CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP018472	Xanthomonas perforans strain LH3 plasmid pLH3.1, complete sequence	0 crisprs	PD-DExK,DinG	0
NZ_CP018474	Xanthomonas perforans strain LH3 plasmid pLH3.3, complete sequence	0 crisprs	NA	4
NZ_CP018476	Xanthomonas perforans strain LH3 plasmid pLH3.2, complete sequence	0 crisprs	NA	0
NZ_CP018473	Xanthomonas perforans strain LH3 plasmid pLH3.4, complete sequence	0 crisprs	NA	0
NZ_CP018475	Xanthomonas perforans strain LH3 chromosome, complete genome	3 crisprs	cas3,DEDDh,csa3,WYL,DinG	4

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018475_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018475_1

1153913-1154022

Orphan

Consensus_repeat	Method
GTGGAAGTGAACCTGGAACTGTTATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018475_1

>merge|NZ_CP018475|1|1153913-1154022|CRISPRCasFinder
GTGGAAGTGAACCTGGAACTGTTATTTCTTGCTGCCGATCTACGCCGCTACGCGCGCCGGCATGGGCGCGATGATTTGGCGACGTGGAAGTGAACCTGGAACCGTTATTT

>NZ_CP018475|1|1|1153913-1154022|CRISPRCasFinder
GTGGAAGTGAACCTGGAACTGTTATTT	CTTGCTGCCGATCTACGCCGCTACGCGCGCCGGCATGGGCGCGATGATTTGGCGAC
GTGGAAGTGAACCTGGAACCGTTATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018475.1\|WP_008576372.1\|1160516_1161599_-\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP018475.1\|WP_008576375.1\|1161595_1162183_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_087944180.1\|1158794_1159903_+\|IS3-like-element-ISXca2-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP018475.1\|WP_008576381.1\|1167738_1168713_+\|flagellar-motor-protein-MotD	unknown	unknown	gnl\|CDD\|181618
NZ_CP018475.1\|WP_002813536.1\|1147024_1147417_+\|chemotaxis-response-regulator-CheY	unknown	unknown	gnl\|CDD\|381150
NZ_CP018475.1\|WP_046931949.1\|1143653_1145354_+\|flagellar-biosynthesis-protein-FlhF	unknown	unknown	gnl\|CDD\|237182
NZ_CP018475.1\|WP_008576048.1\|1146221_1146989_+\|RNA-polymerase-sigma-factor-FliA	unknown	unknown	gnl\|CDD\|235901
NZ_CP018475.1\|WP_005918202.1\|1145340_1146225_+\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|349758
NZ_CP018475.1\|WP_128736497.1\|1151910_1152807_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|188593
NZ_CP018475.1\|WP_008577945.1\|1150316_1150835_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_008577942.1\|1153151_1153418_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP018475.1\|WP_008576378.1\|1163027_1166183_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|273804
NZ_CP018475.1\|WP_008576379.1\|1166991_1167732_+\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP018475.1\|WP_008577944.1\|1150849_1151914_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_008577940.1\|1154983_1156462_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_005918195.1\|1147416_1148043_+\|protein-phosphatase-CheZ	unknown	unknown	gnl\|CDD\|377318
NZ_CP018475.1\|WP_033479455.1\|1157181_1157598_-\|type-I-toxin-antitoxin-system-SymE-family-toxin	unknown	unknown	gnl\|CDD\|370150
NZ_CP018475.1\|WP_011347258.1\|1148045_1149704_+\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP018475.1\|WP_074053428.1\|1156477_1157095_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_033479453.1\|1157594_1157867_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018475.1\|WP_008576372.1\|1160516_1161599_-\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	6.11077e-12
NZ_CP018475.1\|WP_008576381.1\|1167738_1168713_+\|flagellar-motor-protein-MotD	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	5.19934e-147
NZ_CP018475.1\|WP_002813536.1\|1147024_1147417_+\|chemotaxis-response-regulator-CheY	gnl\|CDD\|381150	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY3, Escherichia coli CheY, and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.65099e-69
NZ_CP018475.1\|WP_046931949.1\|1143653_1145354_+\|flagellar-biosynthesis-protein-FlhF	gnl\|CDD\|237182	PRK12727, PRK12727, flagellar biosynthesis protein FlhF.	0
NZ_CP018475.1\|WP_008576048.1\|1146221_1146989_+\|RNA-polymerase-sigma-factor-FliA	gnl\|CDD\|235901	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.	1.2534e-105
NZ_CP018475.1\|WP_128736497.1\|1151910_1152807_-\|radical-SAM-protein	gnl\|CDD\|188593	TIGR04078, radical_SAM_domain_protein_protein, peptide modification radical SAM enzyme, YydG family. Members of this radical SAM protein family for peptide modification occur only in the context of members of family TIGR04077, which average about 50 amino acids in length. In Bacillus subtilis, this protein (YydG) appears to act on its cognate target peptide (YydF) prior to its export, and result in the creation of a signaling molecule that induces the LiaRS two-component system. [Regulatory functions, Protein interactions].	6.66657e-07
NZ_CP018475.1\|WP_008577942.1\|1153151_1153418_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	2.36513e-08
NZ_CP018475.1\|WP_008576378.1\|1163027_1166183_-\|TonB-dependent-receptor	gnl\|CDD\|273804	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor. This model represents a family of TonB-dependent outer-membrane receptors which are found mainly in Xanthomonas and Caulobacter. These appear to represent the expansion of a paralogous family in that the 22 X. axonopodis (21 in X. campestris) and 18 C. crescentus sequences are more closely related to each other than any of the many TonB-dependent receptors found in other species. In fact, the Crescentus and Xanthomonas sequences are inseparable on a phylogenetic tree using a PAM-weighted neighbor-joining method, indicating that one of the two genuses may have acquired this set of receptors from the other. The mechanism by which this family is shared between Xanthomonas, a gamma proteobacterial plant pathogen and Caulobacter, an alpha proteobacterial aquatic organism is unclear. [Transport and binding proteins, Porins].	0
NZ_CP018475.1\|WP_008576379.1\|1166991_1167732_+\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	3.39411e-149
NZ_CP018475.1\|WP_087944180.1\|1158794_1159903_+\|IS3-like-element-ISXca2-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	1.43474e-26
NZ_CP018475.1\|WP_005918202.1\|1145340_1146225_+\|MinD/ParA-family-protein	gnl\|CDD\|349758	cd02038, FlhG-like, MinD-like ATPase FlhG. FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.	4.21238e-106
NZ_CP018475.1\|WP_005918195.1\|1147416_1148043_+\|protein-phosphatase-CheZ	gnl\|CDD\|377318	pfam04344, CheZ, Chemotaxis phosphatase, CheZ. This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterized by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site.	3.328e-27
NZ_CP018475.1\|WP_033479455.1\|1157181_1157598_-\|type-I-toxin-antitoxin-system-SymE-family-toxin	gnl\|CDD\|370150	pfam08845, SymE_toxin, Toxin SymE, type I toxin-antitoxin system. SymE (SOS-induced yjiW gene with similarity to MazE ) is an SOS-induced toxin. It inhibits cell growth, decreases protein synthesis and increases RNA degradation. It may play a role in the recycling of RNAs damaged under SOS response-inducing conditions. It is predicted to have an AbrB fold, similar to that of the antitoxin MazE. Its translation is repressed by the antisense RNA SymR, which acts as an antitoxin.	1.43209e-12
NZ_CP018475.1\|WP_011347258.1\|1148045_1149704_+\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	9.4193e-166

>NZ_CP018475.1|WP_008577942.1|1153151_1153418_+|transposase
MKKSKFTEAQIAFALKQAEIAPRSMRSTARWASAKPTFYAWRKKFGGLGVAKLRRLGQLEEENRKLKQLEADLSLDNVMLQDVMSEKL
>NZ_CP018475.1|WP_128736497.1|1151910_1152807_-|radical-SAM-protein
MQALHDVKDSFPSLRVVVFTGGEATLLKDDLIAVIAEAASLDLVTRIVSNGSWGKTKASATRMAGKLAGAGLRELNISTGKDHQEWVPHESVVNAAEAAFNAGVLTLLTVEADTAESDKLSALARDPTVKSLRDRGLLLQSNSWMSFIAKGEEREHVLHTGRRATPCEQIHNNIAITPYGEVSACCGLTLEHIPEMKLGTMAEGVSNIYLRQYDDFMKYWLRMDGPAEIVRKVMGIERADQLLAGSVHICHDCAVLHKNPEIREKISATYEQFVPEVMSRYALASAVDQIVEKQGAQR
>NZ_CP018475.1|WP_008577944.1|1150849_1151914_-|hypothetical-protein
MKRRKFIESSLAAGAVASSSGGVVAADQAMRVFGQPASLTGGTANSAATKMLLPLSRGGMPTEGWDRWSKLTAAVVEMFSDPSQRRAFNNNPHKFLANLGYDSSAMEAPTLALLVALSDPLVQSAALEKDYISLLNYLHVAGALEKPKSDVLTQQMSKVLSSNLAIIKDTLGLAPDAPLDAETVKRFVGASASVPTAADLAAIGNIAQLVRVAPGQAVAGAIAAVVAAVEAAVGVQVVAVLFNYVTFVTHTSVTGATPSPGQPQTSQSMSTGIFTGQMSRLDPDICDSCTVAQRAAAMLGAPELYSEHAKLVIHNEVASFLRAMQQVGLIGFEESSFEAIVDAVYQYGMRTITA
>NZ_CP018475.1|WP_008577945.1|1150316_1150835_-|hypothetical-protein
MNCDIPLHLANGKTYLSIFGPFVFALAFVAFLYLAGKAPTPLKKGALVIVVLANVAIAGFLVWQARSARVSISGNALMLRAGTDSVVVPLGALRWDEAADASAMRFPFRKAGTGLPGMHVGWFRREGGGDAFLLRSSEPATLIPTTKQFDVVIPTTAYEQARKCVYDHKTAE
>NZ_CP018475.1|WP_011347258.1|1148045_1149704_+|chemotaxis-protein-CheA
MSAVPDDIAADFIVEAQEILDRLGEQLVSLEQAPEEADQLNAVFRGFHTLKGGAGFLAIKPMVELCHAAEETLGMARSGQAVLQAHHFDAAQQSLDYLQAMLDAMGSGEAVPHAPATLIAQFDAKSAPPAVKAAPQAAAAKPVAAAHGDDAHAPAPKAAGKGAAKTGAEAEQTVRVDTKRLDAIVNLIGELVLSRNRLKTLRTRLRDEELDRAVSTLDIATARLQTAVMRTRMQPVSKVFARFPKVARDVARTLSKEVELELIGAETELDRNLVEALADPLVHLVRNAIDHGIESPALREATGKPRSGHVRLSAQQEGDYVSIEIQDDGAGIDPERLREIARNKGLIDAEAAARLSTDECLHLIFMPGFSTKVEVTDISGRGVGMDVVQSRIRELSGQIQIQSELGRGSRFMIRVPLTLAILPTLLVQAGEAVYALPLARVVEVLHAPQTSLGWFDGRAVLDRRSHTLPLIDLRRWLGVPAEQPPLLTVVLLQAGETRFGLVVDQVRGREEVVIKPLPRALRGLPGYAGATLIGDGRMALILDVDGLRSSDH
>NZ_CP018475.1|WP_005918195.1|1147416_1148043_+|protein-phosphatase-CheZ
MNATMETDAERAALIERLQNALDALESGDQVAWRREVDHLAALRTRPMMQSLSRLARELGQALGELPTIPEEAGELDDACSRLDHVVEMTEKASHRTLDLVEECRELANQLRNGGLNQDQGALLEKMRHNLTELSLAQSYQDLSGQIIRRVAGIVRRVHEGFGALGLPPKNIEPKKDDGGLAGPAVKGLDRHAVSQDDADDLLSGLGL
>NZ_CP018475.1|WP_002813536.1|1147024_1147417_+|chemotaxis-response-regulator-CheY
MNKNMRILIVDDFSTMRRIVKNLLGDLGFTNTAEAEDGNSALAALRAGPFDFVVTDWNMPGMTGIDLLRNIRADAKLKHLPVMMVTAEAKREQIIEAAQCGVNGYIIKPFTAQTLEEKLGKVFERLAATA
>NZ_CP018475.1|WP_008576048.1|1146221_1146989_+|RNA-polymerase-sigma-factor-FliA
MSTATATTASAQYRAVQRNNANDVVTQHADLVRRIAHHLAARLPASVEVDDLIQAGMIGLIEASRSYDSEQGASFETYASIRIRGSMIDEIRRGDWVPRSVHRRARDAAAAVRKIEQNTGRAAAATEVAAAMEMPLPDYLRLMEDAARGQVLSLESRIEDHGELDTTAKGGPNPQQMMERGEFGRELGKAIGQLPEREQLVLSLYYEQELNLKEIGAVLGVSESRVCQIHGQAVVRLRGRLKVFELADAGVEVDD
>NZ_CP018475.1|WP_005918202.1|1145340_1146225_+|MinD/ParA-family-protein
MQSREYAKLTNAFPLSATRPEPLGPVRTIAVTGGKGGVGKTNISANLAVALADMGKRTLLLDADLGLANLDVVLGLAPKYTLADLIAGRCTLDEVIIEGPGGVLVVPAASGRRHMAELAPAQHIGLVNVFSELERDLDVMVIDTAAGITDSVLTFCQAAQDTVVVVCDEPASITDAYALIKVLSRERGVDRLQIIANMVRDPNEGRLLYDKLSRVCEKFLGDVSLNYLGHVPQDDWLRLSVQRQQPVIKAYPASPSAQAIAEIARRTSRWQAPTVPRGNVEFFVERIIQRGVAA
>NZ_CP018475.1|WP_046931949.1|1143653_1145354_+|flagellar-biosynthesis-protein-FlhF
MKIKRFVAPDMRTAFRMVREEHGPDAVILSNRRTAEGIEIVAASNYDEELVQRALETARSDTPAPAQHQQAPAQPAPAPQAPAKPSAPVHALLKPSADTEASQRQRVASAADDMIAAMALRQPVSVPRQAPVAAPVRTASIPSPAAQALAHAVAVTAAPRQEHALSAVPEQLFADFLTTAPVQRPAVPATAVQAPAPVAAATVTAPAFAAAGQDDDAFADEADFDLDDALPQILPPAALPPIVVAPPAPAALAAVPVAAAPIPQNDEELKQLRGELALMRQMIEREMNRLTDERLRGSPVRAQALELMDDYGFDAGLTRDIALQIPADTELHRGRGLMLGLLSKRLPVSPVDPLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRDYKLVLIDTAGMGQRDRALAAQLNWLRAAQQVTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDLRRAADKPCTPEHNHAVA
>NZ_CP018475.1|WP_008577940.1|1154983_1156462_-|hypothetical-protein
MSLSPDALKVLNDFGNEPGVTKPHVDQLRQLLTDSPELTRQLNVAIDQKLVTSFKPLTDPHAGGSFDPVGHSIQLPLTKLVGPNGVAPPSAGDLTFVLGHELQHSTFSPDAEAARQQFMTEARTIARTTHDYTSAAEKVIASNREDESRAEIAGWNATLSRVKGSTPQPTLEDIYRAAPGRMRDFIDTAAGSQGLVYTLKPNLSLNQDLTMSATPANIEAMGVNYFDKPAQDTQIGYGGLSDYHNHYGPWVIGTAAIFERHYNKAQQGTPEQPMIFNLQRLGLKEDALERNGIDLGSNTRPMPYLDSSTQPPTPGLFQHSKNTHLHVSPISAQELEQELRARESPSQGTSLHLLPSDPGHADHPLYQQIKDGVQKLDSAHGRQWDASSERMTASLLALAKEEGLSRVDHVVLNNPTAQLAGGEKVFVVQGALNDPAHQRAHMSTMDAVQTPETQSFDRLQAINQTQAQAREQQQALEQSQQAVSQAGPSMTR
>NZ_CP018475.1|WP_074053428.1|1156477_1157095_-|hypothetical-protein
MIARPLYALLATLALGACAHTAATPAPATVTETSAMNSSSPTTVPPNKPTAEGLLGQLLVLIKGSQNISDFTPERLNSTMGQAVQFVKGDERRYRAFGPLTKDWSYGFGVDETKLDGRWFEFRFDRNVAGASPAMTEICRLDFDRFTQQLEQMGFARERNIVEDGRWMSDFFTRPGMRVEVFPRGEAAEPQEFVAHKCVEWVYIR
>NZ_CP018475.1|WP_033479455.1|1157181_1157598_-|type-I-toxin-antitoxin-system-SymE-family-toxin
MTRHRPPTTSASTRPTRTRARPTPPKRVQWVVVEPDRTKLPPMLPPDPDASPQGPGTLRAPRRARRPGQCTVSYTHYPGAHDHAGDQHVPHVRLSGLWLEQLGFAIGTKLRITASEGQLLMEVLPPVQVPAKARSVRR
>NZ_CP018475.1|WP_033479453.1|1157594_1157867_-|hypothetical-protein
MSIAPSMPASVPGYLLPASAHSFLSEVGEVLRRLAARAAVEQASDDLAQQLLNQPGVLSQALHSLSARIDVALQQCVAAPSATRRQSEAP
>NZ_CP018475.1|WP_087944180.1|1158794_1159903_+|IS3-like-element-ISXca2-family-transposase
MRKSKFTDSQIVATLKQVEGGRQVKDVCRELGISDATYYVWKSKYGGMEAADVQRLRDLETEHNKLKRMYAELAMENHALKDVIGKKTVDPAHKRPLLAWLIEQHGWSERRACSVVGVARSTMRYQRRPDRDDEVIALLSELAERFPERGFGKLFQIIRRRGHVWNHKRVWRVYCLMKLNQRRRSRRRVPTRHPQPLACGDRPNAGWSIDFMSDALWDGRRFRTFNVIDDFSREALAIEVDLNLPAARVIRTLERIAAWRGYPNKLRLDNGPEFVALALSEWAERKGIALDFIEPGRPMQNGFIERFNGSYRRGVLDMHLFRTLSEVREQTEHWLADYNQQIPHDSLGGLTPAEFRDQHQPQTSSFSWH
>NZ_CP018475.1|WP_008576372.1|1160516_1161599_-|DUF262-domain-containing-protein
MKTSATNRRVHQLLTAIASGRLNPRPDFQRRQVWTNDDKIAFIRTVISGLPFPEIYVCAGTLDPETGEATEFLVDGQQRITTLHQYFTAYADLRLGELMPYAELTRPEKEEFLEYEVVVRDLGKQPIEDIRKIFEVINSANYALNAIEIQNARYAGKFKQFCERIADSEFFKNWKTFTPSDIRRMQDLRFCLLLVSTVLSTYFNRDDGIEDFLKQYNDEFPLENDLEGQILETMQFVNSLEFDRHSRALRRTDLFTLLVETYRALFNRRVSLDGATAQHRLNEFYEKFGNYSFADTRLGMTYYIASLRSSTDRVNRYRRGEIIQSLLDPEYIPKLDFTALDEAFSNDPQQQSLDFTTDEP
>NZ_CP018475.1|WP_008576375.1|1161595_1162183_-|hypothetical-protein
MRLEIQQRIEAFKKMLLANGIERTMNELILRHDCSIIGGSMESSIRTEIADYLDVETEEVIIVGSAKLGFSPKPGQCFKPFDEASDIDVAIVSPELFAAIWHEVLDMKAGGAFIKDIQGFQHYHFQGWMRPDKMPASSTYHRCRDWWEFFLSLSKKEEYDRRPIRGGLYYDTSFLSRYQTTALAQIQRQISKSNP
>NZ_CP018475.1|WP_008576378.1|1163027_1166183_-|TonB-dependent-receptor
MDRYKAAEADHHWESTTEMNCTPFARNRSTLYAGIAIALFASAASTTVSAQQADGTPAPTGQAAMQATDLDAVTVTGYRYAIEKSLEQKRNANAVVDVITAEDVGKFPDKNVADALQRVPGVVISRDGGEGKNVSVRGLSSELVLTELNGNYIATAESNGDPTRSFNYTLLPSNLLGSAELYKTPEARIDEGGIGGTVILQTRRPLELEPNSGFVSAEGTWSDTSKKTDGQFSGSYSWHDKDNRFGVFVGYTQQKRTARTLDASTESWQWYGRDEVGPAVDVNGNPSDFNANWWGGTGFWNQDGNYSTGFMMPTAVSLDAKREERERKGGQLTLQFKPTDDLTLTANYFRFDLSQNSQTNTIKIPEWNIARYYGDGNWRGGRLLDALQFDPSGTIVTGAAYSLRPGKTYYCSEAQAAAAGLPPGGWGSDDCTVPTPQITGSYNIEKSQSQTVDLGGEWRGEQVDVAFKVGRTWAKGGPELQFSLPIKPRLQNADGSWSNGNFASAWDLTGTPSMTFSPQLMQNLRDGILQVDLGSTGSSWTRNTNQQQYAQIDTTWHFDGEVFDSLQFGLKRRDGGIHRSTGNNYWVCPGTDPGDYDNRYWNGRCNAIATQFSPGLLFAQDNLAGGVNASAFPAINFPGYIGYLNQTYGAMQTRNEDNFVYNVDEEIYSSYLQLNFHTERLRGNVGVRVARTGQRAASTDKVTAYNDYFFDGADGNPLACQQGAATPGGAPADTYCGTEGYWRLADSVQRTESFVVSGLDRNYTDVLPSFNLAYDLTENLLLRAAAAKVIARPSYNDIAAPGSLEFYSPEYVADRRLTGGASEQGWYGSGSNKNLEPYKANQFDLGLEWYFHPGSVAGVGLFRKNVENFAVDVISDVNMMVDGQPVTVQNYSTQAGGQDAVSQGVELYAQHTLPFGLGVQFNYTYNDASKAAVRLEDGTEAGKTSMPGSARNQTNFTVFYETDSLLLRASYNRRGELVQGLVNGLNVFEEPYYQIDVNAAYNITPALSLTASVLNLTKQESRQHLGDDTRARFYTGGYAGRLAYLGLTYKF
>NZ_CP018475.1|WP_008576379.1|1166991_1167732_+|flagellar-motor-protein
MDRLSVIGLVLAIVAIVGGSVLKGAGISSLWSPAAFVIVIVGTVAAILLHTSPAVFRRAFKILRWVIQPPASDRPQLVARIVEWSNIARRQGLLGLEDQLPRQDDAFLRKGLQMLVDGVEPESMRHMLEIEVDNQERQDLAAAKVFEGMGIYAPTLGIIGAVLGLMAVMKNLADPAMLGHGIAAAFTATIYGIASANLLFLPVAAKLKSVIHCSTNEREMAIEGLIAIAQGENPRNIESKLAGYLH
>NZ_CP018475.1|WP_008576381.1|1167738_1168713_+|flagellar-motor-protein-MotD
MARRRKHHEEHGNHEAWAIPYADLMTLLLAFFVVMYAISSLNEGKYKVMAQALTSAFGGSSNKASPVQLGKTQTLGADYDRPSVIKAGAPMAASNGPTDPTLLPSMAAQMRMPVSLRNQAQLARAQRQMDAVEQQLSKTLAPLIDKQLITIRRNDLWIEVEINSDILFGTGSATLAGRARGTLSTLASVLRDAPNGVRVEGYTDNQPIATAQFPSNWELSAARAASVVHLFADDGIAPQRLAMVGYGEFRARADNSTEAGRNANRRVVLIILADSAGSLAPDPPSQLNATAAGAPKLPKSDGGQTAVTTESGTSSVPAVIQGVQ

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Crispr_ID: NZ_CP018475_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018475_2

1791317-1791412

Orphan

Consensus_repeat	Method
CGGGACCCGGGACCCGGAACAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018475_2

>merge|NZ_CP018475|2|1791317-1791412|CRISPRCasFinder
CGCAACCCGGGGCCCGGGACCCGGGACCCGGAACAGCTGCAGGTGGGCCGGTTGGTGGTGCCGCTTTAGAGGTCGGGACCCGGGACCCGGAAAAGC

>NZ_CP018475|2|2|1791317-1791412|CRISPRCasFinder
CGCAACCCGGGGCCCGGGACCCG	GGACCCGGAACAGCTGCAGGTGGGCCGGTTGGTGGTGCCGCTTTAGAGGT
CGGGACCCGGGACCCGGAAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018475.1\|WP_005911715.1\|1786729_1786921_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_008578264.1\|1801635_1801998_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP018475.1\|WP_008578284.1\|1780809_1781637_+\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|366491
NZ_CP018475.1\|WP_008578275.1\|1789364_1790651_+\|lipid-A-disaccharide-synthase	unknown	unknown	gnl\|CDD\|234580
NZ_CP018475.1\|WP_008578282.1\|1782856_1784203_+\|RIP-metalloprotease-RseP	unknown	unknown	gnl\|CDD\|182723
NZ_CP018475.1\|WP_008578270.1\|1796363_1797119_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|227044
NZ_CP018475.1\|WP_003485378.1\|1788059_1788518_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	unknown	unknown	gnl\|CDD\|234568
NZ_CP018475.1\|WP_008578273.1\|1791602_1795193_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235554
NZ_CP018475.1\|WP_008578265.1\|1800721_1801639_-\|sensor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379374
NZ_CP018475.1\|WP_011346889.1\|1788543_1789335_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	unknown	unknown	gnl\|CDD\|235390
NZ_CP018475.1\|WP_008578269.1\|1797208_1797658_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_008578268.1\|1797862_1798309_-\|CopD-family-protein	unknown	unknown	gnl\|CDD\|367596
NZ_CP018475.1\|WP_008578280.1\|1787049_1788063_+\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	unknown	unknown	gnl\|CDD\|234858
NZ_CP018475.1\|WP_008578281.1\|1784286_1786653_+\|outer-membrane-protein-assembly-factor-BamA	unknown	unknown	gnl\|CDD\|274514
NZ_CP018475.1\|WP_008578267.1\|1798382_1798985_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369778
NZ_CP018475.1\|WP_008578263.1\|1802305_1803859_+\|alginate-export-family-protein	unknown	unknown	gnl\|CDD\|372583
NZ_CP018475.1\|WP_029819025.1\|1781639_1782830_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP018475.1\|WP_008578271.1\|1795346_1796306_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_CP018475.1\|WP_008578266.1\|1799249_1800593_+\|polyhydroxyalkanoate-depolymerase	unknown	unknown	gnl\|CDD\|130908
NZ_CP018475.1\|WP_011346894.1\|1780054_1780813_+\|di-trans,poly-cis-decaprenylcistransferase	unknown	unknown	gnl\|CDD\|237831

Protein	Function_ID	Function_description	E-value
NZ_CP018475.1\|WP_008578264.1\|1801635_1801998_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.38706e-18
NZ_CP018475.1\|WP_008578284.1\|1780809_1781637_+\|phosphatidate-cytidylyltransferase	gnl\|CDD\|366491	pfam01148, CTP_transf_1, Cytidylyltransferase family. The members of this family are integral membrane protein cytidylyltransferases. The family includes phosphatidate cytidylyltransferase EC:2.7.7.41 as well as Sec59 from yeast. Sec59 is a dolichol kinase EC:2.7.1.108.	3.59797e-65
NZ_CP018475.1\|WP_008578275.1\|1789364_1790651_+\|lipid-A-disaccharide-synthase	gnl\|CDD\|234580	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed.	0
NZ_CP018475.1\|WP_008578282.1\|1782856_1784203_+\|RIP-metalloprotease-RseP	gnl\|CDD\|182723	PRK10779, PRK10779, sigma E protease regulator RseP.	9.02981e-125
NZ_CP018475.1\|WP_008578270.1\|1796363_1797119_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|227044	COG4700, COG4700, Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown].	1.79828e-60
NZ_CP018475.1\|WP_003485378.1\|1788059_1788518_+\|3-hydroxyacyl-ACP-dehydratase-FabZ	gnl\|CDD\|234568	PRK00006, fabZ, 3-hydroxyacyl-ACP dehydratase FabZ.	3.06233e-81
NZ_CP018475.1\|WP_008578273.1\|1791602_1795193_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0
NZ_CP018475.1\|WP_008578265.1\|1800721_1801639_-\|sensor-domain-containing-protein	gnl\|CDD\|379374	pfam13796, Sensor, Putative sensor. This family is often found at the N-terminus of proteins containing pfam07730 and pfam02518. The N-termini of proteins containing these two domains often function in stimulus sensing.	1.532e-31
NZ_CP018475.1\|WP_011346889.1\|1788543_1789335_+\|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase	gnl\|CDD\|235390	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase.	7.89975e-151
NZ_CP018475.1\|WP_008578268.1\|1797862_1798309_-\|CopD-family-protein	gnl\|CDD\|367596	pfam03653, UPF0093, Uncharacterized protein family (UPF0093).	3.52541e-44
NZ_CP018475.1\|WP_008578280.1\|1787049_1788063_+\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	gnl\|CDD\|234858	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional.	1.42102e-173
NZ_CP018475.1\|WP_008578281.1\|1784286_1786653_+\|outer-membrane-protein-assembly-factor-BamA	gnl\|CDD\|274514	TIGR03303, OM_YaeT, outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat. [Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP018475.1\|WP_008578267.1\|1798382_1798985_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.17058e-07
NZ_CP018475.1\|WP_008578263.1\|1802305_1803859_+\|alginate-export-family-protein	gnl\|CDD\|372583	pfam13372, Alginate_exp, Alginate export. This domain forms an 18-stranded beta-barrel pore which is likely to act as an alginate export channel.	1.29105e-31
NZ_CP018475.1\|WP_029819025.1\|1781639_1782830_+\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP018475.1\|WP_008578271.1\|1795346_1796306_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_CP018475.1\|WP_008578266.1\|1799249_1800593_+\|polyhydroxyalkanoate-depolymerase	gnl\|CDD\|130908	TIGR01849, unnamed_protein_product, polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some [Fatty acid and phospholipid metabolism, Degradation].	0
NZ_CP018475.1\|WP_011346894.1\|1780054_1780813_+\|di-trans,poly-cis-decaprenylcistransferase	gnl\|CDD\|237831	PRK14836, PRK14836, undecaprenyl pyrophosphate synthase; Provisional.	1.15908e-162

>NZ_CP018475.1|WP_008578275.1|1789364_1790651_+|lipid-A-disaccharide-synthase
MDGQRNGASVGSDPTALPILHSPLPIPGAHARPPRIALIAGEASGDILGAGLIEQLRLRYPNAEFVGIGGDAMRGVGCQTWFDASELAVMGLTEVLRHLPRLLKLRSAFRERVLAWKPDVFIGIDAPDFNLPVERWLKQRGIKTVHYVSPSVWAWREKRAEKIGVSADLVLCLFPMEPPIYARHGVDARFVGHPMADDIAYQADRAAARATLGLSASSTVLAVLPGSRHGEISRLGDTFFQAAWLVSEHLPNLHVLVPAANPGCKQLLAEQLSRSSLPVMRSHLLDGQARTAMLAADVVLLASGTATLEAMLVKRPMVVGYKVAPLTYRIVKLLGLLKVNRYALPNILANDDLAPELMQDDCTPERLCVALLDWFKHPEKVASLQPRYLALHAQLRRDASARAADAVAGLLEGRDSEVGIGDSAGAKA
>NZ_CP018475.1|WP_011346889.1|1788543_1789335_+|acyl-ACP--UDP-N-acetylglucosamine-O-acyltransferase
MRDSTPLIHPTAVIDPSATLADDVRVGAFSLIGADVQIGAGTEVGPHCSIHGPTRIGRNNRFIGHAAIGGEPQDKKYAGERTELVIGDGNVIREFVTINRGTGGGGGVTVVGNDNWMLAYTHVAHDCHVGNHCVFSNNTTLAGHVTVGDYVIISGFAGAHQFCRIGAHAFLGMGALTNGDVPPFTMVGSDSLGRPRGINSEGLKRRGFDAERITAIKRAYRTLYVAGLPLADAKLQLAEQAKSSEDVRGMLEFIEAAERPLLR
>NZ_CP018475.1|WP_003485378.1|1788059_1788518_+|3-hydroxyacyl-ACP-dehydratase-FabZ
MSHHVYELPIDVSQIQTLLPHRYPFLLVDRILELDLETKWIVAQKNVSINEPFFQGHFPNRPVMPGVLIIEALAQVGGVMTQLGLGRDALSQLFYMVKVDKARFNKQVVPGDVLIMEVQMKRLIRNVGCFYGEAKVDGEVVASAEVMCAGAR
>NZ_CP018475.1|WP_008578280.1|1787049_1788063_+|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase
MRLTASAIAEQFGLTVVGDGTTEVSGVATLAHAGAGQLSFLSNPRYRPQLADTQAAVVVLRADDADAAKGTALVAKDPYTAFAKIAALFDVAPVREPGIHASAVIDPTAQVSPGAHVGPFVSIGARSRVGDGCVIGTGSIIGEDCVVDEGSELLARVTLVTRVRLGKRVRIHPGAVIGADGFGLAMDAGHWIKVPQLGGVVIGDDCEIGANTCIDRGALEDTVLEEDVRVDNLVQIAHNCRIGAHSAIAGCTGIAGSAKIGRYCLLGGHVGVVGHLEICDKVVITGKSVVRNSIHEPGEYSSGTPLTDNRTWRKNAARFKQLDVLARRILAVGKEKE
>NZ_CP018475.1|WP_005911715.1|1786729_1786921_-|hypothetical-protein
MKTVLSIFGSVILLGAVTSASADDFAQQRTNALSFWDQQVQCVDASDWGATATCLGNVWNNYF
>NZ_CP018475.1|WP_008578281.1|1784286_1786653_+|outer-membrane-protein-assembly-factor-BamA
MTRLPTRRLLALALAAGLSLPAVALAVEPFVASDIRVDGLQRIASGTVFTYLPVNRGDTVDDAKVADAIRALYRTGFFEDVQLDRQGNILVITVKERPAINKLTVTGNKDIKSEELLKGLGDIGLSEGGTFDRLSLDRVTQELTRQYNNRGKYNVEITPTVSPLDRNRVDVAIAIKEGKAAKIRHVNLIGTEKFANEDILDNWESKEHNWASWYRRDDQYSKEKMSGDLEKLNSWYLDRGYVDFSIDSTQVSISPDKRDMFISAGVTEGEQYKISEIKVTGDTVLPQADIERLVIPKAGDIFSRALLEYTSDAITNTLSNVGYAFAKVNPIPTPNREDRTVAVNLQVVPGPRVTVRRILYKGNSRTSDEVLRREMRQFENTWYSQAAIDRSKIRLQRLGYFESVDVETPAVPGSNDQVDVVYNVKETTSGSFVFGLGYSQSFGVTTSVQLSQNNFLGGGNRVAVEASRSSYQQRYAFSYTNPFFTDDGVSLGYNLSWRALDYSDFNTAQFNSKNGSAQVVFGVPITENDTVSAMVGIDSNQITTFAGTTPQAIIDYINAIGTRTFHAWRTELGWARDTRNDFFMPTRGMYQRVGLETTLPGSTVEYYKLNYQISNYWPIIPALVLNTRFELGYGDSYGKDSTRVLTNPDGSTRTVTATGLPFYENFYAGGTNSVRGFEDNTLGPRSEAINGFTRGQPLGGSFKTVGSVEMYFPKLFDSPSARVSAFVDFGNVYNGVDNFKANELRASTGVALLWRAPVGPISISYAFPLKKEDNDEIERLQFTFGGQF
>NZ_CP018475.1|WP_008578282.1|1782856_1784203_+|RIP-metalloprotease-RseP
MGDFIGSVWWMIVSLGVLVTFHEFGHFWVARRCGVKVLRFSVGFGKPLWMRRDRHGTEFVVAAIPLGGYVKMLDEREGDVHPAEQDQAFNRKTVWQRIAIVAAGPIANLLLCMAMLWAMFVVGKQDYSATIGRADGLAAEAGLGPGERIVRIDGRSVSSWSDASMQLTTAAMDRRDVRVLTTSDTAGSSEHTLRLSQLPVGFDERRVAALAGIGWQFMLQPPVIAEVVKGSVADGLLKPGDRIVAIDGQPIRSAEDIIPQVQALGAHGGPGMIEVARGEDRLALEIAPRKSPQGQWMIGVRPAAAPAPEYDSRQQYGLFAAVPAAIRETGRMTADSLGMMKRMLTGQASVKNISGPVTIARAANASAERGLDWFLYFLGLLSLSLAIINLMPIPILDGGHLLYYLIELIKGSPISERAMIAGQYVGLAVLAGLMGLAFYNDILGLVPR
>NZ_CP018475.1|WP_029819025.1|1781639_1782830_+|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MAGSSLRQVAVFGATGSIGASALDVIARHPERLRASVLSAGSKVDELLALCATHRPAHAVIADAALYPALRDGLRALGLATQAHAGAEALDALASGDACDTVVAAIVGAAGLPSTLAAARAGKRLLLANKESLVLAGELLTRTAAAAGAEIIPIDSEHSAIFQCLRSCDASRGVRRVILTASGGPFRGRDRAALAAVTPAQAVAHPKWSMGPKISVDSATLMNKGLEVIEAHHLFGLPGEQIDVLVHPQSLVHSLVEFVDGSTLAQLGLPDMRTTLAVGLAWPERVDSGVGGLDLLRQGRLDFEAPDTAAFPCLRLAWDALRAGGTAPAILNAANEVAVSAFLQGQVGFLAIPALVEHTLTTLPRHNADSLDTLLFADAQARQITERALAHHALHA
>NZ_CP018475.1|WP_008578284.1|1780809_1781637_+|phosphatidate-cytidylyltransferase
MTKTRVIAALIMAPLAICAIVLLPTNLLAALSAVLFLIGLWEWLKLSGIDDSLPRTVLLMLNLLLMVLMVWASAGSMVLFRIASLVGVAWWLLALLWLRFFTFGADHGNGQARALKLAAGTLAVLPAWAALVLLHASPDKGNLWLLTALTMVWAADSGAYFAGRAFGKHKLAPRVSPNKTIEGLLGGLIAGIAVACAFGWLAGLTLAHVPQLVLVSALAVLASVLGDLFESLLKRHAGAKDSGTLIPGHGGVLDRIDGVLAALPVFALGKEILGF
>NZ_CP018475.1|WP_011346894.1|1780054_1780813_+|di-trans,poly-cis-decaprenylcistransferase
MHPVPSAAVPRHIAIIMDGNGRWAQRRRRPRMIGHRAGARAVNRTIDFCLEKGVSALTLFAFSSENWGRPQDEVDALMKLFLHALDREVEELQRRGVQVRFIGDRSRFAAPLRERMAGAERSTATNSRLVLSIAASYGGRQDIAAAARALAEDVAAGRLQPEQIDEALLSSRVALADLPAPDLFIRTGGDTRISNFLLWQLAYTELWFTETLWPEFDAGVLQQALDDFAGRERRFGLTSAQIADKATESSSA
>NZ_CP018475.1|WP_008578273.1|1791602_1795193_+|DNA-polymerase-III-subunit-alpha
MSTSRFVHLHVHTEFSLADSTIRVPEKPDQADPKKAKQANLLSRAVELDMPALAVTDLNNLFALVKFYKAAEGVGIKPIAGADVMIATPDMTPWRMTLLCRDREGYLSLSRLLTRAWMEGHRPEGGVAIHPEWLQAGHANLFALAGRDSLAGRLFNEGRADLAEQQLADWQRVFGDGLHLELTRTGREGEERFNQFALHAAGVRGLPVVASNDVRFLYASDFNAHEARVCISSGRVLDDPKRPREYSDQQYMKSSEEMAALFADIPDAIDNTHALAQRCNIEMRLGTYFLPAYPVPEDETLDSWIRSQSRQGLAARLEKNPIAPGKTRQDYVDRLEFELDTIIKMGFPGYFLIVADFIQWGKNQGIPIGPGRGSGAGSLVAWALQITDLDPLPYNLLFERFLNPERVSMPDFDIDFCMDRRDEVIDYVARKYGRERVSQIITYGTMAAKAVVRDAGRVLGFSYGLVDSVAKLIPNILGITLKDAMGEGKDSEMASPDLIQRYQVEDDVRDLMDLARQLEDLTRNAGKHAGGVVIAPDPLSEFCPLFAEHDEDGRGKNPVTQFDKDDVEAVGLVKFDFLGLRTLTIIDWAVKAINVRHARAGIDPVDITAIPLDDVPTYKGVFASGNTGAVFQFESSGMRRLLKDARPDRFEDLIALVSLYRPGPMDLIPDFNARKHGQQEIVYPDPRTEVILKDTYGIMVYQEQVMQMAQIVGDYSLGGADLLRRAMGKKVPAEMAKHREIFREGAAKGGVSAAKADEIFDLMEKFAGYGFNKSHAAAYALVSYQTAWLKRHYPAEFMAATLSSDMDNTDKVVGFLDEVRNLGLTVKPPRVNESAYMFEAASPDTIQYGLGAIKGVGQGACEAIVEERQRGGPYTTLLDFCTRVGTAKLNRRTLEAMINAGAMDGLGKNRASLMLQLPEVMKATEQMARERASGQNSLFGGPDPSAPAMRLDLPESKEWPLGQLLTGERETLGFYLSGHPFDPHREEVRELVGCDLGALEKILASQQRGGGGGGGDGEKRAWRPEVSAILAGQVVGVRRKGDSQVFVQLEDGRGRVECSAFSDAMAEFGHLLTRDRILIVKGGLREDEFNGGYSLRIRQCWDYEQICADHAQRLSLRLDLREKQAFKRIDALLAKHRPGKTPLRLDLLLRAPSGGVAGMLDLNGNHSVRIDQQLMDGLRADPAVRTVKIKYSPPWA
>NZ_CP018475.1|WP_008578271.1|1795346_1796306_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MNPNYLDFEQPIADLEAKIQELRKASTGPAVNVETEVRALRDKLRVRTAQIFRDLSAWQVSQLARHPQRPYTLDYIDTICDEFQELAGDRAYADDKAIVGGLGRIDGRPVVIIGHQKGRDTKTKVARNFGMPRPEGYRKALRLMKLAERFRLPLLTFIDTPGAYPGIGAEERGQSEAIARNLLEMAELKIPVICTVIGEGGSGGALAIGVGDRTLMLEYGTYSVISPEGCASILWKDAAKAKDAAEQLGLTAKRLKGLGLVDKVIREPTGGAHRNPEQMGKRLKAVLLNELDALEKIPVDALLQQRYERLRSYGAYEGH
>NZ_CP018475.1|WP_008578270.1|1796363_1797119_+|tetratricopeptide-repeat-protein
MSPLLLISLLLQAACCVHVVRSGRPLYWIFLLLAFSLLAVLVYVCVAVIPDLRNDPNARRRLKRVRSTLDPQREQRDASRRLDVADTPENRRQLAETLLARGDYAQAAEHYQGALRGLYRDDPHLMLGLARAQFGLGQPQQTRQTLDALIAANPSFRSHDGHLLYARAVEGSGDTEAALHEYETLAQGYPGEEARVRYAQLLQRIARNDQARAVYEQVLRHAAASPKHYQREQRAWVDLARKGLRELDTSA
>NZ_CP018475.1|WP_008578269.1|1797208_1797658_+|hypothetical-protein
MQRKPEIEAVLKAEIDHLLEQSTQRFRSGALAESLALGLQAWALIPEPKANWDYYPQSLSAGFVKDYADLHDQENVHRWIEVMALMYDDPDHTDHLVLMTEGEAMLQLGDEARACAAFGKIYTLYGKKGFAGHQKRYLEMLLKQHPTGA
>NZ_CP018475.1|WP_008578268.1|1797862_1798309_-|CopD-family-protein
MTLYLWIKTFHLLFVIAWMAAVFYLPRILVNIAEAGSDTAVRARLVLMGRRLYTFGHSMLGLALLLGAVLWQGYRVIPDFPTMVAGGWLHAKLFAVALILAHYIVSGRWVKGAEQGRAVPSGRALRWFNEAPVILLVGVIWLVLAKPF
>NZ_CP018475.1|WP_008578267.1|1798382_1798985_+|class-I-SAM-dependent-methyltransferase
MQQSAPKQYDAHYFRRWYRDAGLADHARLRRKVALAVAQAEYYLERPIRSVLDVGCGEAAWRAPLLALRPKLSYLGFDSSAYAVQRYGRSRQIHPARFGDFAWLRPCAPVDLLICSDVLHYVPTREFNQGLPGLAEMCAGVAFLEAFAEEDAFEGDHDDFQSRTARWYRKRFASVGFAALGSHCWLSPQLADQASALERG
>NZ_CP018475.1|WP_008578266.1|1799249_1800593_+|polyhydroxyalkanoate-depolymerase
MLRGSKTARMGGMLYQLHELTRNLLAPWVHQAQANAKMFSDPDSLWASLPGAERMAASNELFHRLGKEYEKPAWALDDVEVDGHSLPIIEREVLSKPFCRLLRFKRFSDHVELIGKMKEQPAVLVVAPLSGHHATLLRDTVRTLLRNHKVYVTDWVDARMVPLEAGAFRLEDYITYIQEFIRHIGAERLHVVSVCQPTVPVLAAVSLMASNDEPTPRSLVMMGGPIDARRSPTQVNNLATENGIEWFQNNLIHTVPFPYPGHGRQVYPGFLQHAGFLSMNPNRHVMSHWDFYTDLVKGDLQDAQAHRQFYDEYNAVLDMPAEYYLDTIRVVFQEFLLPQGKWKVDGQLVKPSAIRNTALLSIEGELDDIAGLGQTEAVHDLCTGIDAAHRRHLVVEGAGHYGIFSGRRWREVVYPQVREFIARYDADPVGSRDLATVTPIRKRGKRA
>NZ_CP018475.1|WP_008578265.1|1800721_1801639_-|sensor-domain-containing-protein
MNTIAQAHPLPTTIGDYLLQLRQALSGADPAMIQDALYDAEEYLRAELAEQQGKSEAEVIAGVASSYGAPEEVAEIYRETEVTVARALRPPVPPQRASWIGTFFGVAADPRTYGALFYMLLSLLTGVFYFTWVVTGASLSVGMLILIIGVPLLVLFFGSVRVLSLVEGRVVETLLGVRMPRRPQHPGLQGGWLQRIGAMFTDARTWSTMLYFLLMLPLGIVYFTVFCTLLSLSLGLAASPIAALFDQVAVLTWDGVDITSAWLTLPLFAVGVLLLFVTLHLARAFGKLHGMFAKQLLVRSGEAAA
>NZ_CP018475.1|WP_008578264.1|1801635_1801998_-|PadR-family-transcriptional-regulator
MSEPDIHLRKFQKELSAGTVSLALLAVLAQADAPLYGYLIAKRLERLEGVLSGKQSALYPVLRNLEGAGLLHSHVEPSASGPPRRYYRITDSGRDCLRDWTAAWRATRDSVDSVLEGTHS
>NZ_CP018475.1|WP_008578263.1|1802305_1803859_+|alginate-export-family-protein
MQMTRLAQPAMADTSFGATRRLCLAIGLALPGLGLAQVQPAPTNAEQAVAEPAKAPVTAAPATAKGYPLEAQGWGAKQGGNMWQVRWAEDWSYLKDPSKRKSPFDPLKYIPLNDDGDVYVSLSNELRVRSNTITNPGLIPGSHSQQQYLLRAFFGADFHVGEHFRLYTELAHGSLDGRNEGTKTGTQENNAILQQVFFDVKGRIGSADTGLRVGRQVFVDGPTTLMALRDNTDIFVTFNGARAWAIGDRTRVDLFDFNFNIDGTEGLGDDRIDRSRHFRGVVGGYRLATAKPMYLEPFFYQFRNDNQVWGRQTAEENRNYYGLRLWGNVGKLRTDSFVTVQRGSFGGRDLRAYMASTSNAWSLSESGWKPRLGFHSEIASGGGGTSGTGTLRNNNFLYGNTIYFSWATFFGPVNLVTAAPTLTFSPTSKLTVNLEWETLWRQTTSDAIYNNQARAYARTQNTGERRIGTMPRINATWNIDPNWSVTFRAEHLMAGPALEKAGYGDSTFVMGWLNFRF

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Crispr_ID: NZ_CP018475_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018475_3

4228238-4228340

Orphan

Consensus_repeat	Method
GATTCGGGATTCGGGATTCGGGATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018475_3

>merge|NZ_CP018475|3|4228238-4228340|CRISPRCasFinder
AGGACGGGATTTGGGATTCGGGATTCGGGATTCGGGATTCGCAACAGCCGAAGCGCCGTGGCCTTTGCGAATCCCTGGCGGCCGTGATTCGGGATTCGCGATT

>NZ_CP018475|3|3|4228238-4228340|CRISPRCasFinder
AGGACGGGATTTGGGATTCGGGATT	CGGGATTCGGGATTCGCAACAGCCGAAGCGCCGTGGCCTTTGCGAATCCCTGG
CGGCCGTGATTCGGGATTCGCGATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018475.1\|WP_008578020.1\|4220909_4221590_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
NZ_CP018475.1\|WP_008578010.1\|4228435_4229443_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|236863
NZ_CP018475.1\|WP_008578016.1\|4223598_4224426_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|224561
NZ_CP018475.1\|WP_008572889.1\|4237470_4238118_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_008578017.1\|4222884_4223445_-\|DUF1415-domain-containing-protein	unknown	unknown	gnl\|CDD\|377792
NZ_CP018475.1\|WP_031424976.1\|4235710_4237474_+\|dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|237000
NZ_CP018475.1\|WP_031424980.1\|4231116_4231533_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_008578023.1\|4218727_4218946_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_008578013.1\|4226141_4226603_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_031424979.1\|4232371_4232929_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018475.1\|WP_031424985.1\|4221675_4222482_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187662
NZ_CP018475.1\|WP_008578009.1\|4230281_4231082_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP018475.1\|WP_033479490.1\|4224412_4226149_-\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP018475.1\|WP_003489185.1\|4229439_4230135_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP018475.1\|WP_008578003.1\|4234816_4235581_+\|DUF2884-family-protein	unknown	unknown	gnl\|CDD\|378556
NZ_CP018475.1\|WP_011348664.1\|4234032_4234593_+\|DNA-deoxyinosine-glycosylase	unknown	unknown	gnl\|CDD\|381682
NZ_CP018475.1\|WP_008578012.1\|4226748_4227234_-\|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl\|CDD\|213038
NZ_CP018475.1\|WP_008578021.1\|4220199_4220913_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211327
NZ_CP018475.1\|WP_014091128.1\|4233205_4233892_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|335531
NZ_CP018475.1\|WP_033479493.1\|4219135_4220203_+\|methyltransferase	unknown	unknown	gnl\|CDD\|368316

Protein	Function_ID	Function_description	E-value
NZ_CP018475.1\|WP_008578020.1\|4220909_4221590_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	1.27589e-48
NZ_CP018475.1\|WP_008578010.1\|4228435_4229443_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	0
NZ_CP018475.1\|WP_008578016.1\|4223598_4224426_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	1.26818e-12
NZ_CP018475.1\|WP_008578017.1\|4222884_4223445_-\|DUF1415-domain-containing-protein	gnl\|CDD\|377792	pfam07209, DUF1415, Protein of unknown function (DUF1415). This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.	6.08396e-104
NZ_CP018475.1\|WP_031424976.1\|4235710_4237474_+\|dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0
NZ_CP018475.1\|WP_031424985.1\|4221675_4222482_-\|SDR-family-oxidoreductase	gnl\|CDD\|187662	cd09761, A3DFK9-like_SDR_c, Clostridium thermocellum A3DFK9-like, a putative carbohydrate or polyalcohol metabolizing SDR, classical (c) SDRs. This subgroup includes a putative carbohydrate or polyalcohol metabolizing SDR (A3DFK9) from Clostridium thermocellum. Its members have a TGXXXGXG classical-SDR glycine-rich NAD-binding motif, and some have a canonical SDR active site tetrad (A3DFK9 lacks the upstream Asn). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.93385e-81
NZ_CP018475.1\|WP_008578009.1\|4230281_4231082_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.20174e-130
NZ_CP018475.1\|WP_033479490.1\|4224412_4226149_-\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	8.19614e-61
NZ_CP018475.1\|WP_003489185.1\|4229439_4230135_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	2.58882e-95
NZ_CP018475.1\|WP_008578003.1\|4234816_4235581_+\|DUF2884-family-protein	gnl\|CDD\|378556	pfam11101, DUF2884, Protein of unknown function (DUF2884). Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.	9.31331e-46
NZ_CP018475.1\|WP_011348664.1\|4234032_4234593_+\|DNA-deoxyinosine-glycosylase	gnl\|CDD\|381682	cd10032, UDG-F6_HDG, Uracil DNA glycosylase family 6, includes hypoxanthine-DNA glycosylase and similar proteins. Uracil DNA glycosylase family 6 hypoxanthine-DNA glycosylase (HDG) lacks any detectable UDG activity; it excises hypoxanthine, a deamination product of adenine, from double-stranded DNA. Uracil-DNA glycosylase (UDGs) initiates repair of uracils in DNA. Uracil in DNA can arise as a result of misincorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations. Thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other.	1.01625e-63
NZ_CP018475.1\|WP_008578012.1\|4226748_4227234_-\|YajQ-family-cyclic-di-GMP-binding-protein	gnl\|CDD\|213038	cd11740, YajQ_like, Proteins similar to Escherichia coli YajQ. In Pseudomonas syringae, YajQ functions as a host protein involved in the temporal control of bacteriophage Phi6 gene transcription. It has been shown to bind to the phage's major structural core protein P1, most likely activating transcription by acting indirectly on the RNA polymerase. YajQ may remain bound to the phage particles throughout the infection period. Earlier, YajQ was characterized as a putative nucleic acid-binding protein based on the similarity of its (ferredoxin-like) three-dimensional topology with that of RNP-like RNA-binding domains.	1.81339e-82
NZ_CP018475.1\|WP_008578021.1\|4220199_4220913_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	1.85762e-75
NZ_CP018475.1\|WP_014091128.1\|4233205_4233892_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|335531	pfam03922, OmpW, OmpW family. This family includes outer membrane protein W (OmpW) proteins from a variety of bacterial species. This protein may form the receptor for S4 colicins in E. coli.	9.66666e-42
NZ_CP018475.1\|WP_033479493.1\|4219135_4220203_+\|methyltransferase	gnl\|CDD\|368316	pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.	3.91713e-68

>NZ_CP018475.1|WP_008578012.1|4226748_4227234_-|YajQ-family-cyclic-di-GMP-binding-protein
MPSFDVVSEVDKHELTNAVDQANRELDTRFDFKGVQAKFELEDGKVINQSAPSDFQIKQMTDILRARLLARGIDIRCLEFGEVETNLAGARQKVTVKQGIEQKQAKQLVAKLKEAKLKVEAQINGDKLRVTGKKRDDLQDAIALLKKADFELPLQFDNFRD
>NZ_CP018475.1|WP_008578013.1|4226141_4226603_-|hypothetical-protein
MRDLFASLLQRLRMHGPANAAGEHARHAAAHAQPRIETGSTLHTMAGLDPVAAAAFADAFLVEIEHAIATCTLGDAGTPQAQALQQIHSLKNTISLTGSQQLLKACDQLRDTASHGALGETLAQRFTAVANAAGLLVKQYRRTLPSDDADPHA
>NZ_CP018475.1|WP_033479490.1|4224412_4226149_-|response-regulator
MRSTPNRAAPGLILAARQLRNDRLVRLFESFLEYRACVGRVIVQSIVTAWCLGWLYGPQPVLVADAHHVFPTAVGLWVLSVVWMLLVRRRVIAPSEWLDAMGFAMNLLFIGIQTYLAFILLMSLNAFLPFITIAAVARYGQRAIFPVLLSTFVLMLLTAPSGYWLSRPAYFVYAVALIIVLPLLVARIVLAMQEVALQALASRDAQSRFISTMSHELRTPLNAVINCAQLIETEQMPAQQRELLHSVTVNATALRHRVNEVLDVASIDGGRLQLHRKPLNLLDVVTTVKAVCATAASSKGVTLDVRVDSPQAPHVMGDEGRIEQVISNLVINAIKFTPAGGTVDLLIDATQVQERWSIAVTVTDTGIGVPDDQKAYIFTPFTQLSTGFSRVEGGVGLGLYIALSVSDAMGGSLTVSDNPAGGSIFRWMFELPAAASGSHTLALRDALAQHAENVPSLHCLVFEDMDTNRLVIGNLLTRAGHRVSFQVDGTDAVQRIREAAPDLVFLDLHMPGTSGWDALRQARDAMSALPPIIVLTADTRTDSMRDASAAGVAGYLPKPINAHELLALLARHASHARP
>NZ_CP018475.1|WP_008578016.1|4223598_4224426_-|alpha/beta-fold-hydrolase
MHAPELKPGNAARAYWQHAAHAGTPLAVLYLHGFSASPGEAGALPEQMADALGANGYVHRWPGHGLTAADAMQGLTPAVLQASALEALAQAQRMGERVAIVGSSMGATLGLWLAARYPDAVAGVVAWSPGIRPADPALLEQICAAQAPLIDPRTRTPAARAFWSETIHPDGFRALRDLFALIAADPPWPQVRCPVFLGYYRAADGREDGVASVPAMLQMFAALGTAPAHRQALAFDTGAHAIGSPHKTPLAGAVAQASIAFLQAQLRAAPHGLNA
>NZ_CP018475.1|WP_008578017.1|4222884_4223445_-|DUF1415-domain-containing-protein
MTTTPATSDPIADTRKWIERAVIGLNLCPFAKAVYVKEQVRLVLSDASTPEALLEQLAEELVLLRDTPAEQIDTTLIVHPDVLTDFLDYNDFLDNADAAVEALDLQGVLQVASFHPDYQFAGAALDDVANFTNRSPFPTLHLLREDSVERAVAAFPDPDVIVERNIQTLQRLGSDGWERVLNGAEH
>NZ_CP018475.1|WP_031424985.1|4221675_4222482_-|SDR-family-oxidoreductase
MALIPAISAWNPSPLQDRVVVITGGAQGIGRGIAQAVLGAGGSVVIGDLDADAGKACLQEWALPRRSAFVRCDAARQAQATRLVATALKRFGRIDGLVNNAGVPDPHIAALPQLDWDTWNSRLSSLHGAFLCSRQALPALRQAPAGGAIVNIASTRAWQSEPHSEAYAAAKGGLVAFTHALALSEGPHVRVNSISPGWISTDAWRAPQRRRAPKLSRRDHAQHPAGRVGTPEDIAQLAVYLLAPQLSGFVTGQDFIVDGGMSRKMHYA
>NZ_CP018475.1|WP_008578020.1|4220909_4221590_+|HAD-family-phosphatase
MTHSAALPFRPQAVIFDMDGLMLDSERAITACLAQAADDQDLQIEPAFWLRMVGTGDAACRRLLGERIGEAAADTMLAHAQRLYAAAVERGIPHRPGIIALLDYLAAQRMPRAVATSTQRPLALRKLEAADLLWRFDAVCTASDVVHPKPAPDIYLLAARTLAVDPAHCLVLEDSPTGVRAALAAGMTPIQIPDLLEPDATVRALGHRILPSLVDAQRLLEARLSG
>NZ_CP018475.1|WP_008578021.1|4220199_4220913_+|rRNA-pseudouridine-synthase
MKLVKHIANLGYGSRKQVTQLFRQGAITDAQGEVLYADDQVEHDAIRIDGEPLDPPAGLSLLLHKPSGYTCSTKDTGRLIYELLPPRFRLRAPVLAPVGRLDRETSGMLLMTDDGALLHRIISPKSALDKVYDITLAEDLHGEEAALFASGSLLLDGETKPLLPAELEVLGPRQARLTLHEGRYHQVRRMFAAAGNHVVALHRSRIGGLSLDGLPSGQWRALEANDLEVLFGRGAPA
>NZ_CP018475.1|WP_033479493.1|4219135_4220203_+|methyltransferase
MAGPHDAPLQALFLPFAQGALPWPEGPVLFLRARDGFPLREQASTQTLTCEQSFRPFAEALERNGWTVREESEIEADSTRYALVLVLPPRQREEARALFARAVALTAPGGRVVACQSNNEGARSGEADLRQLTGLAGSLTKYHCRTYWSAPLPADTDAALQARWAALDAPRKILDGRFVSRPGVFAWDRIDPASALLVEHLPTTLAGHGADLGAGFGYLSAEVLARCPKVTALDLYEAEARALTLARRNLQDIAHPAQLHYHWRDVTAGLVAQYDFIVSNPPFHTPSRADRPDIGQRFIAVAAQALRPGGQLILVANRHLPYEQVLNDSFGQVRVAAERDGFKLIAAIRGRGARP
>NZ_CP018475.1|WP_008578023.1|4218727_4218946_-|hypothetical-protein
MDLDDTPPPMHYPENTGAGRPRYRLHQIGERGDGTVAYAVYGAPEMADEDITRITEERGYARRFSASPEAPR
>NZ_CP018475.1|WP_008578010.1|4228435_4229443_+|methionine-ABC-transporter-ATP-binding-protein
MIQFQRLHKSYSVDGRQIVALHPLDLRIGPGEVFGIIGHSGAGKSTLIRLINRLEEPSGGRLLIGDEDVTALDGQGLRALRRRIGMIFQHFNLLSSRTVAGNVAFPLELAGTPRAEIDARVAELLARVGLQEHANKYPAQLSGGQKQRVGIARALATRPQILLCDEATSALDPQTTASVLQLLAQINRELGLTIVLITHEMDVIRRVCDRVAVLDAGKLVETGPVTEVFLHPKHATTRRFVSEAEHVDEAELHRDFAAVGGRIVRLTFLGNGTYEPVLGRIARETGVDYNILSGRVDRIKDTPYGQLIVALTGGDQNAARAGFVAAGVQVEDLRV
>NZ_CP018475.1|WP_003489185.1|4229439_4230135_+|ABC-transporter-permease
MTPIVAAAGGFFRNLDAAKWGDIGQATLDTLLMLAGALPLTLLIGLPLGVALFLCGAPQLRRRPVLYGALAALINLLRSVPFIILMIAMIPLTLMLMGTSLGVRGAILPLVVGAAPFYARLVETALREVDRGIIEASQAMGATTRQLVLRVLLPEARPGLIAGATVTTIALIGFTAMGGAIGSGGLGDVAYREGYLRSHSDVALITVIALLVLVQVLQMLGDRLVAHYSRR
>NZ_CP018475.1|WP_008578009.1|4230281_4231082_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MSTFAFRSLLAAATLALASCGGGGGGGGDTLTVAATAVPHAEILEVVEPLLAKQGVKLDVRVFNDYVQPNDQVVQKQIDVNYFQTEPYLDAYNRDRKSQLVTVVGVHIEPFGAYSRRFKALAELPTGADVVIPNDPSNNSRALILLDKAGVIKLKDPSNALSSQRDIVENPKQLKFRELDSAMLPRVLDQVDLALINTNYALDAGLNPTRDALAIESKDSPYVNFLVARADNKDDARVQKLAKALTSPEVKAFIEQKYKGAVLPAF
>NZ_CP018475.1|WP_031424980.1|4231116_4231533_-|hypothetical-protein
MDACVVINLAQDGFDSIGTHGLSSCVCICAKGKNPRGHDILGLLHYSGIQDAQDALSEIRDDMREEGVRKPDIFLVGGMISNQDELGSFEIERDLLALGHDFNIVGAKLHPSMSDRNGEENAINLVMTADGIYYYKSW
>NZ_CP018475.1|WP_031424979.1|4232371_4232929_+|hypothetical-protein
MPLLLAIPLAVIIALAVFVVVFPLSLLQRFRMGTARRQARGWLLMINLVSAGISSVLFVIFSLIAAAFWPGAISHAAFGWACGLALGALALRLTRFERTTQGLFYRPNLWLVLGLTALVVVRVIAGMVQGWRSAWQGVAWPTDGWLSHASLLGAAGVLLGYALAYATLLWWRWRSARLRGSVYWR
>NZ_CP018475.1|WP_014091128.1|4233205_4233892_-|outer-membrane-beta-barrel-protein
MRSISILSLAAVSALAIAPSAFAQDTTYTGDTSSTSSSTMSTSGDTASGKHWAVVGGVALLNPKNNPAPGLDVDGGPAPTLSASYYINDNWAVELWGAADKFNHRVNADGVGKVGTVEQQPIAISGQYHFGEADNVFRPFVGVGYYESNFSNEKIDAASTTGDHVGLSTAKGVIGTVGVDMNINSTWFARADARYMRSRPELRVGGQGTGSELELDPWTVGFGIGARF
>NZ_CP018475.1|WP_011348664.1|4234032_4234593_+|DNA-deoxyinosine-glycosylase
MQSEKDIHADAIAVTKKHLSQGLPAHVRSDCRVLLLGSMPGVASLEAARYYAHPRNRFWPLMHALLGIDAAASYALRLQALLDHRVGLWDVIGQCERRGSLDTSIVAASIVVNPLPALLATLPQLRMVACNGAAAAQAWRRHVQPRLSAQLCALPVVALPSTSPANAAWSLPRLAAAWQPLCDALR
>NZ_CP018475.1|WP_008578003.1|4234816_4235581_+|DUF2884-family-protein
MAIKHAITMAAAALFGLLSGAGVAAAKDQDLHCEVSSDYDLTLNARSLILIRESGTPQRLVMRQGALFVDDRWVALSEDDRARLVQFERQTREVVPLAQAVGREAADIAVTALGEVAAGFSRSPDATRAQLANVREKIDVRLKQSFGKSQLTPIDIDDDIGALVAELLPQLIGDVVAGAVQSAITGNDVQLRSLDGMEARIERLVEPQARALRPRAHQLCQRLEALDALDNALAYRLPSGEPLQLLRVDRRAAK
>NZ_CP018475.1|WP_031424976.1|4235710_4237474_+|dihydrolipoyllysine-residue-acetyltransferase
MAEIKEALVPDIGDYSDVPVIEVLVSVGDTVSKDQSLVTLESDKATMEVPSSVAGVVKELKVKVGDSLSQGALVALIEVADAGAETAKPAAAAPAKAAPAAAPAPAAKAESAAPAASSEGGLIEARVPDIGDYTDIPVIEVLVAVGDTVAKDQSLVTLESDKATMEVPSSAAGVVKELKVKVGDTLSQGNVVAIIAASDGGTGAAQSPAKPTTDTAETAGKVEPVAVPAEPDKLAQREIAQVQGARSGAGTQAAQGGQPSAGNPSSPPVTFDADSVLPSKVPYASPVVRVFARELGVDLNQLKGSEKGGRITREDVQRYVKAALSGGAPAAAGAAPAGGGNGLNLLAWPKVDFSKFGETETQPLSRIKKISGANLARNWAMIPHVTQFESADITDLEALRVALNKENEKAGIKLTMLAFLVKASAAALKKFPEFNASLDAAGENLTLKKYFHIGFAADTPNGLVVPVIRDVDKKGVLQIAQESGELAKKARDGKLGPADMSGGCFSISSLGGIGGTAFTPIINAPEVAILGVSKSAMQPVWNGKEFAPKLMLPLSLSYDHRVIDGALAARFTTYLSQVLADMRRVLL
>NZ_CP018475.1|WP_008572889.1|4237470_4238118_+|hypothetical-protein
MRAALLTIAALGVLPWANAAARECESTLGRGWPPAVGNYGTAVTTLLDGGTKPALSLLTLPTRGVESAVSLVPGKEGADWTLRHSRADERVYSWVSQTDRGSVQFRTEQTPETVEVPIPAPLAKRLVSNWTNTLTQLAPNGRTAPVSEGEVLSFQVDGVRYSGARPSCGAGELLLKQAALLIEASEGKEKKRDKRWTQIESSLDELQQTLAGTAG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

857707 : 919205

Xanthomonas_phage(42.86%)

portal,head,coat,integrase,capsid,terminase,protease

attL 857094:857147|attR 868531:868584

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
857094:857147	attL	NA	NA	NA	NA
WP_074053113.1\|857707_859207_-\|terminase	terminase large subunit	K7PLY2	Enterobacterial_phage	3.7e-182	64.3
WP_039586769.1\|859206_859674_-	hypothetical protein	NA	NA	NA	NA
WP_074053114.1\|860057_861203_-\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	1.4e-61	36.7
WP_081375937.1\|861199_861718_-\|head,protease	HK97 family phage prohead protease	A0A2H4J6Z9	uncultured_Caudovirales_phage	8.1e-28	46.1
WP_074053115.1\|861719_862931_-\|capsid	phage major capsid protein	R9TPU0	Vibrio_phage	1.3e-44	37.5
WP_152666708.1\|863064_863736_-	hypothetical protein	NA	NA	NA	NA
WP_081375938.1\|864372_866241_-	AAA family ATPase	NA	NA	NA	NA
WP_126952661.1\|866250_866517_-	hypothetical protein	NA	NA	NA	NA
WP_126952662.1\|866513_866768_-	hypothetical protein	NA	NA	NA	NA
WP_039586775.1\|866767_866965_-	hypothetical protein	NA	NA	NA	NA
WP_155767289.1\|867036_867414_-	hypothetical protein	NA	NA	NA	NA
WP_074053117.1\|867410_868445_-\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	5.0e-37	35.1
WP_046932256.1\|868755_870048_+	nucleotide sugar dehydrogenase	NA	NA	NA	NA
868531:868584	attR	NA	NA	NA	NA
WP_008575657.1\|870031_871294_-	TIGR03862 family flavoprotein	NA	NA	NA	NA
WP_014090254.1\|871304_871736_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_008575660.1\|871795_872161_+	hypothetical protein	NA	NA	NA	NA
WP_008575662.1\|872260_873022_+	sulfurtransferase	NA	NA	NA	NA
WP_003489223.1\|873246_873894_+	response regulator	NA	NA	NA	NA
WP_008575663.1\|874417_878086_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_008575665.1\|878495_879482_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_008575666.1\|879515_881333_-	DUF3300 domain-containing protein	NA	NA	NA	NA
WP_008575667.1\|881630_882449_-	zinc transporter ZupT	NA	NA	NA	NA
WP_008575670.1\|882713_883136_-	energy transducer TonB	NA	NA	NA	NA
WP_003489213.1\|883132_883489_-	4a-hydroxytetrahydrobiopterin dehydratase	NA	NA	NA	NA
WP_008575672.1\|883577_884177_+	NfuA family Fe-S biogenesis protein	NA	NA	NA	NA
WP_008575674.1\|884190_885993_+	hypothetical protein	NA	NA	NA	NA
WP_008575676.1\|886283_886856_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_008575678.1\|886979_888092_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_008575680.1\|888142_891268_+	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_008575681.1\|891416_892058_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_031422808.1\|892239_893154_+	NmrA family NAD(P)-binding protein	NA	NA	NA	NA
WP_008575686.1\|893155_894310_+	epoxide hydrolase	NA	NA	NA	NA
WP_031422804.1\|894478_894943_-	hypothetical protein	NA	NA	NA	NA
WP_031422802.1\|895217_895694_+	BLUF domain-containing protein	NA	NA	NA	NA
WP_008575693.1\|895992_896583_+	class I SAM-dependent methyltransferase	A0A2P1JQT7	Mycobacterium_phage	5.6e-09	35.3
WP_029819477.1\|897449_897968_+	dehydrogenase	NA	NA	NA	NA
WP_008575699.1\|897955_898714_+	PIG-L family deacetylase	NA	NA	NA	NA
WP_008575701.1\|898710_899313_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_008575703.1\|899309_899978_+	glycosyltransferase	NA	NA	NA	NA
WP_033479000.1\|900267_901632_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_008575707.1\|901628_903155_+	GMC family oxidoreductase	NA	NA	NA	NA
WP_008575709.1\|903208_904012_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	5.3e-10	26.7
WP_074053121.1\|904179_904941_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_008575714.1\|904965_905406_-	TIGR01244 family phosphatase	NA	NA	NA	NA
WP_008575716.1\|905402_905834_-	membrane protein	NA	NA	NA	NA
WP_008575717.1\|905830_906271_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_008575719.1\|906267_907134_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_033479010.1\|907388_907697_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_008575722.1\|908249_909275_-	alpha/beta hydrolase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	1.7e-53	39.0
WP_074053122.1\|910578_910917_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_155767290.1\|911080_911224_+	hypothetical protein	NA	NA	NA	NA
WP_074053122.1\|912108_912447_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_155767290.1\|912610_912754_+	hypothetical protein	NA	NA	NA	NA
WP_074053122.1\|913638_913977_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_155767290.1\|914140_914284_+	hypothetical protein	NA	NA	NA	NA
WP_074053124.1\|914958_915615_-	conjugal transfer protein	A0A077JBM8	Xanthomonas_phage	1.4e-101	84.9
WP_074053125.1\|915614_916781_-	zonular occludens toxin	A0A077JGB2	Xanthomonas_phage	3.7e-206	90.7
WP_046933297.1\|916777_917095_-	DUF2523 domain-containing protein	A0A077JCZ2	Xanthomonas_phage	7.5e-53	97.1
WP_074053126.1\|917094_918639_-\|coat	A coat protein	A0A077JDC5	Xanthomonas_phage	8.0e-132	59.5
WP_074053127.1\|918744_918999_-	hypothetical protein	A0A077JBM7	Xanthomonas_phage	5.0e-31	90.6
WP_046933299.1\|919004_919205_-	hypothetical protein	A0A077JGA5	Xanthomonas_phage	3.0e-31	100.0

DBSCAN-SWA_2

3399200 : 3467908

Bacillus_phage(23.08%)

transposase,tRNA,protease,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008573005.1\|3399200_3400541_+\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_008573006.1\|3400704_3401562_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_008573007.1\|3401754_3404055_+	TonB-dependent receptor	NA	NA	NA	NA
WP_008573008.1\|3404294_3405392_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_033478680.1\|3405543_3406332_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_008573117.1\|3406982_3407939_-	TerC family protein	K4F9T9	Cronobacter_phage	4.5e-32	31.7
WP_008573115.1\|3408203_3409370_+	class I SAM-dependent rRNA methyltransferase	NA	NA	NA	NA
WP_003482258.1\|3409492_3409813_+	hypothetical protein	NA	NA	NA	NA
WP_008573114.1\|3410093_3411347_+	dipeptidase	NA	NA	NA	NA
WP_008573112.1\|3411814_3413125_+	MFS transporter	NA	NA	NA	NA
WP_008573111.1\|3413150_3414320_+	glycerate kinase	W6LM47	Streptococcus_phage	1.1e-43	39.3
WP_008573108.1\|3414554_3415745_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_033478697.1\|3415857_3417606_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	8.2e-16	32.3
WP_008573104.1\|3417714_3418104_+	DUF2628 domain-containing protein	NA	NA	NA	NA
WP_008573101.1\|3418769_3421703_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	9.3e-113	30.9
WP_033478695.1\|3421933_3424408_+	glycoside hydrolase family 92 protein	NA	NA	NA	NA
WP_008573097.1\|3424657_3426073_-	amino acid permease	NA	NA	NA	NA
WP_008573095.1\|3426288_3426669_-	hypothetical protein	NA	NA	NA	NA
WP_171309833.1\|3426788_3427511_-	glutathione S-transferase N-terminal domain-containing protein	NA	NA	NA	NA
WP_008573091.1\|3427570_3427801_-	hypothetical protein	NA	NA	NA	NA
WP_008573089.1\|3428137_3429070_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_008573087.1\|3429165_3430173_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_014091563.1\|3430357_3431890_+	DNA recombination protein RmuC	NA	NA	NA	NA
WP_109290613.1\|3432081_3432483_+	hypothetical protein	NA	NA	NA	NA
WP_033478691.1\|3432636_3433188_+	glutathione peroxidase	A0A1S7DM81	Molluscum_contagiosum_virus	6.2e-10	34.4
WP_008573078.1\|3433246_3433726_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_046932685.1\|3433865_3434921_-	VacJ family lipoprotein	NA	NA	NA	NA
WP_008575279.1\|3434931_3435222_-	STAS domain-containing protein	NA	NA	NA	NA
WP_008575277.1\|3435211_3435874_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_008575276.1\|3435870_3436416_-	outer membrane lipid asymmetry maintenance protein MlaD	NA	NA	NA	NA
WP_008575275.1\|3436427_3437177_-	ABC transporter permease	NA	NA	NA	NA
WP_008575273.1\|3437176_3437971_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.7e-08	27.8
WP_008575271.1\|3438353_3438641_+	hypothetical protein	NA	NA	NA	NA
WP_008575269.1\|3438659_3439217_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_008575267.1\|3439221_3439758_-\|tail	phage tail protein	NA	NA	NA	NA
WP_008575266.1\|3439818_3440346_-\|tail	phage tail protein	A0A218M5J0	Arthrobacter_phage	7.2e-16	34.5
WP_011349183.1\|3440412_3440958_-\|tail	phage tail protein	NA	NA	NA	NA
WP_046932683.1\|3441224_3446033_+	autotransporter domain-containing protein	F5B3Z3	Synechococcus_phage	6.8e-20	46.7
WP_008575260.1\|3446387_3449801_+	exodeoxyribonuclease V subunit gamma	NA	NA	NA	NA
WP_046932682.1\|3449797_3453850_+	exodeoxyribonuclease V subunit beta	S5MMD7	Bacillus_phage	8.3e-11	21.5
WP_046932680.1\|3454052_3456428_+	AAA family ATPase	A0A0K2FLP8	Brevibacillus_phage	1.2e-09	24.8
WP_008571772.1\|3456782_3457073_+	HigA family addiction module antidote protein	M9MUN2	Rhodococcus_phage	2.2e-14	52.5
WP_008571771.1\|3457421_3458816_+	nucleoside hydrolase	NA	NA	NA	NA
WP_003482327.1\|3458918_3459098_-	hypothetical protein	NA	NA	NA	NA
WP_033478553.1\|3459165_3461091_-	M61 family metallopeptidase	NA	NA	NA	NA
WP_003482333.1\|3461426_3461759_-	hypothetical protein	NA	NA	NA	NA
WP_033478552.1\|3462324_3462843_+	hypothetical protein	NA	NA	NA	NA
WP_008571767.1\|3463207_3463951_-	glucose 1-dehydrogenase	A0A0M4JSW6	Mollivirus	1.7e-15	29.8
WP_008571766.1\|3464034_3464607_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_008571765.1\|3464723_3465293_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_008571764.1\|3465356_3465833_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_031425208.1\|3466004_3466439_-	hypothetical protein	NA	NA	NA	NA
WP_077708913.1\|3467051_3467696_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_033478871.1\|3467692_3467908_+\|transposase	transposase	Q6J1X2	Lactobacillus_phage	1.7e-11	53.0

DBSCAN-SWA_3

4068183 : 4117870

Stenotrophomonas_phage(60.0%)

plate,portal,tRNA,head,holin,integrase,capsid,terminase,tail

attL 4068681:4068698|attR 4097907:4097924

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_008572821.1\|4068183_4069107_+\|tRNA	methionyl-tRNA formyltransferase	NA	NA	NA	NA
4068681:4068698	attL	NA	NA	NA	NA
WP_008572819.1\|4069106_4070417_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
WP_008572818.1\|4070465_4072187_+	glycosyltransferase family 39 protein	NA	NA	NA	NA
WP_029820470.1\|4072352_4073630_+	O-antigen ligase family protein	NA	NA	NA	NA
WP_008572814.1\|4073826_4074651_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_074053325.1\|4074651_4075710_+	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
WP_008572809.1\|4075870_4077376_-	PH domain-containing protein	NA	NA	NA	NA
WP_029820467.1\|4077372_4077849_-	PH domain-containing protein	NA	NA	NA	NA
WP_008572805.1\|4077987_4079121_-	GTP cyclohydrolase II RibA	A0A2H4PQS2	Staphylococcus_phage	6.1e-28	40.2
WP_008572803.1\|4079366_4079888_+	N-acetyltransferase	NA	NA	NA	NA
WP_029820466.1\|4079897_4080914_-	lauroyl acyltransferase	NA	NA	NA	NA
WP_008572800.1\|4080912_4081353_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_008572798.1\|4081461_4083339_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.8e-37	35.5
WP_011348769.1\|4083532_4083853_+	hypothetical protein	NA	NA	NA	NA
WP_033478669.1\|4084268_4085456_-\|integrase	integrase	V9IQN0	Stenotrophomonas_phage	7.3e-109	50.9
WP_074053327.1\|4085882_4086155_-	hypothetical protein	NA	NA	NA	NA
WP_008572787.1\|4086151_4086376_-	hypothetical protein	NA	NA	NA	NA
WP_008572785.1\|4086372_4086645_-	hypothetical protein	NA	NA	NA	NA
WP_008572783.1\|4086637_4086820_-	hypothetical protein	NA	NA	NA	NA
WP_033478668.1\|4086812_4087238_-	hypothetical protein	V9IQL6	Stenotrophomonas_phage	4.8e-18	45.2
WP_008572778.1\|4087316_4087589_-	hypothetical protein	NA	NA	NA	NA
WP_008572775.1\|4087588_4087861_-	hypothetical protein	NA	NA	NA	NA
WP_014091199.1\|4087872_4088091_-	hypothetical protein	NA	NA	NA	NA
WP_033478667.1\|4088417_4091114_-	toprim domain-containing protein	V9IQW5	Stenotrophomonas_phage	0.0e+00	69.6
WP_008572770.1\|4091123_4091336_-	hypothetical protein	NA	NA	NA	NA
WP_008572768.1\|4091332_4091611_-	hypothetical protein	NA	NA	NA	NA
WP_008572766.1\|4091621_4091942_-	hypothetical protein	V9IQW3	Stenotrophomonas_phage	2.0e-24	58.7
WP_008572763.1\|4091944_4092202_-	DNA-binding protein	A0A2H4JE67	uncultured_Caudovirales_phage	6.6e-07	44.6
WP_008572760.1\|4092272_4092710_+	helix-turn-helix transcriptional regulator	E5E3P4	Burkholderia_phage	2.1e-08	30.5
WP_077708923.1\|4092977_4094111_-	N-acetylmuramoyl-L-alanine amidase	NA	NA	NA	NA
WP_126952649.1\|4094110_4094560_-	hypothetical protein	NA	NA	NA	NA
WP_008572755.1\|4094693_4095683_-	phage late control D family protein	A0A2H4JAV0	uncultured_Caudovirales_phage	4.7e-85	49.4
WP_008572753.1\|4095679_4096081_-\|tail	phage tail protein	V9IQX3	Stenotrophomonas_phage	4.6e-39	62.1
WP_008572751.1\|4096093_4098964_-\|tail	phage tail tape measure protein	V9IQL1	Stenotrophomonas_phage	3.4e-200	48.8
4097907:4097924	attR	NA	NA	NA	NA
WP_005922203.1\|4098993_4099107_-\|tail	GpE family phage tail protein	A0A0M4R2P3	Salmonella_phage	4.2e-06	68.6
WP_008572745.1\|4099115_4099418_-\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	2.2e-25	67.4
WP_008572743.1\|4099463_4099973_-\|tail	phage major tail tube protein	V9IQX1	Stenotrophomonas_phage	6.2e-73	80.5
WP_008572742.1\|4100002_4101169_-\|tail	phage tail sheath protein	E5FFG9	Burkholderia_phage	4.2e-133	62.7
WP_008572739.1\|4101180_4101540_-	GPW/gp25 family protein	V9IQW0	Stenotrophomonas_phage	7.3e-36	64.4
WP_008572737.1\|4101536_4102100_-\|plate	phage baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	1.8e-25	47.5
WP_008572736.1\|4102243_4102918_-	hypothetical protein	NA	NA	NA	NA
WP_008572734.1\|4102921_4103215_-	hypothetical protein	NA	NA	NA	NA
WP_008572732.1\|4103292_4105092_-	hypothetical protein	V9IQX0	Stenotrophomonas_phage	1.4e-82	38.5
WP_033478665.1\|4105104_4105650_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	4.2e-51	56.0
WP_008572729.1\|4105642_4106533_-\|plate	baseplate J/gp47 family protein	V9IQV9	Stenotrophomonas_phage	1.3e-81	52.7
WP_008572727.1\|4106950_4108030_+	type III secretion system YopJ family effector AvrXv4	NA	NA	NA	NA
WP_008572725.1\|4108037_4108487_-	phage virion morphogenesis protein	V9IQH0	Stenotrophomonas_phage	2.4e-36	52.7
WP_008572723.1\|4108474_4108894_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	6.7e-41	65.9
WP_008572722.1\|4108890_4109379_-	hypothetical protein	V9IQW8	Stenotrophomonas_phage	1.5e-28	53.1
WP_008572719.1\|4109378_4110017_-	glycoside hydrolase family 19 protein	V9IQK6	Stenotrophomonas_phage	4.6e-49	60.9
WP_008572717.1\|4110016_4110292_-\|holin	phage holin family protein	V9IQV8	Stenotrophomonas_phage	2.3e-21	59.8
WP_005929454.1\|4110284_4110641_-	membrane protein	V9IQG9	Stenotrophomonas_phage	3.5e-22	56.1
WP_008572714.1\|4110645_4110855_-\|tail	tail protein X	K4PAW7	Burkholderia_phage	2.0e-14	58.0
WP_008572712.1\|4110854_4111322_-\|head	head completion/stabilization protein	V9IQW6	Stenotrophomonas_phage	1.8e-31	49.7
WP_008572710.1\|4111420_4112140_-\|terminase	terminase	Q9ZXM2	Pseudomonas_virus	3.1e-70	63.8
WP_008572708.1\|4112143_4113163_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	7.9e-136	70.0
WP_008572705.1\|4113209_4114052_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	1.1e-69	54.4
WP_008572703.1\|4114194_4115958_+\|terminase	terminase ATPase subunit family protein	V9IQL5	Stenotrophomonas_phage	1.9e-270	76.7
WP_008572701.1\|4115957_4116980_+\|portal	phage portal protein	A0A2H4J922	uncultured_Caudovirales_phage	3.1e-140	71.8
WP_043908800.1\|4117005_4117251_+	Com family DNA-binding transcriptional regulator	V9IQK2	Stenotrophomonas_phage	6.3e-15	53.8
WP_046932103.1\|4117168_4117870_+	site-specific DNA-methyltransferase	V9IQV5	Stenotrophomonas_phage	7.2e-104	74.8

DBSCAN-SWA_4

4313046 : 4321089

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031424434.1\|4313046_4314102_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.6e-83	47.7
WP_031424432.1\|4314157_4315045_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.3e-94	57.8
WP_011052372.1\|4315041_4315599_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.6e-45	48.1
WP_008576951.1\|4315595_4316495_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.0e-26	36.5
WP_008576953.1\|4316835_4318002_+	nucleotide sugar dehydrogenase	M1HV26	Paramecium_bursaria_Chlorella_virus	4.7e-116	57.6
WP_008576956.1\|4318291_4319695_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.9e-47	29.8
WP_008576959.1\|4319742_4321089_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	4.4e-33	27.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP018474

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 12729

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074066098.1\|356_1427_+	tyrosine protein phosphatase	NA	NA	NA	NA
WP_074053068.1\|1786_2269_+	hypothetical protein	NA	NA	NA	NA
WP_074053065.1\|2484_5601_+	TAL effector repeat-containing protein	NA	NA	NA	NA
WP_074053069.1\|5906_6356_+	hypothetical protein	NA	NA	NA	NA
WP_046932117.1\|6352_7105_+	hypothetical protein	NA	NA	NA	NA
WP_046932070.1\|7221_7566_-	hypothetical protein	NA	NA	NA	NA
WP_046932075.1\|9284_9548_+	hypothetical protein	NA	NA	NA	NA
WP_040942451.1\|10116_10515_+	hypothetical protein	NA	NA	NA	NA
WP_019238181.1\|10779_11019_+	hypothetical protein	NA	NA	NA	NA
WP_046932085.1\|11034_11628_+	hypothetical protein	NA	NA	NA	NA
WP_046932118.1\|11680_11908_+	hypothetical protein	NA	NA	NA	NA
WP_046932119.1\|12101_12446_+	hypothetical protein	NA	NA	NA	NA
WP_046932121.1\|12540_12729_+	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	5.5e-11	62.7

DBSCAN-SWA_2

16149 : 19047

Halomonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046932094.1\|16149_16788_+	AAA family ATPase	B0ZSI1	Halomonas_phage	1.9e-18	36.3
WP_046932095.1\|16784_17126_+	hypothetical protein	NA	NA	NA	NA
WP_046932122.1\|17398_17863_+	DUF2840 domain-containing protein	NA	NA	NA	NA
WP_074053066.1\|17867_18464_+	signal peptidase I	NA	NA	NA	NA
WP_046932097.1\|18456_19047_+	lytic transglycosylase domain-containing protein	A0A0A8J856	Ralstonia_phage	2.2e-05	38.1

DBSCAN-SWA_3

24887 : 28213

Mycobacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019238169.1\|24887_25427_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	1.5e-24	33.9
WP_046932102.1\|25522_25915_+	hypothetical protein	NA	NA	NA	NA
WP_046932104.1\|26427_27249_+	hypothetical protein	NA	NA	NA	NA
WP_019238166.1\|27931_28213_-	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	3.2e-15	49.5

DBSCAN-SWA_4

40643 : 42821

Phaeocystis_globosa_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046932116.1\|40643_42821_+	DNA topoisomerase III	R4TFQ7	Phaeocystis_globosa_virus	7.4e-06	21.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018475

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018474

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection