLIGQTQKLTFREVKEGDAIYYLAELGITNEETFTFDIDVKAGNKGSGKLKFTQKFYVEE
>NZ_CP018680.2|WP_005425805.1|2133792_2134083_+|YggU-family-protein
MSEAVWHDGEDVVLRLYIQPKASRDKIVGLHGEELKIAITAPPVDGKANAHLTKFLAKQFKVAKGLVHIEKGELGRHKQIRIESPVQIPTEIKAII
>NZ_CP018680.2|WP_005449658.1|2143367_2144993_+|methyl-accepting-chemotaxis-protein
MKLKTQAYLLSAIILIALLALTATGLWTLRVASNLDNKARVTELFKSAYSILTEVEKMAVEGKMPEDEAKALATRLLRNNIYKDNEYVYVADENMIFVAAPLDPQLHGTSFHDFRDGDGNSVGQLILDVLGRKTGQIVEYTWTQKLPDGTIEEKHSIAEKTPHWNWVVGTGIGFNEVNARFWSTAQWQLALCLAIAGAILGGLIISIRKMLNLLGGEPNDVREAVQAVAQGDIQTSFEYTAPKDSIYGAVQEMSQSLAKMVTNLDESMHALRSELSAVESRSNSIADLTMSQQQSTAMIATAMTEMASSANHVASSASDTAQNTDEADKQSQHTQSLIHSTVDNIQGLATQLNTASKAVADLDQDVNSIVKVLDVIGDIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAGRTQDSTKEIQQMISNLQEGSRNAIHTMEICAETSESTVTESMNASEALQQIVTALESITAMSQQIATAAAEQTQVSDDIAHRINLIEESGSQLNTVVTESQSSTQTLASLADELEGWVNKFSVKH
>NZ_CP018680.2|WP_009697574.1|2145893_2147330_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MMQQIQSETLRVLFESLSSQDGIAVINPATEQELIRLKPSSLDELDVQIETCKAAQVEWEKLSAKVRSASLKKWFQLLVEHTEDIANIITLEQGKPLSESRGEVAYGASFVEWFAEEAKRAYGEVIPAPAVDRRLSTIKQPVGVCAAITPWNFPIAMITRKAAPALAAGCGMIIKPSELTPLTALAVVELAHQAGIPKALLSTVVSEQAAEFGLVLSTDPRIKKISFTGSTRVGKILMKQASDTVKAASMELGGNAPFIVFDDADLEAAANGLIASKFRNAGQTCVCTNRLYVHQNVKEAFLTKLLDKVTSLTVGNGLEKNTTLGPVITMASKHRLEAVIDQAVQEGAAMLNLPQKRSGRFMEPVILDNVEQGMAIVQQELFGPVLPVISFDDDEQVLSMANDTEYGLACYFYTDSLKRIIKFSEGLEYGMVGVNEGIISTEVAPFGGIKESGIGREGAKQGMDEYLETKYICLGGLS
>NZ_CP018680.2|WP_009698789.1|2153934_2155185_-|HD-GYP-domain-containing-protein
MAAIKLTVDRIQPGLHIRLPLKWNDHPFLLNSFKIKDQEQVEMIRHLGVKFVYFNPEQSDASPLPANQPQVEVTQDNTLDLEAQKLWKEKQKRIEKLSAYRRRVIQCEKEFERSLARMRSVMTKIRNRPVDAVGEAQQLIDDIVDKLMCDDNVTLHLMNGKNEFEDIYFHSLNVAVIAMMIGRAKGYSAEQLKALSFAALFHDMGKIKIPTAILRKQVPLTEPESNYLKLHTKYGLDMANQIEDFPDSAKTVIAQHHELRDGSGYPEGLKGDEIDELAQVIIVANAFDNLCHTSIAAEQKIPYTALSHLYKNCKHLYKEENLNILIKFMGVFPPGTVVQLSNNMVGLVISVNASHLLFPNVLVYDPAVPRTQAPIIDLASKDIKIVNAIHPSKLPEKIKEYLNPRSRISYFFDSDE
>NZ_CP018680.2|WP_009698790.1|2155330_2156329_-|LacI-family-DNA-binding-transcriptional-regulator
MARIKDVAELAGVNRSTVSRIINGEGKFREETRKKVEAAMAELNYRPSAIARSLATSSSNMVGLLVTYYTGGFFGEMMEQVQTELDMHKKFLITAQGHHSAEGEREAIQRFNDLRCDGYVLHSRYLSDDDLRELAKLPTPFVLLDRYVEGIEERCVTFNHHHASRIAVEHLIAGGHQKIVCIAGPSQRQNSLLRKRGYIDAVKTAGIDIDESWCEEGNYGRQSGYDAMAALYRRHPDLTAVFSCSEEMTVGAMQFLHEHRISVPKQISLVSFDSVDLCESLYPTVSAVHFPISDMARVAVQTLIGLIKEQPLMTQPEFEAQLKLRKADRIIT
>NZ_CP018680.2|WP_017187877.1|2156431_2157187_-|chitin-disaccharide-deacetylase
MKVIFNADDFGLTPGVNKGIIKAHQQGVVQSTTMMVGMDAERHAIELAKQNPNLNVGVHLRFTTGIPLTGHPNLTRGQTQFVSYDELWKIQDFEEEVVYQEAVAQVEAFLKLGLPLSHLDSHHHAHTHPQLLPVIRKVAQKYKVPLRGSGLCHIENSVKYYFTAEFYDQGVSLEGIMKHLLSLKAQYDVVEVMCHPAEADQSLLSKSSYAQQREVELQVLTSPVFKQELAQHGMAITDYSALVSSSGVASV
>NZ_CP018680.2|WP_074050832.1|2157204_2158527_-|6-phospho-beta-glucosidase
MPRNAIKLAIIGGGSSYTPELVEGVIKRLEFLPVKQMHFVDIESGAEKLEIIKGLAQRMIDKAGADIEIKAGFDRREAIKDADFVMTQFRVGGLTARANDERIPIKYDVIGQETTGPGGFAKALRTIPVILDICKDIEELSPHAWMLNFTNPAGLVSEAVSKYSNVKSIGLCNVPVSMEMMIAEMMDCEPKELQLEFAGLNHLVWVLKVWLKGEDVTQTVLEKVGDGANFSMKNIWEEPWDPAFLKALGAIPCPYHRYFYQTDAMLAEEKQSAGEQGTRAEQVMETESALFKLYQDPNLDHKPKELEERGGAYYSDASLNLVDAIYNNRNSIHVVNVLNNGAINGLPDSAVIECSAVIGSWGAKPLAVGELSSNIKGLLHQVKAYEQLAIEAAVEGSYEKALMALTNNPLVPDIGRAKSILDEILEVNAAYLPQFKLTTL
>NZ_CP018680.2|WP_005448800.1|2158537_2158849_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MEQELVVMEIICNAGEARSLSYEALRLSREKDFTAAEEKLSQAKECINKAHLIQTQLIEEDQGEGKVPMTLVMVHAQDHLMTTILAQEMAVEIVALNKQLAAR
>NZ_CP018680.2|WP_029790579.1|2158896_2160231_-|PTS-sugar-transporter-subunit-IIC
MKLYDAIIGIVEKHIAPIAAKVGNQPHVRAMRDGFIVAMPFIIVGSFILIFAFPPFAEDTTFALGRIWLDFATTHFDTIMMPFNMSMGIMTIFVSLGVAYSLAKAYKMDGITSAVLSLMCFLLVAAPAKDGALAMKHMGGTGIFTAVMCAFFAVELYRFMKKHNITIRMPEQVPPAIARSFEVLLPVLAVFLTLYPLSIFVQTQYDMLIPDAVMAMFKPLISASNTLPAIIGALLVCQLLWFAGIHGAAIVVGLLSPIFLTNISANIDAFVAGQPIPNVFTQPFWDFYIFIGGSGATLALVMLMSFSRSAHLKSIGRMSAVPGFFQINEPVIFGSPVVMNPILFIPFVFAPIVNATIAYFAVQLGFVGMGVATTPWTTPALIGASWGSGWTFSPVLLVIGLLILDLFIYLPFFKMFEKQVMEQELPTSKESKDAEQPSGEGVTA
>NZ_CP018680.2|WP_005448803.1|2160319_2160625_-|PTS-sugar-transporter-subunit-IIB
MKKILLCCSAGMSTSMLVKKMEQAAEKQGLECKIDALSVNAFDEAIKEYDVCLLGPQVRFQLEELRKTAQEHGKNIDAISPQAYGMMKGEEVLQQALELIN
>NZ_CP018680.2|WP_005448805.1|2161029_2161479_+|type-III-secretion-system-chaperone
MSTLIEQLFQELVTDLGIDTLQPNEDGHCTLMVDETLLLDIELDPKRERLILTSLVGPLSSQQGIKQLSSLMQFNKALYKELNMSLSLETHTASIVLTYSVDAGLCTVFDLESALSCFISQTEKCRHLLESTQEDSPPKNSMLNTAICV

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Crispr_ID: NZ_CP018680_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018680_2

3468495-3468656

Orphan

Consensus_repeat	Method
GCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTCCGCCATTTCCGCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018680_2

>merge|NZ_CP018680|2|3468495-3468656|CRISPRCasFinder
GCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTCCGCCATTTCCGCATATATTGTTTAGAGCATTTCAAGATGGTGCGGAAGGAGAGACTTGAACTCTCACACCTCGCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTCCGCCACTTCCGCAT

>NZ_CP018680|2|1|3468495-3468656|CRISPRCasFinder
GCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTCCGCCATTTCCGCAT	ATATTGTTTAGAGCATTTCAAGATGGTGCGGAAGGAGAGACTTGAACTCTCACACCTC
GCGGCGCCAGAACCTAAATCTGGTGCGTCTACCAATTCCGCCACTTCCGCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018680.2\|WP_009697741.1\|3456220_3458794_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP018680.2\|WP_005438595.1\|3463673_3465098_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP018680.2\|WP_005449255.1\|3469474_3470566_-\|redox-regulated-ATPase-YchF	unknown	unknown	gnl\|CDD\|236583
NZ_CP018680.2\|WP_009697740.1\|3455491_3456049_-\|luciferase	unknown	unknown	gnl\|CDD\|225527
NZ_CP018680.2\|WP_009696818.1\|3472290_3473163_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NZ_CP018680.2\|WP_005449251.1\|3473932_3475189_+\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP018680.2\|WP_074051125.1\|3454466_3455486_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
NZ_CP018680.2\|WP_005438598.1\|3470576_3471167_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP018680.2\|WP_005425552.1\|3462035_3462500_-\|rRNA-maturation-RNase-YbeY	unknown	unknown	gnl\|CDD\|234575
NZ_CP018680.2\|WP_074051127.1\|3476310_3477168_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP018680.2\|WP_005449241.1\|3477208_3477592_+\|SirB2-family-protein	unknown	unknown	gnl\|CDD\|225636
NZ_CP018680.2\|WP_005449254.1\|3471318_3472263_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP018680.2\|WP_005449249.1\|3475218_3476307_+\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP018680.2\|WP_005447495.1\|3462502_3463600_-\|PhoH-family-protein	unknown	unknown	gnl\|CDD\|224616
NZ_CP018680.2\|WP_074051126.1\|3465356_3466532_+\|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase	unknown	unknown	gnl\|CDD\|181564
NZ_CP018680.2\|WP_017818929.1\|3459471_3460992_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NZ_CP018680.2\|WP_005447499.1\|3458949_3459420_+\|zinc-ribbon-containing-protein	unknown	unknown	gnl\|CDD\|182915
NZ_CP018680.2\|WP_005425551.1\|3461029_3461929_-\|CNNM-family-magnesium/cobalt-transport-protein-CorC	unknown	unknown	gnl\|CDD\|226910
NZ_CP018680.2\|WP_005449252.1\|3473159_3473798_-\|lipoprotein-localization-protein-LolB	unknown	unknown	gnl\|CDD\|234578
NZ_CP018680.2\|WP_005449240.1\|3477597_3478407_+\|SirB1-family-protein	unknown	unknown	gnl\|CDD\|225464

Protein	Function_ID	Function_description	E-value
NZ_CP018680.2\|WP_009697741.1\|3456220_3458794_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP018680.2\|WP_005438595.1\|3463673_3465098_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP018680.2\|WP_005449255.1\|3469474_3470566_-\|redox-regulated-ATPase-YchF	gnl\|CDD\|236583	PRK09601, PRK09601, redox-regulated ATPase YchF.	0
NZ_CP018680.2\|WP_009697740.1\|3455491_3456049_-\|luciferase	gnl\|CDD\|225527	COG2980, RlpB, Rare lipoprotein B [Cell envelope biogenesis, outer membrane].	3.04084e-51
NZ_CP018680.2\|WP_009696818.1\|3472290_3473163_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	0
NZ_CP018680.2\|WP_005449251.1\|3473932_3475189_+\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NZ_CP018680.2\|WP_074051125.1\|3454466_3455486_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	3.40272e-137
NZ_CP018680.2\|WP_005438598.1\|3470576_3471167_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	4.57151e-107
NZ_CP018680.2\|WP_005425552.1\|3462035_3462500_-\|rRNA-maturation-RNase-YbeY	gnl\|CDD\|234575	PRK00016, PRK00016, metal-binding heat shock protein; Provisional.	9.25994e-68
NZ_CP018680.2\|WP_074051127.1\|3476310_3477168_+\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	1.27695e-135
NZ_CP018680.2\|WP_005449241.1\|3477208_3477592_+\|SirB2-family-protein	gnl\|CDD\|225636	COG3094, COG3094, Uncharacterized protein conserved in bacteria [Function unknown].	6.79605e-37
NZ_CP018680.2\|WP_005449254.1\|3471318_3472263_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP018680.2\|WP_005449249.1\|3475218_3476307_+\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP018680.2\|WP_005447495.1\|3462502_3463600_-\|PhoH-family-protein	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	7.60894e-169
NZ_CP018680.2\|WP_074051126.1\|3465356_3466532_+\|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase	gnl\|CDD\|181564	PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional.	0
NZ_CP018680.2\|WP_017818929.1\|3459471_3460992_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	0
NZ_CP018680.2\|WP_005447499.1\|3458949_3459420_+\|zinc-ribbon-containing-protein	gnl\|CDD\|182915	PRK11032, PRK11032, zinc ribbon-containing protein.	1.16617e-98
NZ_CP018680.2\|WP_005425551.1\|3461029_3461929_-\|CNNM-family-magnesium/cobalt-transport-protein-CorC	gnl\|CDD\|226910	COG4535, CorC, Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism].	1.57562e-162
NZ_CP018680.2\|WP_005449252.1\|3473159_3473798_-\|lipoprotein-localization-protein-LolB	gnl\|CDD\|234578	PRK00022, lolB, lipoprotein localization protein LolB.	8.00964e-76
NZ_CP018680.2\|WP_005449240.1\|3477597_3478407_+\|SirB1-family-protein	gnl\|CDD\|225464	COG2912, COG2912, Uncharacterized conserved protein [Function unknown].	3.08402e-97

>NZ_CP018680.2|WP_074051126.1|3465356_3466532_+|2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol-hydroxylase
MNKYDIAVIGGGMVGAAVAVGFAKQGRSVVMVEGAEPKAFEASQALDIRVSAISHQSVKLLDSLGAWSVIESMRVCPYRRLETWEHPECRTRFHSDELSLEQLGYIVENRLIQLGLWQIFAQYDNLTVMCPERLKDIEFAEVNRVMLESGEQFEASWVIGADGANSKVRQLAGIGVTAWDYRQHCMLINVKTELPQQDITWQQFTPSGPRSFLPLCSLAEDGKEVGQGSLVWYDSPKRIKQLCAMTKPQLKEEILRHFPAELGDIEVLQFGSFPLTRRHAQSYSNKNCVLVGDSAHTINPLAGQGVNLGFKDVDVLLSVTNQQEQLNDALLAKYERARRPDNLLMQTGMDVFYKGFSNDLGPLKFARNAALKLAENSGPIKAQVLKYALGM
>NZ_CP018680.2|WP_005438595.1|3463673_3465098_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MSKKLLIKTWGCQMNEYDSSKMADLLNAANGYELTEEPEEADVLLLNTCSIREKAQEKVFHQLGRWKTLKDKKPGVVIGVGGCVATQEGDHIRQRAPYVDVIFGPQTLHRLPEMIKQSQSDEAPVMDISFPEIEKFDRLPEPRAEGATAFVSIMEGCSKYCTYCVVPYTRGEEVSRPMDDVLFEIAQLADQGVREVNLLGQNVNAYRGPMHDGEICSFAELLRLVASIDGIDRIRFTTSHPLEFTDDIIAVYEDTPELVSFLHLPVQSGSDRVLTMMKRPHTGIEYKSIIRKLRKARPDIQISSDFIVGFPGETDKDFQDTMKLIKDVDFDMSFSFIFSPRPGTPAADYPCDLSEQVKKERLYELQQTVNAQAMRYSRLMLGTEQRVLVEGPSKKNLMELRARTENNRVVNFEGSADLIGQFVDVKITDVFANSLRGELVRTEKDMDLRSVISPTQMMAKTRREDELGVATFTP
>NZ_CP018680.2|WP_005447495.1|3462502_3463600_-|PhoH-family-protein
MSNKIVTLEINLEPSDNRRLASLCGPFDDNIKHLERRLGVEINHRSDLFTIVGKPHTAAAALDILKTLYVDTAPVRGETPDIEPEQIHLAIKESGVLEQNTESHFEHGKEVFVKTKKGVIKPRTPNQGQYLMNMVTHDITFGIGPAGTGKTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAFIILDESQNTTVEQMKMFLTRIGFNSRAVITGDVTQIDLPRGAKSGLRHAIEVLSEVDDISFNFFQADDVVRHPVVARIVNAYEKWEAQDQKERKEFEKRRREERDAKLLEAAKAELSAQVAATKE
>NZ_CP018680.2|WP_005425552.1|3462035_3462500_-|rRNA-maturation-RNase-YbeY
MAIELDLQLAVENEEGLPSEQDFQLWLDKTIPLFQPQAELTIRIVDEQESHELNHEYRGKDKPTNVLSFPFEVPPGMEMDLLGDLIICRQVVEKEAVEQNKPLLAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQGMGYEDPYIAEKE
>NZ_CP018680.2|WP_005425551.1|3461029_3461929_-|CNNM-family-magnesium/cobalt-transport-protein-CorC
MNEDNSPSSNEGKKEKAEGPSRKSFFERLGQLFQGEPKDRQELVDVIRDSEINDLIDHDTRDMLEGVMEISEMRVRDIMIPRSQMVTVERTDDLDTLIALITDAQHSRYPVISEDKDHVEGILLAKDLLKYLGSGSNPFDIEEVIRPAVVVPESKRVDRLLKEFREERYHMAIVVDEFGGVSGLVTIEDILEEIVGDIEDEFDDDEETDIRKLSKHTFAVRALTTIEEFNETFGTNFSDEEVDTVGGMVMTAFGHLPSRGEVVDIEAYSFKVTAADNRRVIQLQVTIPDEEKLVEATQE
>NZ_CP018680.2|WP_017818929.1|3459471_3460992_-|apolipoprotein-N-acyltransferase
MMNVLFHRLKRPLVAAFVGASTTLAFAPYQLWPLAILSPAILLILLADQSPRRALWIGYSWGLGQFATGVSWVYVSIAGFGGMPLIANLFLMGLLIAYLSIYTGLFAWLTNKFFPEFTLSKALLAAPALWLVTDWLRGWVMTGFPWLWLGYSQIDAPFASFAPIGGVELLTLFIMISAGALAYAWIHKQWLMIIIPAVLLSAGFGIRQYDWVTPRIEDTTKVALIQGNVDQNLKWLPSQRWPTIMKYADLTRENWDADIIVWPEAAIPAFEIEVPSFLRNIDTAAKMNNSAIITGVVNQGKDGQFYNSILSLGVNPYGDYSFDMDKRYHKHHLLPFGEFVPFEDVLRPLAPFFNLPMSSFSRGDFIQPNIVANGKHMDPALCYEIIFSEQVRQNVTDDTDFILTLSNDAWFGHSIGPLQHMEIARMRALELGKPLIRSTNNGVTAVTDHKGKVIEQIPQFETAVLRAELVPTDGQTPYRIVGTWPLYIWAGLSLMLAWWLSRKKKS
>NZ_CP018680.2|WP_005447499.1|3458949_3459420_+|zinc-ribbon-containing-protein
MPKRKAGYEEMLEDVIETLKHSPDEVNKVFETSGKVVDAANDMTKDELSLISAYVKADLKEFSDSYEEGKSGPFYLTIADSVWQGLLEITDRTKVEWVELFDDLEHQGLYEAGEVIGLGTLVCDECGHKTTYNHPTVIIPCIKCNHTGFSRQSLKP
>NZ_CP018680.2|WP_009697741.1|3456220_3458794_-|leucine--tRNA-ligase
MQEQYNPQDLEQKVQKHWDDNKTFVVSEDPNKEKFYCLSMFPYPSGRLHMGHVRNYTIGDVVSRFQRLQGKNVMQPIGWDAFGLPAENAAVKNNTAPAPWTYENIEYMKNQLKLLGFGYDWNREFATCTPEYYRWEQEFFTKLYEKGLVYKKTSSVNWCPNDQTVLANEQVEDGCCWRCDTPVEQKEIPQWFIKITEYAQELLDDLDKLEGWPEMVKTMQRNWIGRSEGVELKFEVKGQQDLEVYTTRPDTLMGVTYVGIAAGHPLATIAAENNPELAAFIEECKNTKVAEAELATMEKKGMATGLTAIHPLNGREVPVYVANFVLMDYGTGAVMAVPAHDQRDFEFATKYGLDIVPVIKPVDGSELDISEAAYTEKGVLFDSGEFDGLEFQAAFDAIAAKLEAEGKGTKTVNFRLRDWGVSRQRYWGAPIPMVTTEDGEVHPVPADQLPVILPEDVVMDGVTSPIKADKEWAKTTFNGEPALRETDTFDTFMESSWYYARYCSPQADDILDPEKANYWLPVDQYIGGIEHACMHLLYSRFFHKLLRDAGYVTSDEPFKQLLCQGMVLADAFYFENEKGGKEWVAPTDVKVERDGKGRITSATDNEGRNVEHSGMIKMSKSKNNGIDPQEMVDKYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVNEHTSKGAAEAVDAAALSGDQKALRRDVHKTIAKVTDDIARRQTFNTAIAAIMELMNKLAKAPQESAQDRAILDEALKAVVAMLYPITPHISYELWAALGEADIDNAVWPTFDEKALVEDEKTIVVQVNGKLRAKLTVAADATKEQVEELGLNDENVTKFTDGLTIRKVIYVPGKLLNIVAN
>NZ_CP018680.2|WP_009697740.1|3455491_3456049_-|luciferase
MRFFSLIKLPVVLVLAGLLSACGFHLRGEYSVPEELHTMSFTSYDEYSPLTRYIRAQLELNKVDLVQPSSSTPNLHLIEATIDERTLSLYQNSRAAEKELTYVVKYRVTIPGFGAKDFKTTVNRNYLDNPLTALAKSVERDVIEDEMRQQAASQMMRQLGRVRAEYEQGQPTPDVMKTNSTNTNS
>NZ_CP018680.2|WP_074051125.1|3454466_3455486_-|DNA-polymerase-III-subunit-delta
MRIFADKLADHLAKHIKQVYLIFGNEPLLIQESRQAIQTMAHQQGFEERHRFAVDASLDWNQVYDCFQALSLFSSRQLIELELPENGVTTTVSKELQTLCEMLHDDIMLVIVGSKLTKAQENAKWFKALSAKGDWVSCQTPDLQRLPMFVQARCRTLGLKADQQSLQMLAQWHEGNLFALSQSLEKLALLYPDGELTVVRLEEALSRHNHFTIFHWIDALLAGKANRAQRILRQLEAEGTETVILIRSVQKEFNQLLNMHRDLTQMGMSQVFEKHRVWQNKRPFYNAALTRLSASRICALLSLLTHAEIKAKTQYDESVWPTIHQLSLETCSPDIKLAI
>NZ_CP018680.2|WP_005449255.1|3469474_3470566_-|redox-regulated-ATPase-YchF
MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVVPVPDLRLDALAKIVNPQKVLPTTMEFVDIAGLVAGASRGEGLGNKFLANIRETDAIGHVVRCFENDNIVHVAGKVSPIEDIEVINLELAMADLDSCERAIQRNAKKAKGGDKDAKFELTVLEKLLPVLTEGGMARTVDLAKEELAAIGYLNFLTLKPTMYIANVNEDGFEDNAYLDAVREFAAKENNVVVPVCAAIESEMAELEDDEREEFLADLGIEEPGLNRVIRAGYELLNLQTYFTAGVKEVRAWTIPVGATAPKAAAKIHTDFEKGFIRAEVVGYDDFIQFNGESGAKDAGKWRLEGKEYIVKDGDVVHFRFNV
>NZ_CP018680.2|WP_005438598.1|3470576_3471167_-|aminoacyl-tRNA-hydrolase
MTQPIKLLVGLANPGPEYAKTRHNAGAWVVEELARVHNVTLKNEPKFFGLTGRIMVNGQDLRLLIPTTFMNLSGKAIAALAKFYQIKPEEIMVAHDELDLPPGVAKFKKGGGHGGHNGLRDTISKLGNNKDFYRLRIGIGHPGHKDKVAGFVLGKAPAKEQELLDAAADESVRCLDILIKDGLSKAQNRLHTFKAE
>NZ_CP018680.2|WP_005449254.1|3471318_3472263_-|ribose-phosphate-pyrophosphokinase
MPDMKLFAGNATPELAQRIADRLYISLGDASVSRFSDGEVAVQINENVRGSDVFIIQSTCAPTNDNLMELVVMIDAMRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSNVGVDRVLTIDLHAEQIQGFFDVPVDNIFGTPVLLEDMQSRGLENPVVVSPDLGGVVRARATAKALGDIDIAIVDKRRPRANVSEVMNLIGDVEGRDCVIVDDMIDTGGTLCKAAEALKERGAKRVFAYATHAVFSGNAADNIKNSVLDQVIVTDSISLSKEMAATGKVTTLSLSRMLAEAIRRISNEESISAMFN
>NZ_CP018680.2|WP_009696818.1|3472290_3473163_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MIDLSTRWPSPAKLNLFLYINGRTENGYHELQTLFQFVDHGDELTIQANDSGEITISPEIEGVPLQDNLIWKAATALQRYAKCSYGAHIDLHKILPMGGGIGGGSSNAATTLVALNYLWQTHLSDDELAEIGLALGADVPVFVRGFAAFAEGVGEKLSPAHPDEKWYLVVRPNVSIATADIFGHPDLTRNTPKRDLETLLNTPSVNDCEKIVRMLYPEVDKQLSWLLQYAPSRLTGTGSCVFAEFSSKSEAETILAQLSDKVSAFVAQGRNISPLKETLAEYQSASHRPI
>NZ_CP018680.2|WP_005449252.1|3473159_3473798_-|lipoprotein-localization-protein-LolB
MKLINKPSNMTLRSFLILLMSSIVLAGCSSVPESVTSVEWQAHEQRLETIKNFQATGKLGYIGPDQRQSLNFFWKHSSSLSQLRLTTLLGQTALKLTITPQGATVETYDDQVLSARDANQLIYRLTGLMMPVDHLPDWLLGLPTDADSFQLSPTNTLQALDKQIGLNDWNIAYQRYGDIEWHNQTLPLPNKLKLSTSDVKINLVITKWNITQ
>NZ_CP018680.2|WP_005449251.1|3473932_3475189_+|glutamyl-tRNA-reductase
MSLLAIGINHNTASVDLREKVAFGPDKLGPALEQLRDHEAVNGSVIVSTCNRTEVYCDVKQGARNKLIDWLAQFHQVSQEDLMPSLYVHEEQAAIKHLMRVSCGLDSLVLGEPQILGQVKQAFSDSRDHQAVDASIDKLFQKTFSVAKRVRTETDIGGNAVSVAYAACTLAKHIFESLSDSTVLLVGAGETIELVAKHLASNGCTKMIVANRTRERALGLAEQFGAEVISLNEIPDHLPRADIVISSTASPLPIIGKGMVETALKKRRHQPMLLVDIAVPRDVEAQVGELSDAYLYSVDDLQSIIDSNIEQRKVEAIQAEAIVSEESAAFMTWLRSLQAVDSIRDYRKSANEIREDLLSKSLQSLATGADPEKVLRELSNKLTNKLIHAPTRALQSAAEQGEPAKLTVIRQTLGLDDL
>NZ_CP018680.2|WP_005449249.1|3475218_3476307_+|peptide-chain-release-factor-1
MKASILTKLETLVERYEEVQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQDDLVAAEDMANEDDEEMREMAQEEIKEAKETIERLTDELQILLLPKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDLQSLIDPVVQEHQADQLAALAENN
>NZ_CP018680.2|WP_074051127.1|3476310_3477168_+|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MSQVQSIEQALKSATAILTEGGKESPSLDAAVLLCHVLGKPRTYLLTWPEKALDPEQQAQFDALLARRITGEPVAYIIGEREFWSLPLKVSPSTLIPRPDTERLVEVALDKTYEQTGPILDLGTGTGAIALALASELPKRQVMGVDLKHEAKDLAEYNASQLNIKNVTFDQGSWFEPIASGTKFALIVSNPPYIDEKDPHLAEGDVRFEPKSALVADENGLADIRHISDLARQYLEEDGWLAFEHGYDQGEAVREIMTHFGFEQVVTEKDYGGNDRVTLGCYKPS
>NZ_CP018680.2|WP_005449241.1|3477208_3477592_+|SirB2-family-protein
MYVALKHIHLVTIALSATLLSIRFVLLMMDSPKRNNRFLKVFPHIVDTALLLSGIGLIMVTGFIPFTDAAPWLTNKITCVLAYIALGFFALKMAKNKLLRIFAFFGALGWLVMAANIAVSKNPNLFG
>NZ_CP018680.2|WP_005449240.1|3477597_3478407_+|SirB1-family-protein
MLEFFDEDFDNMALVEGALELNHSINPDTNVHWAKQELERLYKEAEAILVHETDEEQRFDSFLRLFFYEWGFKGDDQEYFISDNSFIDKVLERKKGIPVSLGAVLLYLGNRLGFPMKGVTFPTQFLIKVDWMHKTPDYINPFNGEYVGEKILQAWLIGQEGPLATLKPEHFEEADNPTVIGRWLALIKSAMLREERYTLALRCTNLALTFVPDDPYEIRDRGFIFQQLECHQVAVSDFQYFIDQCPDDPASELLKSQVNAMSEKHVTLH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NZ_CP018680.2	2142490-2142532	0	1.0

1. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to position: 2142490-2142532, mismatch: 0, identity: 1.0

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccattctttt	Protospacer
*******************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NZ_LN868946	Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence	103819-103861	5	0.884
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NC_021742	Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence	35424-35466	5	0.884
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	296497-296539	6	0.86
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	KU052038	Escherichia phage SerU-LTIIb, partial genome	1162-1204	6	0.86
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	KU052038	Escherichia phage SerU-LTIIb, partial genome	3068-3110	6	0.86
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	LN997803	Escherichia coli phage phi467	15122-15164	6	0.86
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NZ_CP023526	Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence	1925-1967	6	0.86
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NZ_CP022660	Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence	52074-52116	6	0.86
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NZ_CP045061	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence	52080-52122	6	0.86
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NZ_CP045054	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence	52085-52127	6	0.86
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NZ_CP045058	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence	52084-52126	6	0.86
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	MH791411	UNVERIFIED: Escherichia phage Ecwhy_1, complete genome	13641-13683	6	0.86
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	MH494197	Escherichia phage CMSTMSU, complete genome	196768-196810	6	0.86
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NZ_CP054057	Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence	85813-85855	7	0.837
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	KY653118	Morganella phage IME1369_01, complete genome	694-736	7	0.837
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NC_049942	Escherichia phage JLK-2012, complete sequence	23522-23564	10	0.767
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	LC494302	Escherichia phage SP27 DNA, complete genome	76609-76651	11	0.744
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	LT603033	Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I	17115-17157	11	0.744
NZ_CP018680_1	1.1\|2142845\|43\|NZ_CP018680\|PILER-CR	2142845-2142887	43	NC_027364	Escherichia phage PBECO 4, complete genome	207828-207870	11	0.744

1. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to NZ_LN868946 (Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 4, complete sequence) position: , mismatch: 5, identity: 0.884

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatcaagtc	Protospacer
*************************************.   *.

2. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to NC_021742 (Serratia liquefaciens ATCC 27592 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.884

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagccggcaccaatcaagt	Protospacer
***************************.******** **   *

3. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcgg	Protospacer
************************************* . .

4. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcgg	Protospacer
************************************* . .

5. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to KU052038 (Escherichia phage SerU-LTIIb, partial genome) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcgg	Protospacer
************************************* . .

6. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to LN997803 (Escherichia coli phage phi467) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccatatgcgg	Protospacer
************************************* . .

7. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to NZ_CP023526 (Cedecea neteri strain FDAARGOS_392 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccagaatgcg	Protospacer
************************************   * .

8. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to NZ_CP022660 (Salmonella enterica subsp. enterica strain RM11060 plasmid pRM11060-2, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacga	Protospacer
************************************.*. .

9. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to NZ_CP045061 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p2, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacga	Protospacer
************************************.*. .

10. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to NZ_CP045054 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p2, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacga	Protospacer
************************************.*. .

11. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to NZ_CP045058 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p2, complete sequence) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccacttacga	Protospacer
************************************.*. .

12. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to MH791411 (UNVERIFIED: Escherichia phage Ecwhy_1, complete genome) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcacaaatcagcc	Protospacer
********************************** * **  ..

13. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 6, identity: 0.86

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcacaaatcagcc	Protospacer
********************************** * **  ..

14. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to NZ_CP054057 (Scandinavium goeteborgense strain CCUG 66741 plasmid pSg66741_1, complete sequence) position: , mismatch: 7, identity: 0.837

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgattccggtagtcggcaccaaatgcgg	Protospacer
************************************  . .

15. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to KY653118 (Morganella phage IME1369_01, complete genome) position: , mismatch: 7, identity: 0.837

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
agtaggtcaccagttcgactccggtagccggcaccatattaaa	Protospacer
******************.********.********* .*

16. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to NC_049942 (Escherichia phage JLK-2012, complete sequence) position: , mismatch: 10, identity: 0.767

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
atcaggtcgccagttcgattccggtagccggcaccatatgcgg	Protospacer
* .*****.******************.********* . .

17. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to LC494302 (Escherichia phage SP27 DNA, complete genome) position: , mismatch: 11, identity: 0.744

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
gaaaggtcaccagttcgattccggtagtcggcacaaaataaag	Protospacer
.. ******************************* *  .

18. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to LT603033 (Escherichia phage vB_Eco_slurp01 genome assembly, chromosome: I) position: , mismatch: 11, identity: 0.744

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
gaaaggtcaccagttcgattccggtagtcggcacaaaataaag	Protospacer
.. ******************************* *  .

19. spacer 1.1|2142845|43|NZ_CP018680|PILER-CR matches to NC_027364 (Escherichia phage PBECO 4, complete genome) position: , mismatch: 11, identity: 0.744

agtaggtcaccagttcgattccggtagtcggcaccattctttt	CRISPR spacer
gaaaggtcaccagttcgattccggtagtcggcacaaaataaag	Protospacer
.. ******************************* *  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

434895 : 444919

Mycobacterium_phage(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074050312.1\|434895_438171_+	DNA translocase FtsK 4TM domain-containing protein	A0A218M9A2	Mycobacterium_phage	5.2e-88	49.6
WP_005450808.1\|438232_438859_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_009699193.1\|438865_440215_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.9e-85	43.2
WP_005450806.1\|440307_441615_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	4.5e-91	43.0
WP_049536243.1\|441818_442721_+	DUF3380 domain-containing protein	A0A291LBS7	Pseudomonas_phage	1.3e-36	43.5
WP_017188206.1\|442710_443139_+	hypothetical protein	NA	NA	NA	NA
WP_005450802.1\|443276_443543_+	DksA/TraR family C4-type zinc finger protein	A0A1S6UBD1	Serratia_phage	1.1e-15	46.6
WP_009698192.1\|443641_444919_-	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	4.0e-20	25.4

DBSCAN-SWA_2

878159 : 889273

Vibrio_phage(91.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074050432.1\|878159_879890_+	response regulator	A0A1V0SGX0	Hokovirus	1.7e-42	32.3
WP_045489333.1\|880058_880427_-	antirepressor	Q9MCC3	Vibrio_phage	1.7e-32	59.5
WP_074050433.1\|880628_881249_+	3'-5' exonuclease	W6ASW5	Vibrio_phage	3.5e-38	48.1
WP_074050434.1\|881254_881527_+	hypothetical protein	NA	NA	NA	NA
WP_009697828.1\|881529_881745_+	hypothetical protein	A0A1W6UGD1	Vibrio_phage	3.8e-32	91.5
WP_074050435.1\|881728_882874_+	replication initiation factor domain-containing protein	Q783T8	Vibrio_phage	2.9e-203	88.5
WP_017190168.1\|882877_883234_+	DUF1293 family protein	Q783U4	Vibrio_phage	1.8e-58	96.5
WP_045487871.1\|883237_883465_+	hypothetical protein	Q783U3	Vibrio_phage	5.1e-19	60.5
WP_005445757.1\|883470_883713_+	hypothetical protein	Q783U2	Vibrio_phage	1.5e-21	79.0
WP_186293484.1\|884274_885372_+	hypothetical protein	Q783U1	Vibrio_phage	1.2e-92	65.9
WP_005445753.1\|885373_885718_+	DUF2523 domain-containing protein	Q783U0	Vibrio_phage	1.0e-42	74.6
WP_074050437.1\|885722_887108_+	toxin	Q783T9	Vibrio_phage	1.6e-227	81.3
WP_005445749.1\|887107_887266_+	hypothetical protein	NA	NA	NA	NA
WP_033008583.1\|887515_887761_+	hypothetical protein	NA	NA	NA	NA
WP_045488997.1\|888231_888483_+	hypothetical protein	NA	NA	NA	NA
WP_045488999.1\|888492_888816_-	hypothetical protein	NA	NA	NA	NA
WP_045489002.1\|888907_889273_-	phage protein	Q9MCC4	Vibrio_phage	1.1e-58	88.4

DBSCAN-SWA_3

2064667 : 2082377

uncultured_Mediterranean_phage(18.18%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074050818.1\|2064667_2067250_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.3e-78	37.9
WP_009703750.1\|2067392_2067860_-	recombination regulator RecX	NA	NA	NA	NA
WP_005436413.1\|2068066_2069110_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	3.1e-111	60.4
WP_009703950.1\|2069311_2069794_-	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	2.4e-26	47.5
WP_009698766.1\|2069879_2072441_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	9.8e-34	22.7
WP_005452115.1\|2072534_2073518_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.9e-36	35.2
WP_009698767.1\|2073598_2074522_-	peptidoglycan DD-metalloendopeptidase family protein	D7RWE0	Brochothrix_phage	2.4e-06	36.4
WP_005452113.1\|2074536_2075163_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.4e-37	53.9
WP_081384165.1\|2075162_2075939_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.4e-68	54.1
WP_074050819.1\|2075938_2076982_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_005425365.1\|2077027_2077504_-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_074050820.1\|2077518_2078229_-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	5.3e-06	23.2
WP_005452106.1\|2078230_2078512_-	cell division protein FtsB	NA	NA	NA	NA
WP_005425372.1\|2079357_2080659_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.5e-136	60.3
WP_005449808.1\|2080736_2082377_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	9.4e-155	51.9

DBSCAN-SWA_4

3303841 : 3310908

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005447719.1\|3303841_3305056_+	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	9.7e-32	30.2
WP_005424883.1\|3305093_3305477_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_005424893.1\|3305550_3305874_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.0e-25	51.4
WP_005447715.1\|3305929_3306445_+	co-chaperone HscB	NA	NA	NA	NA
WP_009702953.1\|3306466_3308320_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	3.6e-110	39.8
WP_005424889.1\|3308333_3308672_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_005424887.1\|3308716_3308911_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_050940961.1\|3309083_3310382_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	9.1e-36	34.7
WP_005440311.1\|3310482_3310908_+	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	2.7e-21	40.6

DBSCAN-SWA_5

3400137 : 3406821

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005447599.1\|3400137_3401277_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.9e-62	41.7
WP_074051115.1\|3401294_3402545_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.9e-99	48.5
WP_005424846.1\|3402672_3403122_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_009697719.1\|3403129_3404254_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	5.4e-45	35.7
WP_009697720.1\|3404265_3404919_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.1e-34	38.0
WP_074051116.1\|3405071_3406181_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.3e-64	40.1
WP_005440184.1\|3406350_3406821_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP018681

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018681_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018681_1

1012427-1012500

Orphan

Consensus_repeat	Method
TTAGTTACTTAGCTACTTAACCTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018681_1

>merge|NZ_CP018681|1|1012427-1012500|CRISPRCasFinder
TTAGTTACTTAGCTACTTAACCTACTTGGATATTGAGTTACTTGTTTACTTAGTTACTTAGTTACTTAGCTACT

>NZ_CP018681|1|1|1012427-1012500|CRISPRCasFinder
TTAGTTACTTAGCTACTTAACCTAC	TTGGATATTGAGTTACTTGTTTAC
TTAGTTACTTAGTTACTTAGCTACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018681.2\|WP_074051562.1\|1015623_1019280_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|237951
NZ_CP018681.2\|WP_050925466.1\|1026208_1028032_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NZ_CP018681.2\|WP_005449405.1\|1013872_1014472_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP018681.2\|WP_074051565.1\|1024492_1025323_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224048
NZ_CP018681.2\|WP_005449394.1\|1004704_1005427_-\|sulfite-exporter-TauE/SafE-family-protein	unknown	unknown	gnl\|CDD\|376667
NZ_CP018681.2\|WP_050938390.1\|1007615_1008338_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|223849
NZ_CP018681.2\|WP_074051560.1\|1000139_1002296_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|129864
NZ_CP018681.2\|WP_017819534.1\|1005782_1006316_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP018681.2\|WP_074051561.1\|1014476_1015631_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP018681.2\|WP_050938205.1\|1002604_1003138_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018681.2\|WP_005449400.1\|1010725_1011334_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP018681.2\|WP_005449393.1\|1003716_1004622_-\|EamA-family-transporter-RarD	unknown	unknown	gnl\|CDD\|225510
NZ_CP018681.2\|WP_074051566.1\|1028048_1029107_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226690
NZ_CP018681.2\|WP_005449396.1\|1006362_1007343_-\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|223905
NZ_CP018681.2\|WP_074051563.1\|1019614_1023550_-\|zinc-dependent-metalloprotease	unknown	unknown	gnl\|CDD\|239803
NZ_CP018681.2\|WP_005449392.1\|1003131_1003518_-\|MAPEG-family-protein	unknown	unknown	gnl\|CDD\|226311
NZ_CP018681.2\|WP_050558520.1\|1025322_1026195_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP018681.2\|WP_029789536.1\|1029109_1030135_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226642
NZ_CP018681.2\|WP_005449401.1\|1011330_1012218_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP018681.2\|WP_074051564.1\|1023618_1024458_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018681.2\|WP_074051562.1\|1015623_1019280_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	8.4014e-65
NZ_CP018681.2\|WP_005449405.1\|1013872_1014472_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.44253e-45
NZ_CP018681.2\|WP_074051565.1\|1024492_1025323_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	3.4762e-128
NZ_CP018681.2\|WP_005449394.1\|1004704_1005427_-\|sulfite-exporter-TauE/SafE-family-protein	gnl\|CDD\|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	1.76406e-16
NZ_CP018681.2\|WP_050938390.1\|1007615_1008338_-\|nitroreductase-family-protein	gnl\|CDD\|223849	COG0778, NfnB, Nitroreductase [Energy production and conversion].	4.23323e-24
NZ_CP018681.2\|WP_074051560.1\|1000139_1002296_+\|c-type-cytochrome	gnl\|CDD\|129864	TIGR00782, di-heme_cytochrome_cp, cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase. [Energy metabolism, Electron transport].	1.81919e-38
NZ_CP018681.2\|WP_017819534.1\|1005782_1006316_+\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	1.18514e-13
NZ_CP018681.2\|WP_050925466.1\|1026208_1028032_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	3.77316e-149
NZ_CP018681.2\|WP_005449392.1\|1003131_1003518_-\|MAPEG-family-protein	gnl\|CDD\|226311	COG3788, COG3788, Uncharacterized relative of glutathione S-transferase, MAPEG superfamily [General function prediction only].	1.82177e-36
NZ_CP018681.2\|WP_005449400.1\|1010725_1011334_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.35199e-43
NZ_CP018681.2\|WP_005449393.1\|1003716_1004622_-\|EamA-family-transporter-RarD	gnl\|CDD\|225510	COG2962, RarD, Predicted permeases [General function prediction only].	7.93967e-73
NZ_CP018681.2\|WP_074051566.1\|1028048_1029107_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226690	COG4239, COG4239, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.59648e-105
NZ_CP018681.2\|WP_005449396.1\|1006362_1007343_-\|chemotaxis-protein-CheV	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	2.02164e-48
NZ_CP018681.2\|WP_074051563.1\|1019614_1023550_-\|zinc-dependent-metalloprotease	gnl\|CDD\|239803	cd04276, ZnMc_MMP_like_2, Zinc-dependent metalloprotease; MMP_like sub-family 2. A group of bacterial metalloproteinase domains similar to matrix metalloproteinases and astacin.	7.5868e-31
NZ_CP018681.2\|WP_074051561.1\|1014476_1015631_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	4.29916e-84
NZ_CP018681.2\|WP_050558520.1\|1025322_1026195_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	7.00708e-154
NZ_CP018681.2\|WP_029789536.1\|1029109_1030135_-\|ABC-transporter-permease-subunit	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.15302e-106
NZ_CP018681.2\|WP_005449401.1\|1011330_1012218_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.70287e-18

>NZ_CP018681.2|WP_005449401.1|1011330_1012218_-|LysR-family-transcriptional-regulator
MNKDLDLNLLKILVLLERHRQLKPVAKALGKSEASISKYLTRLRTQLEDELFIRHAHHFEPTDYLKRKLPEITDALGQLESCLVRREFDPLSYEKSISICLPQSAQQSFGDLLLIDLMELFPNAYINVESSTDSTIDDILVDKVDMQLHYFNEEYPKTIHQQFIGYAPAVIVVPEELGINDLETACKLDFILLELAGWKDREQVTKRALEQSGININRVATIGNITSLLKVIRSKAAATILLEYQKPIEGYTFIPVPESFYPQGRPKVVIQMKQSHRYNSMHQLLTDAIAKYVIS
>NZ_CP018681.2|WP_005449400.1|1010725_1011334_+|response-regulator-transcription-factor
MNNVLIIDDQPLYSEALASLVQNAFQTVNVVESTDSAEVMELIRNQPVDLVILDVVLGDRDGMRLAKNILATGYQGRILFISSRDYSSLSKAAFEMGAHGFLNKNESKETIMDAIVSVTRGYSMFKATHNQSSGNVALSNREAMVFHYLAQGYSNKKISEQLSLSAKTISTYKTRILKKYHAESVVELLNTLPQDECGSLCC
>NZ_CP018681.2|WP_050938390.1|1007615_1008338_-|nitroreductase-family-protein
MSQSSFESIVHSRRSVRKYDTNAEFNHDDVAKALALTTLSPNSSNMQMWEFHRVISAEKRAKLADFCMGQNAAKTANELVVFVATTHNWEERAKRNAETVRQAFEGRDDAAAKRALKYYEKLIPMVYNNDAFGIRGVVRKLYSWWLGRNKPMVREVAKSDVRVCLHKSVSLAAMTFMFAMREKGYDTCPMEGFDSKRVKQLLNLRDSDQITMVISCGIRTEEGVYGERHRVDNEAVIKTH
>NZ_CP018681.2|WP_005449396.1|1006362_1007343_-|chemotaxis-protein-CheV
MSNVTSTILTESGTNELEIIEFHLEKQMPDGSTKTCYYGINVAKVREVIRVPETTDYPNAQPHMIGVFSSREVLTPLVDLAGWLGVPTRRDLERKFVIVTDFNKMTNGFLIDSISRIHRISWNDVESPSQFLEAGEQDCVVAVVRKDGNLIMILDFEKIIADINPELSMEKYDVTGDKSVDLNQRMVGKRNAKTVMVVDDSAFIRSLIQDTLASAGYNVITCKDGGEAYEKLMSLIEVAKQEQLPVRELLDAVVTDVEMPRMDGMHLVKRLRETEAYNEMPIVMFSSLMSEDNRAKALSLGANDTITKPEIGRMVNMMDKYVFNFA
>NZ_CP018681.2|WP_017819534.1|1005782_1006316_+|type-II-secretion-system-protein
MKRKSGFTLIELVVVIVILGILAVTAAPRFLNIQDDAREARLEGMKGAIASALAIGYGKMATAGLESVPYVSNKKTAYPATNLPFDGCKTSDSMQCTFLYGYPDADDHTIGLLIQGINESSNSDWKTFHHEAGSFTREMVIAPRDDPRASLTQCGILYGPPMSKNKSYKLEILPCPK
>NZ_CP018681.2|WP_005449394.1|1004704_1005427_-|sulfite-exporter-TauE/SafE-family-protein
MEFDSTNLLAMGLIFLGSYVQTAIGFGLAIVAAPLLILWAPEYVPAPICLVALFISLMNAMKHRSNVELGGLKMALIGRIPGSLAGGALLFYVSTEALTLWIGFLVLFAVAVSVLPFRIEPTPGRMTFAGFFSGLFGTSSAIGGPPMALLLQHQEANQLRGNLSAFFVFSSIISLVVQIPVGFFNLHHLIITLPLLPAAAFGYWLAIKTTQSLPKEKVRFGALALCFISGITAVIQGLAL
>NZ_CP018681.2|WP_005449393.1|1003716_1004622_-|EamA-family-transporter-RarD
MNNNRYGNFMAALSFVIWGLLPVYYRFLPNASMDELLALRIIGSVPVGFLLVLVITHHMPKWAAIWKDKKSLWYTFVASSLMCISWVAFTWALTNNRVIDASLGFFIGPLVSVALGVFVLGDKLSKGQFIAILLATIGVVYQVIQYGQLPLVALTMGLFFSLYGLFKKKINFDWSTTLFIEAVVLTPIALAYLMFKQWTIGELSSTVDMTTFMLYLGSAPVTILPLIFYSIAIRITNLSTVGLMQYIEPSLQFVLAVVFFGELFDSVKAVTFAFIWVGLLFTICEGIAKLSKRKKLANHSL
>NZ_CP018681.2|WP_005449392.1|1003131_1003518_-|MAPEG-family-protein
MVTALYASILALLLIWLAFQVIKQRRSNKIAYADGGVEALQIARSAQSNASEYVPITLILMALLEYNGASLLWIHLAGIVFVIGRVIHAKGILGEDLKGRITGMKLTFFTMIGLVALNLIYLPYGSLW
>NZ_CP018681.2|WP_050938205.1|1002604_1003138_-|hypothetical-protein
MVKKTTYLPPAWLLVFVGLVLNIAAIILTSVVLDKLGKEISLLAEQKADNLYSIQLAWNSVETLERKREVLLLHLHLAQSEPVSEEMNQVLRGHLSAWTGQEVSPIQIEQLPNLMSEINQAQNNYRNRIDSYYLANLETTEVMTGLEEKMAWYKSIGLFLQVFGLALILARDLARKP
>NZ_CP018681.2|WP_074051560.1|1000139_1002296_+|c-type-cytochrome
MSTFWNWWAVACTIIFFALMVSVIVKYWRSNHKADQDHTIASFDGIDEKDAPPPKLLFISYAVAFLLSAGYLVLYPGLGEWKGLVNYDQGNDKLSSPSTTLDQQFSQVTNTSLAVLAQNTDIVRTGRMLYQTHCAACHRDNAQGQKHFPNLIDKEWMYGGDDDAIIHSIAKGRNGAMPGWVEVMRKDEVNKVAYYLASLNQRHSDVPEVKVELGKRLFVEYCASCHGDGSIANQQTGVPDLSDSVWLHGGSIEEIQHTINYGLNNLMPAFENQLSENEILAIGAYIHKAGEEEEQKLSALNAESVERGEYLAHAGDCVACHSAEGGEPFAGGLPFVTPFGTIYSTNITPHASEGIGEYNYDDFRDALVKGKGKHGYLYPAMPYTSYQYLTEQDMTDLWEYMQSIPAVARRNDENHMMFPSNIRLGLLGWNIVFMDTDPIDYNLPSELEGVVEDVEKWQKGKYWVAGLGHCSECHTPRNIAQALIPERIFQGNLIDGWNAPDITSTELYVGGWDEKTLTDFLHTGHSDKGTAFAGMADVVKNSLSLMTREDIESMSYYLLSGDVNNFIAADAVPLEPKGFDEAAYQDPIYATYKQTCGACHGNDGKGRAPIAPTLLNNGIIMHSDPFNTIAVTVRGLQPTYIDPERNFMPMASFEDILSDARLAELITFVRRHLGDQQQEVTAADVREVRETLEAAGYAGGLHTTPDMYDRRDNTINIR
>NZ_CP018681.2|WP_005449405.1|1013872_1014472_-|response-regulator-transcription-factor
MMNKLNYLIFDDHPLVCIAIKSLVESLGTANDVLTVTNSKDALKILKEQQIGLLILDVNLADCDGYDFYKRIKSHGFAGKVIFFSAETSHMYSQMAFRSGADGYVCKSENHEILKDAIEAVSKGYSFFKFKQSVEEHRNVPALSSRESAVMKLLLQGKTNRDIADVLSISDKTVSTYKRRVLDKYNVKNIVELSKVLGT
>NZ_CP018681.2|WP_074051561.1|1014476_1015631_-|EAL-domain-containing-protein
MNKDLKAMVIDDHPLQITLLKQMLSRHGVDVSTFDNVDSAIQHVKTSDVDIIFCDLQMPNKDGVDMMMMLNQIGYQGKVVLVSAMELMIVATVRAMCESFSFEVLGKLLKPYDEEQVVEMLNKSGVQPAKFTSFQQQVCVQDQEFLFALAEGRVKNYYQPLADANTGEIIGYEALARWFHPIYGVLAPYNFLSIVKRCHLSAELFDAMFSNALYDMKNRGLRLHVSLNVDHDNLEDPEFATRFIERCREHGISPDQFTIEITERDTFETNAALYKNLLKFRMSGVTVSIDDFGTGSSSLEKLAQLPFNELKIDRSFIQGLVNDPKKKNIVLAICALAKSLNISVVAEGVEDEPTLNAMRQYTVDVCQGYYIDKPMPLEAITILK
>NZ_CP018681.2|WP_074051562.1|1015623_1019280_-|transporter-substrate-binding-domain-containing-protein
MFSILRKTVILFVAFIGTTSPSYSFASDESSETVLVGVIALRSEDPEIGNKIGTYYGINLDYLTNIAKVLNLELELRSYNTIPELFADIENGTIDGAVGFSKSPDRESRFIFSDAFFSSTIAVWYREDSYYQRDPRELQWVCVIGTVYCEYLEDMGATKVRTVESRLKAFEEVRGGRANALISSYVAINQYLDENDIVNGAVDIPSWLNEEESRFIASKSNQALVDRINKILSWERNGKNIRSVASTNPYHVNDKLLVEYRRDLENKQIITYSSSEEAFPFLFRNPHTDELDGFLPDFIDLIQSRTGLRFEYQKPSSSLNSGLTAFNADLVPVAYVENPPLSDWLVTKPFMHNNFVAIEALDPKEHPAHDARSGILMSLKKQGLVNLDSWKEERFTRYEDLRQLLTDLKQGKIEVAYIPDDIVHSMIAQDNIDGLLISEKDTLTLSIAFAVADHNTKLKKILDSIIDTIDAKEIEKLNRTYRNFNLVYGYDEEHIFTMILIVVVVFVILLAVAYFVLAHLKLKVNLAELNATNEEKEKQWLMEIIQEINSIVFIHGEDNQIQMSNCSLYKNHRCKGCTIQSRKSAKPLVDNVIELRQVIAGKRIADITASNGCKLGIQHVYRERKAILSPSSKKKFVLTVLQDITEQKEREFALIDAQEKAQTAVRSRENFLATMSHELRTPLSAAHGLLDLLDRQTSSEGSKELITQAMRSLNHLNLLVDEVLDYSKLEAGQLKVTPVKTHAVNTLCDVIRSFEPKASSKGLEYRVTFKPFLNPWLKVDAVRLVQIATNLLSNAVKFTNEGEISVSIAVHEGRLILKIADTGIGMTETQLEGILQPFVQADDTITRKYGGTGLGLSIVDRLVDCMGGELCINSQFGLGTTMVVKLPITFCEPEPQAALSYTFSPMLPANVRDWCLAWGMASTDVKPNLVGQFSPQGKYQGLNLDCGSKGSCELTPSEAKYPDTLLALLRQDCTLKPTAETEDTNSNLDWKHGTVLVAEDNPINQSVITMQLRELGIEPVIVSNGLEAWQYVNRDHQVALVLTDFHMPEMDGFELVKKLKAAPELASIPVIGVTAEDSRLANERAKHIGIDDILYKPYDLEKLRSKLLPFLGQEKMAQWPEWIEKFRKQDAKEIANVFKSSMTHDVANLKAATSKQDKKRIIHGIKGALGAIGVTILAELCIEAEKVSDGEFEVHVTDLIERIEQEINLAEHWIRAHE
>NZ_CP018681.2|WP_074051563.1|1019614_1023550_-|zinc-dependent-metalloprotease
MFRKTIIVASIAAGLSGCGAEDRAYDTVERSAKEVTVQSLDTESLWMYMPSTGEAPRYALTQRGFFQGDPKLVKLRFDETNGIYVEALDRDKVDSLEPSRWDSEINRVPVLKIPGEFRQYRCAENGYGECTNKEEINRDENVDWSTATHFIPDYENIESLSEDTLSTWYTASNVAESADPRVISYEYNPEEGVINVEIERTYTANPDDQYKFGGLENLSFKTRFFYSLVKLDKLASPNYKPVYYQGQDSAYYGFFNDSKAVKTHTGESDVQGSRFAYINRFNPNLESIDYYLSDTYFDEGNEVYRQLTIDTMKEVNESLEGTGVPPIRIVNTKEKAGIKSGDLRYNVFNLIDEPVDNGLLGYGPSATNPLTGEIIHAHVNQYLGVIRTTTRRYWDDLAMRYNRQEIAKLAPKDDTATDSGDADSGTAPVVAERTDIDVFNDMITADRGPDQFVPQVTEDEMAFVGEGTFVNEVPKADLDHKFDVDNKELALQTFYKRQDMLKRFSEQNVYSEDAMWLSTNAKGLISGIDYADGGYFADAKQNTMKKWSELSLEQQKLASEAISEHMFKSTLIHELGHNLGLRHNFMGSVDKAHFYTADELANSSLGHQAKPAAYSSIMDYGASIFDELLVFGKYDKAALKFAYAREIETNEFIGESVRDKTGAQVRKTYSLAEYDRKMSEDYNTYPTGVIAHLRANVGTDDIPELASYRFCTDEHTTTSLTCDRFDEGTSLTEITEFRIQRYYDSYETANRRNGRDFFSQYHQYEYFWQRMYEFQKIRDIVENVGEIDFVFARYIGANTTNNKGQVFEEIAENNCLDWRGNPKPLDSMSAGLRPICDTYNAANLAADFFLDVLTAPDKVCELEELSGIDGVPNRYRFAKLSDLWLTYQTGMSLNRDVPTSCFDEELVQILKKQANEIVMRSETRDGHIWSSLKANNPYQTASNSVDLLGVWPDKLLAAQMLVRRDSPYIATENSSLALIDLSDKITKLYTHLSDLAGRPEARQAIFVDGNGDYVETVLRYQPSLTQTIEAVPSYLWPMKRYFVMGGQEAFEYWTEGSPQDSVVPYFGTLLANLMKYNRANEYGLGDSVRGLSDSIAINLANSATADPNGINFTWKGMNYSLNSRNSLANAVASRALYQDEQKARVEKLNGLPYRVRNALSVFKNTRDRNEARIIAIGDKDALVALRDTTGFARFTMFDKMFEEYEEDGNKCLRFKVDGESDEDHMKRKCNSLTRLQTAQNSAIGKFEGDELEKMFDVAQIFGDQIAENNTSSLNASHKEVYDYDPEELRLWSSNEYVTYRRAFEQFPLYSD
>NZ_CP018681.2|WP_074051564.1|1023618_1024458_-|hypothetical-protein
MNKTKVLPILFLATPSFVLANNLNDEWDESDKKSAWSGYVSADYSRNGYEDSAYLANRSASATGVLRYAVSDKSRLQLVVSGYHQQDGDVYGTRGQFWNDTSLSWAYNGLLNPTEGSSVSGEIRAIFPTSKSSKRNDLQFGTRLKLRWSAAFDEWLDGLTLSNTVLLRKNFHEYKTAGGYQLIEYRLSNQFSVDYAFADDFYFNIFLMPRQSWNYQGNSLDPTILHGEEIGYQMTESISMSVGMTNSVGYYNPDKGQNPLNDLIDLKKMTYYAVVNYQF
>NZ_CP018681.2|WP_074051565.1|1024492_1025323_-|ABC-transporter-ATP-binding-protein
MAELLRIEGLKQYYLTGKGVFKKGYVIKAVDDVSFSLEQGQTLGLVGESGCGKSTLGRTILKLYEPTEGKIFFEGKEITHLNSKQMRPLRREMQIVFQDPLESLNQRHTVGGILEEPYKIHGIGTPAERKRWVLELLDKIGLPHTAVNRYPHEFSGGQRQRIGIARAIALKPKLLICDESVSALDVSVQAQILNLLLKIQKEMNLSIIFISHDLSVVKHISDHVAVMKKGKVVEMGTAKEVYSSPKNEYTKELLSAIPITHPSQRIKNTSQVANNY
>NZ_CP018681.2|WP_050558520.1|1025322_1026195_-|ABC-transporter-ATP-binding-protein
MKQQTVLKVRDLEVEFSTDEGTVKILKGVSFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGQITKGEIWYRDTDLTKMVERDLYQMRGNRISIIFQDPMTALNPVQTVGNQLVEVLDLHHSHMSKAEKVDYSIGLLEKVKIPMPELRFQEYPHNLSGGMRQRVMIAMALACKPDVLICDEPTTALDVTVQASILKLMKELQEETGMAMIFITHDLGVVAEICDDVAVMYDGRIVENADVFELFDYPKHPYTKRLLSLIPDSDSESKQAIQVVPIDLSLFPEYQGAS
>NZ_CP018681.2|WP_050925466.1|1026208_1028032_-|ABC-transporter-substrate-binding-protein
MYRFALISLLFSGLVQAGELPSDLQWQSNWQDPVFASDEAKRGGTLRSYMLSFPQTLRSVGPDANSGIRFYIMDGTPKLAQRHPNTGKWIPQLADEWAFSDDYKTAYFKLNPKVKWSDGEMVTADDYLFMLTYYRSKDIIDPWYNDFFRNTIASVEKFDDYTISITVSEPKSNDELMVLLNTPNHGLQPRPQHYFANINDQNGDGMDDNFVRKYNFKAEPTTSPYYISKINKGRSITFKHVGDNWWGYGNKYYQNRFNVDKLRIKVIRDSDIARKHFEKGKLDTFTMVLPQLWHEKTDSAPFAKGYIQKFWGFNQTSQGAGGLWMNTSMPLLSDINVRKGITFATDFDGMIKNVLRGDYSRKPHAMGYGHGDYDLPDAKAPAFEPELAIGYFEAAGFTNIGPDGIRVNKNGERLSFKITYGYNIWTPRIAYLKEQAKLAGLELNLNLVDGSAAFKYILEKKHQLAFLNMGGGELPAYKEYFHSSNANRVQTNNHTNYSSLELDREIEAFNSEFDADKKYQLSREIQKLISNAFVIVPGYMVPYTRDAHWRWVKYPNNPMTKKTGAMFNILGTSNFWIDTELKQQTQLAYKEGETFEPVTVIDERYRL
>NZ_CP018681.2|WP_074051566.1|1028048_1029107_-|ABC-transporter-permease-subunit
MSQLNLFTLNPLTRKQIKRFKEIKRGYWSLMLLSTLLILSLCAEVLINSKALVVRYQGEFFFPIFSDVYSGSNFGLDYAAETNYRDLRQNFEYENNGDFVLLPLVPWNAFEQDFSGSFPPNAPDFEAQHYLGTDVIGRDILARLVYGFRTAMGFALLTMSIAYVIGVTVGCAMGFFGGKFDLVVQRLIETWSMVPFLYVIMILVSIAQPTFMLFVLINVAFSWMGITWYMRTMTYKESAREYVLAAKALGASTARIIFHHILPNTMVMIVTLAPFTIAANITALTALDYLGLGLIPPTPSWGELLQQGKSNLDSPWIVVSVVTAIVSVLVMVTFIGEAIRTAFDPKKYTLYR
>NZ_CP018681.2|WP_029789536.1|1029109_1030135_-|ABC-transporter-permease-subunit
MVAYLLKRFALVVPTFLGITILIFAITRFVPGGPVERMLANMQPQGDGASVSAVVGQNSALSEEQLADLNKFYGLDKPVTEAYVDWLYRLVQFDLGESTRYYEPVTEMIFERLPVSAMYGGITFFISYFISIPLGYYKALKHGSVFDSVSSIMIFVGYALPGYVVGVLLITLFSYHLEWFPMGGFVDDDFDDFTTLSEQVTDILWHAVLPLICYLIGDFATLTMTMKNNLMENLSSDYIRTAIAKGLPFRQAIRKHALRNSLIPIASHFGNSLLFFMTGSFLIEVIFDINGIGLLGYESIVERDYPVVMGIVAINALVLLFGNILSDVCVALVDPRVKFGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018684

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018680

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP018681

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection