Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP017810 Thalassolituus oleivorans strain K188 chromosome, complete genome 9 crisprs cas3,csa3,DEDDh,RT,WYL,DinG,PD-DExK 1 2 5 0

Results visualization

1. NZ_CP017810
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017810_1 1195798-1195952 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017810_2 1197599-1197917 Orphan NA
4 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017810_3 1228800-1228890 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017810_4 1242565-1242700 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017810_5 1872154-1872232 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017810_6 2439936-2440085 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017810_7 2589309-2589410 Unclear NA
1 spacers
DEDDh

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017810_8 3068074-3068227 Orphan NA
2 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP017810_9 3792724-3792822 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP017810.1 734749-734775 0 1.0
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP017810.1 3748511-3748537 0 1.0
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP017810.1 645614-645640 1 0.963
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP017810.1 1873386-1873412 1 0.963
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP017810.1 1885526-1885552 1 0.963
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP017810.1 1517689-1517715 2 0.926

1. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to position: 734749-734775, mismatch: 0, identity: 1.0

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ccatttgcttcaaaaaataattctttt	Protospacer
***************************

2. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to position: 3748511-3748537, mismatch: 0, identity: 1.0

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ccatttgcttcaaaaaataattctttt	Protospacer
***************************

3. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to position: 645614-645640, mismatch: 1, identity: 0.963

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ccatttgcttcaagaaataattctttt	Protospacer
*************.*************

4. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to position: 1873386-1873412, mismatch: 1, identity: 0.963

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ccatttgcttcaagaaataattctttt	Protospacer
*************.*************

5. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to position: 1885526-1885552, mismatch: 1, identity: 0.963

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ccatttgcttcaagaaataattctttt	Protospacer
*************.*************

6. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to position: 1517689-1517715, mismatch: 2, identity: 0.926

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ccatttggttcaaaaaataatcctttt	Protospacer
******* *************.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP047377 Aeromonas salmonicida subsp. salmonicida strain J410 plasmid p1AsJ410, complete sequence 32778-32804 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP048224 Aeromonas salmonicida subsp. salmonicida strain J223 plasmid pASal5, complete sequence 2271-2297 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP048224 Aeromonas salmonicida subsp. salmonicida strain J223 plasmid pASal5, complete sequence 160042-160068 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP022183 Aeromonas salmonicida strain S68 plasmid pS68-2, complete sequence 23751-23777 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NC_009350 Aeromonas salmonicida subsp. salmonicida A449 plasmid 5, complete sequence 84268-84294 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP038103 Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 plasmid pAsa5-3432, complete sequence 86870-86896 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP017145 Aeromonas salmonicida subsp. masoucida strain RFAS1 plasmid unnamed2, complete sequence 44655-44681 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP022178 Aeromonas salmonicida strain S44 plasmid pS44-3, complete sequence 39542-39568 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP022172 Aeromonas salmonicida strain S121 plasmid pS121-3, complete sequence 25060-25086 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP047375 Aeromonas salmonicida subsp. salmonicida strain J409 plasmid p1AsJ409, complete sequence 45311-45337 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_KY555069 Aeromonas salmonicida subsp. salmonicida strain 01-B526 plasmid pAsa5, complete sequence 86900-86926 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 CP052035 Aeromonas salmonicida subsp. salmonicida strain J411 plasmid p1AsJ411, complete sequence 20375-20401 4 0.852
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NZ_CP053834 Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence 120764-120790 5 0.815
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NC_015418 Clostridium botulinum BKT015925 plasmid p3BKT015925, complete sequence 73548-73574 5 0.815
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NC_014633 Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence 755440-755466 6 0.778
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 KY290975 Escherichia phage YUEEL01, complete genome 145320-145346 6 0.778
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 LT960552 Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite 48183-48209 6 0.778
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 LR596615 Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I 46353-46379 6 0.778
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NC_042116 Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite 46353-46379 6 0.778
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 NC_014660 Acinetobacter phage Ac42, complete genome 84760-84786 6 0.778
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 KF669662 Bacillus phage Spock, complete genome 31188-31214 7 0.741
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 KY888882 Bacillus phage Flapjack, complete genome 30993-31019 7 0.741
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 AP014503 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S42-C30, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces 22558-22584 7 0.741
NZ_CP017810_5 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder 1872180-1872206 27 MF360958 Salicola phage SCTP-2, complete genome 39485-39511 7 0.741
NZ_CP017810_7 7.1|2589345|30|NZ_CP017810|CRISPRCasFinder 2589345-2589374 30 NZ_CP025513 Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence 879497-879526 8 0.733
NZ_CP017810_7 7.1|2589345|30|NZ_CP017810|CRISPRCasFinder 2589345-2589374 30 KR093641 Moraxella phage Mcat17, complete genome 40396-40425 9 0.7

1. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NZ_CP047377 (Aeromonas salmonicida subsp. salmonicida strain J410 plasmid p1AsJ410, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

2. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NZ_CP048224 (Aeromonas salmonicida subsp. salmonicida strain J223 plasmid pASal5, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

3. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NZ_CP048224 (Aeromonas salmonicida subsp. salmonicida strain J223 plasmid pASal5, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

4. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NZ_CP022183 (Aeromonas salmonicida strain S68 plasmid pS68-2, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

5. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NC_009350 (Aeromonas salmonicida subsp. salmonicida A449 plasmid 5, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

6. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NZ_CP038103 (Aeromonas salmonicida subsp. salmonicida strain SHY16-3432 plasmid pAsa5-3432, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

7. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NZ_CP017145 (Aeromonas salmonicida subsp. masoucida strain RFAS1 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

8. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NZ_CP022178 (Aeromonas salmonicida strain S44 plasmid pS44-3, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

9. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NZ_CP022172 (Aeromonas salmonicida strain S121 plasmid pS121-3, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

10. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NZ_CP047375 (Aeromonas salmonicida subsp. salmonicida strain J409 plasmid p1AsJ409, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

11. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NZ_KY555069 (Aeromonas salmonicida subsp. salmonicida strain 01-B526 plasmid pAsa5, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

12. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to CP052035 (Aeromonas salmonicida subsp. salmonicida strain J411 plasmid p1AsJ411, complete sequence) position: , mismatch: 4, identity: 0.852

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ctatttgcttcaaaaaataattttgat	Protospacer
*.********************.*  *

13. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NZ_CP053834 (Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence) position: , mismatch: 5, identity: 0.815

ccatttgcttcaaaaaataattctttt	CRISPR spacer
tgatttgcttcaaaaagtaatgcttct	Protospacer
. **************.**** ***.*

14. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NC_015418 (Clostridium botulinum BKT015925 plasmid p3BKT015925, complete sequence) position: , mismatch: 5, identity: 0.815

ccatttgcttcaaaaaataattctttt	CRISPR spacer
acatttgcttcaaataataattttcta	Protospacer
 ************* *******.*.* 

15. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NC_014633 (Ilyobacter polytropus DSM 2926 plasmid pILYOP01, complete sequence) position: , mismatch: 6, identity: 0.778

ccatttgcttcaaaaaataattctttt	CRISPR spacer
attcttgcttcaaaaaatacttttttt	Protospacer
 . .*************** **.****

16. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to KY290975 (Escherichia phage YUEEL01, complete genome) position: , mismatch: 6, identity: 0.778

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ttattagcatcaaaaaataattcttca	Protospacer
..*** ** ****************. 

17. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 6, identity: 0.778

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ccagttgcttcaaaaattaattcccca	Protospacer
*** ************ ******... 

18. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 6, identity: 0.778

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ccagttgcttcaaaaattaattcccca	Protospacer
*** ************ ******... 

19. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 6, identity: 0.778

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ccagttgcttcaaaaattaattcccca	Protospacer
*** ************ ******... 

20. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to NC_014660 (Acinetobacter phage Ac42, complete genome) position: , mismatch: 6, identity: 0.778

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ggttttacttcaaaaaagaattctttg	Protospacer
   ***.********** ******** 

21. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to KF669662 (Bacillus phage Spock, complete genome) position: , mismatch: 7, identity: 0.741

ccatttgcttcaaaaaataattctttt	CRISPR spacer
agatttgcttcaaaaaataattaggga	Protospacer
  ********************     

22. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to KY888882 (Bacillus phage Flapjack, complete genome) position: , mismatch: 7, identity: 0.741

ccatttgcttcaaaaaataattctttt	CRISPR spacer
agatttgcttcaaaaaataattaggga	Protospacer
  ********************     

23. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to AP014503 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S42-C30, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces) position: , mismatch: 7, identity: 0.741

ccatttgcttcaaaaaataattctttt	CRISPR spacer
gtgggtgcttcaaaaaatagttctttg	Protospacer
 ..  **************.****** 

24. spacer 5.1|1872180|27|NZ_CP017810|CRISPRCasFinder matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 7, identity: 0.741

ccatttgcttcaaaaaataattctttt	CRISPR spacer
ttagagttttcaaaaaataattctttt	Protospacer
..*    .*******************

25. spacer 7.1|2589345|30|NZ_CP017810|CRISPRCasFinder matches to NZ_CP025513 (Neorhizobium sp. SOG26 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

aatgggaatgcatcagaattatcgccttta	CRISPR spacer
tatggtaatgcatcagaaatatcggatagc	Protospacer
 **** ************ *****  *   

26. spacer 7.1|2589345|30|NZ_CP017810|CRISPRCasFinder matches to KR093641 (Moraxella phage Mcat17, complete genome) position: , mismatch: 9, identity: 0.7

aatgggaatgcatcagaattatcgccttta	CRISPR spacer
tctgggaactcatcagaattatcgctgacg	Protospacer
  ******. ***************.  ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 472508 : 566375 59 Diadromus_pulchellus_ascovirus(12.5%) transposase,protease,tRNA,plate NA
DBSCAN-SWA_2 1595350 : 1606251 10 Tupanvirus(33.33%) transposase,tRNA NA
DBSCAN-SWA_3 1714320 : 1734253 21 Leptospira_phage(40.0%) transposase,tail,plate,integrase attL 1708408:1708423|attR 1741086:1741101
DBSCAN-SWA_4 2679875 : 2734100 47 Bacillus_phage(33.33%) transposase,protease NA
DBSCAN-SWA_5 3752598 : 3831258 60 Leptospira_phage(20.0%) transposase,tail,integrase attL 3748344:3748393|attR 3804607:3804656
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage