CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP018811	Paraburkholderia sp. SOS3 chromosome 1, complete sequence	1 crisprs	cas3,csa3,DinG,DEDDh	1
NZ_CP018813	Paraburkholderia sp. SOS3 plasmid unnamed1, complete sequence	0 crisprs	NA	3
NZ_CP018812	Paraburkholderia sp. SOS3 chromosome 2, complete sequence	1 crisprs	csa3,WYL,DinG,cas3,RT,DEDDh	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018811_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018811_1

1983464-1983565

Orphan

Consensus_repeat	Method
CGGCGGCGGATGTCCGCCGCCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018811_1

>merge|NZ_CP018811|1|1983464-1983565|CRISPRCasFinder
CTGCGGCGGCGGATGTCCGCCGCCGCCTCCCGCAGCAGGACCGCCGCCTCCGCCCGCATGTGGCGGCGGTGGGTTATTCGGCGGCGGACGTCCGCCGCCGCC

>NZ_CP018811|1|1|1983464-1983565|CRISPRCasFinder
CTGCGGCGGCGGATGTCCGCCGCC	GCCTCCCGCAGCAGGACCGCCGCCTCCGCCCGCATGTGGCGGCGGTGGGTTATT
CGGCGGCGGACGTCCGCCGCCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018811.1\|WP_075156759.1\|1987035_1987464_+\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
NZ_CP018811.1\|WP_075156760.1\|1987581_1987905_+\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|213674
NZ_CP018811.1\|WP_075156755.1\|1984132_1984369_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018811.1\|WP_075156762.1\|1988660_1990532_+\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360
NZ_CP018811.1\|WP_075156744.1\|1966977_1967622_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226932
NZ_CP018811.1\|WP_075156753.1\|1981941_1983354_+\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|224062
NZ_CP018811.1\|WP_075156764.1\|1991023_1991221_+\|Fe-S-cluster-assembly-protein-IscX	unknown	unknown	gnl\|CDD\|377339
NZ_CP018811.1\|WP_075156750.1\|1978756_1979947_+\|D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|236952
NZ_CP018811.1\|WP_075156756.1\|1984391_1984877_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
NZ_CP018811.1\|WP_075156751.1\|1980136_1980943_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP018811.1\|WP_075156745.1\|1967618_1970135_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226654
NZ_CP018811.1\|WP_075156758.1\|1985703_1986927_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
NZ_CP018811.1\|WP_075156761.1\|1987972_1988500_+\|Fe-S-protein-assembly-co-chaperone-HscB	unknown	unknown	gnl\|CDD\|235133
NZ_CP018811.1\|WP_075156747.1\|1973205_1974897_+\|dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|237000
NZ_CP018811.1\|WP_075156748.1\|1975092_1976913_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP018811.1\|WP_075156752.1\|1981122_1981845_+\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
NZ_CP018811.1\|WP_075156749.1\|1977371_1977959_-\|phasin-family-protein	unknown	unknown	gnl\|CDD\|130900
NZ_CP018811.1\|WP_075156757.1\|1985067_1985601_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927
NZ_CP018811.1\|WP_075156746.1\|1970411_1973123_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP018811.1\|WP_075156763.1\|1990666_1991008_+\|ISC-system-2Fe-2S-type-ferredoxin	unknown	unknown	gnl\|CDD\|131062

Protein	Function_ID	Function_description	E-value
NZ_CP018811.1\|WP_075156759.1\|1987035_1987464_+\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	1.57925e-97
NZ_CP018811.1\|WP_075156760.1\|1987581_1987905_+\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.92526e-57
NZ_CP018811.1\|WP_075156757.1\|1985067_1985601_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	1.95885e-82
NZ_CP018811.1\|WP_075156762.1\|1988660_1990532_+\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0
NZ_CP018811.1\|WP_075156744.1\|1966977_1967622_-\|response-regulator-transcription-factor	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	2.22841e-90
NZ_CP018811.1\|WP_075156753.1\|1981941_1983354_+\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	0
NZ_CP018811.1\|WP_075156764.1\|1991023_1991221_+\|Fe-S-cluster-assembly-protein-IscX	gnl\|CDD\|377339	pfam04384, Fe-S_assembly, Iron-sulphur cluster assembly. This family of proteins is likely to be involved in the assembly of iron-sulphur clusters. It may function as an adaptor protein. In Escherichia coli IscX forms part of the isc operon, which encodes genes involved in iron-sulphur cluster assembly. Its structure is entirely alpha helical, and it contains a modified wing-helix structure, usually found in DNA-binding proteins. It binds to Fe2+ and Fe3+ ions and to the cysteine desulfurase IscS, the same surface of the protein is involved in both binding to iron and to IscS.	6.08387e-37
NZ_CP018811.1\|WP_075156750.1\|1978756_1979947_+\|D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|236952	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional.	6.82703e-100
NZ_CP018811.1\|WP_075156763.1\|1990666_1991008_+\|ISC-system-2Fe-2S-type-ferredoxin	gnl\|CDD\|131062	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	8.39774e-58
NZ_CP018811.1\|WP_075156751.1\|1980136_1980943_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	7.22791e-71
NZ_CP018811.1\|WP_075156745.1\|1967618_1970135_-\|PAS-domain-S-box-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	2.15268e-45
NZ_CP018811.1\|WP_075156758.1\|1985703_1986927_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
NZ_CP018811.1\|WP_075156761.1\|1987972_1988500_+\|Fe-S-protein-assembly-co-chaperone-HscB	gnl\|CDD\|235133	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB.	3.72692e-93
NZ_CP018811.1\|WP_075156747.1\|1973205_1974897_+\|dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0
NZ_CP018811.1\|WP_075156749.1\|1977371_1977959_-\|phasin-family-protein	gnl\|CDD\|130900	TIGR01841, hypothetical_protein, phasin family protein. This model describes a family of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins; the member from Rhodospirillum rubrum is an activator of polyhydroxybutyrate (PHB) degradation. However, the member from Magnetospirillum sp. AMB-1 is called a magnetic particle membrane-specific GTPase.	5.1301e-15
NZ_CP018811.1\|WP_075156748.1\|1975092_1976913_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP018811.1\|WP_075156752.1\|1981122_1981845_+\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	3.36707e-55
NZ_CP018811.1\|WP_075156756.1\|1984391_1984877_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	8.27712e-77
NZ_CP018811.1\|WP_075156746.1\|1970411_1973123_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0

>NZ_CP018811.1|WP_075156753.1|1981941_1983354_+|iron-sulfur-cluster-binding-protein
MQVQSMHFKARAGQKLADQRLQQNLTKLSTRIVAARAQVMTEIDFQATRTSLKERRNRALDNLDVWLDTFEREATRRGVTVLYAETTQDAAKLVADIARKHDVKKVIKSKSMVSEEMRLNEVLGKMGVQSVETDLGEYILQINNNEPPSHIIMPVIHKDKEEIADLFAKTHNKPRLTEIPQMTREARETLRPHFMSADMGVTGANFVIAETGSIAVVTNEGNEGMCTVMPRVHVAVTGIEKVLPTLEDLATALRLLPRSATAQSMTNYVSLLTGPRRPGDQDGPEHMYVVLVDGGRTGLIGGDFQEMLRCIRCGACMNHCPVYQKVGGHAYGWVYPGPMGSVLTPSYVGIDKALDLPQAATLCGECNSVCPVGIPLSDLLRKLRERQVERHLRPWRERFGLALWGYFALHPAAYALLTKLAVRVLEKVGGEQRSIGRLPFGGGWTNTRDMPAPVGRTFRELYAAQRSHRG
>NZ_CP018811.1|WP_075156752.1|1981122_1981845_+|(Fe-S)-binding-protein
MRVGFFVTCLIDLMRPEIGFSAIKLIERAGFEVVVPPAQTCCGQPAYNSGERGIARDLAEKMLREFEQFDYVVVPSGSCGGMIRAHYGDLFGNDPELMGRFARLRAKVYELTDFLVTVAKVELGPGEFTGPVTYHDSCAGLRELGVKAQPRALLAQAGVQVAEMKGCEHCCGFGGTFAVKYGDISTAIVDEKCDNIHASGTNAVVLGDLGCMLNIEGRLRRTGDTTTRVLHIAQVLAGDA
>NZ_CP018811.1|WP_075156751.1|1980136_1980943_-|IclR-family-transcriptional-regulator
MSDTNPDPKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGNLVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADEAARVRAYATRTGLSGHTQNSITDLAKLERELTHVRQQSCARDNEELELGVRCIAAGIYDDTGRLVAGLSLSAPADRLQDSWLNQVSKTALVISESLGYQPEAAQPDAAARSA
>NZ_CP018811.1|WP_075156750.1|1978756_1979947_+|D-alanyl-D-alanine-endopeptidase
MKTDMFSSLKVMHGAALTTALSVAASMVIAAASALPVDAFAASTTASAKSEKSAKATKKSKKPAQPAAKVSSRESAKGAKVAAAKRGGEGDAPRAVSKKKRVSYTMNGRHHSVVRRVAFEPRSPTAGQAFGLHESPEGVALRSTVAYVVDQNSSEPLFDKNSRAVVPIASITKLMTAMVVLDSKEPMTEQIEVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYYPGGRPAFMAAMNAKAKQLGMVDTHFENPTGLTSQNVSTARDLVKMVNAAYQYPLIRRFSTDRSYEVYTGKRTLAYNSTNALIRNPSWDIGLQKTGFINEAGECLVMQATIDNRPMIMVLLDSAGKYSRFADATRLRTWIDNGGEQRVTSADANGAGT
>NZ_CP018811.1|WP_075156749.1|1977371_1977959_-|phasin-family-protein
MTLLTPEQFAAAQKANLETLFGLTNKAFEGVEKLVELNLQVVKSTLAENQENAQRALSVKDAQELLALQASLTQPVAEKVLSYGRHLYEIASATQAEFARVAEAQYEEQNRKVQALVDNVAKNAPAGSETAVAVIKSAITAANTTYETVHKATKQAVEIAESNFNAAATAASKAASQAAAQVSRQASATKKAAAA
>NZ_CP018811.1|WP_075156748.1|1975092_1976913_+|dihydrolipoyl-dehydrogenase
MSLVEVKVPDIGDFKDVDVIEVNIKPGDVIEKEQALMTLESDKASIEVPSDTAGTVKEVRVKAGDKVSEGTVIATVETSGEAAPAKEEAKPAKESAKEPAKAAAPAAAAQPAAQPAAQSAPKQPAAAPQAGSFSGTADIECDMVVLGSGPGGYSAAFRAADLGMKTVLVERYATLGGVCLNVGCIPSKALLHTALVIDEAAALGAHGITFAKPQVDLDKLREFKSGVVKKLTGGLGGMAKARKVEVVTGVGAFVDPHHMEVQTEGGKKVVKFKNAIIAAGSQAVKLPFIPGDPRVIDSTGALELRQIPQRMLVIGGGIIGLEMATVYSTLGAQIDVVEMLDGLMMGADRDLVKVWEKFNSKRFANVMLKTKTTAAEAKQDGIYVTFEGEKAPAEPQRYDLVLVAVGRSPNGKKIGADKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAEAAHGEKAYFDALQIPSVAYTDPEVAWAGKTEDQCKAEGIKYGKAVFPWAASGRAIANGRDEGFTKLIFDEQTHRVIGGGIVGLNAGDLISEVCLAVEMGADATDIGKTIHPHPTLGESIGMAAELYEGVCTDLPPQRKK
>NZ_CP018811.1|WP_075156747.1|1973205_1974897_+|dihydrolipoyllysine-residue-acetyltransferase
MSQAIEVKVPDIGDYKDVPVIEVLVKAGDTVEKEQSLVTLESDKATMDVPSPVSGVVKEIKVKVGDNVSEGTLIVVVDGEGAGAAPSKAPAQAQANGAAAPAAQAAAAAAAPAAAPAAAPAAASGGGVQEVKVPDIGDYKDVPVIEIAVKVGDRVEKEQSLITLESDKATMDVPSPAAGVVKEVKVKVGDNVSEGTVIVLIEGAGGAAPAPAAAAPQKPVEAPSDAPQKPAAAPAAAQPSALAQAPVIPAGEGGAYRPSHASPSVRKFARELGVDVARVQGTGPKGRVTQDDVTAFVKGVMTGERAAPAAAAGAPAGGGELNLLPWPKIDFTKFGPIDPKPLSRIKKISGANLHRNWVMIPHVTNNDEADITELEALRVQLNKENEKAGVKFTMLAFVIKAVVAALKKFPTFNTSLDGDNLVYKQYFHIGFAADTPNGLVVPVIRDADKKGLVDIAKEMTELSKLARDGKLKPEQMQGGSFSISSLGGIGGTHFTPIINAPEVAILGLSRSFMKPVWDGKQFVPRLTLPLSLSYDHRVIDGAEAARFNAYLSSILGDFRRVIL
>NZ_CP018811.1|WP_075156746.1|1970411_1973123_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSAVPDEVLKYVAASQDDNDPQETAEWLEALDGVISAVGPNRAHYLIEKQIEFARVHGEHLPFSANTPYINTIPVANQAKIPGDQDIEHRIRSYTRWNAMAMVLRAGKDTNVGGHIASFASAATLYDVGFNHFWHAPSADHGGDLVFVQGHSSPGVYARAFLLGRLSEKQVDNFRQEVGGEGISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFMKYLQARGIAKTEGRKVWAFLGDGETDEPESLGAIGMAGRERLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKVVWGSRWDALFARDKSGALMRRMMEVVDGEYQTYKSESGAFVREHFFNTPELKALVADWSDDDIWNLNRGGHDPHKIFAAYKAATEAKNQPTVILAKTIKGYGMGEAGQAMNITHQQKKMQVEALKQFRDQFRLPIPDEEIAHIPYLTFEEGSKELEYMRARRQELGGYLPARRQKAESLPVPELSVFEPLLKGTGEGREISTTMAFVRILNILLKDKTLGKRVVPIVPDESRTFGMEGLFRQIGIWNQDGQKYVPEDSDQLMFYKESETGQILQEGINEAGGMSDWIAAATSYSTHNEIMIPFYIYYSMFGFQRIGDLAWAAGDMRSRGFLLGGTAGRTTLNGEGLQHEDGHSLLWASSIPNCISYDPTFGYELAVIIQDGLRRMVQEQEDVFYYLTVMNENYEHPAIPQGDAVASDIIKGMYAFRKADGDAASGKNAPRVQLMGAGTIFNEVIAAADLLKNDWGVAADLWSVPSFTELAREGHEVQRWNLLHPTEEKKLSHVEKLLKDAKGPVIASTDYVRALSEQIRAFVPQRYVVLGTDGFGRSDTREQLRHFFEVDRYWVTVAALNALADEGTIERKVVADALKKYNLDPSKPNPMTV
>NZ_CP018811.1|WP_075156745.1|1967618_1970135_-|PAS-domain-S-box-protein
MLTDRLFARSARPSGSPADTSPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRREQQQQEDTLYRNVAWAQQQIRLSMTGAQEQIQALARDLVTGRADPHSFQVSTADIMQGHPEILYMNWYTSESQPRWPNTPLPVLGQRLAKPNEQQMDEAVKAAFNEARTTRRQVYSPLLYDDLGNGYITLQTPVYRDREFLGSIAAVFSVEGMLKRDIPPELSAKYKISIIDVNNRELATTSTRPRLPRDAYYDLPLDPPGQGISVRVYAYPQMTNFTNNTLVWLVAGLSCFVLWSLWSLWKHTRQRFEAQQALYAEAFFRRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDEIDLVGKTAPFPYWPRDSYPEMQRQLDMTLRGKAPSSGFELRVRRKDGSLFHARLYVSPLIDSSGRQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRHLFGIRPDGHLELAGGGGFDSSQASSDSIDMVDTYAGLPAAALTESTADAQEVYVQGIQKWFEVRRQYIQWVDGHLAQMQIATDITTRKQAQELARQQDEKLQFTSRLMTMGEMASSLAHELNQPLAAINNYCSGAVALVKSGRTTPDNLLPVLEKTAQQAVRAGMIIKRIREFVKRSEPKRQATRVADIVADAVGLAELEARKRRIRIVTDIRSRLPVIYVDPVLIEQVLVNLLKNGAEAMHDARPDAVDPVIRVIARLEAGNVCISVVDQGPGVDEATAEHLFEPFYSTKSDGMGMGLNICRSIIESHRGRLWVVNNVEADGHITGATFHCSLPIGEPDGPSNGGREAPTPQTVTGEL
>NZ_CP018811.1|WP_075156744.1|1966977_1967622_-|response-regulator-transcription-factor
MNTPVTTQETVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFIEAWQPHQHPGQIACLILDVRMSGMSGLELQERLIADNTLLPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVERMLDKARSESTSVQQQRAAAERLGKLTAREHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSNKPQQAQ
>NZ_CP018811.1|WP_075156755.1|1984132_1984369_+|hypothetical-protein
MKKTISMYWPLAIVLPLAAAAFLHLCSSAVKHASTAPLAASEVTAELARTVSYGFVGDDEAASAQPMRANVTLQSQPL
>NZ_CP018811.1|WP_075156756.1|1984391_1984877_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MKTISVCFVCLGNICRSPTAEGVMRYELAEAKLSDRVTVDSAGTGNWHIGEAPDERAQLAARGRGYDLSQLRGRQIAAADFERFDLLIAMDDANVAALNRICPPAYRDKIRLLMEFAPQGDAREVADPYFGGANGFETVLDQCESACRGLVAALRVQLQVV
>NZ_CP018811.1|WP_075156757.1|1985067_1985601_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKGTCEGTKQRDGHCMTHELWSTLNQKMVEYLDSVSLKDLVDQQRAREATPATVLRDRRSEAAAVEPTRVLPKGPNSVFNMAGS
>NZ_CP018811.1|WP_075156758.1|1985703_1986927_+|IscS-subfamily-cysteine-desulfurase
MKNDIPHLPIYMDYSATTPVDPRVVDKMIPYLREQFGNPASRSHAYGWDAEHAVEEARENVAALVNADPREIIWTSGATESDNLAIKGAAHFCKGKGKHIITVKTEHKAVLDTCRELEREGYEVTYLDVKDDGLIDIEVFKAALRPDTILVSVMHVNNEIGVIQDIATIGEICREKGIIFHVDAAQATGKVEIDLQKLKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLATHQIVGMGEAFRIAREEMATENERIRMLRDRLLRGLSQIEEVYVNGDMESRVPHNLNISFNFVEGESLIMAVKDVAVSSGSACTSASLEPSYVLRALGRNDELAHSSIRFTVGRFTTEQDVDYVINLLNTKIAKLRDLSPLWEMHKDGVDLSTIQWAAH
>NZ_CP018811.1|WP_075156759.1|1987035_1987464_+|Fe-S-cluster-assembly-scaffold-IscU
MAYSDKVLDHYENPRNVGSFSKDDDAVGTGMVGAPACGDVMKLQIRVGADGVIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDQALEIKNTQIAEELALPPVKIHCSILAEDAIKAAVADYKHRHGGEAGESAAPAGDKQAA
>NZ_CP018811.1|WP_075156760.1|1987581_1987905_+|iron-sulfur-cluster-assembly-protein-IscA
MAITLTEKAAQHVQKYLSRRGKGVGLRVGVRTTGCSGLAYKLEYVDELAPEDEVFECNGVKVVVDPKSLAYIDGTELDFAREGLNEGFKFNNPNAKDECGCGESFRV
>NZ_CP018811.1|WP_075156761.1|1987972_1988500_+|Fe-S-protein-assembly-co-chaperone-HscB
MASLNDSHFDLFHLPAQFALDTQALDDAYRTVQAQVHPDRFAAAGDAQKRIAMQWATRANEAYRTLRDPLKRATYLLSLRGIDVGAENNTAMEPAFLMQQMEWRERIEDAAAAKNVDELDALLAELRDEERVRFTKLAALLDSGSDQAASEAVRQLMFIERVASEIDSQIGKLED
>NZ_CP018811.1|WP_075156762.1|1988660_1990532_+|Fe-S-protein-assembly-chaperone-HscA
MALLQISEPGMAPAPHQRRLAVGIDLGTTNSLVAAVRSGVPDVLPDEEGHALLPSVVRYLQNGGRRIGRAAKAEAATDPRNTIVSVKRFMGRGKSEVEGAENAPYDFVDAPGMVQIRTIDGVKSPVEVSAEILATLRQRAEDTLGDELVGAVITVPAYFDEAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDNGAEGLYAVFDLGGGTFDLSILKLTKGVFEVLAAGGDSALGGDDFDHALFRHVLAQAGVARDTLTPEDVRLLLDTVRSTKEALSGAAQAKVDVALASGVRIDQTIEESTFAAITESLVQRTLGPTRKALRDAKVTPADIKGVVLVGGATRMPVIRRAVESFFGQPPLINLDPDQVVALGAAIQADLLAGNRGADGDEWLLLDVIPLSLGVETMGGLTEKIIPRNSTIPVARAQDFTTFKDGQTAMAIHVVQGERELVSDCRSLARFELRGIPPMAAGAARIRVTYQVDADGLLSVFAREQHSGVEASVVVKPSYGLADDDIARMLEDSFSAAEVDMRARALREAQVEAQRLVEATDAALAADADLLDADERGALDTLLAALRNVAPGNDADAIEAATKALAAGTDEFAARRMDKGIRRALAGRKLDEI
>NZ_CP018811.1|WP_075156763.1|1990666_1991008_+|ISC-system-2Fe-2S-type-ferredoxin
MPQIVVLPHVELCPEGAVIDAVPGKSICDTLLENGIEIEHACEKSCACTTCHVIVREGFDALEPSEEAEDDLLDKAWGLERESRLSCQAIVPENDDLVVEIPRYSINHAKENH
>NZ_CP018811.1|WP_075156764.1|1991023_1991221_+|Fe-S-cluster-assembly-protein-IscX
MKWTDTQDIAMALTDKHPDIDPQQVRFTDLHRWVMELDGFDDDPNRSNEKILEAIQAAWIEDADY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3914849 : 3924190

unidentified_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075158074.1\|3914849_3916574_+	polynucleotide adenylyltransferase PcnB	H7BUW3	unidentified_phage	5.8e-22	28.3
WP_075158075.1\|3916622_3917189_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_075158076.1\|3917185_3917881_+	deoxynucleoside kinase	A0A249XZR7	Enterococcus_phage	5.2e-06	29.2
WP_075158077.1\|3917931_3918747_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	2.8e-35	30.5
WP_075158974.1\|3918814_3920734_-	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	1.1e-53	35.5
WP_075158078.1\|3920770_3921907_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	3.5e-23	27.9
WP_075158079.1\|3922243_3924190_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	3.8e-147	49.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP018813

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 8597

Sinorhizobium_phage(20.0%)

integrase

attL 102:115|attR 11858:11871

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
102:115	attL	NA	NA	NA	NA
WP_156884052.1\|974_1253_-	hypothetical protein	NA	NA	NA	NA
WP_075161152.1\|1285_1768_+	hypothetical protein	A0A291AUQ6	Sinorhizobium_phage	1.1e-23	41.1
WP_075161151.1\|1844_2129_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_075161150.1\|2132_3197_+\|integrase	tyrosine-type recombinase/integrase	C8CLF4	Xylella_phage	9.9e-89	52.2
WP_156883926.1\|3520_4210_-	hypothetical protein	A0A1E1GEJ4	Vibrio_phage	7.5e-05	36.6
WP_083615279.1\|4235_5315_-	hypothetical protein	Q6QI97	Burkholderia_phage	1.8e-37	39.0
WP_075159057.1\|5526_5850_+	hypothetical protein	NA	NA	NA	NA
WP_075159056.1\|5905_6640_-	hypothetical protein	NA	NA	NA	NA
WP_075159055.1\|6639_7092_-	hypothetical protein	NA	NA	NA	NA
WP_075159054.1\|7116_7305_-	hypothetical protein	NA	NA	NA	NA
WP_075159053.1\|7301_7505_-	hypothetical protein	NA	NA	NA	NA
WP_075159052.1\|7501_8008_-	hypothetical protein	NA	NA	NA	NA
WP_075159051.1\|8147_8597_-	glycoside hydrolase family protein	A0A0H4A794	Pseudoalteromonas_phage	8.0e-16	37.8
11858:11871	attR	NA	NA	NA	NA

DBSCAN-SWA_2

14104 : 16129

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_156884105.1\|14104_14500_-	hypothetical protein	B3GAJ9	uncultured_virus	1.9e-16	37.2
WP_083615572.1\|14325_15210_-	hypothetical protein	B3GAJ9	uncultured_virus	3.4e-10	52.5
WP_075161635.1\|15199_15442_-	hypothetical protein	NA	NA	NA	NA
WP_156884106.1\|15706_16129_-	hypothetical protein	B3GAJ7	uncultured_virus	1.4e-09	40.5

DBSCAN-SWA_3

21876 : 23871

uncultured_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075161201.1\|21876_23871_-	hypothetical protein	B3GAJ6	uncultured_virus	1.8e-83	35.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP018812

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018812_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018812_1

2318091-2318178

Orphan

Consensus_repeat	Method
GCCGCCCGTGCTGCTGCCGGTGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018812_1

>merge|NZ_CP018812|1|2318091-2318178|CRISPRCasFinder
GCTGCCGGTATTGCCGCCCGTGCTGCTGCCGGTGTTGTTCGAGCCGGTGCCCGGATCGGTTGCGCCGCCGGTGCTGCTGCCGGTGTTG

>NZ_CP018812|1|1|2318091-2318178|CRISPRCasFinder
GCTGCCGGTATTGCCGCCCGTGCTG	CTGCCGGTGTTGTTCGAGCCGGTGCCCGGATCGGTTGC
GCCGCCGGTGCTGCTGCCGGTGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018812.1\|WP_083615551.1\|2315027_2315525_-\|type-II-secretion-system-major-pseudopilin-GspG	unknown	unknown	gnl\|CDD\|130771
NZ_CP018812.1\|WP_075160723.1\|2306424_2308953_-\|secretion-protein	unknown	unknown	gnl\|CDD\|227133
NZ_CP018812.1\|WP_075160724.1\|2309056_2309614_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018812.1\|WP_075160727.1\|2313754_2314942_-\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP018812.1\|WP_083615458.1\|2329144_2329759_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227803
NZ_CP018812.1\|WP_075160722.1\|2305945_2306428_-\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP018812.1\|WP_156884030.1\|2305547_2305940_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|130771
NZ_CP018812.1\|WP_075160735.1\|2335245_2335812_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378696
NZ_CP018812.1\|WP_075161543.1\|2309610_2310228_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018812.1\|WP_075161546.1\|2326745_2327504_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|378278
NZ_CP018812.1\|WP_156884031.1\|2324624_2326250_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372668
NZ_CP018812.1\|WP_075160732.1\|2329796_2330384_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227803
NZ_CP018812.1\|WP_075160725.1\|2310224_2310776_-\|PilN-domain-containing-protein	unknown	unknown	gnl\|CDD\|377469
NZ_CP018812.1\|WP_075160734.1\|2331910_2332810_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP018812.1\|WP_075161548.1\|2334147_2334822_-\|haloacid-dehalogenase-type-II	unknown	unknown	gnl\|CDD\|130495
NZ_CP018812.1\|WP_075160733.1\|2330925_2331696_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187602
NZ_CP018812.1\|WP_083615457.1\|2327695_2328937_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP018812.1\|WP_156884032.1\|2333008_2333896_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP018812.1\|WP_083615456.1\|2311901_2313752_-\|type-II/IV-secretion-system-protein	unknown	unknown	gnl\|CDD\|225363
NZ_CP018812.1\|WP_075160726.1\|2310772_2311909_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP018812.1\|WP_083615551.1\|2315027_2315525_-\|type-II-secretion-system-major-pseudopilin-GspG	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.56502e-52
NZ_CP018812.1\|WP_075160723.1\|2306424_2308953_-\|secretion-protein	gnl\|CDD\|227133	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].	5.31752e-62
NZ_CP018812.1\|WP_075160727.1\|2313754_2314942_-\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	2.64069e-103
NZ_CP018812.1\|WP_083615458.1\|2329144_2329759_+\|hypothetical-protein	gnl\|CDD\|227803	COG5516, COG5516, Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [General function prediction only].	7.95586e-31
NZ_CP018812.1\|WP_075160722.1\|2305945_2306428_-\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	7.58233e-16
NZ_CP018812.1\|WP_156884030.1\|2305547_2305940_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	5.21365e-15
NZ_CP018812.1\|WP_075160735.1\|2335245_2335812_-\|hypothetical-protein	gnl\|CDD\|378696	pfam11706, zf-CGNR, CGNR zinc finger. This family consists of a C-terminal zinc finger domain. It seems likely to be DNA-binding given the conservation of many positively charged residues. The domain is named after a highly conserved motif found in many members of the family.	4.83923e-16
NZ_CP018812.1\|WP_075160733.1\|2330925_2331696_-\|SDR-family-oxidoreductase	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	6.04692e-71
NZ_CP018812.1\|WP_075161546.1\|2326745_2327504_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|378278	pfam09859, Oxygenase-NA, Oxygenase, catalyzing oxidative methylation of damaged DNA. This family of bacterial sequences is predicted to catalyze oxidative de-methylation of damaged bases in DNA.	1.3286e-122
NZ_CP018812.1\|WP_156884031.1\|2324624_2326250_+\|hypothetical-protein	gnl\|CDD\|372668	pfam13678, Peptidase_M85, NFkB-p65-degrading zinc protease. This family of bacterial metallo-peptidases is thought to compromise the inflammatory response by degrading p65 thereby down-regulating the NF-kappaB signalling pathway. NF-kappa-B is a pleiotropic transcription factor which is present in almost all cell types and is involved in many biological processes such as inflammation, immunity, differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50, REL and NFKB2/p52; and the heterodimeric p65-p50 complex appears to be most abundant one.	2.64006e-67
NZ_CP018812.1\|WP_075160732.1\|2329796_2330384_-\|hypothetical-protein	gnl\|CDD\|227803	COG5516, COG5516, Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [General function prediction only].	3.12094e-31
NZ_CP018812.1\|WP_075160725.1\|2310224_2310776_-\|PilN-domain-containing-protein	gnl\|CDD\|377469	pfam05137, PilN, Fimbrial assembly protein (PilN).	5.14195e-05
NZ_CP018812.1\|WP_075161548.1\|2334147_2334822_-\|haloacid-dehalogenase-type-II	gnl\|CDD\|130495	TIGR01428, Haloacetate_dehalogenase, 2-haloalkanoic acid dehalogenase, type II. Catalyzes the hydrolytic dehalogenation of small L-2-haloalkanoic acids to yield the corresponding D-2-hydroxyalkanoic acids. Belongs to the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), class (subfamily) I. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.	7.22143e-76
NZ_CP018812.1\|WP_075160734.1\|2331910_2332810_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	5.74309e-39
NZ_CP018812.1\|WP_156884032.1\|2333008_2333896_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	6.52255e-35
NZ_CP018812.1\|WP_083615456.1\|2311901_2313752_-\|type-II/IV-secretion-system-protein	gnl\|CDD\|225363	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP018812.1\|WP_083615457.1\|2327695_2328937_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	4.25085e-65

>NZ_CP018812.1|WP_083615551.1|2315027_2315525_-|type-II-secretion-system-major-pseudopilin-GspG
MRSPQAGQTRCVAQRHRQGHRQEQVQRREQARRQGGFTLLELLVVLVIIGMLAALVGPRYFAQLGKSQVTVARAQIDVFTKAVDNFRLDVGRYPTTQEGLAALVVKPANADKWAGPYLKKEVPLDPWGHPYIYRIPGTKSDYAIISNGPDSQSGTNGESAQISSE
>NZ_CP018812.1|WP_075160727.1|2313754_2314942_-|type-II-secretion-system-F-family-protein
MQYEVRALAPDNQIVALVIDAHDENDARRQVEARGLHATRLAPRRSLRRPAASRGALSLVLFSEELLALLTAGLSIVEGLEALLEREGSGRLRGVLERLLSGLREGKRFSSLLAEQPDVFPPLYIGIVRAAEGTSDLPRSLQRYIDYQSRIDLVRNKLVSAAIYPCILLCVGGGVAAFLIAYVVPRFATIYEGTGRSLPWMSQLLLDWGKFAAAHGLPLAGATLGIVFAGGTVLRAAIAKAGLATLLARIPVIGPHLRIYQLSRLYLTLGMLLEGGIPIVPAMETAGGTISPALRERLMQARIAVQAGTNLSSAFDNEGLTTPISLRMLRVGERSGELGDMLTKSAAFYDGEISRWIDRFTRLFEPLLMSAIGLVVGTIVILLYMPIFDLAESLS
>NZ_CP018812.1|WP_083615456.1|2311901_2313752_-|type-II/IV-secretion-system-protein
MPANVVPLAAGVPGVPDASDVSDAPAGSLSAQPVSLARPVLKLDAELLARARAAASATQRHLIVELEAMTGSEPRELLQTLAQQLAMQVIETPAMLAMQPAFDRVPLSRAMQRRCALLRDVDNTVKHAAQNLPEDANDRVASLCGTLIGVVTSPFDLDLQTWLAAQAGGPIEIRVTLPSDLQAYHTRMEESARAVDSLVTDGGDTRADGRTAQVLSFETVSEAASPAVKLVNSTLYDALKAGASDIHMESTATGLALKYRVDGVLDAAATIHGVETAEQVISRLKVLAELDIAERRVPQDGSFRVAAGGRDIDLRVSIMPSIHGEDAVIRILDKRAMIEAYGSLTLEALGYDGESLEALRRLAEEPYGMLLVTGPTGSGKTTTLYAALTEIHNGRDKIITIEDPVEYQLPGILQIPVNEKKGLTFARGLRSILRHDPDKIMVGEIRDRETAEIAVQSALTGHLVLTTVHANNVFDVFGRFSHMGIDPYAFVSALNGIWAQRLLRVNCSHCATPYTPTDAELARVGLTRAEVADFDFRQGAGCGDCRGTGYRGRRAIAEILILDDEIRDMVVEKQPIRLIKEVARRNGTRHLREVALAQVKRGETTLAEVKRVTLNA
>NZ_CP018812.1|WP_075160726.1|2310772_2311909_-|hypothetical-protein
MRDVLKRWSTTPVSIPGLPRVSLKWRRGVCRIGLSRDGVAILRTNGGRGDGVNALGARHGGTGLLADARANSSVGPAASSVTNAVALRQAAAPPLLAERSLRATSPALTPDELAAAIGDALDESGCGGLPIHATFGDDLVRYFIVTPPPNGTRVQDLRTAAEVRFQVLYGESAAAWHLVADWHAARPFLACAVPLRMHMALRLAARARRSCLVSAAPNFIGAWNRWRRRVTGDAWLATLHDGALTLGVIDGAGRRARLAAIRTLKLVEEAPPLAWLHEQLVRTALLDNVHAPKLLHVYGPLPPAWQQTPRAAMSGNSSTNASSSLNPSLDPSPNPIDSFIEVRACTAVQAAFASPEGAIATWSSAAQLVFGSQGGASR
>NZ_CP018812.1|WP_075160725.1|2310224_2310776_-|PilN-domain-containing-protein
MKRLHIDLAPLSARRQLYRSHPVMRVLALAALIACVIAGVRAHKLLGRLDVLERQQERIASHHAQAARARASVASRPVDAKQGAAVNAAVARLNLPWDDILDAVEAATPPKVALLSITPDASRALLRIEAEGAGSDAMIGYLQALEQQPLFGRVDLVRHEMSKDHMDGVIRFQIEARWRRSAS
>NZ_CP018812.1|WP_075161543.1|2309610_2310228_-|hypothetical-protein
MKMPDLMRALLWTRLALRRTGIDALAAGGLAIGAATMWFVLLPGLTVRIADEARAVARARSAPPPAPVISPQALAAQRLDAFYAALGDAGHTEQVVMHLFDAASETGVVLDKTEYKPARDAAGRFETYSIVLPVKGDYAQLRRFCEKVLLTVPYAALDDMRFKRSSANDQTVEASLRFTVFLRPVQQGEGAANTAALVAAGEAQR
>NZ_CP018812.1|WP_075160724.1|2309056_2309614_-|hypothetical-protein
MKPLHAVLAVAFVVCGGLLIFGRHDAPDQVVEASPRAAAAARTAAPAGRGTDATSAANPDNGALVAVGALRSRKELFGSAGGGHHALFGSQTWAPALPSVAPAGAQVPPLPSAPIAPTLPFTYIGKQASDGAWEVYLAHGDETVIVHDKSVIDATYRVDSIKPPVLTLTYLPLKLVQTIDIGSAD
>NZ_CP018812.1|WP_075160723.1|2306424_2308953_-|secretion-protein
MPRRQRRARRASLQWLAPLVLAVALPVLLAGCAAQKAYRAGEDLVAQGKVDEGLAKMQEAMTQEPHDAQYRATWLAVRASTLTHDNEQGDRLAASGARDAARKSYQHALTLDPENERALAGLAALDQAARLDALVAQAEAMAAKQNVAGARRLVEQVLTEAPEQPRALALQRRLTLDSGATRIEAALAAAYRRPIHIDFKDASLKQVFDVISRSANMNFLFDKDVRTDQHTSIFLRNSTIEAAVRYVLATNQLAQQVLDENTVLIYPNTPAKLKDYQELAVRTFFLSNAEAKTVANTLKTILKAHDIVVDEKLNLVIVRDTPDVIHMAEKLVALEDVAEPEVMLEVEVLEVQRNSTQSLGIQWPDSLTVTPLPVGSVISNTGSGNNTGNGFGNPFNSGSFGIPSSGGSNPPALSLNDLFHQTSKTLGVSQIQATAQANLVDSNAKLLTNPRIRVRNHEKAKILIGERVPNITSTATSTGFVSQSVNYIDVGLTLNVEPSIYLDNSVGIKVALEVSSLLNVVSGGNSGTTAYEIGTRTASTVLQLKNGETDVLAGLIDSEERTSGNKIPGFGQLPVLGRLFGATTDDDKNTEIVLAITPHLIRNIQRPDAAAAYFSAGTETNSQGLMQSNGISSASFSPGSSSSSTSATPGKAPSSGFGNNSAQGTNGLGSNYGGAGSGTVGGGAGGFAGGEGDPVVAGGAPGTGTAQMTVQGPQQVKVGDSVTVTVTMQADQPLLIVPANVTYDSSKLQFTGVTEGDFLKQGGAQTNFSSRVGQNGQLSLSDSASGGTGATASATYAVLSFRAIAPSSQTSIQVQPGTLLGLTGIPVTALPPTPYDLTVNPK
>NZ_CP018812.1|WP_075160722.1|2305945_2306428_-|type-II-secretion-system-protein
MTQARARGFTLIELLVTLAILGVLACMTVPVAQVMRQREREQDLRAALHEIRDAIDAYHTASKDGRIQKEAGATDYPANLELLVQGVPDQQDPKAHKMYFLRRIPRDPMNDNDPQLADSATWGKRAYASEADDPQEGDDVYDVYSLSNGIGLNGIPYRKW
>NZ_CP018812.1|WP_156884030.1|2305547_2305940_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MQGARHAKTAAGFTLIELLIVLAIIALMLTLALPEYFHSIDSSKEKVLVQNLHVTRVAIDQFYGDQGRYPDSLQELVDKHYLRSLPFDPVADSATTWQIVAPDEQFPGNVYDIKSGAEGTDAEGKAYGAM
>NZ_CP018812.1|WP_156884031.1|2324624_2326250_+|hypothetical-protein
MNTTITGSSPWPTSSSFADAPPHTKITQDRSSRAAQTNHALRQPPRARRDDPSIPTRTSDAFADYVLRAGSQAPMTEEQMFSARIGILRSISASRPRLADRQTADMIGNTLLDAMNRSPTFRSVVSYSFARNGGRFDNLTFRNEYIHNATYLGAMTPIGSMTISYLQSHGTNPLPVTAESDANRAWRNIGPYVNLGVAPNPDTPASQAWQAVLMHEITHHLTGADDPPASSQGSHLGPTEIIARRIAGEMGWALPTFRGYGDPARVAYHLQANWTGLLEAAQRNGAHEHSFFERLENISDAHDASADFHELDPPGAAGSATHNASVLADMEPDDLERVRFHDGEVSFFPFADSAPAGKPDGYQSAYAASSASWNTQGRFFRYGEPVGGNPHVRQFDFPDGSKAVITAHQPTLAASDLTGFETAMAVGGAALGGAVIGFVGSGGNPAGAYLGGAAGAAAGSAIAAKFPYDRIWQGYTLEYFNQGETAPFYTQSMYAWDSGWSRVGLLSRQRDSNLWPDYADTNPDKNWNWWTWRTGNAPKRT
>NZ_CP018812.1|WP_075161546.1|2326745_2327504_+|2OG-Fe(II)-oxygenase
MHGARHATDAGASVLPDRPVDERVASLDWPRIEDELDSFGCATAAGLLDPQECDRLAGLYMQDAIFRSRVVMERHGFGRGEYKYFAYPLPDIVGTLRGALYPHLVAVANRWNEALRIGVRYPSLHRDFIERCHRAGQTRPTPLLLRYKAGDYNCLHQDLYGEHVFPIQAAILLSEPGKDFTGGEFVITEQRPRMQSRAEVVTLNKGDAVIFTVNSRPVQGTRGIYRVNLRHGVSRLRSGYRHTVGVIFHDAL
>NZ_CP018812.1|WP_083615457.1|2327695_2328937_+|MFS-transporter
MSNAPLSPGNSMAQVTETPAFDRRVWLLALAFFAIGTDFNVVSGILPSLAQSLDVSVPAAGQVVSSYALFYAVCAPVLAGLTAHIPRKPLVVISLTAFAAANAASALSPTYAFLIGTRIVAAFAASVFSPAGYGLAATLARADRRGVALAAALSGITISLVVGVPIGAYIGNRFGWPSSFWFVTALTLIGAAGLAMRLPQIDAPAAAQAPGLAARFAPLANREVLLGMTPSLVWYVAMFSLYTYLGAAMTERGMTKEELSAIYGALGVGCIAGNHIGGKLSDRIGSQRVVAVALVIQIANLVWLGLAGSSMVANACSIAIFGMNMWFLFPAQQSRLLSISPQHGPLVLALNNSTMYLGGAIGSAASALLIRHGIATSNLPWVSCVFFFAALVLFALCSWALKRSAASGQQGVA
>NZ_CP018812.1|WP_083615458.1|2329144_2329759_+|hypothetical-protein
MGDLSRRTPMPAQFLTLSDDMVLDFLNTSSAEDTHLHEYFASDQHVIDWMQAHRLIGTRKLPLFADGALVNAAHALGEAIRKALFERKAGEKVQVGSLNACLAQGRYRLTLVRQSNGQLQLMHEYEHSTPEQFLAQIASAAAELLAAGDFALIRKCESDTCSLWFYDRTKAHRRRWCSMARCGNRRKVAAYRARRKGRAGAGIA
>NZ_CP018812.1|WP_075160732.1|2329796_2330384_-|hypothetical-protein
MASPLASVRAQDAVLEFLNTVVPRNGQLLDLFQSDSDVLAWLEGAGLLDMIEMRGDGLYCDLALEARQLREDVRQLVLQKKLGQCVDAELLNRVLSAGSYQIELAEDGEGNLNALYRFPAQSAMQVLVPVAIAAAQLLARGDFLLIRQCESPDCPLWFYDRTKSHRRRWCNMTICGNRQKAARFRTRLLCGGLVE
>NZ_CP018812.1|WP_075160733.1|2330925_2331696_-|SDR-family-oxidoreductase
MEKKIAIVTGASRGIGRATAIRLAQDFGGVAIAARDAELLKATARDVVAAGAESLDICIDLREPIAAEAVVAKTLDRFGRIDAVVNIAGAVPQIDVLEMTDEQWDDGFALKLHGARRLAIHAWDALKATRGAVIFTSGNSAEAPKSGFAAVATVNAAIVAMAKAFADRGIGDGIRVNSVLPGPVMTDRRRSYMEKYAASHGMTVEEALDKFPGLAGITRYGKPDDIAELMAFMLSPAGEWLIGAALRMDGGEVKGL
>NZ_CP018812.1|WP_075160734.1|2331910_2332810_-|LysR-family-transcriptional-regulator
MKSNVDYQARLFIEIAAHKSLSAAAEAMSLTQSGLSRHLASLEEFIGQPLFIRHGRGVELTEAGRKLLEVVSAAYQLVDNTMLQLRNEHGVTDGSIHIATIHTLSYYFMAEVAARFMAQRPSASLALLGRSSPGVVELVESGRAEIGFAYDSAVASDQLEITPLFEDTMCLVVHERSRFATKASVDLRSESVPLVAFPAGYALRKMLHTKEFDATVTAEVETVDAMLKLVSMTNGQCILPDLIPEKLLQEYQLVSVKIEQPMMRRWVVAVTRRGRPLSAMTALMLEIARESASKVMSEA
>NZ_CP018812.1|WP_156884032.1|2333008_2333896_-|alpha/beta-fold-hydrolase
MSKGHNVPAVSVKRIEADGVGVFYREAGPATAPVVLLLHGFPSSSHMYRRLMPRLADTYRVIAPDLPGFGFTDVPDARGYKYSFDALAQTMAAFVDKLGLKRYAVYVFDYGAPVGLRLAVKFPERVSALISQNGNAYEEGLGDAWDPIRKYWAEPTPAHRKTVHDAILNFEGTRFQYLHGVSSPDSVPPESYTLDAALLERPGQKDIQLDLFLDYRSNLKLYPVFQQFFREKQPPTLAIWGKNDPFFIPPGAEAYRRDNPGAVVRMLDTGHFALETHVDEIAAAMRDFLAEHLKP
>NZ_CP018812.1|WP_075161548.1|2334147_2334822_-|haloacid-dehalogenase-type-II
MSDGIRAFVFDAYGTLLDVNAAVKRNAASMGEKADAFAAMWRSRQLEYCWTRTMMNRYEDFWTVTEEALVYTLRTFGLDHDEDLKARLLSAYFVLDAHPEARQALARLKDSQVKISVLSNGTNQMIKAALEAGGLLEFIDAALSVDDLKVYKPDPRVYQYACDTLNVKPSQVVFVSSNAWDLAGASSFGFKAARINRSQLPPEYEFAGLHSEHRSLVELATLIR
>NZ_CP018812.1|WP_075160735.1|2335245_2335812_-|hypothetical-protein
MEPEFRFNSGRVSLDLAATIRRRASKPLDIMASAGASGRWLKAAGLFSDVPALSRSEEARLVELREAIWQMVTGAMHGRLPERAVSIVNRAAKYPLGMPQLDSTTGTVSVVSDDPLATALSIIARDAIDLVTGALKLRVKTCDQPDCRMLFVDTSPSGQRRWCSMQRCGSRAKVHAFKRKHARAAHMR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1399987 : 1431945

uncultured_Caudovirales_phage(42.86%)

integrase,plate,transposase

attL 1389395:1389411|attR 1434967:1434983

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1389395:1389411	attL	NA	NA	NA	NA
WP_075160053.1\|1399987_1401334_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_075160054.1\|1401343_1401856_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_075160055.1\|1401943_1402426_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_075160056.1\|1402621_1403131_-	hypothetical protein	NA	NA	NA	NA
WP_075160057.1\|1403127_1403490_-	DUF2778 domain-containing protein	A0A2H4IBA1	Erwinia_phage	1.4e-18	46.2
WP_075160058.1\|1403584_1405090_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_075160059.1\|1405172_1405718_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_075160060.1\|1405753_1408456_-	type VI secretion system ATPase TssH	A0A2I7SAX5	Vibrio_phage	2.1e-74	31.6
WP_156883986.1\|1409041_1409746_+	TagK domain-containing protein	NA	NA	NA	NA
WP_075160062.1\|1409742_1410618_+	ImpE/SciE family protein	NA	NA	NA	NA
WP_083615385.1\|1410614_1411151_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_075160064.1\|1411166_1413056_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_075160065.1\|1413055_1414162_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_075160066.1\|1414148_1415246_+	type VI secretion protein ImpA	NA	NA	NA	NA
WP_075160067.1\|1415252_1415756_+	glycoside hydrolase family protein	NA	NA	NA	NA
WP_075160068.1\|1415752_1416172_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_083615386.1\|1416220_1418188_+	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	8.1e-28	24.8
WP_075160069.1\|1418239_1418686_+	DcrB-related protein	NA	NA	NA	NA
WP_075160070.1\|1418741_1423223_+	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	1.4e-30	38.9
WP_075160071.1\|1423219_1423501_+	hypothetical protein	NA	NA	NA	NA
WP_156883987.1\|1424074_1424464_+	hypothetical protein	NA	NA	NA	NA
WP_083615387.1\|1425412_1426366_+\|integrase	tyrosine-type recombinase/integrase	A0A166YH27	Gordonia_phage	1.7e-07	28.8
WP_156883988.1\|1426806_1427268_+	hypothetical protein	NA	NA	NA	NA
WP_075160077.1\|1427932_1428163_-	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA
WP_075160078.1\|1428259_1428991_+	hypothetical protein	A0A2H4JFP5	uncultured_Caudovirales_phage	5.1e-28	52.3
WP_075160079.1\|1429007_1429391_+	hypothetical protein	NA	NA	NA	NA
WP_156883989.1\|1429472_1429673_-	hypothetical protein	NA	NA	NA	NA
WP_075157113.1\|1430406_1431945_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	6.1e-47	36.3
1434967:1434983	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2931714 : 2951870

Pseudomonas_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_083615499.1\|2931714_2933067_-	RNA-directed DNA polymerase	H7BVN7	unidentified_phage	1.5e-41	33.2
WP_075161159.1\|2933059_2933437_-	four helix bundle protein	NA	NA	NA	NA
WP_075161160.1\|2933452_2933914_-	DUF1566 domain-containing protein	NA	NA	NA	NA
WP_075161161.1\|2933943_2934303_-	hypothetical protein	NA	NA	NA	NA
WP_075161162.1\|2934464_2935145_-	hypothetical protein	A9YX18	Burkholderia_phage	1.3e-17	80.0
WP_075161163.1\|2935172_2935844_-	cell division protein FtsK	J7I0T4	Pseudomonas_phage	2.8e-25	38.8
WP_075161164.1\|2935880_2936501_-	3'-5' exonuclease	I3PUZ1	Vibrio_phage	3.8e-40	44.9
WP_075161165.1\|2936531_2938343_-	AAA family ATPase	J7HXJ7	Pseudomonas_phage	2.5e-68	33.7
WP_075161166.1\|2938442_2939696_-	hypothetical protein	A0A2I7RZ22	Vibrio_phage	8.8e-20	35.2
WP_083615500.1\|2939692_2940187_-	hypothetical protein	NA	NA	NA	NA
WP_075161168.1\|2940159_2940960_-	hypothetical protein	H2BD50	Pseudomonas_phage	4.2e-76	52.8
WP_156884054.1\|2940956_2941118_-	hypothetical protein	NA	NA	NA	NA
WP_075161169.1\|2941114_2941336_-	hypothetical protein	NA	NA	NA	NA
WP_075161625.1\|2942346_2942844_-	DUF1566 domain-containing protein	A0A0A0YR68	Pseudomonas_phage	2.0e-28	45.4
WP_075161171.1\|2943021_2943216_-	hypothetical protein	NA	NA	NA	NA
WP_075161172.1\|2943378_2943759_-	hypothetical protein	NA	NA	NA	NA
WP_083615569.1\|2943954_2944674_-	LexA family transcriptional repressor	B6SCU0	Bacteriophage	1.2e-34	50.0
WP_083615502.1\|2945039_2945324_+	hypothetical protein	A0A0R6PHG5	Moraxella_phage	8.9e-05	40.7
WP_075161173.1\|2945467_2945839_+	hypothetical protein	A9YWX9	Burkholderia_phage	7.0e-34	57.4
WP_075161174.1\|2945835_2946030_+	hypothetical protein	NA	NA	NA	NA
WP_156884055.1\|2946026_2946179_+	hypothetical protein	NA	NA	NA	NA
WP_075161175.1\|2946175_2948704_+	DNA methylase N-4	A0A1W6JTS4	Mycobacterium_phage	3.5e-310	62.5
WP_156884056.1\|2948700_2948871_+	hypothetical protein	NA	NA	NA	NA
WP_156884057.1\|2948878_2949055_+	hypothetical protein	NA	NA	NA	NA
WP_075161628.1\|2949506_2949809_+	hypothetical protein	NA	NA	NA	NA
WP_075161176.1\|2949805_2951197_+	replicative DNA helicase	C7BGG1	Burkholderia_phage	3.9e-93	47.7
WP_075161177.1\|2951193_2951385_+	hypothetical protein	NA	NA	NA	NA
WP_156884103.1\|2951468_2951870_+	hypothetical protein	R9ZZU8	Cellulophaga_phage	1.6e-31	58.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018811

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018813

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP018812

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection