CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP017105	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence	0 crisprs	DEDDh,cas14i,csa3,RT	0
NZ_CP017102	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872a, complete sequence	0 crisprs	NA	0
NZ_CP017103	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872a, complete sequence	0 crisprs	NA	0
NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	0 crisprs	NA	0
NZ_CP017101	Rhizobium gallicum strain IE4872 chromosome, complete genome	1 crisprs	WYL,csa3,cas3,cas14i,c2c9_V-U4,RT,DEDDh	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017101_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017101_1

175220-175315

Orphan

Consensus_repeat	Method
TTCACGGCGATCCGAGTCGCGATCGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017101_1

>merge|NZ_CP017101|1|175220-175315|CRISPRCasFinder
TTCACGGCGATCCGAGTCGCGATCGAAATCCGGCAGGCGATCCCGACGATCGTCAAAGTCCCGGCGTCGTTCACGGCGATCCGGGTCGCGATCGAA

>NZ_CP017101|1|1|175220-175315|CRISPRCasFinder
TTCACGGCGATCCGAGTCGCGATCGAA	ATCCGGCAGGCGATCCCGACGATCGTCAAAGTCCCGGCGTCG
TTCACGGCGATCCGGGTCGCGATCGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017101.1\|WP_074066227.1\|163708_164752_+\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|380318
NZ_CP017101.1\|WP_022713250.1\|164855_165212_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP017101.1\|WP_028739374.1\|169646_171557_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP017101.1\|WP_156886356.1\|165499_165892_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017101.1\|WP_156886358.1\|178509_178923_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017101.1\|WP_074070111.1\|176197_177586_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|236379
NZ_CP017101.1\|WP_074066235.1\|178905_181896_+\|DNA-polymerase-I	unknown	unknown	gnl\|CDD\|235591
NZ_CP017101.1\|WP_074066233.1\|177677_178094_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP017101.1\|WP_074066237.1\|184347_184947_-\|phosphonate-metabolism-protein/1,5-bisphosphokinase-(PRPP-forming)-PhnN	unknown	unknown	gnl\|CDD\|226232
NZ_CP017101.1\|WP_074070112.1\|186094_186790_-\|DUF1045-domain-containing-protein	unknown	unknown	gnl\|CDD\|274483
NZ_CP017101.1\|WP_156886484.1\|166375_168046_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP017101.1\|WP_074066239.1\|186954_187572_-\|acetyltransferase	unknown	unknown	gnl\|CDD\|132351
NZ_CP017101.1\|WP_039843519.1\|165294_165501_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017101.1\|WP_074066240.1\|187568_188279_-\|phosphonate-C-P-lyase-system-protein-PhnL	unknown	unknown	gnl\|CDD\|227118
NZ_CP017101.1\|WP_074066232.1\|174354_174537_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017101.1\|WP_074066236.1\|182061_184341_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|224588
NZ_CP017101.1\|WP_074066231.1\|171835_174121_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP017101.1\|WP_074066230.1\|168425_169568_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757
NZ_CP017101.1\|WP_074066228.1\|165920_166262_+\|DUF2147-domain-containing-protein	unknown	unknown	gnl\|CDD\|378304
NZ_CP017101.1\|WP_074066238.1\|184943_186083_-\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|225985

Protein	Function_ID	Function_description	E-value
NZ_CP017101.1\|WP_074066227.1\|163708_164752_+\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|380318	cd02142, McbC_SagB-like_oxidoreductase, oxidase similar to the microcin B17 processing protein McbC. This family is the oxidase domain of NRPS (non-ribosomal peptide synthetase) and other systems that modify polypeptides by cyclizing a thioester to form a ring. These include EpoB, part of the epothilone biosynthesis pathway; TubD, part of the tubulysin biosynthesis pathway, MtsD, part of the myxothiozol biosynthesis pathway; IndC, part of the indigoidine biosynthesis pathway and TfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.	1.07306e-39
NZ_CP017101.1\|WP_022713250.1\|164855_165212_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.6543e-12
NZ_CP017101.1\|WP_028739374.1\|169646_171557_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP017101.1\|WP_074070111.1\|176197_177586_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|236379	PRK09104, PRK09104, hypothetical protein; Validated.	0
NZ_CP017101.1\|WP_074066235.1\|178905_181896_+\|DNA-polymerase-I	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	0
NZ_CP017101.1\|WP_074066233.1\|177677_178094_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.34176e-19
NZ_CP017101.1\|WP_074066237.1\|184347_184947_-\|phosphonate-metabolism-protein/1,5-bisphosphokinase-(PRPP-forming)-PhnN	gnl\|CDD\|226232	COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism].	6.88131e-75
NZ_CP017101.1\|WP_074070112.1\|186094_186790_-\|DUF1045-domain-containing-protein	gnl\|CDD\|274483	TIGR03223, Phn_opern_protn, putative phosphonate metabolism protein. This family of proteins is observed in the vicinity of other caharacterized genes involved in the catabolism of phosphonates via the3 C-P lyase system (GenProp0232), its function is unknown. These proteins are members of the somewhat broader pfam06299 model "Protein of unknown function (DUF1045)" which contains proteins found in a different genomic context as well.	3.75156e-88
NZ_CP017101.1\|WP_156886484.1\|166375_168046_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	9.83312e-108
NZ_CP017101.1\|WP_074066239.1\|186954_187572_-\|acetyltransferase	gnl\|CDD\|132351	TIGR03308, phn_thr-fam, phosphonate metabolism protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.	3.02344e-114
NZ_CP017101.1\|WP_074066240.1\|187568_188279_-\|phosphonate-C-P-lyase-system-protein-PhnL	gnl\|CDD\|227118	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	4.5198e-139
NZ_CP017101.1\|WP_074066236.1\|182061_184341_+\|DNA-translocase-FtsK	gnl\|CDD\|224588	COG1674, FtsK, DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning].	1.04154e-180
NZ_CP017101.1\|WP_074066231.1\|171835_174121_-\|penicillin-binding-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	0
NZ_CP017101.1\|WP_074066230.1\|168425_169568_-\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0
NZ_CP017101.1\|WP_074066228.1\|165920_166262_+\|DUF2147-domain-containing-protein	gnl\|CDD\|378304	pfam09917, DUF2147, Uncharacterized protein conserved in bacteria (DUF2147). This domain, found in various hypothetical prokaryotic proteins, has no known function.	4.28523e-12
NZ_CP017101.1\|WP_074066238.1\|184943_186083_-\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	gnl\|CDD\|225985	COG3454, COG3454, Metal-dependent hydrolase involved in phosphonate metabolism [Inorganic ion transport and metabolism].	0

>NZ_CP017101.1|WP_074066232.1|174354_174537_+|hypothetical-protein
MSIDLKRIDETCLREIWSIHEFARQHRLSKMEESRLKMLHGPFAEMRELVAVSDRKASVW
>NZ_CP017101.1|WP_074066231.1|171835_174121_-|penicillin-binding-protein
MAGRGRSRDRIEPSFSGRSRFEEDDDFSLDDADRIAGRRGTKRSSSDATRTRAPDRKRRSRREPPERQDGGLFSFVRRVVYWCIVLGIWAGIGAAGLVFYYGSRMPSASTWAIPERPPNVKITSVDGSVIANRGATGGEALSLDQMSPYIPEAIIAIEDKRFYSHFGVDPMGLARAVVNNLTGQPIQGGSTLTQQLAKNLFLSPDRTLERKVQEVLLSFWLEQKYTKDQILAMYLNRVFYGSNAYGVEAAARRYFNKSARDVNLGEAALLAGLVKAPSRLSPARDPDAANARAQVVLQAMRDQGYITDNEVKTAMTQTPSKAKSYWSGAGQYVADMVMDELPGLVGEVKEDLIVDTTIDKGLEKKAEQSLNDILGKDGTKLDASQAALVSIDGTGAIRALVGGRDYAVSQFNRAVKAKRQPGSSFKPFVYAAALEKGLTPYSVFNDAPIRIGNWTPENYEKKYNGEVTLATAFAKSLNTVAAQLVMYDGPEQVIKLAHRLGIETELQPNASIALGTSEVSLTELTASYAAFMNGGYKATPHVIRRVTTAEGKVLYENTYDNPPRVVSETVAANMNAMMMGTIETGTGKSAKIPGWQAAGKTGTTQNSRDALFVGFTSNLTTGVWFGNDDGTPMKKVTGGGLPAKAWQEFMIAAHKGLSPAPLFGNGQFIADPNGFGNQPMAQAEPQPMQEQPTTIGGIISGVFGSGNSTEAQTSFPPAPGQQQQAVAVPGGPIPPGDVGSPAATSSVQPRRTTLLDLIMGQ
>NZ_CP017101.1|WP_028739374.1|169646_171557_-|molecular-chaperone-DnaK
MAKVIGIDLGTTNSCVAVMDGKDAKVIENAEGARTTPSMVAFTDDGERLVGQPAKRQAVTNPTNTLFAVKRLIGRRYEDPTVEKDKGLVPFSISKGDNGDAWVEANGKGYSPAQVSAMILQKMKETAESYLGEKVEKAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKEGKTIAVYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVEYLVAEFKKDNGIDLKNDKLALQRLKEAAEKAKIELSSSQQTEINLPFITADASGPKHLTLKLTRAKLESLVDDLVQRTIAPCKAALKDAGVTPAEIDEVVLVGGMSRMPKVQEVVKQLFGKEPHKGVNPDEVVALGAAIQAGVLQGDVKDVLLLDVTPLSLGIETLGGVFTRLIERNTTIPTKKSQTFSTADDNQQAVTIRVSQGEREMAADNKLLGQFDLVGLPPAPRGVPQIEVTFDIDANGIVQVSAKDKGTGKEQQIRIQASGGLSDADIEKMVKDAESHAAEDKKRRETVEAKNQAESLVHSTEKSLKDYGDKVSEADRTAISDAIAALKSAAEATDPDAEDIKAKTQTLMEVSMKLGQAIYEAQQAEAGTADASAGDDNVVDADYEEVKDDDRKKSA
>NZ_CP017101.1|WP_074066230.1|168425_169568_-|molecular-chaperone-DnaJ
MAKADFYETLGVAKTADEKELKSAFRKLAMKYHPDKNPDDKSAEIKFKEINEAYETLKDPQKRAAYDRYGHAAFEHGGMGAGGFGGGAGFAGGGGFSDIFEDIFGEMMGGGRGRQRSSGGRERGADLRYNMEISLEEAFSGKTAQIRVPTSITCDMCSGSGAKPGTQPKTCGTCQGSGRVRAAQGFFSIERTCPTCHGRGQIIPDPCPKCHGQGRVTEERSLSVNIPAGIEDGTRIRLQGEGEAGTRGGPAGDLYIFLSVKPHEFYQRDGADLYCAVPISMTTAALGGTFDVATLDGTKSRVTVPEGTQAGKQFRLKGKGMPVLRSSQTGDLYIQIQIETPQKLSKRQRELLQEFEQLSSKENNPESTGFFARMKEFFEG
>NZ_CP017101.1|WP_156886484.1|166375_168046_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MGEIAALPLGFATLCTSVFHRQCNHCDHSRQGRMPHLQDCPMPNRLDSDLTDRRQSVIWIGFFAMCIGMFMAILDVQVVATSLPTIQAALDIDPEQMSWIQTVYLIAEVVAIPLTGFLTRFLTMRWLFVTSLVLFVIASAGCAISSGFRELVAWRVLQGFSGGTLIPSVFSAVFILFPNERQALATTIAGVLAVLAPTVGPIVGGWLTETYSWHWLFLINIIPGILAALVAMRSLPQERVDVWELRGLDGVGLVTMAVALITLELGLKEAPTSGWMSAYDSGLFAVSALSALAFIWRSLHRARPLVELHNFQDRNFMVGSTLSFILGFGLFGSVYLMPVFLAFVRGHNAFEIGMTMLVTGIAQLCTAPIAVALEKRMDPRLLSAVGFALFAIGIGMSASQNPRSDYDAMFWPQIIRGVSIMFCLLPPTRLALGTLPPERVPDASGLFNLMRNLGGAIGIALIDTILYTRSEPLGQKLWDRLQAGNLEAAEFIGAPAQIVPGHTGAFDADTTAILNPLVQTAATVQALNEAWMMVAIITACAVICLPFAKPVLPTQS
>NZ_CP017101.1|WP_074066228.1|165920_166262_+|DUF2147-domain-containing-protein
MTIRTVFVTIFILIASVASGADTVVGTWKTENGETSVIDHCGANYCIVAKSGRYAGQQIGFFSGRADTYTGRLTDPRTKTIYSGRLTVSGNSLKLRGCATSVLCKTQIWTRLN
>NZ_CP017101.1|WP_156886356.1|165499_165892_+|hypothetical-protein
MEVTFNWFVPQNYAGSSDGISAGCKRHPQPALTQDVLPVFSVSNWNRNGGSTERFWIRVVLRHAAMCRVAVYRLSAAPKLGSKAARVLRSRPAWGSSDQKSRSVATVRALTFCTIAYQKSEELDDAIAVT
>NZ_CP017101.1|WP_039843519.1|165294_165501_-|hypothetical-protein
MTAAASLSFQPDDVDVLAGALYTWCAERNIKLRSQQGLSIASIAIDLYHAGHHTQDDLLVALHERELH
>NZ_CP017101.1|WP_022713250.1|164855_165212_+|helix-turn-helix-transcriptional-regulator
MPDPVDILVGRNVRQLRARRRVSQLELGEALGLTFQQIQKYEKGTNRVSASKLHQIAVFLGVEISALFEGAETSQFPSKVALSPEAYELAVNYDRLHSPAGKEAVKTILTLMSAEKAA
>NZ_CP017101.1|WP_074066227.1|163708_164752_+|SagB/ThcOx-family-dehydrogenase
MRYRSSRTLVFHNDGAEFVACNFLTKAVFECSPDLLDFLRAIAEWSDRAAIRDQAPGHSEDELDETLVALVEMSALVVEGSELEMREEAFRQHWKWGVPAALMHFCVQDPDYMSLNEAEDLQRAALASDGEIELYSLNSGQGDVISLSAEPSGNSLLELMARRRTQRKGLTKAVSLHALSEALFAGLGITGTARNSVVTLPLSMTPSGGARNPYEAYVFVKAVDGLAPGIYHYSAFEHSLAKISDASPSFGDLVGGQEWADTMPCMIVLVAHMDRSMWKYSDANAYRVVLIEAGHIGQNIMLSATAHGMTACPTAALSHTRIGELVGLRNPAHAPIYALTLGFPDVA
>NZ_CP017101.1|WP_074070111.1|176197_177586_-|M20/M25/M40-family-metallo-hydrolase
MTDVTPVLSRADQNLGSSLDRLFELLRIKSISTDPAYKVECRTAAEWLVAYLKTLGFEASVRDTPGHPMVVAHHAGASADAPHVLFYGHYDVQPVDPIELWENDPFEPAVKDMSNGRKILTGRGTADDKGQLMTFVEACRAYKEVNGALPCRVTILFEGEEESGSPSLKPFLEANAAELKADYALVCDTGMWDRETPAIAATLRGLVGEEVVVTAADRDLHSGLFGGAAANPIHVLTTALAGLHDETGRITLANFYEGVEETPANIKASWEKLGQTAEDLLGQVGLSVPSGEKGRSVLELTWARPTAEVNGIWGGYTGEGFKTVIAAKASAKVSFRLVGKQDPAKIRETFRNYVRSKIPADCSVEFHPHGASPAIHLAYDSPVITKAKNALSDEWPKPAVVIGMGGSIPIVGDFQKMLGMESLLVGFGLADDRIHSPNEKYELASYHKGIRSWVRILDALAA
>NZ_CP017101.1|WP_074066233.1|177677_178094_-|MarR-family-transcriptional-regulator
MDSGAYLASQLAKGFARSLQQRAARLGFSPGQFPILLELWAEDGLTQKQLLERVDIEQATMANTLARMARDGLIERRPHPSDKRAQLIFLTPNARAIEDEAVKIAREADLALFQGFKTFERELMLEYIRRLLENAKKI
>NZ_CP017101.1|WP_156886358.1|178509_178923_-|hypothetical-protein
MIAFFHGCMDSVTEWKRPLHMQFAVLFIADPSPSERAAYGKAQVRGRLCRTMAVVIAGSYTRRPYGCLSQSALRAGVPAGDQGLRTFFPQHLDRIRSFGSQAEFQLLNALLLSAVLISVGSYEAPWHHCADLRPLEA
>NZ_CP017101.1|WP_074066235.1|178905_181896_+|DNA-polymerase-I
MKKGDHLFLIDGSGFIFRAFHALPPLTRKSDGLPVGAVSGFCNMLWKLLTDARDTSVGVTPTHLAVIFDYSAKTFRKDLYDAYKANRSAPPDELIPQFGLIREATRAFNLPCIETEGFEADDIIATYARQAEGTGADVTIVSSDKDLMQLVTPNVHMYDSMKDKQIGIPDVIEKWGVPPEKMIDLQAMTGDSVDNVPGIPGIGPKTAAQLLAEYGDLDTLLDRAHEIKQEKRRQAILENGDKARLSRELVRLRSDVPLVLGLDDLVLEVQNGPKLIGFLKALQFTTLTRRVAEACNCDASAIEAADVKVEWGTAAHGPDLDAAEPEPVAGGIPDVEGAAVPIPVKAKPAGKGFTPAELAKARAEAFAVLPFDHSTYVTIRDLATLDKWIGDARATGLVAFDTQTNSLDAMQAELVGFSMAIADNDKNPAGVKTRAAYLPIGHKNGVSDLLGGGLADNQIPMRDVLPRLKALLEDESVLKVAQNLKYDYLLMKRYGVETKSFDDTMLMSYVLDAGTGAHGMDSLSEKFLGHKPIAYKDIAGSGRANVTFDLVDIDRAKHYAAEDADVTLRLWMVLKPRLAAAKLTAVYERLERPLLPVLARMEERGITVDRQILSRLSGELAQGAARLEDEIYALAGEKFTIGSPKQLGDILFGKLGLAGGSKTKTGQWSTSASVLEDLAAAGFELPRKIVDWRQLTKLKSTYTDALPGYVHPQTKRVHTSYSLASTTTGRLSSSEPNLQNIPVRTLEGRKIRTAFISTPGHKLISADYSQIELRVLAHVAEIPQLTQAFAEGIDIHAMTASEMFGVPVDGMPAEVRRRAKAINFGIIYGISAFGLANQLSIERSEAGDYIKKYFERFPGIRDYMDSRKQMARDKGYVETIFGRRINYPEIRSSNPSVRAFNERAAINAPIQGSAADVIRRAMIKIEPALAEAGLADRVRMLLQVHDELIFEVEDADVEKAMPIIVSVMENAAMPALEMRVPLKVDARAATNWDQAH
>NZ_CP017101.1|WP_074066236.1|182061_184341_+|DNA-translocase-FtsK
MRFPRTNLTDAGDFSSEIDVQHAGDDMNVAPAAPVWQSNFSLAPNVRFTRTPENLISKRRAPAESEQSSREETVSEGPAVDVEPSAPMMIDVPFDIYLPEAAPSVSEIDHPEHVAEIQVEPELRASSELTDISDFAFWEVMAFEEATAAPITLPVAFLPKVEVTPESIIQHFRVMEWRPGGRPQKPDAPATATAAPAPVRSISNVAPAARPAASPVTAKTQPIAPMPVRVQAAAPLAPAPRAVTQKTIPANIDPSGYEFPPRSLLQEPPERLGEIMPQETLEQNAGLLESVLEDFGIKGEIIHVRPGPVVTLYEFEPAPGVKSSRVIGLADDIARSMSALSARVAVVPGRNVIGIELPNAMRETVYFREMIESQDFEKSGYKLALGLGKTIGGEPVIAELAKMPHLLVAGTTGSGKSVAINTMILSLLYRMTPEQCRLIMVDPKMLELSVYDGIPHLLTPVVTDPKKAVMALKWAVREMEERYRKMSRLGVRNIDGYNGRVAQAREKGETVHIMVQTGFDKGTGAPIEEQQEMDLTPMPYIVVIVDEMADLMMVAGKEIEGAIQRLAQMARAAGIHLIMATQRPSVDVITGTIKANFPTRISFQVTSKIDSRTILGEQGAEQLLGQGDMLHMQGGGRISRVHGPFVSDLEVEKVVAHLKTQGRPEYLETVTADEEEDAEPEEGAVFDKSAIASEDGNELYDQAVKVVLRDKKCSTSYIQRRLGIGYNRAASLVERMEKEGLVGPANHVGKREIVSGREE
>NZ_CP017101.1|WP_074066237.1|184347_184947_-|phosphonate-metabolism-protein/1,5-bisphosphokinase-(PRPP-forming)-PhnN
MIPSHEPHLVPGTERGIMVVVVGPSGAGKDTLINLAAKHFAGRPDVHFVRRVITRDRDAGGEDHLSVSDGGFVSMEQSGNFAVWWEAHGLKYGIPAEVSVALAKGHLVIANGSRSALHLFQAVFPRLKVINVTARPEVLAGRLEARGRETHEDIMARLARGPLTVRGDYDVTELDNSSSLEEAGRKIIETLNGFLTKIS
>NZ_CP017101.1|WP_074066238.1|184943_186083_-|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase
MTTETVLSNARIVLEDEIVSGSLLIRDGRIADISEGNSANGEDFEGDYLIPGLVELHTDHLEGHYSPRPGLRWNKTAAIQAHDAQIVTSGITTVFDCLRMGADEDGGFEHGEMREMADAIQKAEQEGRLRAEHLVHLRCEVSADNVLAHFADFEDDPYVRLVSLMDHAPGQRQFQTMDQYVFYYQKKRGLSDEAFARFIEKRLGESARNSTPHRTAIATVCKERGITVASHDDATLAHVDEAIENGVRLAEFPTSFDAAKASHAHGMSVLMGAPNVVRGKSHSGNIAARDLAERGVLDVLSSDYVPLSLLYAPFILADEVETISLSKAIAMVTATPARTVSLNDRGRIEIGLRADLVRVFRDEGVPVTRSVWREGRRVA
>NZ_CP017101.1|WP_074070112.1|186094_186790_-|DUF1045-domain-containing-protein
MRYALYFTPPKNNPLTGAASVWLGRDAFADETYPAPEEDGMTAAEQFELTADPRRYGFHATIKAPFALASSVNERDLMAVVEDFTGRTPAFEIPELVLGQIGRFFALVPGFLHAPLQDFAASVVKSFEPFRAALCEADIARRKPEKLTESQRANLMRWGYPYVMEDFGFHMTLTGQVPEERSALMKSILEKRFASFIGRPLSISGLAVFTEEERGGPFKIHSWLPLAGAKL
>NZ_CP017101.1|WP_074066239.1|186954_187572_-|acetyltransferase
MSRKLGDTPYIHETASVSDAKLGRYTEISERCRISEVEFGDYSYIMQDGSIWCATIGKFVNIAAAVRINATNHPTWRATLHHFTYRAADYWPDANMETEFFEWRRSNRVVIGHDVWIGHGATILPGVTVGNGSVVGAGAVVSNDVAPYTIVGGVPAKLIRERFPQELGERMDKLAWWDWEHSRLRAALEDFRALSAEDFLCRHDG
>NZ_CP017101.1|WP_074066240.1|187568_188279_-|phosphonate-C-P-lyase-system-protein-PhnL
MATPLVISEVSKSFTMHLRDGIKLPVISDVAFSVAAGECVVLGGPSGIGKSSLLKMIYGNYAVDTGQILISHKGRVVDLGSADPRTVIDVRRHTLGYVSQFLRTVPRVAAIDVVAEPLVARGEAAAGAREKAAALLEKLNLPEALWQLPPATFSGGEQQRVNIARGFITEHTVLLLDEPTASLDATNRAVVVGMIAEKKKAGVALLGIFHDEEVRGAVADRILDVQQFSPRKAVAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

944465 : 955134

uncultured_virus(33.33%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156886494.1\|944465_944918_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	1.9e-28	52.9
WP_083635730.1\|944984_945143_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_083635731.1\|945139_946231_+\|transposase	transposase	I4AZI9	Saccharomonospora_phage	1.2e-52	40.5
WP_074066814.1\|946691_947153_-	hypothetical protein	NA	NA	NA	NA
WP_074066815.1\|947790_949428_-	chaperonin GroEL	A0A219YK78	uncultured_virus	1.1e-174	62.7
WP_004675403.1\|949484_949781_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	2.4e-21	56.5
WP_074066816.1\|950143_950992_+	TIGR01459 family HAD-type hydrolase	NA	NA	NA	NA
WP_074066817.1\|951006_951990_+	bifunctional riboflavin kinase/FAD synthetase	A0A1V0SJE1	Klosneuvirus	6.1e-08	32.5
WP_074066818.1\|952233_955134_+\|tRNA	isoleucine--tRNA ligase	A0A1V0SD71	Indivirus	8.5e-58	23.6

DBSCAN-SWA_2

1516985 : 1527674

Bacillus_phage(16.67%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074067392.1\|1516985_1518239_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.5e-11	34.6
WP_039844551.1\|1518606_1519236_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	7.9e-62	58.2
WP_022714809.1\|1519538_1520816_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.7e-132	57.6
WP_074067394.1\|1521217_1523635_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.0e-206	50.0
WP_028739578.1\|1523840_1524116_+	HU family DNA-binding protein	A0A172Q061	Acinetobacter_phage	2.1e-06	34.1
WP_074070225.1\|1524482_1525382_+	DMT family transporter	NA	NA	NA	NA
WP_074070224.1\|1525475_1527674_+	esterase-like activity of phytase family protein	M4SLV1	Cyanophage	2.6e-83	44.6

DBSCAN-SWA_3

1787754 : 1799902

uncultured_Mediterranean_phage(90.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074067771.1\|1787754_1788615_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	3.0e-35	37.3
WP_074067773.1\|1788614_1789328_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	7.4e-40	46.4
WP_074067775.1\|1789515_1789707_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	4.4e-08	67.4
WP_074067777.1\|1789758_1790412_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_074067780.1\|1790408_1791236_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	4.9e-51	46.1
WP_074067782.1\|1791337_1792621_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.7e-95	44.6
WP_074067783.1\|1792625_1793393_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-23	29.6
WP_074067785.1\|1793399_1794053_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-16	35.5
WP_074067787.1\|1794225_1795818_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV24	Clostridium_phage	3.9e-12	30.8
WP_074067789.1\|1795894_1796767_-	ATP-binding protein	NA	NA	NA	NA
WP_022715367.1\|1796979_1797327_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	4.1e-12	40.2
WP_074067791.1\|1797370_1799902_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.1e-58	46.6

DBSCAN-SWA_4

1902420 : 1941839

uncultured_Mediterranean_phage(18.18%)

protease,transposase,integrase

attL 1898516:1898531|attR 1921693:1921708

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1898516:1898531	attL	NA	NA	NA	NA
WP_083635748.1\|1902420_1902645_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_074067923.1\|1902719_1903250_-	cytochrome c	NA	NA	NA	NA
WP_083635749.1\|1903316_1903556_+	DUF1515 family protein	A0A291AUW4	Sinorhizobium_phage	2.5e-08	52.7
WP_074067927.1\|1903562_1903802_-	hypothetical protein	NA	NA	NA	NA
WP_074067933.1\|1906007_1906271_-	DUF982 domain-containing protein	NA	NA	NA	NA
WP_167377875.1\|1906823_1907684_-	hypothetical protein	NA	NA	NA	NA
WP_074067936.1\|1907853_1908141_+	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_074067938.1\|1908406_1909300_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_074067940.1\|1909386_1910319_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_074067942.1\|1910491_1911070_+	alkylhydroperoxidase	NA	NA	NA	NA
WP_074067944.1\|1911236_1911872_-	type B chloramphenicol O-acetyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	2.9e-27	45.9
WP_074067946.1\|1912428_1912785_+	nucleotidyltransferase domain-containing protein	NA	NA	NA	NA
WP_074070248.1\|1912699_1913122_-\|transposase	IS200/IS605 family transposase	I4AZM1	Saccharomonospora_phage	9.5e-27	52.6
WP_083635750.1\|1913188_1913347_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_156886413.1\|1913343_1913490_+	hypothetical protein	NA	NA	NA	NA
WP_074067947.1\|1913511_1914051_+\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	3.3e-08	34.4
WP_074070249.1\|1914258_1914909_+	HAD family hydrolase	NA	NA	NA	NA
WP_074067949.1\|1914996_1915203_-	hypothetical protein	NA	NA	NA	NA
WP_074067951.1\|1915407_1915698_-	hypothetical protein	NA	NA	NA	NA
WP_022715463.1\|1915911_1916679_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-32	39.6
WP_074067953.1\|1916695_1917850_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_074067955.1\|1917851_1919054_-	amino acid ABC transporter permease	NA	NA	NA	NA
WP_074067956.1\|1919151_1920177_-	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	3.3e-81	43.4
WP_074067958.1\|1920544_1921735_+	cystathionine beta-lyase	NA	NA	NA	NA
1921693:1921708	attR	NA	NA	NA	NA
WP_074067960.1\|1921735_1922884_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_028739675.1\|1922907_1923153_-	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_074070250.1\|1923309_1924095_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_039844787.1\|1924220_1925051_+	serine O-acetyltransferase	NA	NA	NA	NA
WP_022715471.1\|1925186_1925390_+	DUF3126 family protein	NA	NA	NA	NA
WP_074067962.1\|1925549_1925957_+	DUF3597 domain-containing protein	NA	NA	NA	NA
WP_074067963.1\|1926209_1926578_+	phasin family protein	NA	NA	NA	NA
WP_027509391.1\|1926838_1927192_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.9e-13	43.9
WP_074067965.1\|1927202_1929689_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	5.7e-172	42.0
WP_074070251.1\|1930036_1930468_-	HIT family protein	NA	NA	NA	NA
WP_074067969.1\|1930521_1931712_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_074067970.1\|1931790_1932510_-	glycerophosphodiester phosphodiesterase	A0A1J0F961	Only_Syngen_Nebraska_virus	1.3e-12	26.5
WP_074067972.1\|1932506_1932977_-	RidA family protein	NA	NA	NA	NA
WP_074067974.1\|1933114_1933954_+	cell envelope integrity EipB family protein	NA	NA	NA	NA
WP_074067976.1\|1934097_1934808_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_074067977.1\|1934860_1935505_+	serine/threonine protein phosphatase	B4UTT5	Rhizobium_phage	2.5e-42	40.9
WP_022715483.1\|1935693_1936458_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_074067979.1\|1936699_1937626_+	elongation factor Ts	NA	NA	NA	NA
WP_022715485.1\|1937721_1938444_+	UMP kinase	NA	NA	NA	NA
WP_022715486.1\|1938497_1939058_+	ribosome recycling factor	NA	NA	NA	NA
WP_074067981.1\|1939092_1939836_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	5.2e-20	40.5
WP_074070252.1\|1939839_1940676_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_022715489.1\|1940705_1941839_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_5

2707096 : 2721406

Vibrio_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022714276.1\|2707096_2709151_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.7e-36	33.6
WP_074069000.1\|2709601_2709949_-	GFA family protein	NA	NA	NA	NA
WP_074069001.1\|2709958_2710996_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	2.4e-15	66.7
WP_074069002.1\|2711166_2712354_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	4.6e-34	27.2
WP_074069003.1\|2712420_2712651_-	hypothetical protein	NA	NA	NA	NA
WP_083635766.1\|2712647_2712806_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_083635831.1\|2712872_2713301_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	2.5e-27	52.1
WP_074069004.1\|2713485_2715342_-	DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	8.0e-78	35.9
WP_074070326.1\|2715341_2717321_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	5.5e-93	43.4
WP_074069006.1\|2718613_2719471_+	hypothetical protein	NA	NA	NA	NA
WP_039845442.1\|2719473_2719926_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.8e-15	39.9
WP_074070327.1\|2720200_2721406_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	5.6e-40	32.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage