CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017291	Corynebacterium pseudotuberculosis strain MEX30 chromosome, complete genome	4 crisprs	cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5,DEDDh,WYL,cas4,csa3	1	5	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017291_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017291_1

22345-22557

TypeI-E

NA:I-C,I-E,II-B

Consensus_repeat	Method
GGAACTACCTCCGCATACGCGGAGAAAAGT	CRT
CCTCCGCATACGCGGAGAAAAGT	CRISPRCasFinder
GGAACTACCTCCGCATACGCGGAGAAAAG	PILER-CR

3 spacers

cas2,cas1,cas3,cas6e,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NZ_CP017291_1

>merge|NZ_CP017291|1|22345-22557|CRT,CRISPRCasFinder,PILER-CR
GGGAACTCCTCCGCATACGCGGAGAAAAGTCAGCAACGGTGAGAATCTTTTTTTCGCGACGGGAACTACCTCCGTATACGCGGAGAAAAGTTGGTGTTCCAATAATGCTTTTGCTGCCAACTGGAACTACCTCCGCATACGCGGAGAAAAGTGCCTGATTCACTGTCAGCCCGTAAAGCTCACGGAACTACCTCCGCATACGCGGAGAAAAGA

>NZ_CP017291|1|1|22345-22557|CRT
GGGAACTCCTCCGCATACGCGGAGAAAAGT	CAGCAACGGTGAGAATCTTTTTTTCGCGACG
GGAACTACCTCCGTATACGCGGAGAAAAGT	TGGTGTTCCAATAATGCTTTTGCTGCCAACT
GGAACTACCTCCGCATACGCGGAGAAAAGT	GCCTGATTCACTGTCAGCCCGTAAAGCTCAC
GGAACTACCTCCGCATACGCGGAGAAAAGA

>NZ_CP017291|1|1|22352-22557|CRISPRCasFinder
CCTCCGCATACGCGGAGAAAAGT	CAGCAACGGTGAGAATCTTTTTTTCGCGACGGGAACTA
CCTCCGTATACGCGGAGAAAAGT	TGGTGTTCCAATAATGCTTTTGCTGCCAACTGGAACTA
CCTCCGCATACGCGGAGAAAAGT	GCCTGATTCACTGTCAGCCCGTAAAGCTCACGGAACTA
CCTCCGCATACGCGGAGAAAAGA

>NZ_CP017291|1|1|22406-22556|PILER-CR
GGAACTACCTCCGTATACGCGGAGAAAAG	TTGGTGTTCCAATAATGCTTTTGCTGCCAACT
GGAACTACCTCCGCATACGCGGAGAAAAG	TGCCTGATTCACTGTCAGCCCGTAAAGCTCAC
GGAACTACCTCCGCATACGCGGAGAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017291.1\|WP_032802277.1\|27530_29144_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cls000721_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP017291.1\|WP_014522929.1\|31579_32620_-\|transposase	unknown	unknown	gnl\|CDD\|226202
NZ_CP017291.1\|WP_014366227.1\|20719_20911_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_032802276.1\|29140_29734_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP017291.1\|WP_014366232.1\|33027_33951_+\|phospholipase-D	unknown	unknown	gnl\|CDD\|176518
NZ_CP017291.1\|WP_014733049.1\|26609_27320_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NZ_CP017291.1\|WP_014522924.1\|18987_19758_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP017291.1\|WP_014366222.1\|18389_18926_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NZ_CP017291.1\|WP_075142646.1\|23901_26589_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP017291.1\|WP_014366217.1\|12426_13206_+\|YwiC-like-family-protein	unknown	unknown	gnl\|CDD\|379525
NZ_CP017291.1\|WP_014523730.1\|15678_16764_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP017291.1\|WP_014367523.1\|22574_22946_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP017291.1\|WP_075142644.1\|16765_17539_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP017291.1\|WP_014366221.1\|17640_18312_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_014522928.1\|30812_31505_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP017291.1\|WP_014300358.1\|14680_15682_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380535
NZ_CP017291.1\|WP_032802275.1\|29733_30801_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP017291.1\|WP_129559136.1\|21712_22015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_014300357.1\|13532_14048_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214520
NZ_CP017291.1\|WP_014367522.1\|22945_23899_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
NZ_CP017291.1\|WP_032802277.1\|27530_29144_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	0.00762068
NZ_CP017291.1\|WP_014522929.1\|31579_32620_-\|transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00655325
NZ_CP017291.1\|WP_032802276.1\|29140_29734_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.93072e-07
NZ_CP017291.1\|WP_014366232.1\|33027_33951_+\|phospholipase-D	gnl\|CDD\|176518	cd08576, GDPD_like_SMaseD_PLD, Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline and lysophosphatidic acid (LPA), which is a multifunctional phospholipid involved in platelet aggregation, endothelial hyperpermeability, and pro-inflammatory responses. Loxosceles spider venoms' SMases D are the principal toxins responsible for dermonecrosis and complement dependent haemolysis induced by spider venom. Due to amino acid substitutions at the entrance to the active-site pocket, some members lack activity. The typical GDPD domain consists of a TIM barrel and a small insertion domain named as the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. Although proteins in this family contain a non-typical GDPD domain which lacks the GDPD-I, their catalytic mechanisms are based on Mg2+-dependent acid-base reactions similar to GDPD proteins. They might be divergent members of the GDPD family. Moreover, this family does not belong to phospholipase D (PLD) superfamily, since it lacks the conserved HKD sequence motif that characterizes the catalytic center of the PLD superfamily. It belongs to the superfamily of PLC-like phosphodiesterases.	7.16899e-90
NZ_CP017291.1\|WP_014522924.1\|18987_19758_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	5.95772e-21
NZ_CP017291.1\|WP_014366222.1\|18389_18926_+\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	2.26866e-65
NZ_CP017291.1\|WP_075142646.1\|23901_26589_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	8.52334e-51
NZ_CP017291.1\|WP_014366217.1\|12426_13206_+\|YwiC-like-family-protein	gnl\|CDD\|379525	pfam14256, YwiC, YwiC-like protein. The YwiC-like protein family includes the B. subtilis YwiC protein, which is functionally uncharacterized. This domain family is found in bacteria, and is approximately 130 amino acids in length. There is a single completely conserved residue G that may be functionally important.	2.86564e-35
NZ_CP017291.1\|WP_014523730.1\|15678_16764_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.93829e-61
NZ_CP017291.1\|WP_014367523.1\|22574_22946_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	3.51848e-22
NZ_CP017291.1\|WP_014733049.1\|26609_27320_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.17921e-34
NZ_CP017291.1\|WP_075142644.1\|16765_17539_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	3.48295e-103
NZ_CP017291.1\|WP_014522928.1\|30812_31505_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	6.80198e-27
NZ_CP017291.1\|WP_014300358.1\|14680_15682_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380535	cd06312, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	5.09443e-86
NZ_CP017291.1\|WP_032802275.1\|29733_30801_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.30424e-81
NZ_CP017291.1\|WP_014300357.1\|13532_14048_+\|hypothetical-protein	gnl\|CDD\|214520	smart00112, CA, Cadherin repeats. Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.	0.000416352
NZ_CP017291.1\|WP_014367522.1\|22945_23899_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.18457e-72

>NZ_CP017291.1|WP_129559136.1|21712_22015_-|hypothetical-protein
MMDFYDAITRIEATPSVSVRYGDSGVQDFELEEFLAGLVQEKAVVSDVEAKREFLSWFDEDDEWLDPDWDAPMVEQTVRDLHVFAGLEPKVEIHIPMPPA
>NZ_CP017291.1|WP_014366227.1|20719_20911_+|hypothetical-protein
MKSGTIKLTNGDVHHEKQLDKDASCVIKEEDADAASERKHSLKWSVDSEEKRRGVRNHIHQAA
>NZ_CP017291.1|WP_014522924.1|18987_19758_+|rhomboid-family-intramembrane-serine-protease
MFHENGGMSDPRILHAAYKQAPVTVLLSLSTLIIFLITAFQSQSITDNLYDSWIGTHWILYTPEMHEPLGMLRAIGSMFLHIGPGHLAINIFLLFFLGREIEQCIGSALFCAAYFISGLGASLMIMIMDPLSPTAGASGAIYGLMAIMVAIAITRKTDIRAPLILVAVNVGYSLIADNVSLWGHIGGLVAGSVVALPLMAFHRKHVIAGGTGGFLVYGTPRNHHAFTKDRLITWFVVAAIVVCEAIGIWIVGMKLL
>NZ_CP017291.1|WP_014366222.1|18389_18926_+|peptidylprolyl-isomerase
MMVRMTLKTATAILHTNRGDVAIELFGNHAPKTVENFVTLADGSADYKTENASGTTEGPFYDGAVFHRIIDGFMIQGGDPTGTGRGGPGYMFADEFHPELQFDRPFLLAMANAGPGTNGSQFFITVVPTPHLNNHHTIFGEVTDPASQKVVMDIAQTATDRMDRPVEPVVIESVEITE
>NZ_CP017291.1|WP_014366221.1|17640_18312_-|hypothetical-protein
MNSSTIRGAILVTKAAYDKYANYRDRKTREAYDALLNAADSYDDIHKDVKANVTEFYDQSQERVSSLTEQARKRLDSAIADAAAAKDNTVKTVNKKSKKAQKAARKAAKSAKKSAAPKKQPSFGKRLFNFSVFTTILATIGAVAYYFLSKRDVVSTEPPHVEDFGADSVNTEESRLVYSTQTPVDDEEEHVSSPEEGATERDEKLLGSLEDQLRQHTDSKDTK
>NZ_CP017291.1|WP_075142644.1|16765_17539_+|sugar-ABC-transporter-ATP-binding-protein
MDMSTTPIIELRDITKSYGAFDALRGVNLSVASGEVTCVLGDNGAGKSTLIKILSGLHKQSSGELLIDGQPVTFSGPREALDNGIATVHQNLAVVGQMSVWRNFFLGQELTGFWGRLRESEMRSIAQEQLKTMGIDLPDIDVEVESLSGGQRQVVAIARAVYFGARVIILDEPTAALGVKQSGMVLRFVAAARDKGLGVVLITHNPHHAYLVGDRFTILNLGNQILNASRDQVTLEQLTQQMAGGGELEALSHELSR
>NZ_CP017291.1|WP_014523730.1|15678_16764_+|ABC-transporter-permease
MIIPRPTAQSAAASTADVGTATKSDDRLRRRTGFSALIRRPEFASLLGAVAIFVLFLSVAPSFRSIDALTTVLYASSTLGIVAVSVGLLMIGSEFDLSSGVAVTTAALAATMLNYNLHLNSWVGALLSLFIALAIGALNGYLVTKTGIDSFLITLAAFLMLQGLNLAITKLVTSQVATPSIADMEGFPSAQKVFAGTVHIGSVSVRATVFWWIFFVAVGSWLLFKTRFGNWIFAVGGDANAARASGVPVARVKIILFMFVGFAAWFVGMHNLFTFDSIQAGQGVGNEFLYIIAAVIGGCAMTGGRGTIIGTAIGALIFGMTNQGIVYAGWNPDWFKFFLGAMLLFAVLTNTSFATLTKGRK
>NZ_CP017291.1|WP_014300358.1|14680_15682_+|substrate-binding-domain-containing-protein
MKNLRFPLHAAVITLAASVVLSACSATGGAPRSSNITGGQSGGVDTPRYVVAMVTHGAPGDTFWDLIRKGAEDAAKKSNIELRYASDPEAPNQSNLIQNAIDSKVDGIAVTMPNAEAIGPTAKKAVAAKIPTVALNAGLDAYQKYDISAFFGQEEKVAGTLAGKRLAQDGAKHALCVIHEQGNSSQEARCAGLKEGLADADVEILYVNGKDMTSVQSTVQAKLAQDKSIDWVMGLVAPVALTSVDAVKNSGSSAKISTFDTNAQLVTAIKNGTVQWAVDQQPYLQGYLAIDALWLAQRNGSTVGGNRPVYTGPSFVDATNVDKIADSAKEGLR
>NZ_CP017291.1|WP_014300357.1|13532_14048_+|hypothetical-protein
MSSNKNVALRNLAVAAGATALGLGAVFGTAGAAMAADEPATPPAVNAEKPAPSIEQDTPVDVDKPETLDPDEKTPEIDDRDDVLKYEPTTVKAGHTAYAEIKGDVDEDTIFGYSQSGIPEGWFVSVDEETGKVSVSASPDAKPGDTYTVKVKVVDLDGKVTWAEAPFTVGE
>NZ_CP017291.1|WP_014366217.1|12426_13206_+|YwiC-like-family-protein
MTRVSTPRKSRRSPGWIPNQHGAWFMVTVPAIIGVALAPAWIDIPLLLLWWCGYFAFFAASVWMRGRYRKRHLPPLVTYGVVTGLSGLVVLLCQWQLVVWIPAFLPLIGIAVYETWRRRPRSLLSGLATVCAACLILPVITWAGDGLTVRVWAICGVLLLYFAGSIPYVKTLIRERGSRPWLIGSITFHIVFLIIACVAAAYQMVHVAVAVVAGILLLRAWLMPVTGARRERLWTPRQVGLLDALLGVLVVLTAVLPPA
>NZ_CP017291.1|WP_014367523.1|22574_22946_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MFTVIQGHNLPNHLNGYLSRFLSEVDAGLYVGVLSRAVMENLWEKCQSVDLAGSLTLIHPQYDAEQGFRIRTTGKQRRPVVDLDGLFLSARGLIEDVRFADPLDEADAIIPDEVLEDFCPESE
>NZ_CP017291.1|WP_014367522.1|22945_23899_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSYSNESLAFSTIPASEQIRLEDRVSFLYLEYCLIRQDRTGVIAVSRGDEKAPAELKDLPIKARIQLPVGGIAVLMLGPGTSISQPAATSCARAGVSVLFTGGGGVQAYSLSTPLTSSARWAIAQARLASNEAKQRTAARILYKRQLGIEEIEADSIAVMRGIEGRTIRNLYKRLSAKYKIKNFKRDTNATDPVNTNLNLGNSILYGCAASACAALGINPALGIIHRGDIRSLLFDLADLYKPTLTIPAAFKCANNDDDGSEFRRLVRSEIVKQDLLKNMIHIMMEILAPYLPERTDDRLIGGRNREVPGHTQYGGK
>NZ_CP017291.1|WP_075142646.1|23901_26589_-|CRISPR-associated-helicase/endonuclease-Cas3
MTNAGTNHHVLWAKFDNLWEPYPLLAHLLDTATAATCLFNHWLRKGLRDRLSTELGPDVEKILGFVAGIHDLGKANPYFQAQRKNKKEEWLTLRDAIQKAGFPLSNGTSAFFEETKEKRRHENITLSILGWEITQLLQVKDVWPQLAVIGHHGIFSTPRFLSDEDDLEDIEDIFDDNGWSPTHELLVSSLLQAVGIGKQPEISHISPASAILISGLVVLADRIASQSEMAADGLQALQKEELFFHQPEKWIANRKAFCREIIENTVGTYHPWESEAAGIRAVLGDYEPRFTQKAALNAGDGLFNVMETTGAGKTEAALLRHVKRKERLLFFLPTQATTNAIMERIGKIFDGTPNVASLAHGLAVTEDFYAHPVVPAQGSSDDANYKDNGGLYPTEFVRSAGTPRLLAPVCVGTIDQALLGALPSKFNHLRLLALANAHVVVDEVHTMDQYQSELMSGLLEWWSATDTPVTLLTATMPAWQREKFHLSYTGKEPHFKGVFPSLEDWSTPSKNTETSQENIPTEAFTIPISIDKIAHNEIVDSHVQWVIEQRKLFPQARIGVICNTVGRAQSIAEALSHESPIVLHSRMTAGHRKEAATKLERAIGKKGTANATLVIGTQAIEASLDIDLDLLRTELCPAPSLIQRAGRLWRRLDPQRKVRVPGMAGKELTIVVMDSPSSEQTLPYLRSQLYRVESWLKQRDRIEFPSDIQDFIDATTPGLQELFLRVSLPEDCGSAEERETLDDDYLDEVAAHVIKQRQAGTSRIDFAKHGKSRQVLAPDCVVEDFLQITSANNPEERATRLIDYPTLSAILCDPTGTIPGAWTDSVEKLIAISAKDRESLRRALRASISIPDSKKFLPITSRKIPLSEAKNLLSGYSAVHIQPDEYDLQSGLKGT
>NZ_CP017291.1|WP_014733049.1|26609_27320_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MPKATYWTHFPAHIALNKSLILGDFATENSKNKPHWDIDDPVFRHRAVMALFPEHQSDNARADSNILFRLEVLPGQEPYFFIQSSIKPSNHNLDKHIETRQVDLMSPEAGTPIEFRLSINAVRRKTIDAAKDAKRKIKTTCLPLDALSSDPTETSAGQWVKEKLSPALENIDIVRHGRQVLGANRNGKKTSTRTVQVDTIDGFAHVKDPAELQKILIHGIGRAKSYGCGMLTFRPI
>NZ_CP017291.1|WP_032802277.1|27530_29144_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKSNVFKDFPFIKTNKGPMTVEEFFHSSHEKSLHLDLSIPGYEYGAIWRLLTSLTAVLMQRDPLFLKGKETSSELRFDPEFISQILDDLGSKISLTEGKNLFFQRTLLEGENPKDTARYVGPGKDPAWKLSPTAPSEKSQVYWNLEKLKPESLEAVDAIVALMVFSMYSFTGNSKYDGAKCLNGSPGIRFLGGGNTATEFIIEAQTPLLSLLKSIPSEWCEPGGLPAWLDRTGAESRKPNGEMHPLWRATWSSNTAACCWDGDTLIGVKIGGIPPEWYALEMGSKSEARKEWWDQRNTEDPFYFYKPDNGGALKAKRLDLSRDLTELAVEWVAEDLPTALVERVRGRALRVDFKKEDSLLFIRHQIGGNASSAMIRESVVSKARKQQWVFDPTGALQKEVRGKAVFILSLRNIVLSPFRRENKSDRDRGRRVLDSLASERPKMNETFWREIAPIYEEFILYFTEQVSGDETRKEVRAQAKKTLKELGKDAVRTAQKAFDMVLEPYLLQNPSQAYEVRRRIHSYLASTIAETNEGDQK
>NZ_CP017291.1|WP_032802276.1|29140_29734_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTTSRPKQSWTPLVAEFAQRKKDKEFRAKRSALRAGAGTYTEFRAYSYVLPFLGEKASAAQRTALLRCMAALAEYPDVVSSGEKATASSVGQWVNRVAFDGKQGQSEPDSMVASRIKYLHTQDLEEAISSLRRIMAFADRKNVTTKLNPYQFVELFWYWGNGFTDASTKHRLSVLRDFYSTKQKENTDPQSSSEGEK
>NZ_CP017291.1|WP_032802275.1|29733_30801_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRHLTIHVVASVPYSNLNRDDSGTPKNVRRGGVTCALLSSQSIKKGIRTKYEDASLDTSVRSGRIADDVLERAKVLAPEADTKALEKAVKKIIGTLTKAAEVNESEDESDRSIWLSAEELEAAAVSVVEQAEKKDFIEDGRTGSLAIAAFGRMFAAAPKKGTEAALSVSPAVTTHGVTIATDYFSTVDDIRERNRDTGATYLGVAQYTTGVFYRTVTIDKEQLRESWTGLDREDAKENLAALVNAIIYGLPRGKQRSTAPFVQPALILAEEQSYRCAYDFESPVQADAREGGYLKPTMEELKRQYDSARAFDADNFGETQVVSGTYPEVSEFFAGAKYADKNGFIDEVVAWIQR
>NZ_CP017291.1|WP_014522928.1|30812_31505_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTTTSVYLRLAGPLQSWAGPAVTGNFVRTAPIPTHSALVGLIAGACGYRRDEWPDWLDRLSFRVRVDHPGKFVDDFQTVSAHEEEMLFRERLIFATGKRPSAKTTRLTPDGRGMTSIIQRTYLAEAEFIVEVASDTHGELLRDALRAPKFSTYLGRKAFAPAFPFFLGATADVDVLHRIPACDLSGTKRDTARVQIHHRSAGLQTSAEHINVPAVQERSDWLEKTKALFT
>NZ_CP017291.1|WP_014522929.1|31579_32620_-|transposase
MIMASHPYRNHCNVCGNLLKKNGKTSTGKTRYRCKGCGASSTATRSGTLHQRQMKDFITWLLGPTSRYNNDISRAQRRSMSWCWQVPVPQPEMLDNAYILVMDKGASFRPEHLLVAYNSSHVQGWKWVDKDNKTACMQVHDHFSQPSAAVIDGGQSTAQTIQAIWPGIPVRRCLSHIRKSVDQKTSQTPRTQPAIEIKELTDSLKNVYTSEQAKLWLARYARWEDRWKELLKHRTNVSKDNCSIDGYEWEWTHKELRTIRFMYRKLIKKEELFLPFYGSDIVAHNAILSRRDSQLGETISTDITNLFSAHRGINHDHGCRMVEWYLNSKTESPFIPERIISHDHWR
>NZ_CP017291.1|WP_014366232.1|33027_33951_+|phospholipase-D
MREKFALLLSIIMAIMLPVGNAAAAPVVHNPASTANRPVYAIAHRVLTTQGVDDAVAIGANALEIDFTAWGRGWWADHDGIPTSAGATAEEIFKHIADKRKQGANITFTWLDIKNPDYCRDARSVCSINALRDLARKYLEPAGVRVLYGFYKTVGGPAWKTITADLRDGEAVALSGPAQDVLNDFARSGNKILTKQKIADYGYYDINQGFGNCYGTWNRTCDQLRKSSEARDQGKLGKTFGWTIATGQDARVNDLLGKANVDGLIFGFKMTHFYRHPDTENSFKAIKRWVDKHSATHHLATVADNPW

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Crispr_ID: NZ_CP017291_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017291_2

27371-27442

TypeI-E

Consensus_repeat	Method
TTCCTCGCGTCCTGCGGGGGTAG	CRISPRCasFinder

1 spacers

cas6e,cas3,cas1,cas2,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NZ_CP017291_2

>merge|NZ_CP017291|2|27371-27442|CRISPRCasFinder
TTCCTCGCGTCCTGCGGGGGTAGTTCATGTTAGGTTTTCGGGTTGACTTTTCCTCGCGTCCTGCGGGGGTAA

>NZ_CP017291|2|2|27371-27442|CRISPRCasFinder
TTCCTCGCGTCCTGCGGGGGTAG	TTCATGTTAGGTTTTCGGGTTGACTT
TTCCTCGCGTCCTGCGGGGGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017291.1\|WP_032802277.1\|27530_29144_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cls000721_cas8e_CAS-I-E	gnl\|CDD\|378189
NZ_CP017291.1\|WP_014522929.1\|31579_32620_-\|transposase	unknown	unknown	gnl\|CDD\|226202
NZ_CP017291.1\|WP_014366227.1\|20719_20911_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_032802276.1\|29140_29734_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	mkCas0096_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP017291.1\|WP_014366234.1\|34878_35865_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|182463
NZ_CP017291.1\|WP_014522933.1\|36978_38031_+\|iron-siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
NZ_CP017291.1\|WP_014366232.1\|33027_33951_+\|phospholipase-D	unknown	unknown	gnl\|CDD\|176518
NZ_CP017291.1\|WP_014366233.1\|34003_34870_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP017291.1\|WP_014522924.1\|18987_19758_+\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP017291.1\|WP_014366222.1\|18389_18926_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223725
NZ_CP017291.1\|WP_075142646.1\|23901_26589_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_CP017291.1\|WP_014523733.1\|35864_36932_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|182464
NZ_CP017291.1\|WP_014367523.1\|22574_22946_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	pfam09707_cas2_CAS-I-E	gnl\|CDD\|378244
NZ_CP017291.1\|WP_075142644.1\|16765_17539_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP017291.1\|WP_014366221.1\|17640_18312_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_014522928.1\|30812_31505_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP017291.1\|WP_032802275.1\|29733_30801_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
NZ_CP017291.1\|WP_129559136.1\|21712_22015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_014733049.1\|26609_27320_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09727_cas6e_CAS-I-E	gnl\|CDD\|187858
NZ_CP017291.1\|WP_014367522.1\|22945_23899_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
NZ_CP017291.1\|WP_032802277.1\|27530_29144_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	0.00762068
NZ_CP017291.1\|WP_014522929.1\|31579_32620_-\|transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.00655325
NZ_CP017291.1\|WP_014366233.1\|34003_34870_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	2.72604e-116
NZ_CP017291.1\|WP_032802276.1\|29140_29734_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	5.93072e-07
NZ_CP017291.1\|WP_014366234.1\|34878_35865_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|182463	PRK10440, PRK10440, iron-enterobactin ABC transporter permease.	7.09769e-96
NZ_CP017291.1\|WP_014522933.1\|36978_38031_+\|iron-siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	5.68021e-81
NZ_CP017291.1\|WP_014366232.1\|33027_33951_+\|phospholipase-D	gnl\|CDD\|176518	cd08576, GDPD_like_SMaseD_PLD, Glycerophosphodiester phosphodiesterase-like domain of spider venom sphingomyelinases D, bacterial phospholipase D, and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase-like domain (GDPD-like) present in sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.4) from spider venom, the Corynebacterium pseudotuberculosis Phospholipase D (PLD)-like protein from pathogenic bacteria, and the Ajellomyces capsulatus H143 PLD-like protein from ascomycetes. Spider SMases D and bacterial PLD proteins catalyze the Mg2+-dependent hydrolysis of sphingomyelin producing choline and ceramide 1-phosphate (C1P), which possess a number of biological functions, such as regulating cell proliferation and apoptosis, participating in inflammatory responses, and playing a key role in phagocytosis. In the presence of Mg2+, SMases D can function as lysophospholipase D and hydrolyze lysophosphatidylcholine (LPC) to choline and lysophosphatidic acid (LPA), which is a multifunctional phospholipid involved in platelet aggregation, endothelial hyperpermeability, and pro-inflammatory responses. Loxosceles spider venoms' SMases D are the principal toxins responsible for dermonecrosis and complement dependent haemolysis induced by spider venom. Due to amino acid substitutions at the entrance to the active-site pocket, some members lack activity. The typical GDPD domain consists of a TIM barrel and a small insertion domain named as the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. Although proteins in this family contain a non-typical GDPD domain which lacks the GDPD-I, their catalytic mechanisms are based on Mg2+-dependent acid-base reactions similar to GDPD proteins. They might be divergent members of the GDPD family. Moreover, this family does not belong to phospholipase D (PLD) superfamily, since it lacks the conserved HKD sequence motif that characterizes the catalytic center of the PLD superfamily. It belongs to the superfamily of PLC-like phosphodiesterases.	7.16899e-90
NZ_CP017291.1\|WP_014522924.1\|18987_19758_+\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	5.95772e-21
NZ_CP017291.1\|WP_014366222.1\|18389_18926_+\|peptidylprolyl-isomerase	gnl\|CDD\|223725	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones].	2.26866e-65
NZ_CP017291.1\|WP_075142646.1\|23901_26589_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	8.52334e-51
NZ_CP017291.1\|WP_014523733.1\|35864_36932_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	1.10582e-87
NZ_CP017291.1\|WP_014367523.1\|22574_22946_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|378244	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978). This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799. Cas proteins are found adjacent to a characteristic short, palindromic repeat cluster termed CRISPR, a probable mobile DNA element.	3.51848e-22
NZ_CP017291.1\|WP_075142644.1\|16765_17539_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	3.48295e-103
NZ_CP017291.1\|WP_014522928.1\|30812_31505_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	6.80198e-27
NZ_CP017291.1\|WP_014367522.1\|22945_23899_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.18457e-72
NZ_CP017291.1\|WP_014733049.1\|26609_27320_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187858	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	1.17921e-34
NZ_CP017291.1\|WP_032802275.1\|29733_30801_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	1.30424e-81

>NZ_CP017291.1|WP_014733049.1|26609_27320_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MPKATYWTHFPAHIALNKSLILGDFATENSKNKPHWDIDDPVFRHRAVMALFPEHQSDNARADSNILFRLEVLPGQEPYFFIQSSIKPSNHNLDKHIETRQVDLMSPEAGTPIEFRLSINAVRRKTIDAAKDAKRKIKTTCLPLDALSSDPTETSAGQWVKEKLSPALENIDIVRHGRQVLGANRNGKKTSTRTVQVDTIDGFAHVKDPAELQKILIHGIGRAKSYGCGMLTFRPI
>NZ_CP017291.1|WP_075142646.1|23901_26589_-|CRISPR-associated-helicase/endonuclease-Cas3
MTNAGTNHHVLWAKFDNLWEPYPLLAHLLDTATAATCLFNHWLRKGLRDRLSTELGPDVEKILGFVAGIHDLGKANPYFQAQRKNKKEEWLTLRDAIQKAGFPLSNGTSAFFEETKEKRRHENITLSILGWEITQLLQVKDVWPQLAVIGHHGIFSTPRFLSDEDDLEDIEDIFDDNGWSPTHELLVSSLLQAVGIGKQPEISHISPASAILISGLVVLADRIASQSEMAADGLQALQKEELFFHQPEKWIANRKAFCREIIENTVGTYHPWESEAAGIRAVLGDYEPRFTQKAALNAGDGLFNVMETTGAGKTEAALLRHVKRKERLLFFLPTQATTNAIMERIGKIFDGTPNVASLAHGLAVTEDFYAHPVVPAQGSSDDANYKDNGGLYPTEFVRSAGTPRLLAPVCVGTIDQALLGALPSKFNHLRLLALANAHVVVDEVHTMDQYQSELMSGLLEWWSATDTPVTLLTATMPAWQREKFHLSYTGKEPHFKGVFPSLEDWSTPSKNTETSQENIPTEAFTIPISIDKIAHNEIVDSHVQWVIEQRKLFPQARIGVICNTVGRAQSIAEALSHESPIVLHSRMTAGHRKEAATKLERAIGKKGTANATLVIGTQAIEASLDIDLDLLRTELCPAPSLIQRAGRLWRRLDPQRKVRVPGMAGKELTIVVMDSPSSEQTLPYLRSQLYRVESWLKQRDRIEFPSDIQDFIDATTPGLQELFLRVSLPEDCGSAEERETLDDDYLDEVAAHVIKQRQAGTSRIDFAKHGKSRQVLAPDCVVEDFLQITSANNPEERATRLIDYPTLSAILCDPTGTIPGAWTDSVEKLIAISAKDRESLRRALRASISIPDSKKFLPITSRKIPLSEAKNLLSGYSAVHIQPDEYDLQSGLKGT
>NZ_CP017291.1|WP_014367522.1|22945_23899_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MSYSNESLAFSTIPASEQIRLEDRVSFLYLEYCLIRQDRTGVIAVSRGDEKAPAELKDLPIKARIQLPVGGIAVLMLGPGTSISQPAATSCARAGVSVLFTGGGGVQAYSLSTPLTSSARWAIAQARLASNEAKQRTAARILYKRQLGIEEIEADSIAVMRGIEGRTIRNLYKRLSAKYKIKNFKRDTNATDPVNTNLNLGNSILYGCAASACAALGINPALGIIHRGDIRSLLFDLADLYKPTLTIPAAFKCANNDDDGSEFRRLVRSEIVKQDLLKNMIHIMMEILAPYLPERTDDRLIGGRNREVPGHTQYGGK
>NZ_CP017291.1|WP_014367523.1|22574_22946_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MFTVIQGHNLPNHLNGYLSRFLSEVDAGLYVGVLSRAVMENLWEKCQSVDLAGSLTLIHPQYDAEQGFRIRTTGKQRRPVVDLDGLFLSARGLIEDVRFADPLDEADAIIPDEVLEDFCPESE
>NZ_CP017291.1|WP_129559136.1|21712_22015_-|hypothetical-protein
MMDFYDAITRIEATPSVSVRYGDSGVQDFELEEFLAGLVQEKAVVSDVEAKREFLSWFDEDDEWLDPDWDAPMVEQTVRDLHVFAGLEPKVEIHIPMPPA
>NZ_CP017291.1|WP_014366227.1|20719_20911_+|hypothetical-protein
MKSGTIKLTNGDVHHEKQLDKDASCVIKEEDADAASERKHSLKWSVDSEEKRRGVRNHIHQAA
>NZ_CP017291.1|WP_014522924.1|18987_19758_+|rhomboid-family-intramembrane-serine-protease
MFHENGGMSDPRILHAAYKQAPVTVLLSLSTLIIFLITAFQSQSITDNLYDSWIGTHWILYTPEMHEPLGMLRAIGSMFLHIGPGHLAINIFLLFFLGREIEQCIGSALFCAAYFISGLGASLMIMIMDPLSPTAGASGAIYGLMAIMVAIAITRKTDIRAPLILVAVNVGYSLIADNVSLWGHIGGLVAGSVVALPLMAFHRKHVIAGGTGGFLVYGTPRNHHAFTKDRLITWFVVAAIVVCEAIGIWIVGMKLL
>NZ_CP017291.1|WP_014366222.1|18389_18926_+|peptidylprolyl-isomerase
MMVRMTLKTATAILHTNRGDVAIELFGNHAPKTVENFVTLADGSADYKTENASGTTEGPFYDGAVFHRIIDGFMIQGGDPTGTGRGGPGYMFADEFHPELQFDRPFLLAMANAGPGTNGSQFFITVVPTPHLNNHHTIFGEVTDPASQKVVMDIAQTATDRMDRPVEPVVIESVEITE
>NZ_CP017291.1|WP_014366221.1|17640_18312_-|hypothetical-protein
MNSSTIRGAILVTKAAYDKYANYRDRKTREAYDALLNAADSYDDIHKDVKANVTEFYDQSQERVSSLTEQARKRLDSAIADAAAAKDNTVKTVNKKSKKAQKAARKAAKSAKKSAAPKKQPSFGKRLFNFSVFTTILATIGAVAYYFLSKRDVVSTEPPHVEDFGADSVNTEESRLVYSTQTPVDDEEEHVSSPEEGATERDEKLLGSLEDQLRQHTDSKDTK
>NZ_CP017291.1|WP_075142644.1|16765_17539_+|sugar-ABC-transporter-ATP-binding-protein
MDMSTTPIIELRDITKSYGAFDALRGVNLSVASGEVTCVLGDNGAGKSTLIKILSGLHKQSSGELLIDGQPVTFSGPREALDNGIATVHQNLAVVGQMSVWRNFFLGQELTGFWGRLRESEMRSIAQEQLKTMGIDLPDIDVEVESLSGGQRQVVAIARAVYFGARVIILDEPTAALGVKQSGMVLRFVAAARDKGLGVVLITHNPHHAYLVGDRFTILNLGNQILNASRDQVTLEQLTQQMAGGGELEALSHELSR
>NZ_CP017291.1|WP_032802277.1|27530_29144_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKSNVFKDFPFIKTNKGPMTVEEFFHSSHEKSLHLDLSIPGYEYGAIWRLLTSLTAVLMQRDPLFLKGKETSSELRFDPEFISQILDDLGSKISLTEGKNLFFQRTLLEGENPKDTARYVGPGKDPAWKLSPTAPSEKSQVYWNLEKLKPESLEAVDAIVALMVFSMYSFTGNSKYDGAKCLNGSPGIRFLGGGNTATEFIIEAQTPLLSLLKSIPSEWCEPGGLPAWLDRTGAESRKPNGEMHPLWRATWSSNTAACCWDGDTLIGVKIGGIPPEWYALEMGSKSEARKEWWDQRNTEDPFYFYKPDNGGALKAKRLDLSRDLTELAVEWVAEDLPTALVERVRGRALRVDFKKEDSLLFIRHQIGGNASSAMIRESVVSKARKQQWVFDPTGALQKEVRGKAVFILSLRNIVLSPFRRENKSDRDRGRRVLDSLASERPKMNETFWREIAPIYEEFILYFTEQVSGDETRKEVRAQAKKTLKELGKDAVRTAQKAFDMVLEPYLLQNPSQAYEVRRRIHSYLASTIAETNEGDQK
>NZ_CP017291.1|WP_032802276.1|29140_29734_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MTTSRPKQSWTPLVAEFAQRKKDKEFRAKRSALRAGAGTYTEFRAYSYVLPFLGEKASAAQRTALLRCMAALAEYPDVVSSGEKATASSVGQWVNRVAFDGKQGQSEPDSMVASRIKYLHTQDLEEAISSLRRIMAFADRKNVTTKLNPYQFVELFWYWGNGFTDASTKHRLSVLRDFYSTKQKENTDPQSSSEGEK
>NZ_CP017291.1|WP_032802275.1|29733_30801_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSRHLTIHVVASVPYSNLNRDDSGTPKNVRRGGVTCALLSSQSIKKGIRTKYEDASLDTSVRSGRIADDVLERAKVLAPEADTKALEKAVKKIIGTLTKAAEVNESEDESDRSIWLSAEELEAAAVSVVEQAEKKDFIEDGRTGSLAIAAFGRMFAAAPKKGTEAALSVSPAVTTHGVTIATDYFSTVDDIRERNRDTGATYLGVAQYTTGVFYRTVTIDKEQLRESWTGLDREDAKENLAALVNAIIYGLPRGKQRSTAPFVQPALILAEEQSYRCAYDFESPVQADAREGGYLKPTMEELKRQYDSARAFDADNFGETQVVSGTYPEVSEFFAGAKYADKNGFIDEVVAWIQR
>NZ_CP017291.1|WP_014522928.1|30812_31505_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MTTTSVYLRLAGPLQSWAGPAVTGNFVRTAPIPTHSALVGLIAGACGYRRDEWPDWLDRLSFRVRVDHPGKFVDDFQTVSAHEEEMLFRERLIFATGKRPSAKTTRLTPDGRGMTSIIQRTYLAEAEFIVEVASDTHGELLRDALRAPKFSTYLGRKAFAPAFPFFLGATADVDVLHRIPACDLSGTKRDTARVQIHHRSAGLQTSAEHINVPAVQERSDWLEKTKALFT
>NZ_CP017291.1|WP_014522929.1|31579_32620_-|transposase
MIMASHPYRNHCNVCGNLLKKNGKTSTGKTRYRCKGCGASSTATRSGTLHQRQMKDFITWLLGPTSRYNNDISRAQRRSMSWCWQVPVPQPEMLDNAYILVMDKGASFRPEHLLVAYNSSHVQGWKWVDKDNKTACMQVHDHFSQPSAAVIDGGQSTAQTIQAIWPGIPVRRCLSHIRKSVDQKTSQTPRTQPAIEIKELTDSLKNVYTSEQAKLWLARYARWEDRWKELLKHRTNVSKDNCSIDGYEWEWTHKELRTIRFMYRKLIKKEELFLPFYGSDIVAHNAILSRRDSQLGETISTDITNLFSAHRGINHDHGCRMVEWYLNSKTESPFIPERIISHDHWR
>NZ_CP017291.1|WP_014366232.1|33027_33951_+|phospholipase-D
MREKFALLLSIIMAIMLPVGNAAAAPVVHNPASTANRPVYAIAHRVLTTQGVDDAVAIGANALEIDFTAWGRGWWADHDGIPTSAGATAEEIFKHIADKRKQGANITFTWLDIKNPDYCRDARSVCSINALRDLARKYLEPAGVRVLYGFYKTVGGPAWKTITADLRDGEAVALSGPAQDVLNDFARSGNKILTKQKIADYGYYDINQGFGNCYGTWNRTCDQLRKSSEARDQGKLGKTFGWTIATGQDARVNDLLGKANVDGLIFGFKMTHFYRHPDTENSFKAIKRWVDKHSATHHLATVADNPW
>NZ_CP017291.1|WP_014366233.1|34003_34870_-|ABC-transporter-ATP-binding-protein
MHTPKTTSTDLPTTAGISTDHMSALRTENVTLSWDKHVVSTDLSVDIPTGKFTAIIGPNGCGKSTLLKSCARILAPDTGSIYLNQHNLTHLHTKEIAKQLAFLPQSTITPTDITVEELVRRGRFPHHNWLHQWTAEDTRAVDAALNAASVKELTHKRVTDLSGGQRQRVWLAMVLAQNTPTVLLDEPTTFLDIAHQYQLLELARSLTTQLNRTVVAVLHDLQQAVRYADHLIVMKNGSIVATGSPQEVISAELISEVFNITVRTMLIDDQLIVIPTELPVPNVAMMQG
>NZ_CP017291.1|WP_014366234.1|34878_35865_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MTHRRSWYTALILTLLLAVSAAVAVSLPGAGITTAKVWSVFQGDDSSLAHTIVFSWRAPRIVTALFVGAALGIAGSLFQALTRNPLGSPDIIGFNTGAYTGVLLTMMAGMTSFASVAFGALAGGLATALAVMAFSVRVRIDGLRIILVGLGVSAMLSAFNRWLITRGDLNTALSAASWGAGTLNGIRWAAATPAVIALGIIVALALLLGSRIDILNLGDDTATALGLPVNPSKFVLLIVGVLLIATTTAIAGPISFIALASPHIAQRITASPRTPLLVSALTGATLLLVADIIAQRAFAPVQLPVGLVTVVIGGIYLLSLIASASRRA
>NZ_CP017291.1|WP_014523733.1|35864_36932_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MVSTASSNPSPIRGFLRKSQPNVQRTRRSLLVVVLLLAVLLVVGSIASVMIGARLIPLPEILNALFHPDSTNVSSTIVWDRRVPRTLLAIVAGMSLGLAGTLSQTLTRNPLADTGALGINSGAAFAIVVGIALFGASSPWAFLALALLGACGAAAVVYSVGTHRSATADPVRLVLSGVALSAILSGIGEGLSLVNPQAFDRLKSWMVGSVDVGTLMPLGIAGVGLTCGIVLTIACAHGLNALALGDAMATSIGASTARIRFISFIAVVILAASATAAAGVIIFLGLMVPHVARWIVGPDLPRVLITSLLLGPLVLVVADIVGRLIVPGEFPAGVVVSFIGAPFLIAYAQSRKGDM
>NZ_CP017291.1|WP_014522933.1|36978_38031_+|iron-siderophore-ABC-transporter-substrate-binding-protein
MKDTQSLNTWSHRIAVMLALFLSISLIFSLAACSSEEKQSKDAGQGNADVATGGAHFSTADAETAKLGSDAAPGEFPRTVKHALGETEIKEQPKRVVVLDTGELDSVLSLGITPVGMVTTKGSNPVPSYLADKVKDVKSVGTINEINVEEIAALQPDLILGSKLRADKIYAQLAEVAPTVFSIRPGFPWKENFLLIGDALGKEKEAEAKLNEYTEKVETIKASVPADTTVSLLRFMPKRIRLYGNKSLLGVILKDAGLARPENQNIDELATEISPETIDQAEGSVIFYSSYGKPDATGQDAIVNGAAWKNLNAVKNGQAHEVNDDVWFLGLGPTGAMQIVEELKELLPKK

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Crispr_ID: NZ_CP017291_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017291_3

642421-642506

Orphan

Consensus_repeat	Method
TGTTGAGAACTCAATAGTGTGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017291_3

>merge|NZ_CP017291|3|642421-642506|CRISPRCasFinder
TGTTGAGAACTCAATAGTGTGCCATCTGGATTTGTGGTTGGTGTGTGGGGTGTGGGTGTGTTGTTTGAGAACTCAATAGTGTGCCA

>NZ_CP017291|3|3|642421-642506|CRISPRCasFinder
TGTTGAGAACTCAATAGTGTGCCA	TCTGGATTTGTGGTTGGTGTGTGGGGTGTGGGTGTGTT
GTTTGAGAACTCAATAGTGTGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017291.1\|WP_013241451.1\|654696_655320_-\|DUF3235-domain-containing-protein	unknown	unknown	gnl\|CDD\|369056
NZ_CP017291.1\|WP_014366678.1\|656604_657132_-\|DUF2771-domain-containing-protein	unknown	unknown	gnl\|CDD\|378520
NZ_CP017291.1\|WP_143334247.1\|634956_635202_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP017291.1\|WP_050859055.1\|657160_658102_-\|glutaminyl-peptide-cyclotransferase	unknown	unknown	gnl\|CDD\|368283
NZ_CP017291.1\|WP_014732920.1\|635851_636229_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_075142671.1\|648316_649486_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|236095
NZ_CP017291.1\|WP_143334246.1\|635089_635500_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379665
NZ_CP017291.1\|WP_013241445.1\|641375_642131_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226963
NZ_CP017291.1\|WP_013241443.1\|639362_640328_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226965
NZ_CP017291.1\|WP_014523841.1\|651957_654456_-\|helicase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|379300
NZ_CP017291.1\|WP_014366671.1\|640320_641379_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|226964
NZ_CP017291.1\|WP_014366673.1\|649485_650127_-\|DUF3239-domain-containing-protein	unknown	unknown	gnl\|CDD\|378679
NZ_CP017291.1\|WP_014366674.1\|650193_651843_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_CP017291.1\|WP_014366672.1\|642545_642944_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_014523133.1\|638253_639246_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226966
NZ_CP017291.1\|WP_014366667.1\|636923_637646_+\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|238449
NZ_CP017291.1\|WP_014366663.1\|633509_634001_+\|SsrA-binding-protein-SmpB	unknown	unknown	gnl\|CDD\|376590
NZ_CP017291.1\|WP_013241453.1\|656143_656536_+\|cold-shock-domain-containing-protein	unknown	unknown	gnl\|CDD\|239905
NZ_CP017291.1\|WP_013241456.1\|658158_658893_+\|DUF3027-domain-containing-protein	unknown	unknown	gnl\|CDD\|378605
NZ_CP017291.1\|WP_143334245.1\|634567_634960_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271189

Protein	Function_ID	Function_description	E-value
NZ_CP017291.1\|WP_013241451.1\|654696_655320_-\|DUF3235-domain-containing-protein	gnl\|CDD\|369056	pfam06737, Transglycosylas, Transglycosylase-like domain. This family of proteins are very likely to act as transglycosylase enzymes related to pfam00062 and pfam01464. These other families are weakly matched by this family, and include the known active site residues.	2.00787e-36
NZ_CP017291.1\|WP_014366678.1\|656604_657132_-\|DUF2771-domain-containing-protein	gnl\|CDD\|378520	pfam10969, DUF2771, Protein of unknown function (DUF2771). This bacterial family of proteins has no known function.	2.57524e-57
NZ_CP017291.1\|WP_143334247.1\|634956_635202_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.4731e-09
NZ_CP017291.1\|WP_050859055.1\|657160_658102_-\|glutaminyl-peptide-cyclotransferase	gnl\|CDD\|368283	pfam05096, Glu_cyclase_2, Glutamine cyclotransferase. This family of enzymes EC:2.3.2.5 catalyze the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.	2.3294e-92
NZ_CP017291.1\|WP_075142671.1\|648316_649486_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|236095	PRK07777, PRK07777, putative succinyldiaminopimelate transaminase DapC.	0
NZ_CP017291.1\|WP_143334246.1\|635089_635500_-\|hypothetical-protein	gnl\|CDD\|379665	pfam14659, Phage_int_SAM_3, Phage integrase, N-terminal SAM-like domain. This domain is found in a variety of phage integrase proteins.	0.00882657
NZ_CP017291.1\|WP_013241445.1\|641375_642131_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226963	COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism].	8.96672e-143
NZ_CP017291.1\|WP_013241443.1\|639362_640328_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.41949e-121
NZ_CP017291.1\|WP_014523841.1\|651957_654456_-\|helicase-associated-domain-containing-protein	gnl\|CDD\|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	3.27804e-38
NZ_CP017291.1\|WP_014366671.1\|640320_641379_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|226964	COG4605, CeuC, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	5.89426e-97
NZ_CP017291.1\|WP_014366673.1\|649485_650127_-\|DUF3239-domain-containing-protein	gnl\|CDD\|378679	pfam11580, DUF3239, Protein of unknown function (DUF3239). This bacterial family of proteins may be membrane proteins however this cannot be confirmed. Currently there is no known function.	8.34503e-68
NZ_CP017291.1\|WP_014366674.1\|650193_651843_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	9.33804e-112
NZ_CP017291.1\|WP_014523133.1\|638253_639246_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|226966	COG4607, CeuA, ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism].	1.46972e-73
NZ_CP017291.1\|WP_014366667.1\|636923_637646_+\|carbonic-anhydrase	gnl\|CDD\|238449	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.22601e-66
NZ_CP017291.1\|WP_014366663.1\|633509_634001_+\|SsrA-binding-protein-SmpB	gnl\|CDD\|376590	pfam01668, SmpB, SmpB protein.	2.00143e-80
NZ_CP017291.1\|WP_013241453.1\|656143_656536_+\|cold-shock-domain-containing-protein	gnl\|CDD\|239905	cd04458, CSP_CDS, Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.	5.32747e-15
NZ_CP017291.1\|WP_013241456.1\|658158_658893_+\|DUF3027-domain-containing-protein	gnl\|CDD\|378605	pfam11228, DUF3027, Protein of unknown function (DUF3027). This family of proteins with unknown function appears to be restricted to Actinobacteria.	1.60956e-94
NZ_CP017291.1\|WP_143334245.1\|634567_634960_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.18128e-17

>NZ_CP017291.1|WP_013241445.1|641375_642131_+|ATP-binding-cassette-domain-containing-protein
MIRLEQVAKNYNSEVSIGPVELEIPQGGITAFIGPNGAGKSTLLTMIGRLLPIDAGQISVAGYDVAATKSQDLAKIISILRQENHFITRLSVRQLVGFGRFPYSKGKLTKQDEEIVSRYIDFLNLRPLENRYLDQLSGGQRQRAYVAMVLAQETDYVLLDEPLNNLDIAHSVEMMRHLRDIARDLGRTVIVVLHDINFAARYADYICAVKDGSVVHFGPVASAMDSEVLTRIFNTPVRVIDGPDGPLACYH
>NZ_CP017291.1|WP_014366671.1|640320_641379_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MARKLVQEKTGADVQDLATTRRSGAFQTRREQRRYWIILSIVVFAGLSCAFGLLVYKNPMPFGTQRFWLIAERRTNAIIAMAVVAFCQSLATVAFQTVTNNRIITPSIMGFESLYRVIHTSTVFFFGSVGLMQSRTIPMFLLQLALMIGLSMMLYAWLLTGKNSNMHALLLIGIIIGAGLGSLATFMQRLLTPSEFDVLTARLFGSISNADPVYFPIAIPLVLVAGGILLMLARHLNLLQLGREVVINAGVNYKVLSVLILALVSVLMATSTALVGPMTFLGFLVATLAYQCANTFDHRYVFPMAWALGFVILTSAYFVMNHIFYAQGVVSIIIELVGGIIFLIVILKKGRL
>NZ_CP017291.1|WP_013241443.1|639362_640328_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MKTHTTLAQRFNIRLLLAACAVVCLLIVSLLTGEYDIFSGGEVDIFGITRIPRTVALVLAGAAMAMSGLVMQMITQNRFVEPTTTGTTEWAGLGLLFCMLTFPQASILDRMLSAVVFSFAGTMVFFLFLRRVSLRSSLVVPIIGIMLGAVVSSVSTFVALKTDTLQTLGVWFQGSFTSVSKGQYEVLWAVALVVVAVFFYADRLTATGLGEDIATNIGVNYNRMVLIGTALIALATGVVTVVIGNLPFLGLIVPNLVSIFRGDDLRGNLPWVCLSGIGLVTICDLISRTIISPFEVPVSVVLGMFGAFVFVGLIVRQVRRG
>NZ_CP017291.1|WP_014523133.1|638253_639246_+|ABC-transporter-substrate-binding-protein
MVSRFTKFAAVFTAAGLALSACSDSGTKDSPASVQSKENTVTVQDNYGKVEIKTPVERVVATDNRTFQVLDQWGVTPVAVPKPIAPSTVPNFLNNDQIVDLGTHREPNLEAMVATDPDLIISGQRFSQHYKEMKKLNPGVPIVDFEPRDGEPFDAELKRQVTEMGVIFNKEGEAKKLVKDFEDSVARAKKAYNGSDKVMAVNVSGGSIGYIAPHVGRVYGSVFDLLGLKPALQIEGASSNHKGDDISVEAIADSNPDWIFVLDRDGAIMANDASYTPAKDVIAKNQALAGITAVKNQKVLVAPQDTYRNESIITYTKIFNSIADAFEQGK
>NZ_CP017291.1|WP_014366667.1|636923_637646_+|carbonic-anhydrase
MSTRKSYSRRQILRALGFGAGATALAACTTGPTKASQGTGDPIADGINKFEDSIYPDNKKLYEDMADSQSPHTLVVTCSDSRIDAETLLSAKPGELFHLRNIANIVPHASKPDFGMLAPVEYAVASLEVSTIAVIGHSNCGGMAALQHLDDYAKKLPATHDWLTRSKDVLARLEGERKAEDFSLRLERANAAAQLENLMSHPFVSDRVNAGALKLEAYHYDIGKGDVTKFDQKKGIFVDA
>NZ_CP017291.1|WP_014732920.1|635851_636229_-|hypothetical-protein
MTTINITATRNNGWWTATSNDIPGFVTQARRLDQIEDYARDIAQLSEKFTDDELETLEYHIKTDTYSQTAHQALEASQQAKQAQEKASQLMRKTARELAEQDLPYRDIGYLLGISHQRAQVLATS
>NZ_CP017291.1|WP_143334246.1|635089_635500_-|hypothetical-protein
MAELADIWWAGRQHLKASTLDRDAYTRARVVEKWGTWQIGAIRPSHIQAWVSGMGKSGGTVRTTHNFLSQILDVAVADGLILSNPAHGVKLPKKKRPRKNFPHTPTTRHARHNSRGKEQRAQNHRVDFRHRRATVG
>NZ_CP017291.1|WP_143334247.1|634956_635202_-|tyrosine-type-recombinase/integrase
MFLTPQQLATLATTAGEKNKERKTIVWILGTVGLRWGELAGLKVGDIDFDRARITVQRSVTYVKKSGWNPPRKHMNAAKFP
>NZ_CP017291.1|WP_143334245.1|634567_634960_-|tyrosine-type-recombinase/integrase
MTLPVSRMLHEQCRGKTPDAWVFTRPNGEPLRLVNPGTGWFRAAIKEIQEKDPNFPQITPHGLRHVAAGLLVSAGANVKVVQKQLGHASAAMTLDTYAALFDDDLDSVGERLGGLLAGVVGLSWDCEEQA
>NZ_CP017291.1|WP_014366663.1|633509_634001_+|SsrA-binding-protein-SmpB
MAKKKKAANNNPVIATNRKARHDYKILESYECGIVLLGTEIKSLREDKASLVDAFATIDEGEVWLRNLNIPIYSMGSWTNHSPKRTRKLLMHRREIDSLMGKVRDGNKTLVPLSLYFSGGRLKVELGLAQGKQDYDKRQDIKRRTEEREVVRELGRRVKGIHA
>NZ_CP017291.1|WP_014366672.1|642545_642944_-|hypothetical-protein
MKSPTKTGKKTNNQQKTSLIIQQKTMKKSTTKTVTIDALTRQHNNHPTPTPQHPKHNTQSITAQASHVSTATNTHTTQHHERISTITTPHVNNISFTNSTIFYKQATLAGRYCTIVIITQPCNKTYCCHYTT
>NZ_CP017291.1|WP_075142671.1|648316_649486_-|pyridoxal-phosphate-dependent-aminotransferase
MRHTPGVQRLDQFGQTIFATMSAKAAEFQAINLGQGFPESNGPLAMLQRAQQEIAKGNNQYAPARGIPSLRQAIARARERNFGVSYDPDTEVLVTVGATEAISATILGLVEPGEDVLVFEPYYDSYAASIALAGAQRIAVPLIPDGRSWTLYLDAFAAAITPRTSMVIINSPHNPTGAVFDEQTLKAFAAICAERDLLVLSDEVYEHYTFANHPHVPIASLPAMRERTITVSSAAKTFNVTGWKTGWALAPAPLLEAVFKAKQFMSYVGATPFQPAIAYALEHEEAWIRKTVADTEAKGICLSDGLRQAGFDVYDTHGAFYVVADISSVTDKTGNQFCLDLPREKGVAAIPIEPFTDSSPEWNSMIRFAYCRDQEEILTAIERLIASTR
>NZ_CP017291.1|WP_014366673.1|649485_650127_-|DUF3239-domain-containing-protein
MQKFSFPINADYAKKNNELLKDTKRLQLSAGLFGLIQVLIGVALFLVLGGIFGGIVFTLFIVMALISFAMIAIIPKKVGTAESLYQNYPLAAGMIAEVNPRDFVVMALVNANVDEQAPPAWALATRSITNLEGVERAVGVRIPVVAVAGQRSVHSQDTWDQISPMPIGWATTDPAVVERAIKEIPDEQWKILEKSLTRLEDVKETKFDLLVID
>NZ_CP017291.1|WP_014366674.1|650193_651843_-|DEAD/DEAH-box-helicase
MAFGDGPLIVQSDKTVLLEIDHPQADTARAALAPFAELERAPEHIHTYRITPLALWNARAAGHDAEGVVDVLETFSRFPVPQALLIDVAETMSRYGRVRLHKHPAHGLILESAEPAILAELIRHKKIRPMLGAQIDEETIVVHPSERGRLKQELLKVGWPAEDLAGYVDGEAHPIALSQEHEHWELRDYQRMAADSFWEGGSGVVVLPCGAGKTMVGAASMARAQATTLILVTNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKEIRPVTIATYQVVTRKTKGEYRALELFDSRDWGLIIYDEVHLLPAPVFRMTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDLEQRGFIATAECTEVRTTMTHEERMLYATAENQDRYRIAACAESKLRAVDTLLHRHQGLPTLIIGAYIDQLEELGARFDAPVIEGETSNKKREELFNKFRAGHITTLVVSKVANFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKADGSEAHFYSVVSRDSLDSEYAAHRQRFLAEQGYAYRIVDAADLG
>NZ_CP017291.1|WP_014523841.1|651957_654456_-|helicase-associated-domain-containing-protein
MSPHGLLAPATLATSSVTACPPPGTCAGQPGSTYPFFSMFAMCPIVSNFKGKSHLKEQLNWNTIMCSSPAPYKWPINFREWLSSLNEENLTVILKNRPDVTHPIPPGISSLAARLQLRASLARALMSLNAFELLTLEAASFLGAELEPVIAPNLVDALRQYLGAQVPDNLDVLVEEAVSELLSRALLYGSTVSFKVVPEAMNALPTGWQLFGVRAQEETDFQHALASVDERDRKVLNTLDQSGGTGITKDAAPDADPQRPIPRMIAQGLLIRIDDTTVRLPMPVRYLLRGQQPPLIPVLPDPRVEFSASNKNDENSAGTGLEIVRLMRILLRDLGHDPMPLLKDGVLGVRSVTALTRILDSNELTALRVLSLALSCNLVARGVPDPLPSDDTGGDYLCPTHHADTWLVSPLSHQWSQLIYGWYFHGTLRPWVVNTLDDKGKPQRFLSPATWNEKLPTLRKLTLSTAAQHCTSSGISDHSLRANIGFAAPLRVSRVSPEHIDQLIAEARWLGVLTANNGTTSVLDALVKETEATALSRLDQITQSLTPAEVTQLIPQADMTILAPGPLPQLLMQEMTLVGEAESMGLASVYRITESSIRRALDAGRTPEELTGFLKAHVLGELPQSIAYLIADVARRHGSLRGGPAMSYLRCSDEALLLEASRTPAAEIIGLRLIAPTVAVSQAPLVRVLQALREEGFHPLAEDANGISIDIRPAPSRVSATLPQRHPDEDNESHIAAAVASILRHDAAKEAAATGTKAAVHGSGVLSALQSAIRAKRTVTLGFVDKHGQAAQRVITPIAVSSGQLSAVDPIDGAMHRFTIHRITEVVINQPE
>NZ_CP017291.1|WP_013241451.1|654696_655320_-|DUF3235-domain-containing-protein
MARHARKSASALAKIAASTVAVGSAATLFAPAASAAPDSDWDRLAGCESGGNWAINTGNGYYGGIQFSASTWKGFGGGQYAPTADKATREQQIAVAEKVLASQGWGAWPSCSAKLGLNSAPTPRDSVASAPAPLQQIVDDAQNYAAASGQNADKLAVDAVYKAVKDRLAGYGIGVHPEIDAFYQANNNNFDAFYQANRQVIDTAMGM
>NZ_CP017291.1|WP_013241453.1|656143_656536_+|cold-shock-domain-containing-protein
MPIGRVRWYDPEKGYGFVSNPGDEDCYVGKNVLPAGVDKLEKGQRIEFDFAAVGKKPQALRIKILETPKTRRPQHRHKHSPEELHGMVSDLVTILELKVQPSLRSGRFPERKDGRQIAGILRAVAKELDS
>NZ_CP017291.1|WP_014366678.1|656604_657132_-|DUF2771-domain-containing-protein
MASRKTRRRNLIQIAALIAAVAVVVAGSIAFQTWWNKRPEKEPRDIAIEVSSPTASQEVFPFSICEPGVECPENSVPVITMSADQELTVKVPPQVSDHDWSLLKIYDDPAANDQSFYAAHDANEIKVSGSASLKKDAQSPAKLVVVEVSSVLIGHDDKGDETPYTVTWSVHVTIT
>NZ_CP017291.1|WP_050859055.1|657160_658102_-|glutaminyl-peptide-cyclotransferase
MRLHRFTRAMSSFSPLLAQIRRPHTLHKNRTSIKVFSVGFLSITFGITACASPPKPSQQSEELLERPVELQAEIISRHDFDAQSFTQGLEVDGEGLVVGTGGYGTSSIYRTSVDNIQATRTQLPESFFGEGITVTKGSSRKIWQLTWKNSVAIQRDPDSLEEITRVTYQGEGWGLCAFSDRLIMSDGTSDLRVLNPVTFQEIKRIPVRMINSQGRSVPVEGINELECVPSGPGAQTDTVYANRFLSTDILGIDAASGSVKKLIDASRIPNNAQPDIDNVLNGIAHIPGTDNFYITGKRWPDLYRVRFVHHVSP
>NZ_CP017291.1|WP_013241456.1|658158_658893_+|DUF3027-domain-containing-protein
MPNRRNTKNSQSGPLLSAKALSIARHALEELGEGEVGAHIGVRNVNETSATHRFVADLPGYNGWEWNVVLACASGSRWVTVSELALLPGQEALRAPDWVPYHQRVQPGDLGPNDFMPPRPDDPRLTDDSDQAAYDFGTLKKLTKVGIQTASERWKDGAFGPSSEYARKAVHNCGGCAFYFPLAEPVGKDFGVCVNEYSADGRVVHTTYGCGAHTDTPPAEPLGVVENSPFDDEKPEIFPSGANQ

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Crispr_ID: NZ_CP017291_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017291_4

1843040-1843129

Orphan

I-C,I-E,II-B

Consensus_repeat	Method
CCTTTTCTCCGCGCACGCGGAGGTAGTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017291_4

>merge|NZ_CP017291|4|1843040-1843129|CRISPRCasFinder
CCTTTTCTCCGCGCACGCGGAGGTAGTTCCGGCGGCCCTTATGGTGGGCATACGTCGGGCACCTTTTCTCCGCGCACGCGGAGGTAGTTC

>NZ_CP017291|4|4|1843040-1843129|CRISPRCasFinder
CCTTTTCTCCGCGCACGCGGAGGTAGTTC	CGGCGGCCCTTATGGTGGGCATACGTCGGGCA
CCTTTTCTCCGCGCACGCGGAGGTAGTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017291.1\|WP_155760776.1\|1848109_1848283_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_014367514.1\|1832297_1832921_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
NZ_CP017291.1\|WP_048480964.1\|1849256_1849493_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309782
NZ_CP017291.1\|WP_155719860.1\|1847326_1847620_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_014523555.1\|1833690_1834458_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293802
NZ_CP017291.1\|WP_014367516.1\|1834530_1835424_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
NZ_CP017291.1\|WP_014523560.1\|1849642_1849867_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_075142788.1\|1841462_1842746_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP017291.1\|WP_075142937.1\|1832917_1833652_-\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
NZ_CP017291.1\|WP_013242517.1\|1837034_1837415_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP017291.1\|WP_014367517.1\|1835497_1836316_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|366759
NZ_CP017291.1\|WP_014367518.1\|1837539_1838898_+\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236426
NZ_CP017291.1\|WP_013242516.1\|1836403_1836940_-\|DUF2017-domain-containing-protein	unknown	unknown	gnl\|CDD\|378185
NZ_CP017291.1\|WP_014523561.1\|1850007_1850838_+\|EndoU-domain-containing-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_081375013.1\|1848921_1849239_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|309782
NZ_CP017291.1\|WP_032802524.1\|1844178_1844424_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_155719859.1\|1847055_1847199_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017291.1\|WP_014367520.1\|1840968_1841466_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP017291.1\|WP_048480963.1\|1846774_1847038_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|349760
NZ_CP017291.1\|WP_032802523.1\|1843635_1843827_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017291.1\|WP_014367514.1\|1832297_1832921_-\|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	6.47655e-104
NZ_CP017291.1\|WP_014523555.1\|1833690_1834458_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293802	cd07716, RNaseZ_short-form-like_MBL-fold, uncharacterized bacterial subgroup of Ribonuclease Z, short form; MBL-fold metallo-hydrolase domain. The tRNA maturase RNase Z (also known as tRNase Z or 3' tRNase) catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors. Two forms of RNase Z exist in eukaryotes, one long (ELAC2) and one short form (ELAC1), the former may have resulted from a duplication of the shorter enzyme. Only the short form exists in bacteria. Members of this bacterial subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.30037e-75
NZ_CP017291.1\|WP_014367516.1\|1834530_1835424_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.87386e-132
NZ_CP017291.1\|WP_075142788.1\|1841462_1842746_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.26461e-91
NZ_CP017291.1\|WP_075142937.1\|1832917_1833652_-\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	2.01605e-163
NZ_CP017291.1\|WP_013242517.1\|1837034_1837415_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	1.33955e-35
NZ_CP017291.1\|WP_014367517.1\|1835497_1836316_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|366759	pfam01694, Rhomboid, Rhomboid family. This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite.	3.12334e-23
NZ_CP017291.1\|WP_014367518.1\|1837539_1838898_+\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|236426	PRK09243, PRK09243, nicotinate phosphoribosyltransferase; Validated.	0
NZ_CP017291.1\|WP_013242516.1\|1836403_1836940_-\|DUF2017-domain-containing-protein	gnl\|CDD\|378185	pfam09438, DUF2017, Domain of unknown function (DUF2017). This is an alpha-helical domain found in gene neighborhoods that contain genes encoding ubiquitin, cysteine synthases and JAB peptidases.	1.38837e-72
NZ_CP017291.1\|WP_081375013.1\|1848921_1849239_-\|hypothetical-protein	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	2.59408e-10
NZ_CP017291.1\|WP_014367520.1\|1840968_1841466_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	1.40055e-23
NZ_CP017291.1\|WP_048480963.1\|1846774_1847038_-\|AAA-family-ATPase	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	9.60016e-11
NZ_CP017291.1\|WP_048480964.1\|1849256_1849493_-\|hypothetical-protein	gnl\|CDD\|309782	pfam04796, RepA_C, Plasmid encoded RepA protein. Family of plasmid encoded proteins involved in plasmid replication. The role of RepA in the replication process is not clearly understood.	2.16083e-15

>NZ_CP017291.1|WP_075142788.1|1841462_1842746_-|phosphoserine-phosphatase-SerB
MIELDQPQVTVSLRPELTPAVITISGQDRQGVSAAAFRVLAANGVQILDVEQSQFRGFLGLAVFAGVEASKVEILEVGLKETLKTYGQNVKIELQEVAQSSRPRSTHEVVILGNPVEAHDLSRVAQTLANFDANIDTIRGISDYPVTGLELKITVAKREPGAAMPLRKAWLKLTAELGVDIAIERAGLLRRSKRLICFDCDSTLITGEVIEMLAAHAGRKRSGRKVTERAMRGELDFEESLRERVKALAGLDASVIGEVADSIELTPGGRTTIRTLKRLGYKTAVVSGGFIQVLEELAEDLGLDYVRANTLEVVDGKLTGRVIGRIVDRAAKAEFLEEFARESGIEMHQTVAVGDGANDIDMISAAGLGIAFNAKPALREIADTSVNSPFLDEVLHMLGITRADIDAADDSEGKIHRVPLPQQKNEY
>NZ_CP017291.1|WP_014367520.1|1840968_1841466_+|GNAT-family-N-acetyltransferase
MTAHVPTLSNDSVKLRPLLLSDAHDLTATCRDPLTQKYTTVPANYTFAMAEEFIKTEHDNLRWVITVPTSDRFCGQIELRSLATEHNAMNVGYMTAPWARGQGLMTSALLLAVDYAFSRSVRRIELQADSQNKASQRVAEKAGFILMDSSQDTMVYSLLADEYHS
>NZ_CP017291.1|WP_014367518.1|1837539_1838898_+|nicotinate-phosphoribosyltransferase
MSCASALSVFKAKLVCVTEFESTALLTDMYELTMLQSALADGTASRSCTFEVFSRRLPNERRYGVVAGTARVLEAIKHYRFTEEQLASLTFLDATTIDFLRSYKFQGQIDGYREGELYFPSSPILTIRGTFAECVILETLILSIMNADSAVASAAARMVTAADGRPIFEMGSRRTHEYAAVTAARAAYLAGFVGTSNLEAVHRYGIPGSGTAAHAWTLLHVNDDGTPNESAAFQSQINVLGVGTTLLVDTYDIAKGVKTAMEVAGPQLGAVRIDSGDLGVMTRKVRQELDSLGAHNTGIVVSSDLDEYAIAGLRGNPVDAFGVGTSVVTGSGAPTAGMVYKLVEVDGHPVAKRSRGKAMVGGTKRAIRTHRATGTAVEEIVFPYDHDTPQIGQLNSYELTIPLMRNGVAVDNLPTLEESRAYLAEQLITLPWEGLALSKDEPVLSTRFIGFK
>NZ_CP017291.1|WP_013242517.1|1837034_1837415_-|ATP-dependent-Clp-protease-adapter-ClpS
MQVKQEDVTHSLNELPSVVLAPTMDVVVSSPMATPELDEALSVDVASSENLPWMCIVWDDPVNLMSYVTYVFQTILGYSKRRAIELMMQVHTEGKAVVSSGERDKVEGDVKKLHTAGLWATMQQGG
>NZ_CP017291.1|WP_013242516.1|1836403_1836940_-|DUF2017-domain-containing-protein
MQPWKKKKGLMRGVHFACVFEPMEREVLGNLASTVSEALIHRAQSAPKDELAELTGMPSGHKEAPKDPALARLLPDFEKEGDEEFEGDNSLLRCLHETDITRAKIEHLYVLGQALGPDGGVHVDITETEAHAWVAALNDIRLYVASGEVFGEDAEQDRESLVEWLAYNQESLLNAMMG
>NZ_CP017291.1|WP_014367517.1|1835497_1836316_-|rhomboid-family-intramembrane-serine-protease
MSLRYFFTRLCFIMTNRFNPYAQSDKKTYGGVSTSGGYLPHEYGTQYLPTSDYPVNRAVQRGMKRTSLRSMGRKRLADATILALGYVVVIWAVHIVNTVFFGGTLAQELGVHPLDGSSIWHIFTSPLVHGSYMHISANTLPGLIFVFLIGLSGRRPFWEVTMITAVVGGMGTWIFGGIGTTHIGASGLIYGWLAYLVVRGIFNKSFSQVVLGMVLAFMYGGLIWGVLPGDVGVSWQAHLFGAIGGLIAGATITSDDPPALKARREQQALHRA
>NZ_CP017291.1|WP_014367516.1|1834530_1835424_-|glutamate-racemase
MAYVKKDLGADSLHPEAPSVKPSVVYEGTIDASSPIGIFDSGVGGLTVARAIMEQLPQESVIYIGDTANSPYGSKPIAQVRELSMRIGDELVARGCKMIVIACNTATSAALRDLRERYSIPVVGVILPAVRRAVAATRNGKIGVLGTQGTIASGAYQELFAASPGVEVYAQACPSFVSFVERGITSGRQILGVAQGYTEGLQSAGVDTLVLGCTHYPLLTGVIQLAVGDNVTLISSSEECVKDVLKVLSRNDMLAEATADKSPSRSFESTGDPALFEQLAMRFLGPHVTYVEKLRQV
>NZ_CP017291.1|WP_014523555.1|1833690_1834458_-|MBL-fold-metallo-hydrolase
MKLTILGSSGSLGAPDNAASGYLIQMDNAPSILMDMGPGVLAQLERAQNPSDAHVVFSHLHADHCVDFPSLLVWRRYHPTAAAKGRNLCFGPTDTPVRLGRLSADSVDNIDDMSDTFAFTPWQNAKEELVGTVSITPYSVVHPIESFALRVEHKRSGKVVAYSGDSSYTENLIECARDADVFLCEATWGETSEGKVPNMHMSGEEAGRIARIAGAKRLILVHIPPWGNAKAALEKARSEFDGPVDISYQGMEIHI
>NZ_CP017291.1|WP_075142937.1|1832917_1833652_-|ribonuclease-PH
MTTSNFKRADGRAVDQMRTVKITRGFTTNPAGSVLVEFGNTRVMCTASAEIGVPRFKRDSGEGWLTAEYAMLPAATLDRNPRESMRGKVKGRTHEISRLIGRSLRAAVDLSELGENTINIDCDVLQADGGTRTASITGAYVALADAISHLQNQGVVPGNPLKDPVAAVSVGVIDGAVCLDLPYEEDSRADVDMNVIMQNGRFVEIQGTGEHNTFDRDELARILDFAEKGCTELVAAQKAALGIA
>NZ_CP017291.1|WP_014367514.1|1832297_1832921_-|RdgB/HAM1-family-non-canonical-purine-NTP-pyrophosphatase
MRILVASNNAKKLKELEVILEASGVSGAEIVPLRAVEPYPEPQEDGRSFADNALIKARAGVKNTGLVTIADDSGLMVEELNGMPGVLSARWSGSHGDDAANNNLLLKQMSDVPEERRQAAFVSVCALVTPDGTEHLVEGRWEGRLLTAPQGDNGFGYDPLFVPGEEDSAGTYRSSAELSAEEKNAISHRGKALKQLVPIISRIIQDS
>NZ_CP017291.1|WP_032802523.1|1843635_1843827_+|hypothetical-protein
MTSINRDLKKRRWDELLYPGTQVLKNLYGIRDEFLAKKVIRAAALTARKNIPSTGFGKATISE
>NZ_CP017291.1|WP_032802524.1|1844178_1844424_+|hypothetical-protein
MQFPPLSEDSVLPLRLIWDQISAPLPNEQQDQKDFHKAQEMVKDIMGGTGIDFSLESSSQISYELNQNNQVDSFDKHSPEL
>NZ_CP017291.1|WP_048480963.1|1846774_1847038_-|AAA-family-ATPase
MLGEKPKNSDLPCLFPVIPGNAHSIRRAPQSDFVLLDCPPGNAQIIDTAVAASDEVIIPVSPSGIEVDRMRDALDLTAEKPTRVLLA
>NZ_CP017291.1|WP_155719859.1|1847055_1847199_+|hypothetical-protein
MISKLEAEMSEMRGKYYEAVHYIRQLHLAYPDAVDANPVTDELEQDF
>NZ_CP017291.1|WP_155719860.1|1847326_1847620_+|hypothetical-protein
MPGLDFFCVPEGESGAEVCYVAWCASVGYVGAPCSFADVAVVGTVFDTPEFASGVFVGDGGVHWWLLLEMMAARVSRVSASIVQAAIVIVVVGRKSR
>NZ_CP017291.1|WP_155760776.1|1848109_1848283_+|hypothetical-protein
MSAHGEAHHKQYTVPLRQQVFVYFYSFEERLLINNDGVDSFHALIDAYEHAYNIAHR
>NZ_CP017291.1|WP_081375013.1|1848921_1849239_-|hypothetical-protein
MNNRRPKQDTKRHQDPPQGYEPTHRRRWKLWLDASNPDQADLEDSYIQLTKRFFDLIADTPSPIDLDILQKLGKPRAMDIYVWITMKKAALHYQTAAASPWDNQR
>NZ_CP017291.1|WP_048480964.1|1849256_1849493_-|hypothetical-protein
MITKSPNGLPYGKYPRLIMAYVITSAVVRSHQVEQGYLTAEEARKIPLGESMNEFFRRIGGTTRGTGGNTGTITRIRE
>NZ_CP017291.1|WP_014523560.1|1849642_1849867_+|hypothetical-protein
MSKIKDPKSVLRGLASALLGVIAYCAVVAPVFKEGSYWESAKENFSAIGVGFSAAIVLVGVLWLVIIHFANKSQ
>NZ_CP017291.1|WP_014523561.1|1850007_1850838_+|EndoU-domain-containing-protein
MHGGNYLRARGGEGRRALWSARRCGQSLSEAEQDKHFTKAGAETLRNGADYVEVVNSMQGMTGIGDDVKPFTTYGTPRSGWRRLSVPEIMRRADGNEDHMRELRLQHRYIRPERRYGPVSRVDFSKGWPHDSDNLGELAQELPKNDPRPVPSSKDWAHILDGEPIVPRKKIQGGHRYGTGRERKTEFPRWWSDDDIKKAVLLTIEAPHASKVFGTTRVLYRVVDEVLVQVSYYPAPDSSGSMILGASYPKNGSGVVKNIGGRAVEQPLDVSLVPRE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017291_3	3.1\|642445\|38\|NZ_CP017291\|CRISPRCasFinder	642445-642482	38	NZ_CP017291.1	642384-642421	0	1.0
NZ_CP017291_3	3.1\|642445\|38\|NZ_CP017291\|CRISPRCasFinder	642445-642482	38	NZ_CP017291.1	1059963-1060000	1	0.974

1. spacer 3.1|642445|38|NZ_CP017291|CRISPRCasFinder matches to position: 642384-642421, mismatch: 0, identity: 1.0

tctggatttgtggttggtgtgtggggtgtgggtgtgtt	CRISPR spacer
tctggatttgtggttggtgtgtggggtgtgggtgtgtt	Protospacer
**************************************

2. spacer 3.1|642445|38|NZ_CP017291|CRISPRCasFinder matches to position: 1059963-1060000, mismatch: 1, identity: 0.974

tctggatttgtggttggtgtgtggggtgtgggtgtgtt	CRISPR spacer
tctggatttgtggttggtgtgtggggtgtgtgtgtgtt	Protospacer
****************************** *******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017291_1	1.3\|22497\|31\|NZ_CP017291\|CRT	22497-22527	31	NZ_CP027853	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence	223320-223350	6	0.806
NZ_CP017291_1	1.2\|22436\|31\|NZ_CP017291\|CRT	22436-22466	31	NZ_CP019064	Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence	112232-112262	7	0.774
NZ_CP017291_1	1.8\|22496\|32\|NZ_CP017291\|PILER-CR	22496-22527	32	NZ_CP027853	Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence	223319-223350	7	0.781
NZ_CP017291_1	1.2\|22436\|31\|NZ_CP017291\|CRT	22436-22466	31	NC_048639	Pseudomonas phage ZC08, complete genome	14894-14924	8	0.742
NZ_CP017291_1	1.2\|22436\|31\|NZ_CP017291\|CRT	22436-22466	31	NC_048638	Pseudomonas phage ZC03, complete genome	14836-14866	8	0.742
NZ_CP017291_1	1.1\|22375\|31\|NZ_CP017291\|CRT	22375-22405	31	KU160495	Exiguobacterium phage vB_EauS-123, complete genome	10947-10977	9	0.71
NZ_CP017291_1	1.2\|22436\|31\|NZ_CP017291\|CRT	22436-22466	31	GQ866233	Aggregatibacter phage S1249, complete sequence	27861-27891	9	0.71
NZ_CP017291_1	1.7\|22435\|32\|NZ_CP017291\|PILER-CR	22435-22466	32	NC_048639	Pseudomonas phage ZC08, complete genome	14894-14925	9	0.719
NZ_CP017291_1	1.7\|22435\|32\|NZ_CP017291\|PILER-CR	22435-22466	32	NC_048638	Pseudomonas phage ZC03, complete genome	14836-14867	9	0.719
NZ_CP017291_1	1.7\|22435\|32\|NZ_CP017291\|PILER-CR	22435-22466	32	GQ866233	Aggregatibacter phage S1249, complete sequence	27860-27891	10	0.688

1. spacer 1.3|22497|31|NZ_CP017291|CRT matches to NZ_CP027853 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence) position: , mismatch: 6, identity: 0.806

gcctgattcactgtcagcccgtaaagctcac	CRISPR spacer
ggctgatttactggcagcccgtaaagcactg	Protospacer
* ******.**** ************* *

2. spacer 1.2|22436|31|NZ_CP017291|CRT matches to NZ_CP019064 (Rahnella sp. ERMR1:05 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.774

tggtgttccaataatgcttttgctgccaact	CRISPR spacer
ttatgttccaataatgcctttgctgaagatt	Protospacer
* .**************.*******  .*.*

3. spacer 1.8|22496|32|NZ_CP017291|PILER-CR matches to NZ_CP027853 (Plesiomonas shigelloides strain MS-17-188 plasmid pPS-MS-17-188-1, complete sequence) position: , mismatch: 7, identity: 0.781

tgcctgattcactgtcagcccgtaaagctcac	CRISPR spacer
aggctgatttactggcagcccgtaaagcactg	Protospacer
 * ******.**** ************* *

4. spacer 1.2|22436|31|NZ_CP017291|CRT matches to NC_048639 (Pseudomonas phage ZC08, complete genome) position: , mismatch: 8, identity: 0.742

tggtgttccaataatgcttttgctgccaact	CRISPR spacer
aagaactccaataatgactttgctgccaacc	Protospacer
 .* ..********** .************.

5. spacer 1.2|22436|31|NZ_CP017291|CRT matches to NC_048638 (Pseudomonas phage ZC03, complete genome) position: , mismatch: 8, identity: 0.742

tggtgttccaataatgcttttgctgccaact	CRISPR spacer
aagaactccaataatgactttgctgccaacc	Protospacer
 .* ..********** .************.

6. spacer 1.1|22375|31|NZ_CP017291|CRT matches to KU160495 (Exiguobacterium phage vB_EauS-123, complete genome) position: , mismatch: 9, identity: 0.71

cagcaacggtgagaatctttttttcgcgacg	CRISPR spacer
aagcaaccgtgagaatatttttttgaaaatc	Protospacer
 ****** ******** ******* . .*.

7. spacer 1.2|22436|31|NZ_CP017291|CRT matches to GQ866233 (Aggregatibacter phage S1249, complete sequence) position: , mismatch: 9, identity: 0.71

tggtgttccaataatgcttttgctgccaact	CRISPR spacer
cggtgtctcaataatgcttttgctaattccg	Protospacer
.*****..****************. .  *

8. spacer 1.7|22435|32|NZ_CP017291|PILER-CR matches to NC_048639 (Pseudomonas phage ZC08, complete genome) position: , mismatch: 9, identity: 0.719

ttggtgttccaataatgcttttgctgccaact	CRISPR spacer
gaagaactccaataatgactttgctgccaacc	Protospacer
  .* ..********** .************.

9. spacer 1.7|22435|32|NZ_CP017291|PILER-CR matches to NC_048638 (Pseudomonas phage ZC03, complete genome) position: , mismatch: 9, identity: 0.719

ttggtgttccaataatgcttttgctgccaact	CRISPR spacer
gaagaactccaataatgactttgctgccaacc	Protospacer
  .* ..********** .************.

10. spacer 1.7|22435|32|NZ_CP017291|PILER-CR matches to GQ866233 (Aggregatibacter phage S1249, complete sequence) position: , mismatch: 10, identity: 0.688

ttggtgttccaataatgcttttgctgccaact	CRISPR spacer
acggtgtctcaataatgcttttgctaattccg	Protospacer
 .*****..****************. .  *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1753330 : 1830744

Agrobacterium_phage(15.38%)

protease,integrase,bacteriocin,tRNA

attL 1805497:1805524|attR 1811402:1811429

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_041478401.1\|1753330_1756066_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	8.3e-140	38.9
WP_013242455.1\|1756232_1757213_-	malate dehydrogenase	NA	NA	NA	NA
WP_014367460.1\|1757815_1758574_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_014367461.1\|1758632_1759919_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.8e-132	58.4
WP_075142769.1\|1760079_1762884_-	chorismate-binding protein	A0A0B5J984	Pandoravirus	1.3e-79	33.6
WP_013242459.1\|1762960_1763590_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.4e-37	43.5
WP_013242460.1\|1763605_1764205_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.3e-42	48.3
WP_014367463.1\|1764415_1765768_-	trigger factor	NA	NA	NA	NA
WP_014300878.1\|1766556_1766799_+	hypothetical protein	A0A1W6JRB8	Corynebacterium_phage	3.9e-09	48.4
WP_075142770.1\|1766935_1767712_+	hypothetical protein	NA	NA	NA	NA
WP_014367466.1\|1767798_1768809_-	pirin family protein	NA	NA	NA	NA
WP_075142771.1\|1768895_1769399_-	ribose-5-phosphate isomerase	NA	NA	NA	NA
WP_075142772.1\|1769465_1770086_-	DsbA family protein	NA	NA	NA	NA
WP_075142773.1\|1770419_1773038_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	5.9e-42	29.7
WP_151899125.1\|1773174_1773480_+	hypothetical protein	NA	NA	NA	NA
WP_075140858.1\|1774157_1774550_+	globin	NA	NA	NA	NA
WP_075142774.1\|1774561_1775458_+	DMT family transporter	NA	NA	NA	NA
WP_013242473.1\|1775461_1776070_-	hypothetical protein	NA	NA	NA	NA
WP_013242474.1\|1776075_1776504_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_014522869.1\|1776711_1778382_-	energy-dependent translational throttle protein EttA	A0A2K9L0W2	Tupanvirus	1.3e-47	27.9
WP_014367473.1\|1778572_1779133_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_075142775.1\|1779660_1781415_+	hypothetical protein	NA	NA	NA	NA
WP_075142776.1\|1781411_1782950_+	YcaO-like family protein	NA	NA	NA	NA
WP_014367478.1\|1782976_1784455_+	nitroreductase family protein	NA	NA	NA	NA
WP_075142777.1\|1787054_1788068_+	hypothetical protein	NA	NA	NA	NA
WP_075142778.1\|1788064_1789045_+	hypothetical protein	NA	NA	NA	NA
WP_014367482.1\|1789083_1789254_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
WP_014367484.1\|1790799_1791558_-	permease	NA	NA	NA	NA
WP_014367485.1\|1791554_1792478_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.2e-19	26.1
WP_075142779.1\|1792568_1794614_-	bifunctional copper resistance protein CopD/cytochrome c oxidase assembly protein	NA	NA	NA	NA
WP_075142780.1\|1795206_1797492_+	carbon starvation protein A	NA	NA	NA	NA
WP_014367489.1\|1797511_1797712_+	YbdD/YjiX family protein	NA	NA	NA	NA
WP_075142781.1\|1800152_1801148_+	oxidoreductase	NA	NA	NA	NA
WP_014523547.1\|1801274_1802078_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_014523548.1\|1802143_1802803_+	oligoribonuclease	M4M9I5	Vibrio_phage	8.4e-22	35.0
WP_014367495.1\|1802982_1803810_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_014523549.1\|1803862_1805053_-	L,D-transpeptidase family protein	NA	NA	NA	NA
1805497:1805524	attL	NA	NA	NA	NA
WP_050494099.1\|1805671_1806349_+	hypothetical protein	A0A1X9SFC1	Mycobacterium_phage	5.1e-22	34.0
WP_075140840.1\|1806461_1806803_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_032802512.1\|1807253_1808258_-	AAA family ATPase	NA	NA	NA	NA
WP_052399380.1\|1808254_1808692_-	hypothetical protein	NA	NA	NA	NA
WP_014367498.1\|1810141_1810699_+	recombinase family protein	M9Q1K0	Clostridium_phage	4.0e-33	46.2
WP_071437099.1\|1811041_1811272_-	hypothetical protein	NA	NA	NA	NA
WP_014367502.1\|1811741_1812740_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
1811402:1811429	attR	NA	NA	NA	NA
WP_014655718.1\|1812939_1813494_+	isochorismatase family protein	A0A2K9L2K0	Tupanvirus	5.2e-17	32.6
WP_014800825.1\|1813502_1813847_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_013242498.1\|1813968_1814244_-	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_075142782.1\|1814332_1814812_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_013242500.1\|1814849_1815503_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_013242501.1\|1815515_1815905_-	holo-ACP synthase	NA	NA	NA	NA
WP_075142783.1\|1816035_1825134_-	type I polyketide synthase	NA	NA	NA	NA
WP_075142784.1\|1825358_1825664_-	hypothetical protein	NA	NA	NA	NA
WP_014367507.1\|1825824_1826940_+	two-component sensor histidine kinase	NA	NA	NA	NA
WP_014367508.1\|1826936_1827563_+	response regulator transcription factor	NA	NA	NA	NA
WP_014524035.1\|1828820_1829579_-	hypothetical protein	NA	NA	NA	NA
WP_075142785.1\|1829670_1830000_-	hypothetical protein	NA	NA	NA	NA
WP_075142786.1\|1830078_1830744_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017291

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection