CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP018817	Klebsiella pneumoniae strain AR_0049 plasmid unitig_1, complete sequence	0 crisprs	DEDDh	0	0
NZ_CP018819	Klebsiella pneumoniae strain AR_0049 plasmid unitig_3, complete sequence	0 crisprs	RT	0	3
NZ_CP018818	Klebsiella pneumoniae strain AR_0049 plasmid unitig_2, complete sequence	0 crisprs	csa3,cas3,RT	0	1
NZ_CP018816	Klebsiella pneumoniae strain AR_0049 chromosome, complete genome	2 crisprs	cas3,csa3,RT,DEDDh,DinG,WYL	1	11

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 65193

Escherichia_phage(30.0%)

transposase,integrase

attL 24627:24686|attR 69118:69939

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001776122.1\|1814_2780_+	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	1.6e-58	42.7
WP_001776120.1\|3259_3691_+	hypothetical protein	NA	NA	NA	NA
WP_001776119.1\|3723_4251_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	5.7e-21	39.5
WP_001166628.1\|4510_4966_-	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_004200999.1\|5037_5403_+	mercuric ion transporter MerT	NA	NA	NA	NA
WP_000732275.1\|5418_5694_+	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_000522996.1\|5721_6147_+	organomercurial transporter MerC	NA	NA	NA	NA
WP_000209296.1\|6185_7871_+	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
WP_001277466.1\|7888_8254_+	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_001087807.1\|8250_8487_+	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001446012.1\|8470_8590_-	hypothetical protein	NA	NA	NA	NA
WP_000993245.1\|8552_8765_+	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_003124096.1\|8895_9456_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	2.1e-50	88.6
WP_001138070.1\|9458_12425_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	72.9
WP_000427619.1\|12503_13508_+\|transposase	IS110-like element IS5075 family transposase	NA	NA	NA	NA
WP_000954592.1\|13689_13866_-	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_001043260.1\|14195_15011_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	5.9e-09	27.6
WP_001082319.1\|15071_15875_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000480968.1\|15874_16711_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001120891.1\|16682_17222_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_000027057.1\|17431_18292_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_001235713.1\|18474_19032_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000608644.1\|19595_20858_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_000239590.1\|21113_21989_+	class A extended-spectrum beta-lactamase CTX-M-15	A0A1B0VBP7	Salmonella_phage	1.1e-125	82.4
WP_001393253.1\|22035_22368_-	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
24627:24686	attL	NA	NA	NA	NA
WP_020324562.1\|24689_25394_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.9e-138	99.6
WP_002063889.1\|26587_27130_-	AAA family ATPase	NA	NA	NA	NA
WP_000557452.1\|27142_28003_-	aminoglycoside N-acetyltransferase AAC(3)-IIa	NA	NA	NA	NA
WP_020324562.1\|28109_28814_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.9e-138	99.6
WP_001334766.1\|29445_30276_-	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_063840321.1\|30406_30961_-	fluoroquinolone-acetylating aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib-cr5	NA	NA	NA	NA
WP_020324562.1\|31104_31809_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.9e-138	99.6
WP_004176269.1\|31945_32806_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|32826_33588_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|33849_34752_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004201219.1\|39369_40908_-\|transposase	IS66-like element ISKpn24 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.1e-280	94.3
WP_000612626.1\|40956_41304_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
WP_003031976.1\|41300_41705_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.3e-69	98.5
WP_025403922.1\|41898_42333_+	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_004201260.1\|42374_43019_-	quinolone resistance pentapeptide repeat protein QnrB9	NA	NA	NA	NA
WP_017896601.1\|43113_44103_-	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_003020532.1\|44258_44927_+	phage shock protein PspA	NA	NA	NA	NA
WP_003020509.1\|44981_45206_+	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_003020497.1\|45205_45565_+	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_003833267.1\|45573_45804_+	phage shock protein PspD	NA	NA	NA	NA
WP_004201265.1\|46250_46568_+	thiosulfate sulfurtransferase PspE	NA	NA	NA	NA
WP_020324562.1\|47362_48067_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.9e-138	99.6
WP_000176305.1\|48215_48827_-	DUF2913 family protein	NA	NA	NA	NA
WP_001568067.1\|48880_49162_-	hypothetical protein	NA	NA	NA	NA
WP_011977766.1\|49334_49670_+	C2H2-type zinc finger protein	NA	NA	NA	NA
WP_032428065.1\|50285_50420_+	hypothetical protein	NA	NA	NA	NA
WP_000807690.1\|51087_51843_-	replication initiation protein RepE	I3WF20	Macacine_betaherpesvirus	4.5e-136	96.0
WP_000861580.1\|52854_53046_-	hypothetical protein	NA	NA	NA	NA
WP_001039463.1\|53054_53441_-	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|54192_54897_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071549088.1\|54921_55434_+	restriction endonuclease	NA	NA	NA	NA
WP_001749967.1\|55438_55645_+	hypothetical protein	NA	NA	NA	NA
WP_001288432.1\|56026_57460_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	50.6
WP_004098817.1\|57493_58708_-	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001389365.1\|58968_59733_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001144737.1\|59875_60142_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_004201280.1\|60362_60836_-	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
WP_000845048.1\|60991_62005_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001749988.1\|62397_62967_+	recombinase family protein	E5FFF9	Burkholderia_phage	5.2e-36	43.2
WP_004201235.1\|63723_65193_+	HNH endonuclease	G0X580	Salmonella_phage	5.5e-21	51.3
69118:69939	attR	NA	NA	NA	NA

DBSCAN-SWA_2

69180 : 70748

Escherichia_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020324562.1\|69180_69885_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.9e-138	99.6
WP_001217881.1\|70190_70748_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4

DBSCAN-SWA_3

76883 : 84613

Escherichia_phage(50.0%)

integrase

attL 70331:70344|attR 81730:81743

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
70331:70344	attL	NA	NA	NA	NA
WP_000015958.1\|76883_77660_+\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
WP_000764642.1\|77717_77975_-	hypothetical protein	NA	NA	NA	NA
WP_032409716.1\|78103_78208_-	hypothetical protein	NA	NA	NA	NA
WP_004118283.1\|78742_79609_+	replication initiation protein	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
WP_000339857.1\|79965_80235_-	hypothetical protein	NA	NA	NA	NA
WP_000368714.1\|80649_81855_+	ParA family protein	A0A077SL49	Escherichia_phage	2.4e-163	69.6
81730:81743	attR	NA	NA	NA	NA
WP_000064120.1\|81854_82829_+	ParB/RepB/Spo0J family partition protein	Q38420	Escherichia_phage	2.6e-88	54.4
WP_004118291.1\|82910_84182_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.9e-151	63.3
WP_000776034.1\|84181_84613_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP018818

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

43824 : 85048

Escherichia_phage(44.44%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004201219.1\|43824_45363_+\|transposase	IS66-like element ISKpn24 family transposase	A0A0P0ZEB3	Stx2-converting_phage	5.1e-280	94.3
WP_017896554.1\|46261_46570_-	hypothetical protein	NA	NA	NA	NA
WP_001567366.1\|47063_47612_+	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_001567367.1\|47658_48093_+	cell envelope integrity protein TolA	NA	NA	NA	NA
WP_003026799.1\|48337_48604_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_003026803.1\|48591_49074_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001567368.1\|49274_50678_+\|transposase	ISNCY-like element ISKpn21 family transposase	NA	NA	NA	NA
WP_001567369.1\|50706_51339_-	hypothetical protein	NA	NA	NA	NA
WP_004200842.1\|51956_53720_+	DUF262 domain-containing protein	C4MZ12	Escherichia_phage	2.9e-08	41.3
WP_004200841.1\|54369_55233_-	hypothetical protein	NA	NA	NA	NA
WP_077255340.1\|55249_55675_-	hypothetical protein	NA	NA	NA	NA
WP_017896188.1\|56586_57471_+	hypothetical protein	NA	NA	NA	NA
WP_004200838.1\|58080_58629_-	thioredoxin fold domain-containing protein	NA	NA	NA	NA
WP_004200837.1\|59136_60132_+\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	3.5e-19	29.2
WP_004200835.1\|60369_61338_-	phage exclusion protein	NA	NA	NA	NA
WP_000421673.1\|61866_64176_+	ATPase	NA	NA	NA	NA
WP_004152291.1\|64179_65496_+	ATP-binding protein	NA	NA	NA	NA
WP_004200832.1\|65492_67688_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_004200827.1\|69014_69443_-	hypothetical protein	NA	NA	NA	NA
WP_004200826.1\|69452_69737_-	hypothetical protein	A0A1S6L2Z2	Erwinia_phage	1.5e-07	43.2
WP_032427995.1\|70218_70467_+	hypothetical protein	NA	NA	NA	NA
WP_072141180.1\|70675_70810_+	hypothetical protein	NA	NA	NA	NA
WP_004200825.1\|71104_71962_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_099913970.1\|71954_72032_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_004199332.1\|72248_72527_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_072141181.1\|72846_73326_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.7e-19	35.2
WP_004200823.1\|73502_73811_-	hypothetical protein	K7PKY8	Enterobacterial_phage	1.1e-08	31.7
WP_001351729.1\|75624_76017_+	cysteine hydrolase	NA	NA	NA	NA
WP_000058717.1\|76154_77039_+	EamA family transporter	NA	NA	NA	NA
WP_000804064.1\|77070_78270_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000164043.1\|78375_79026_+	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_087758686.1\|79057_79213_-	replication initiator protein	NA	NA	NA	NA
WP_001067855.1\|79203_79908_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000219391.1\|80029_80935_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_000004159.1\|80931_82170_+	MFS transporter	NA	NA	NA	NA
WP_001137892.1\|82169_82754_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001067858.1\|82982_83687_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001067858.1\|84343_85048_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP018816

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018816_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018816_1

4851300-4851395

Orphan

Consensus_repeat	Method
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018816_1

>merge|NZ_CP018816|1|4851300-4851395|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAACCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGTTGGCACTTTGTTGGCATTCTGTTGGCACAA

>NZ_CP018816|1|1|4851300-4851395|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGT
TGGCACTTTGTTGGCATTCTGTTGGCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018816.1\|WP_004151301.1\|4853676_4853892_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018816.1\|WP_004151294.1\|4848673_4849180_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018816.1\|WP_004151300.1\|4852636_4853326_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP018816.1\|WP_004199604.1\|4854574_4855420_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP018816.1\|WP_004151285.1\|4845016_4845154_-\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP018816.1\|WP_004151284.1\|4844493_4845024_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|379158
NZ_CP018816.1\|WP_001548453.1\|4852013_4852235_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP018816.1\|WP_004151306.1\|4855416_4856097_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP018816.1\|WP_004151299.1\|4852275_4852509_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP018816.1\|WP_004151302.1\|4853888_4853999_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018816.1\|WP_004151293.1\|4847724_4848567_-\|translation-repressor-RelE	unknown	unknown	gnl\|CDD\|379401
NZ_CP018816.1\|WP_004151295.1\|4849176_4849470_-\|protein-ren	unknown	unknown	gnl\|CDD\|238042
NZ_CP018816.1\|WP_004151288.1\|4845948_4846404_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP018816.1\|WP_004151304.1\|4854274_4854559_+\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP018816.1\|WP_004151303.1\|4853991_4854186_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018816.1\|WP_004151298.1\|4851781_4851928_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018816.1\|WP_004230547.1\|4849469_4850885_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP018816.1\|WP_004151286.1\|4845150_4845786_-\|protein-ninG	unknown	unknown	gnl\|CDD\|368603
NZ_CP018816.1\|WP_004151287.1\|4845778_4845949_-\|NinE-family-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP018816.1\|WP_004151291.1\|4846904_4847552_-\|DUF551-domain-containing-protein	unknown	unknown	gnl\|CDD\|367946

Protein	Function_ID	Function_description	E-value
NZ_CP018816.1\|WP_004151288.1\|4845948_4846404_-\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.50704e-78
NZ_CP018816.1\|WP_004230547.1\|4849469_4850885_-\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	9.32956e-159
NZ_CP018816.1\|WP_004151300.1\|4852636_4853326_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.58097e-27
NZ_CP018816.1\|WP_004199604.1\|4854574_4855420_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	3.34151e-34
NZ_CP018816.1\|WP_004151306.1\|4855416_4856097_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	1.68114e-32
NZ_CP018816.1\|WP_004151284.1\|4844493_4845024_-\|HNH-endonuclease	gnl\|CDD\|379158	pfam13392, HNH_3, HNH endonuclease. This is a zinc-binding loop of Fold group 7 as found in endo-deoxy-ribonucleases and HNH nucleases.	8.84074e-15
NZ_CP018816.1\|WP_001548453.1\|4852013_4852235_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	1.55058e-09
NZ_CP018816.1\|WP_004151299.1\|4852275_4852509_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.32854e-22
NZ_CP018816.1\|WP_004151295.1\|4849176_4849470_-\|protein-ren	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000668668
NZ_CP018816.1\|WP_004151293.1\|4847724_4848567_-\|translation-repressor-RelE	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	0.000117969
NZ_CP018816.1\|WP_004151291.1\|4846904_4847552_-\|DUF551-domain-containing-protein	gnl\|CDD\|367946	pfam04448, DUF551, Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	8.71432e-11
NZ_CP018816.1\|WP_004151286.1\|4845150_4845786_-\|protein-ninG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	9.44908e-60
NZ_CP018816.1\|WP_004151287.1\|4845778_4845949_-\|NinE-family-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.47696e-19

>NZ_CP018816.1|WP_004230547.1|4849469_4850885_-|AAA-family-ATPase
MTPPHSIEAEQSVLGGLLLDDDNSERTQKVLSILKPESFYARPHQVIFAEMRQMYRDHKPVDLLTLFDALESKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNSDLQKATGVMGALIETNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKILAKELDCVVVLLTQLNRDLEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEQKPTKRGGF
>NZ_CP018816.1|WP_004151295.1|4849176_4849470_-|protein-ren
MTGKDAILNYLKTHKTCSSPDVAAASGMTHTCINQAANILAKQGVLVAEARVWRTVYYRLATEEEIAGRKSTNQIFNECRQSPAMKRVLAVYGRTSA
>NZ_CP018816.1|WP_004151294.1|4848673_4849180_-|hypothetical-protein
MTITLQAVNKLIASMESAGELSIREQKFLKLAKEFRICSASLDAAIKTGNMLADQNAQLAAENVALKDINAWCKTDAFKNMYREFKTAEALGCSDADCMHDAMLVAIMHAPATPATDRIVAGIKADGVEEFAAKLRIPGDDQFFDALAKGIALAADDFAKQLREGADK
>NZ_CP018816.1|WP_004151293.1|4847724_4848567_-|translation-repressor-RelE
MTDITELAQSLKAAAEKASNGDWVKESGDGWEACCSANDQANGGFIIAHFVGPDAAENCEFVQAANPANVLALVEALEYYKSREERVTSLVRDNSKSWDELYRQVEAKGKRNVELVEALESEKRICATWRKTAESTSEKLEKAQAAERRWHRVASRVHEQACESDVKIDELEAIRAAAEKLVRCKGRYHSEQNYRALAALFGVNTPDLPPLEHENVHYADAAEMEIEALRQRIAELESRTVKLPPRVDSSNVPFAGNAWNCCLDEVEKRLTAAGIKMEAE
>NZ_CP018816.1|WP_004151291.1|4846904_4847552_-|DUF551-domain-containing-protein
MTNNQLAENSVIQLLNSVKLARDNAELADNRVDHSFYYALTIALEELQERRKAAMDSEPVLWAWHHLDMWHVTSHDGRARDLWLSGFKVIPLYRHAQPVLVIPDEMTAEQAYEIGYYYGDPVDVFARGANWMRQHIIDSTLAAAPQSPGSDPATVPGKWISVSERMPENDGAYLCWDNRYVTTYAFIFGAWQANQFIAKNITHWMPLPAGPQEVR
>NZ_CP018816.1|WP_004151288.1|4845948_4846404_-|hypothetical-protein
MNIPQCGIKLHNGNFSAIGKILQEQLSDGKCLRLQVKEWREKRSLSQNALSHMWYAEISEYLINSGRTDATPEWVKRNLKKTYLGCEEVTYTDFITGEKTTTWEPRHTSDLDTGEMHIFLTKVEAWCAQFGLALTIPHGCEYQQLQQKQEA
>NZ_CP018816.1|WP_004151287.1|4845778_4845949_-|NinE-family-protein
MSSLLAKVIERGIFRVPARRKRKVEDKPSDIPTLKDYTARLVDKKWLRLRARRPHA
>NZ_CP018816.1|WP_004151286.1|4845150_4845786_-|protein-ninG
MRKPARRKCAHCREWFHPAREGQVVCSFECASAIGKKQTAKAREAAKARAVKRQRESEKEGRQRRKARLAELRPNGYYKAQAQKAFNAYIRARDAALPCISCGETNPPDLHGGQWDCGHFKTVGAYPELRFEERNAHKQCKSCNAGAGKYTAKELTVAQQYEAGLVARYGQEYVDWLNGPHEMTNYRREDFIRIRDEYRAKLKALKQREAA
>NZ_CP018816.1|WP_004151285.1|4845016_4845154_-|YlcG-family-protein
MNHDIIERIRDRWKKLRLLRSRGTVLVDYLILRNFIASLSRGSYE
>NZ_CP018816.1|WP_004151284.1|4844493_4845024_-|HNH-endonuclease
MSKSEKSITQELLRTLLEYDPQTGIFRWKIKASSSAHPGDIAGCIDGQGYRVIRIYGKNRKAHRLAWLYVYGDEPEVIDHIDRNRSNNAIENLRAVTFSQNSANRAAKSKNKSGFTGVYWNELGKKWQASIVANGRTHYVGLFATAQEAAKARTEYARQLYANFYIPSFHDQEAAK
>NZ_CP018816.1|WP_004151298.1|4851781_4851928_-|hypothetical-protein
MPKSNRFYQAQTHKNVTRDRFIRSVNPVVGMKMRAILEELKRKEEGRE
>NZ_CP018816.1|WP_001548453.1|4852013_4852235_-|hypothetical-protein
MESSTTRNKVEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAILISNRPGEKGDFEA
>NZ_CP018816.1|WP_004151299.1|4852275_4852509_-|helix-turn-helix-domain-containing-protein
MKNPAVEKAISIAGSQKELAKRCGKAQSTICDWLNGKKRISPVHVPDLVAAVNGEIKAYEFRPDLPSIFPPPNNSAA
>NZ_CP018816.1|WP_004151300.1|4852636_4853326_+|helix-turn-helix-transcriptional-regulator
MDFSERLARAMSLAGYTQGRLAKEVGMAQSSVNKLLNGANGSRKTVEIASVLGVRPEWLSTGAGEMLADSIQITQMQTPVTPQNGIYRVDVLDVKASAGPGALITNDFIETIRAIEYTSEQARSLFGNRPAHHIKVITVTGDSMDTTISPGDEIFVDISSTHFDSDGVYVFVFGKTLHVKRLQMQRDRLAVISDNPIYEKWYVEPGDEDQFYVMARVLLRQSIEYKRFA
>NZ_CP018816.1|WP_004151301.1|4853676_4853892_+|hypothetical-protein
MSKENNGGPAYPTQGYEGLTVRDYFAAKAMQGWLAGYPAGINHPARSEEGFTVAELSYLMADAMLKAREEV
>NZ_CP018816.1|WP_004151302.1|4853888_4853999_+|hypothetical-protein
MSKQGIRSLIYCLLICGVIWSAVVIKILHATGVFNG
>NZ_CP018816.1|WP_004151303.1|4853991_4854186_+|hypothetical-protein
MANSIPNNGRAVMMRNRRTGAAWLVSFDYRDGSYWHEPQGNLRHIRRPYASRSIEPNLVPAGTH
>NZ_CP018816.1|WP_004151304.1|4854274_4854559_+|host-nuclease-inhibitor-GamL
MNAYRAYDVIEERKWAEQTLTEEKQKWIEDRAKEVFDSLPEDPYAALRQSVSSKSFPYEGLRSDKAGEVYNDLRTAIAYAQAEYDWDHRTGCPF
>NZ_CP018816.1|WP_004199604.1|4854574_4855420_+|phage-recombination-protein-Bet
MANELVITASSLAERGIDGATWSALKNSIYPGAKDESVMMALDYCRARNLDPLLKPVHLVPMSVKDSKSGKSEWRDVVMPGIGLYRIQADRSGDYAGAKEPEFGPDVTLTLTGIEVTVPQWCKYTVSKRMPSGEIVEFSAKEYWVENYATSGRDTTAPNAMWKKRPYGQLAKCAEAQALRKAWPEIGQQPTAEEMEGKTLEVDARDVTPRSTPEAPPLVASEETLQAITDLLTSLNKDWEQDFLPLCSNIFKRDIFQASQLTEEEAQKGFSFLQKKAQVAA
>NZ_CP018816.1|WP_004151306.1|4855416_4856097_+|YqaJ-viral-recombinase-family-protein
MTPEIILERTGIDVTRVEQGDESWHRLRLGVITASEVHNVISKPKSGKKWTDMKMSYFLTLLAEVCTGVAPEVNAKALAWGKQYEADARTLFEFTTDVKVTESPILFRDEGMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGKDAWYFANYDPRMKREGIHHVVVERDDKYMSDFNEMVPEFISKMDESLAEIGFTFGEQWK

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Crispr_ID: NZ_CP018816_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018816_2

5324521-5324615

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018816_2

>merge|NZ_CP018816|2|5324521-5324615|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP018816|2|2|5324521-5324615|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018816.1\|WP_002888320.1\|5335164_5335644_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP018816.1\|WP_002888348.1\|5321614_5322274_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP018816.1\|WP_002888324.1\|5332854_5333676_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP018816.1\|WP_004151368.1\|5318695_5321602_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP018816.1\|WP_002888332.1\|5327102_5327930_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP018816.1\|WP_002888340.1\|5324756_5326382_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP018816.1\|WP_002888357.1\|5313639_5315142_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP018816.1\|WP_004147026.1\|5328173_5330522_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP018816.1\|WP_002888327.1\|5331868_5332858_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP018816.1\|WP_002888323.1\|5333678_5334056_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP018816.1\|WP_002888321.1\|5334060_5334909_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP018816.1\|WP_002888353.1\|5315279_5315975_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP018816.1\|WP_004219851.1\|5311567_5311738_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018816.1\|WP_002888370.1\|5310736_5311582_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP018816.1\|WP_002888345.1\|5323067_5324432_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP018816.1\|WP_002888347.1\|5322348_5322888_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP018816.1\|WP_002888329.1\|5330576_5331863_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP018816.1\|WP_002888368.1\|5311919_5313629_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP018816.1\|WP_002888349.1\|5316150_5318508_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP018816.1\|WP_002888337.1\|5326371_5327070_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931

Protein	Function_ID	Function_description	E-value
NZ_CP018816.1\|WP_002888320.1\|5335164_5335644_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP018816.1\|WP_002888348.1\|5321614_5322274_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP018816.1\|WP_002888324.1\|5332854_5333676_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP018816.1\|WP_004151368.1\|5318695_5321602_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP018816.1\|WP_002888332.1\|5327102_5327930_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP018816.1\|WP_002888340.1\|5324756_5326382_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP018816.1\|WP_002888357.1\|5313639_5315142_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP018816.1\|WP_004147026.1\|5328173_5330522_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP018816.1\|WP_002888327.1\|5331868_5332858_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP018816.1\|WP_002888323.1\|5333678_5334056_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP018816.1\|WP_002888321.1\|5334060_5334909_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP018816.1\|WP_002888353.1\|5315279_5315975_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP018816.1\|WP_002888337.1\|5326371_5327070_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP018816.1\|WP_002888345.1\|5323067_5324432_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP018816.1\|WP_002888347.1\|5322348_5322888_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP018816.1\|WP_002888329.1\|5330576_5331863_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP018816.1\|WP_002888368.1\|5311919_5313629_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP018816.1\|WP_002888349.1\|5316150_5318508_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP018816.1\|WP_002888370.1\|5310736_5311582_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0

>NZ_CP018816.1|WP_002888345.1|5323067_5324432_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP018816.1|WP_002888347.1|5322348_5322888_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP018816.1|WP_002888348.1|5321614_5322274_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP018816.1|WP_004151368.1|5318695_5321602_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP018816.1|WP_002888349.1|5316150_5318508_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP018816.1|WP_002888353.1|5315279_5315975_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP018816.1|WP_002888357.1|5313639_5315142_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP018816.1|WP_002888368.1|5311919_5313629_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP018816.1|WP_004219851.1|5311567_5311738_+|hypothetical-protein
MRFGHTRGSPRRYQWHQLSIFIILSLSALSRLRRRWEFGEKPAQQAKKAPAACIPP
>NZ_CP018816.1|WP_002888370.1|5310736_5311582_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP018816.1|WP_002888340.1|5324756_5326382_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP018816.1|WP_002888337.1|5326371_5327070_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP018816.1|WP_002888332.1|5327102_5327930_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP018816.1|WP_004147026.1|5328173_5330522_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP018816.1|WP_002888329.1|5330576_5331863_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP018816.1|WP_002888327.1|5331868_5332858_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP018816.1|WP_002888324.1|5332854_5333676_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP018816.1|WP_002888323.1|5333678_5334056_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP018816.1|WP_002888321.1|5334060_5334909_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP018816.1|WP_002888320.1|5335164_5335644_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP018816_1	1.1\|4851330\|36\|NZ_CP018816\|CRISPRCasFinder	4851330-4851365	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	1.0
NZ_CP018816_1	1.1\|4851330\|36\|NZ_CP018816\|CRISPRCasFinder	4851330-4851365	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	1.0
NZ_CP018816_1	1.1\|4851330\|36\|NZ_CP018816\|CRISPRCasFinder	4851330-4851365	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	1.0

1. spacer 1.1|4851330|36|NZ_CP018816|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

2. spacer 1.1|4851330|36|NZ_CP018816|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

3. spacer 1.1|4851330|36|NZ_CP018816|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

105380 : 111205

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152207.1\|105380_107714_-	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
WP_004152206.1\|107728_108049_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152205.1\|108045_108273_-	hypothetical protein	NA	NA	NA	NA
WP_072093163.1\|108269_108812_-	ash family protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_000556592.1\|108814_109081_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_004152204.1\|109641_110379_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_004152203.1\|110375_110621_+	hypothetical protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004200806.1\|110638_111205_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.8e-58	63.2

DBSCAN-SWA_2

1203396 : 1236654

uncultured_Caudovirales_phage(75.0%)

tRNA,tail,portal,terminase,head,capsid,integrase,protease

attL 1221004:1221021|attR 1236999:1237016

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|1203396_1204344_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|1204358_1204868_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|1204996_1206121_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|1206092_1206566_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|1206591_1207134_+	hypothetical protein	NA	NA	NA	NA
WP_002919132.1\|1207138_1207711_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|1207714_1208533_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|1208529_1208787_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|1208762_1209317_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|1215112_1215334_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|1215627_1218738_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|1218750_1219890_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|1220268_1220919_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
1221004:1221021	attL	NA	NA	NA	NA
WP_004150971.1\|1221194_1222421_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|1222513_1223455_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|1223636_1223921_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|1223931_1224711_+	hypothetical protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_157263200.1\|1225213_1225432_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	1.4e-34	94.4
WP_001549752.1\|1225424_1225613_+	hypothetical protein	NA	NA	NA	NA
WP_004218267.1\|1225689_1225818_-	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|1225916_1226285_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|1226281_1226647_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|1226646_1228782_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|1229124_1229460_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|1229508_1230021_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|1230284_1231451_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|1231502_1232063_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|1232064_1233306_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|1233302_1233638_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|1233634_1233934_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|1233933_1234377_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004150957.1\|1234369_1234522_+	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
WP_000113647.1\|1234652_1235009_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|1234992_1236654_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
1236999:1237016	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1991929 : 2038164

Salmonella_phage(83.72%)

coat,tail,tRNA,portal,lysis,terminase,head,capsid,integrase,plate

attL 1990223:1990269|attR 2026790:2026836

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1990223:1990269	attL	NA	NA	NA	NA
WP_004151020.1\|1991929_1992955_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.5e-190	93.8
WP_004151019.1\|1992957_1993587_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_001397669.1\|1993709_1993952_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151018.1\|1993984_1994494_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_004151017.1\|1994501_1994702_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004144796.1\|1994665_1995004_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151016.1\|1995071_1995305_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004151014.1\|1995304_1995532_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151013.1\|1995528_1996380_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004200605.1\|1996376_1998761_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.8
WP_004151011.1\|1998923_1999112_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004151010.1\|1999123_1999357_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151009.1\|1999452_2000136_-	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|2000122_2001202_-	hypothetical protein	NA	NA	NA	NA
WP_004151007.1\|2001201_2002203_-	hypothetical protein	NA	NA	NA	NA
WP_024940854.1\|2002724_2002994_+	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151006.1\|2003050_2004094_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_019405037.1\|2004093_2005857_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151004.1\|2005997_2006831_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_004151003.1\|2006847_2007900_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004134644.1\|2007903_2008557_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151002.1\|2008652_2009117_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004151001.1\|2009116_2009320_+\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004134639.1\|2009323_2009539_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151000.1\|2009519_2010029_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004150999.1\|2010033_2010417_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004150998.1\|2010413_2010842_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_072093160.1\|2010816_2010975_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	9.0e-15	75.0
WP_004150997.1\|2010937_2011360_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_004150996.1\|2011352_2011799_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150995.1\|2011821_2012688_-	hypothetical protein	NA	NA	NA	NA
WP_004150994.1\|2012782_2013355_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150993.1\|2013351_2013714_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150992.1\|2013700_2014609_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004152935.1\|2014601_2015273_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150990.1\|2015274_2017224_+\|coat	spore coat protein CotH	Q6QI97	Burkholderia_phage	1.0e-06	38.9
WP_004200602.1\|2017233_2018352_+	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150988.1\|2018403_2019477_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004150987.1\|2019625_2020798_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150986.1\|2020807_2021323_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150985.1\|2021375_2021675_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_002896220.1\|2021689_2021809_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_072093161.1\|2022035_2024432_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.1e-107	44.5
WP_004150983.1\|2024428_2024914_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150982.1\|2024910_2026005_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150981.1\|2026071_2026290_+	positive regulator of late gene transcription	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150980.1\|2026317_2026695_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|2027298_2027781_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
2026790:2026836	attR	NA	NA	NA	NA
WP_004188817.1\|2027891_2028368_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914161.1\|2028357_2028648_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|2028714_2029056_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_004145681.1\|2029037_2029178_-	hypothetical protein	NA	NA	NA	NA
WP_002914159.1\|2029203_2030865_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|2030951_2031830_-	NAD(+) kinase	NA	NA	NA	NA
WP_002914155.1\|2031954_2032545_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004149392.1\|2032664_2033951_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|2033970_2034762_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|2034925_2036290_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|2036549_2036798_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|2036816_2037365_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|2037396_2038164_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_4

2142880 : 2208964

Salmonella_phage(37.04%)

transposase,tail,holin,terminase,head,integrase,protease

attL 2143875:2143892|attR 2211712:2211729

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151980.1\|2142880_2144347_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
2143875:2143892	attL	NA	NA	NA	NA
WP_004151979.1\|2144414_2145992_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_004200581.1\|2146184_2147435_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	6.8e-206	85.1
WP_004200579.1\|2147451_2147643_-	hypothetical protein	NA	NA	NA	NA
WP_004200578.1\|2147639_2148236_-	adenine methylase	T1SA14	Salmonella_phage	1.4e-108	92.8
WP_071606115.1\|2148232_2148739_-	hypothetical protein	NA	NA	NA	NA
WP_004152545.1\|2148735_2148894_-	DUF1317 family protein	T1SAR0	Salmonella_phage	1.9e-17	78.8
WP_009485475.1\|2148886_2149180_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	4.0e-32	71.1
WP_004144294.1\|2149289_2149538_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	2.8e-31	78.0
WP_004200576.1\|2149586_2150468_-	recombinase RecT	T1SBJ5	Salmonella_phage	3.5e-132	82.6
WP_004200574.1\|2150464_2151286_-	exonuclease VIII/RecE-like protein	A0A193GYK2	Enterobacter_phage	2.3e-133	82.1
WP_004164029.1\|2151282_2151582_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_004200573.1\|2151956_2152538_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	1.2e-64	64.3
WP_004152538.1\|2152692_2152926_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004200566.1\|2153272_2154247_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	2.3e-140	65.8
WP_004200565.1\|2154236_2155007_+	hypothetical protein	G9L6A8	Escherichia_phage	5.5e-57	91.7
WP_004200564.1\|2155132_2155480_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	8.6e-50	81.7
WP_004200563.1\|2155672_2156059_+	hypothetical protein	R9TME7	Aeromonas_phage	6.7e-11	44.0
WP_004200562.1\|2156042_2156234_+	hypothetical protein	NA	NA	NA	NA
WP_004200561.1\|2156230_2156494_+	DUF4752 family protein	T1S9K2	Salmonella_phage	2.0e-27	72.0
WP_004200559.1\|2156956_2157337_+	HNH endonuclease	K7P7B7	Enterobacteria_phage	5.7e-63	92.8
WP_004200558.1\|2157333_2157612_+	hypothetical protein	NA	NA	NA	NA
WP_004200557.1\|2157608_2158103_+	DUF551 domain-containing protein	A0A193GYX5	Enterobacter_phage	2.2e-27	39.4
WP_004200556.1\|2158095_2158335_+	hypothetical protein	G8C7S3	Escherichia_phage	2.3e-09	53.4
WP_004200555.1\|2158334_2158673_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	4.1e-49	87.3
WP_004178082.1\|2159093_2160581_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_017896964.1\|2160659_2160989_+	hypothetical protein	K7PGV5	Enterobacterial_phage	3.0e-28	56.1
WP_017896965.1\|2161046_2161667_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	9.5e-76	73.2
WP_004200551.1\|2161663_2163139_+	hypothetical protein	Q858H3	Salmonella_phage	4.9e-280	92.9
WP_004200550.1\|2163182_2163554_-	hypothetical protein	A0A0F6TJP2	Escherichia_coli_O157_typing_phage	3.7e-59	91.9
WP_004141368.1\|2164307_2164514_+	hypothetical protein	T1SA67	Salmonella_phage	4.8e-08	88.2
WP_004200549.1\|2164528_2166211_+\|head,tail	head-to-tail-joining protein	A0A0F6TJD8	Escherichia_coli_O157_typing_phage	9.6e-264	84.4
WP_004200548.1\|2166207_2166504_+	hypothetical protein	T1SBI9	Salmonella_phage	9.6e-34	70.4
WP_004200547.1\|2166506_2167190_+\|protease	endoprotease	G9L6C4	Escherichia_phage	7.3e-61	71.6
WP_004200546.1\|2167204_2168191_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	2.5e-179	94.2
WP_004200545.1\|2168244_2168682_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	8.8e-68	93.1
WP_004200544.1\|2168692_2169034_+	hypothetical protein	G9L6C7	Escherichia_phage	3.1e-36	70.8
WP_004200543.1\|2169084_2169408_+	hypothetical protein	G9L6C8	Escherichia_phage	1.2e-45	84.1
WP_004200541.1\|2169407_2170013_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	5.1e-90	79.5
WP_004200540.1\|2170012_2172490_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.2
WP_004200538.1\|2172489_2172954_+	hypothetical protein	Q858G2	Salmonella_phage	1.3e-69	81.0
WP_004200537.1\|2172953_2173493_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	2.4e-59	70.9
WP_004200536.1\|2173503_2176317_+	hypothetical protein	T1SBJ1	Salmonella_phage	0.0e+00	92.5
WP_004200535.1\|2176313_2178119_+	hypothetical protein	A0A0F6TJQ3	Escherichia_coli_O157_typing_phage	3.3e-238	73.5
WP_004200534.1\|2178122_2180597_+	phage protein	A0A0F6TK45	Escherichia_coli_O157_typing_phage	0.0e+00	86.9
WP_004200533.1\|2180795_2181092_+	hypothetical protein	A0A2R9YJP3	Escherichia_phage	4.4e-47	94.8
WP_071606113.1\|2181126_2181279_-	transmembrane anchored protein	G9L6D9	Escherichia_phage	4.3e-14	81.6
WP_004200532.1\|2181377_2181674_-	hypothetical protein	T1SA06	Salmonella_phage	2.4e-24	65.1
WP_004200531.1\|2181830_2184125_+	hypothetical protein	T1S9Y2	Salmonella_phage	5.8e-78	55.5
WP_004200530.1\|2184134_2184362_+	hypothetical protein	NA	NA	NA	NA
WP_004200529.1\|2184539_2184944_+	integral membrane protein	T1SA79	Salmonella_phage	3.5e-55	82.6
WP_004200528.1\|2184930_2185224_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.4e-37	82.7
WP_004200527.1\|2185225_2185855_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	8.4e-96	79.7
WP_004200526.1\|2185851_2186334_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	1.7e-56	75.6
WP_004152009.1\|2186553_2188422_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6
WP_004162150.1\|2188405_2189584_-	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_002913847.1\|2189877_2191110_-	MFS transporter	NA	NA	NA	NA
WP_004221278.1\|2191183_2192095_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004174861.1\|2192191_2192365_-	DUF2633 family protein	G9L6F2	Escherichia_phage	1.4e-16	78.8
WP_002913841.1\|2192735_2194964_+	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
WP_002913839.1\|2195017_2196550_-	exopolyphosphatase	NA	NA	NA	NA
WP_002913838.1\|2196553_2198614_-	polyphosphate kinase 1	NA	NA	NA	NA
WP_004152007.1\|2198794_2199436_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.2e-28	41.1
WP_002913836.1\|2199432_2200470_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.2e-72	44.5
WP_002913833.1\|2200733_2201627_+	ROK family protein	NA	NA	NA	NA
WP_002913829.1\|2201636_2203070_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_002913827.1\|2203287_2203914_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_002913824.1\|2204009_2205296_+	uracil permease	Q9KX94	Enterobacteria_phage	1.9e-65	38.1
WP_020947395.1\|2205394_2206096_+	DnaA inactivator Hda	NA	NA	NA	NA
WP_002913812.1\|2206092_2207004_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.5e-74	58.8
WP_002913810.1\|2207131_2207491_-	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
WP_002913807.1\|2207500_2208964_-\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA
2211712:2211729	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2552097 : 2570779

Shigella_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004200433.1\|2552097_2552739_+	uridine kinase	A0A1V0SAA3	Catovirus	3.8e-35	37.9
WP_004103714.1\|2552829_2553411_+	dCTP deaminase	I4AZP2	Saccharomonospora_phage	3.9e-31	42.1
WP_004200430.1\|2553438_2555286_+	outer membrane assembly protein AsmA	NA	NA	NA	NA
WP_004200428.1\|2555586_2557173_-	TerC family protein	A0A0R6PEZ3	Moraxella_phage	1.7e-36	43.5
WP_077264888.1\|2557554_2557731_+\|transposase	transposase	Q76S41	Shigella_phage	1.0e-06	65.9
WP_102003640.1\|2557701_2558899_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.2e-145	81.1
WP_004201210.1\|2558955_2559396_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.7e-18	59.0
WP_004189161.1\|2559392_2559743_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8
WP_038434044.1\|2559773_2561366_+\|transposase	IS66-like element ISKox1 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.2e-176	61.8
WP_004200391.1\|2561705_2562710_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	5.2e-31	28.6
WP_004200392.1\|2563176_2563299_+	small membrane protein	NA	NA	NA	NA
WP_004103677.1\|2563856_2565023_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	1.8e-112	54.2
WP_023321278.1\|2565185_2566556_-	phosphomannomutase CpsG	A0A127AWJ1	Bacillus_phage	4.2e-31	26.5
WP_025403909.1\|2566578_2567994_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	2.8e-54	29.9
WP_156529680.1\|2568292_2568556_-	hypothetical protein	NA	NA	NA	NA
WP_102003640.1\|2568737_2569935_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.2e-145	81.1
WP_004201210.1\|2569991_2570432_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.7e-18	59.0
WP_004189161.1\|2570428_2570779_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	5.2e-39	63.8

DBSCAN-SWA_6

3537801 : 3547215

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_160463746.1\|3537801_3539436_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	3.1e-182	55.8
WP_004151612.1\|3539490_3540756_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|3540786_3541875_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|3541961_3542222_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|3542519_3543380_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|3543400_3544162_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_004151610.1\|3544422_3545325_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
WP_004151609.1\|3545336_3546602_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
WP_002210516.1\|3546594_3547215_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_7

3772145 : 3813887

Klebsiella_phage(34.04%)

integrase,terminase

attL 3805000:3805014|attR 3811009:3811023

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014343022.1\|3772145_3775169_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.6e-22	44.7
WP_004152577.1\|3775224_3775422_-	hypothetical protein	NA	NA	NA	NA
WP_004231602.1\|3775396_3775528_-	hypothetical protein	NA	NA	NA	NA
WP_004231600.1\|3775648_3775813_-	hypothetical protein	NA	NA	NA	NA
WP_004152575.1\|3776287_3777061_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152574.1\|3777057_3778254_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152573.1\|3778253_3778607_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152572.1\|3778608_3779262_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004225248.1\|3779315_3779666_-	hypothetical protein	NA	NA	NA	NA
WP_004173705.1\|3779918_3780104_+	hypothetical protein	NA	NA	NA	NA
WP_004152570.1\|3780156_3780498_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004152569.1\|3780497_3781520_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004217362.1\|3781522_3781750_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	4.6e-20	56.0
WP_004225238.1\|3781825_3782239_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	8.1e-31	55.9
WP_004152566.1\|3782424_3784428_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152565.1\|3784417_3784570_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152564.1\|3784605_3785031_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_004199809.1\|3785034_3785475_-	DUF3277 family protein	A0A0M5M1K6	Salmonella_phage	3.3e-62	80.1
WP_004152177.1\|3785485_3786631_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152176.1\|3786634_3787075_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_001116156.1\|3787169_3787556_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_000834982.1\|3787555_3788062_-	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|3788058_3788478_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000725700.1\|3788446_3788728_-	hypothetical protein	NA	NA	NA	NA
WP_001132269.1\|3788767_3789709_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000528476.1\|3789720_3790215_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_004199270.1\|3790218_3791421_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
WP_004152174.1\|3791472_3792021_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004152173.1\|3792076_3793528_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152172.1\|3793765_3795166_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004218030.1\|3795116_3795605_-	hypothetical protein	NA	NA	NA	NA
WP_004152170.1\|3795970_3796291_-	hypothetical protein	NA	NA	NA	NA
WP_004153952.1\|3796525_3796915_-	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152169.1\|3796911_3797442_-	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004146526.1\|3797444_3797693_-	hypothetical protein	NA	NA	NA	NA
WP_004218026.1\|3797710_3797839_+	hypothetical protein	NA	NA	NA	NA
WP_004152168.1\|3797876_3798032_-	hypothetical protein	NA	NA	NA	NA
WP_004152167.1\|3798098_3798881_-	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004198239.1\|3798877_3799354_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004218023.1\|3799350_3800328_-	DNA primase	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198228.1\|3800314_3801973_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004152162.1\|3802549_3802771_-	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152161.1\|3802868_3803537_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152160.1\|3803707_3804022_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152159.1\|3804014_3804203_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004218017.1\|3804576_3804738_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	1.5e-20	96.2
WP_004152157.1\|3804730_3804985_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
3805000:3805014	attL	NA	NA	NA	NA
WP_004146412.1\|3805052_3805175_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	1.3e-16	100.0
WP_004152156.1\|3805171_3805597_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152155.1\|3805593_3805788_+	hypothetical protein	NA	NA	NA	NA
WP_004152154.1\|3805784_3806612_+	hypothetical protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
WP_004152153.1\|3806716_3807235_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
WP_004154298.1\|3807240_3807951_+	DNA-binding protein	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152151.1\|3807940_3808165_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004218013.1\|3808260_3808374_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	4.6e-13	100.0
WP_014343018.1\|3808616_3808850_+	hypothetical protein	NA	NA	NA	NA
WP_004198245.1\|3808922_3809069_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
WP_004152148.1\|3809028_3809271_+	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152147.1\|3809251_3810433_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_016197745.1\|3810629_3811178_+	DJ-1/PfpI family protein	NA	NA	NA	NA
3811009:3811023	attR	NA	NA	NA	NA
WP_004152145.1\|3811376_3812909_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_004152144.1\|3813125_3813887_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5

DBSCAN-SWA_8

3846820 : 3855390

Salmonella_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002901815.1\|3846820_3847492_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
WP_071531199.1\|3847678_3848506_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901813.1\|3848581_3849847_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_002901812.1\|3849848_3850268_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_004178082.1\|3850347_3851835_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_004152776.1\|3852729_3853152_-	hypothetical protein	K7P834	Enterobacteria_phage	3.6e-26	45.3
WP_001067855.1\|3853744_3854449_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001389365.1\|3854625_3855390_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7

DBSCAN-SWA_9

3858884 : 3872597

Enterobacteria_phage(43.75%)

integrase,transposase

attL 3860248:3860262|attR 3872360:3872374

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|3858884_3859589_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004201118.1\|3859685_3860534_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
3860248:3860262	attL	NA	NA	NA	NA
WP_004201117.1\|3860530_3861391_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_001548453.1\|3861476_3861698_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201115.1\|3861738_3861966_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004201113.1\|3862077_3862776_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_004201109.1\|3863063_3864140_+	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_004201108.1\|3864221_3864425_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_004219883.1\|3864735_3864861_+	hypothetical protein	NA	NA	NA	NA
WP_004135674.1\|3864853_3865048_+	hypothetical protein	NA	NA	NA	NA
WP_004201105.1\|3865136_3865421_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004201103.1\|3865436_3866282_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_088224434.1\|3866278_3866566_+	hypothetical protein	NA	NA	NA	NA
WP_004201102.1\|3866567_3867248_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004151898.1\|3867244_3867673_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004151899.1\|3867669_3868332_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004151900.1\|3868539_3869757_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	8.6e-121	51.9
WP_004151901.1\|3869903_3870794_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004140266.1\|3870793_3871786_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|3871787_3872597_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
3872360:3872374	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4277778 : 4370729

Salmonella_phage(57.63%)

tail,tRNA,lysis,portal,terminase,head,capsid,integrase,protease,plate

attL 4333304:4333322|attR 4370804:4370822

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|4277778_4279071_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|4279161_4280505_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|4280513_4281125_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004150846.1\|4281247_4285501_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|4285636_4286131_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_004147787.1\|4286414_4286546_-	hypothetical protein	NA	NA	NA	NA
WP_002898019.1\|4286663_4287632_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
WP_002898017.1\|4287746_4289513_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|4289513_4291235_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_004141853.1\|4291261_4291981_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|4292334_4292553_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|4292673_4294953_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|4294983_4295301_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|4295626_4295848_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|4295924_4297865_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|4297861_4298977_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|4299123_4300782_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|4301201_4301897_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|4302012_4302912_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_002896412.1\|4303055_4304708_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|4304718_4305687_+	NADH oxidoreductase	NA	NA	NA	NA
WP_002896408.1\|4305898_4306333_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|4306484_4308203_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|4308241_4309243_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|4309253_4310696_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|4310783_4311797_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|4311793_4312624_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|4312655_4313795_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_002896394.1\|4314672_4315188_+	lipoprotein	NA	NA	NA	NA
WP_002896392.1\|4315414_4316143_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|4316163_4316895_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|4316901_4317618_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004150852.1\|4317617_4318286_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|4318469_4319201_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|4319243_4320716_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|4320712_4321429_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|4321507_4322635_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|4322676_4323165_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|4323222_4324068_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|4324064_4325018_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_004176719.1\|4325028_4326195_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.3e-30	34.9
WP_002896368.1\|4326325_4327438_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|4327786_4328266_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|4328354_4329257_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|4330078_4330366_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|4330568_4330832_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|4330838_4331222_-	membrane protein	NA	NA	NA	NA
WP_004179131.1\|4331488_4333174_+	aspartate:alanine antiporter	NA	NA	NA	NA
WP_004226292.1\|4333165_4333288_-	hypothetical protein	NA	NA	NA	NA
4333304:4333322	attL	NA	NA	NA	NA
WP_000972391.1\|4333393_4333612_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|4333703_4334804_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_002896224.1\|4334800_4335286_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	7.2e-63	75.6
WP_014342962.1\|4335282_4337676_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	1.1e-106	44.0
WP_002896220.1\|4337902_4338022_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|4338036_4338336_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|4338388_4338904_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|4338913_4340086_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|4340224_4341301_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_004232615.1\|4341330_4341492_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|4341530_4342262_-	hypothetical protein	NA	NA	NA	NA
WP_004152882.1\|4342265_4345217_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
WP_004150856.1\|4345218_4345818_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|4345810_4346719_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_002896179.1\|4346705_4347068_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
WP_002896177.1\|4347064_4347637_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_004226282.1\|4347751_4347916_-	hypothetical protein	NA	NA	NA	NA
WP_004199112.1\|4347914_4348424_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|4348420_4348867_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|4348859_4349291_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896170.1\|4349253_4349400_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	6.0e-13	76.1
WP_002896168.1\|4349386_4349815_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|4349811_4350195_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|4350199_4350709_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|4350689_4350905_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|4350908_4351112_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896151.1\|4351111_4351576_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_000059191.1\|4351671_4352322_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|4352325_4353384_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|4353400_4354234_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|4354376_4356143_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|4356142_4357168_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004199124.1\|4357229_4358972_-	AIPR family protein	NA	NA	NA	NA
WP_000700647.1\|4359247_4359925_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|4360039_4360273_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|4360283_4360472_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004150862.1\|4360625_4363040_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_004150863.1\|4363036_4363894_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_000752622.1\|4363890_4364118_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150864.1\|4364117_4364351_-	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_004199692.1\|4364418_4364760_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
WP_000956179.1\|4364723_4364924_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|4364931_4365441_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|4365473_4365695_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|4365840_4366719_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_004150866.1\|4366730_4367675_+	hypothetical protein	NA	NA	NA	NA
WP_004178082.1\|4367773_4369261_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_014342959.1\|4369748_4370729_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-97	57.2
4370804:4370822	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4817145 : 4862420

Escherichia_phage(26.42%)

head,lysis,tRNA,integrase

attL 4810358:4810404|attR 4859492:4859538

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4810358:4810404	attL	NA	NA	NA	NA
WP_004151249.1\|4817145_4819623_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	2.7e-198	45.6
WP_004151250.1\|4819609_4820005_-	hypothetical protein	F1C5F2	Cronobacter_phage	8.0e-36	54.0
WP_004199076.1\|4820001_4820472_-	hypothetical protein	R9TPR6	Aeromonas_phage	2.5e-28	41.0
WP_004151252.1\|4820471_4820948_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.7
WP_004199612.1\|4820990_4824437_-	tape measure protein	Q5G8W8	Enterobacteria_phage	1.0e-163	48.6
WP_004151254.1\|4824529_4825033_-	hypothetical protein	NA	NA	NA	NA
WP_004151255.1\|4825160_4825946_-	phage repressor protein	A0A2L1IV39	Escherichia_phage	1.9e-84	59.7
WP_004151256.1\|4826011_4826725_-	hypothetical protein	H6WRU8	Salmonella_phage	3.9e-49	50.2
WP_004151257.1\|4826714_4826885_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	6.1e-17	87.0
WP_004151258.1\|4826984_4827344_+	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.8e-16	47.5
WP_004151259.1\|4827360_4827831_-	hypothetical protein	NA	NA	NA	NA
WP_004151260.1\|4828124_4828379_-	hypothetical protein	K7PM89	Enterobacteria_phage	6.7e-20	73.0
WP_004151261.1\|4828381_4829137_-	DNA-binding protein	K7PGT4	Enterobacteria_phage	2.4e-60	51.0
WP_004151262.1\|4829312_4829990_-	hypothetical protein	F1C5E8	Cronobacter_phage	4.8e-73	57.9
WP_004151263.1\|4830042_4830795_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	5.8e-43	42.1
WP_004151264.1\|4830863_4831256_-	hypothetical protein	G0ZNE4	Cronobacter_phage	5.1e-35	52.7
WP_004151265.1\|4831252_4831678_-	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_004151266.1\|4831680_4832043_-	hypothetical protein	A0A173GCE0	Salmonella_phage	1.8e-18	45.0
WP_004151267.1\|4832042_4832216_-	hypothetical protein	I6R0P9	Salmonella_phage	1.4e-13	56.1
WP_004151268.1\|4832215_4832596_-	hypothetical protein	F1C5E2	Cronobacter_phage	5.3e-29	55.3
WP_004151269.1\|4832598_4832838_-	hypothetical protein	NA	NA	NA	NA
WP_004151270.1\|4832848_4833943_-	hypothetical protein	F1C5E1	Cronobacter_phage	1.7e-123	62.8
WP_004151271.1\|4833954_4834383_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.6e-42	60.8
WP_004151272.1\|4834386_4835772_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.3e-154	60.0
WP_004151273.1\|4835844_4836321_-	hypothetical protein	NA	NA	NA	NA
WP_004151274.1\|4836362_4837367_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	9.0e-116	69.7
WP_004151275.1\|4837341_4838763_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.6e-148	57.1
WP_004151276.1\|4838775_4840248_-	hypothetical protein	A0A1W6JNY3	Morganella_phage	1.3e-248	82.5
WP_004151277.1\|4840247_4840850_-	hypothetical protein	G8C7P2	Escherichia_phage	5.4e-76	80.9
WP_004151279.1\|4841220_4841550_+	hypothetical protein	NA	NA	NA	NA
WP_004151280.1\|4841655_4842120_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	2.4e-55	73.2
WP_004151281.1\|4842116_4842647_-	lysozyme	G9L6J6	Escherichia_phage	6.0e-79	78.5
WP_004151282.1\|4842649_4842898_-	hypothetical protein	NA	NA	NA	NA
WP_004151283.1\|4843807_4844497_-	antitermination protein	I6PDF8	Cronobacter_phage	1.4e-56	54.5
WP_004151284.1\|4844493_4845024_-	HNH endonuclease	A0A193GYW9	Enterobacter_phage	5.2e-30	43.1
WP_004151285.1\|4845016_4845154_-	YlcG family protein	NA	NA	NA	NA
WP_004151286.1\|4845150_4845786_-	protein ninG	M9NYX8	Enterobacteria_phage	2.7e-81	77.9
WP_004151287.1\|4845778_4845949_-	NinE family protein	G8C7V4	Escherichia_phage	1.3e-14	73.2
WP_004151288.1\|4845948_4846404_-	hypothetical protein	K7P7B8	Enterobacteria_phage	8.0e-56	69.5
WP_004151291.1\|4846904_4847552_-	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	4.5e-12	32.6
WP_004151293.1\|4847724_4848567_-	translation repressor RelE	A0A2H4FRZ0	Salmonella_phage	1.8e-29	60.8
WP_004151294.1\|4848673_4849180_-	hypothetical protein	A0A0A6Z565	Enterobacter_phage	3.0e-27	59.6
WP_004151295.1\|4849176_4849470_-	protein ren	O48423	Enterobacteria_phage	3.3e-26	65.6
WP_004230547.1\|4849469_4850885_-	AAA family ATPase	Q9MCT4	Escherichia_phage	1.8e-183	67.1
WP_004230546.1\|4850889_4851741_-	hypothetical protein	F1C5C3	Cronobacter_phage	5.3e-85	56.3
WP_004151298.1\|4851781_4851928_-	hypothetical protein	NA	NA	NA	NA
WP_001548453.1\|4852013_4852235_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004151299.1\|4852275_4852509_-	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	4.3e-13	50.7
WP_004151300.1\|4852636_4853326_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	4.3e-61	52.2
WP_004151301.1\|4853676_4853892_+	hypothetical protein	B5WZV1	Pseudomonas_phage	1.6e-09	48.6
WP_004151302.1\|4853888_4853999_+	hypothetical protein	NA	NA	NA	NA
WP_004151303.1\|4853991_4854186_+	hypothetical protein	NA	NA	NA	NA
WP_004151304.1\|4854274_4854559_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.0e-30	62.8
WP_004199604.1\|4854574_4855420_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	5.3e-69	59.2
WP_004151306.1\|4855416_4856097_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	7.9e-124	93.4
WP_004151308.1\|4856093_4856252_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
WP_004151310.1\|4856248_4856905_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-113	87.5
WP_004151312.1\|4856901_4857669_+	hypothetical protein	D5LH17	Escherichia_phage	1.7e-66	53.4
WP_004151314.1\|4857665_4857884_+	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.2e-09	47.2
WP_004151316.1\|4857885_4858101_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	4.0e-13	52.9
WP_004151317.1\|4858102_4858438_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_004151318.1\|4858314_4859478_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	3.3e-202	87.3
WP_004143017.1\|4859908_4860775_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
4859492:4859538	attR	NA	NA	NA	NA
WP_004143016.1\|4860776_4860989_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|4861034_4862420_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP018819

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP018818

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP018816

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection