CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP018871	Acinetobacter haemolyticus strain TJS01 chromosome, complete genome	1 crisprs	cas3,csa3,DEDDh,WYL	9
NZ_CP018873	Acinetobacter haemolyticus strain TJS01 plasmid pAHTJS2, complete sequence	0 crisprs	NA	0
NZ_CP018872	Acinetobacter haemolyticus strain TJS01 plasmid pAHTJS1, complete sequence	0 crisprs	WYL	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP018871_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP018871_1

2101357-2101442

Orphan

Consensus_repeat	Method
CTTTCAGATCAGCAATTTCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP018871_1

>merge|NZ_CP018871|1|2101357-2101442|CRISPRCasFinder
CTTTCAGATCAGCAATTTCGGCATCCGCTTTCAATTTTTCATCTGACAGCTTTTGATTATCCACTTTCAGATCAGCAATTTCGGCA

>NZ_CP018871|1|1|2101357-2101442|CRISPRCasFinder
CTTTCAGATCAGCAATTTCGGCA	TCCGCTTTCAATTTTTCATCTGACAGCTTTTGATTATCCA
CTTTCAGATCAGCAATTTCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP018871.1\|WP_075315833.1\|2099693_2099897_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018871.1\|WP_075315839.1\|2102702_2103092_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018871.1\|WP_075315841.1\|2104109_2105315_-\|minor-capsid-protein	unknown	unknown	gnl\|CDD\|309383
NZ_CP018871.1\|WP_075315828.1\|2096974_2097271_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018871.1\|WP_075315845.1\|2109548_2109734_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018871.1\|WP_075315836.1\|2100803_2101244_-\|DUF1320-domain-containing-protein	unknown	unknown	gnl\|CDD\|369176
NZ_CP018871.1\|WP_075315829.1\|2097254_2097767_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|226679
NZ_CP018871.1\|WP_075315835.1\|2100319_2100796_-\|phage-virion-morphogenesis-protein	unknown	unknown	gnl\|CDD\|368274
NZ_CP018871.1\|WP_075315827.1\|2096371_2096875_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018871.1\|WP_075315831.1\|2098320_2098881_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018871.1\|WP_075315840.1\|2103091_2104057_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018871.1\|WP_075316519.1\|2108340_2108823_-\|DUF2280-domain-containing-protein	unknown	unknown	gnl\|CDD\|370794
NZ_CP018871.1\|WP_075315830.1\|2097759_2098047_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP018871.1\|WP_075315834.1\|2099907_2100327_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018871.1\|WP_075315844.1\|2108869_2109514_-\|transposase	unknown	unknown	unknown
NZ_CP018871.1\|WP_075315843.1\|2106803_2108363_-\|phage-terminase-large-subunit	unknown	unknown	gnl\|CDD\|227697
NZ_CP018871.1\|WP_075315846.1\|2109733_2110009_-\|DUF968-domain-containing-protein	unknown	unknown	gnl\|CDD\|310615
NZ_CP018871.1\|WP_075315842.1\|2105318_2106800_-\|DUF935-family-protein	unknown	unknown	gnl\|CDD\|368731
NZ_CP018871.1\|WP_075315832.1\|2098948_2099701_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP018871.1\|WP_075315838.1\|2101625_2102699_-\|major-capsid-protein	unknown	unknown	gnl\|CDD\|377147

Protein	Function_ID	Function_description	E-value
NZ_CP018871.1\|WP_075315841.1\|2104109_2105315_-\|minor-capsid-protein	gnl\|CDD\|309383	pfam04233, Phage_Mu_F, Phage Mu protein F like protein. Members of this family are found in double-stranded DNA bacteriophages, and in some bacteria. A member of this family is required for viral head morphogenesis in bacteriophage SPP1. This family is possibly a minor head protein. This family may be related to the family TT_ORF1 (pfam02956).	1.09647e-22
NZ_CP018871.1\|WP_075315830.1\|2097759_2098047_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	0.000855153
NZ_CP018871.1\|WP_075316519.1\|2108340_2108823_-\|DUF2280-domain-containing-protein	gnl\|CDD\|370794	pfam10045, DUF2280, Uncharacterized conserved protein (DUF2280). Members of this family of hypothetical bacterial proteins have no known function.	8.1247e-34
NZ_CP018871.1\|WP_075315843.1\|2106803_2108363_-\|phage-terminase-large-subunit	gnl\|CDD\|227697	COG5410, COG5410, Uncharacterized protein conserved in bacteria [Function unknown].	1.25427e-86
NZ_CP018871.1\|WP_075315846.1\|2109733_2110009_-\|DUF968-domain-containing-protein	gnl\|CDD\|310615	pfam06147, DUF968, Protein of unknown function (DUF968). Family of uncharacterized prophage proteins found in Gammaproteobacteria. These may be HNH-nucleases, as there are several conserved cysteines and histidines.	1.997e-06
NZ_CP018871.1\|WP_075315829.1\|2097254_2097767_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|226679	COG4226, HicB, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	1.93652e-27
NZ_CP018871.1\|WP_075315835.1\|2100319_2100796_-\|phage-virion-morphogenesis-protein	gnl\|CDD\|368274	pfam05069, Phage_tail_S, Phage virion morphogenesis family. Protein S of phage P2 is thought to be involved in tail completion and stable head joining.	2.16212e-20
NZ_CP018871.1\|WP_075315836.1\|2100803_2101244_-\|DUF1320-domain-containing-protein	gnl\|CDD\|369176	pfam07030, DUF1320, Protein of unknown function (DUF1320). This family consists of both hypothetical bacterial and phage proteins of around 145 residues in length. The function of this family is unknown.	5.27983e-31
NZ_CP018871.1\|WP_075315842.1\|2105318_2106800_-\|DUF935-family-protein	gnl\|CDD\|368731	pfam06074, DUF935, Protein of unknown function (DUF935). This family consists of several bacterial proteins of unknown function as well as the Bacteriophage Mu gp29 protein.	2.54015e-48
NZ_CP018871.1\|WP_075315838.1\|2101625_2102699_-\|major-capsid-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	1.79507e-34

>NZ_CP018871.1|WP_075315836.1|2100803_2101244_-|DUF1320-domain-containing-protein
MYATREDLEARFGADEIANLEAMQTHPNAVNEALQDAFEEIDSYVAVAYTLPLPLIPSTLKRAACNIARYRLYFQQPTDEVEKRYESEVAYLKRIADKKAVLPILDDEDKPTGELPQQSPATMPIGTTYRGGMFADDILNQMPSLK
>NZ_CP018871.1|WP_075315835.1|2100319_2100796_-|phage-virion-morphogenesis-protein
MPFAISVKADGESAIMQLFDHLLGYDKQAMFDEIGAYGVSSTQLRFVDQSDVDGNPWKQSWRAELQNGQTLRDTGRLMNSLTHNVINNGVEWGTNVEYAATMHYGVEIYPKTAGYLVFQVAGNWRKVKKVEIEPRTFLGINQEDDEEILNIIGRHLSG
>NZ_CP018871.1|WP_075315834.1|2099907_2100327_-|hypothetical-protein
MANFFAVRAEIAEKLKEIPEFKEIYTPLNSVSVTEMGQVTPAAHVNFHRIRKVDDAGRGSKNLLGMQWAVTVACRNAQSQRNDITAVADEAGELLDQVIELLSGWEPESSIVPLRIIEVKDGYGPAFVYYTVIFESQKI
>NZ_CP018871.1|WP_075315833.1|2099693_2099897_-|hypothetical-protein
MADKQYKALQPVGRFVAGDFVAGLSEKQIAQLLANKVIEEVKPEKTAEPVIETKATPKTNKEVKVNG
>NZ_CP018871.1|WP_075315832.1|2098948_2099701_-|hypothetical-protein
MAKEYIYLQGKFYLSKISNGVAGAMRFIGNVPEFEIAITADMIEHTESTSGNSTTDFVMVNTTGVEFSGQLEEVNPENLEYILSGTNHEIASATVTDQNIGTVVAGEEIMLDGYNLSAVSFEDSTATPVAVDSAKYTLDAKFGTVIFNDVADLTMPLKATYTTGAVTQTTIASDLEEEYELFFKGINKATKKHMAVRLWRTKKSPETTFPLIHDDLGQYEIQGQALSDVEKESDSALGLYGHIVTIPSAA
>NZ_CP018871.1|WP_075315831.1|2098320_2098881_-|hypothetical-protein
MNDFFLANNESLPYVFVDKKIEVKQIQVKNLERFAGYANEIKNSLESYSVEAIKPLIEPQILNIMGLCSMVTSLQPSVFASNTTQTEAMAELVLKIIQVNDAFFKKEKKQQGSGKESSWFYAFSYLVKAGHRPDDIMNMTYGAFLQYLKEAQALERQQIKSFAIATRVANNAKEKGWDKYLKQLAG
>NZ_CP018871.1|WP_075315830.1|2097759_2098047_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MSKRQKLLEKLRRKPIPRDFTWDELVTLLGHYQYVLKNSTGSSHCKFLGHDNHIIMTSKPHPNNTLKGGHIKQALEAIDRYELLYMTPIEDDTNV
>NZ_CP018871.1|WP_075315829.1|2097254_2097767_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MSDNLLTYKGYYGSFEVSVEDDLIFGKILFIDDSVGFDSETIKGIKPAFEEAVDAYLEFCKEIGKDPNPSYSGKTAIRFDRELHRKVALLAKKEDQSMNDFIVTAIKNHVECVEKGTHQLSSINKYISGKLQKIVFDTRDESIQQTVLIESSNKISKQVEGKGVQNVTFC
>NZ_CP018871.1|WP_075315828.1|2096974_2097271_-|hypothetical-protein
MSHSVDSKPLSLLEITELIIKARNIHEGYYVPKMELAFGAGIESFQDSDDNKDDMPTIKVGIKSIDIQKVETKNKDYCVDASIVNPKVKRSKKSKIED
>NZ_CP018871.1|WP_075315827.1|2096371_2096875_-|hypothetical-protein
MKNFLIISFLFLTGCASNQAIKKDDALVTMSDPLDQLLFNEKIIDANYRFYDLKDYLTDPIFIQAVNHYYKDLPRALSVGHSLDSVDFGRNHFFLRHSIDSEKYNGPIKKDNRALLKQILVEEQCKGLFANSIAIKKKGGMGITQTYYFVHEKYRVVVDMNTRDCKK
>NZ_CP018871.1|WP_075315838.1|2101625_2102699_-|major-capsid-protein
MSVSFTFQNAPVELLDIPQLVLLTDTTKKVDTWLMDRFFPQRVSYSKKEVPVGELNTATPLAPFVSPNVAGRQINVAESGKVAFVKPAYLKPMVTIVPSDVQDSALVAQLRRYGVIATGSNRLSDAELLLIDQAQKAVYLRQSIENRKLLIARDVLLYGKTTFASSDFPSYTVDYDRNSACNFAPLIKWNLANATPVQDMQSMIDISVEHAGVAPNMALTSSKVFNVLIQNDEFKEKFIKPYASISVPLTPTFDDPSKPQFRGTVDNIQIWTYDGTHNMNGVVERFIPEDFFGMISDANGWIAHCAIQNIEAFGQPLEFFLAQWQEKNPSSIQLLAESSPLAVPNNKNGLVGGRGFV
>NZ_CP018871.1|WP_075315839.1|2102702_2103092_-|hypothetical-protein
MGATITETIESRQLVVGDGVRTENVKPTTATAYKRGDLIAVSAANVATHPAVDSETDVVGDWHAIVVEDMTAAQSTYHAANGLEMPIYVQGPFDVAVVTVNGTKLIANQIDAVRAQGLKNKIELRKVVG
>NZ_CP018871.1|WP_075315840.1|2103091_2104057_-|hypothetical-protein
MPDPNEERLKYLFNTPAIEVPQAVEGKKRTFKGTAYSGGRVDGHWYWGRTGVVFDLEGIEIDSPTALLEEHFGTSRVGVVKKVDTNGKIDVEGHFLTNDRAKAVVQDSDDEFPFQMSMYIDPGSVEEVNTGQTVVVNGQSFTGPIAVFRNNRIREFTICSTGADRNTSIKAFSSKANSNQQPVEDTNVTELEQAKAAQAKAEQERDAAQAELKKFRADKRTADITSLETELKIQFSTEDKTAYTNMDDATFNFAAKQLRQFSSKTPEQQPAPQPTPAQPNAALAHLFTHQANSGQGGGSGQPQGSALDQAFNKFAAAQESK
>NZ_CP018871.1|WP_075315841.1|2104109_2105315_-|minor-capsid-protein
MQPVPFLEAMQYAQLKKIVLPDEFYSLDLRTRQYASTVSFLSSLEQINTVMQAVNKSIADGSTFDSFKELVADSGIALPESYLDNVFRTNIQSAYAHGRWQQQQRNKAARPYLMYSAIDDSRARPSHLAMNRIIRHIDDPFWLIWYPPNGFRCRCTVIALTEKQALKYGITSDEDLPDIAVDLGWSTSPANYGDLSELVDQKISDSILDKEFLLNQKQVIKAEWTASEKLISLIAPMNDKSRDLFDTIAKTVIPLDPSIRPSAIKTFLDYVMGNDVALTAYLNQAPISKADDVLRRWFKADMAQIQAVSANTAITVSGTSSLNYVASLQVGQTITLDSPLMLAASNTDVVIKVENAKGLGIDLGKLNAGQGVLFEIGLSFEVVSITTEKGQLVYTLKALVN
>NZ_CP018871.1|WP_075315842.1|2105318_2106800_-|DUF935-family-protein
MAKKDKSKKSNNPQSATAGGYLYTQQAEQAFLKFLTRMPDIDEVLRKAGVSRNRLSILMYDDEIYQCVEKRQDKLESSPFRLEPNDTSASKILADEIRKWWSELTLGSQNARWYGYSVIEAVYNEDAIHFEGQTVTPYIGWEWVGVKPMQWFEPKNDGRLILGQNYNDQRRDIECDQKFKHFLTQCKPTYENPYGEALFSRLYWLHFFKNGTYKMWAKYVERFGNPLLVGKSSKGVKEMLAALLNAHAQSVLSINADESVEAITSNQNGSTAFESFDKKIERSIQKVILGQTLTSSTDGQGSRALGEVHLEVQNNKVQADIRMITSTIQAMIDALCFINGWDRHTIIIGDEKSLNTDKAGRDEKLKNAGANLTPQYFQREYGLQDGDVAESQNSLPLPQFKALPNRAFSFAAGVKKLSPDQQEVEELTDAQGPLSLLDQKQIAELVQQSESPEALAFNLQKLIPNASKTEFTANLERALYAGDVLGYVLSSGS
>NZ_CP018871.1|WP_075315843.1|2106803_2108363_-|phage-terminase-large-subunit
MNSKVNTSLLEMQLERERCEREHLFFTRRFFLPRMGFKFSVNWHHEYIAWAIDEVIAGRIKNLVINVPPGSGKTELLTNLIARGMARVARSRFLYLSFSQSLVEDVAATARNIVKSEDFQSLWPVKISKSTDSKSNWKTTVDGFDAGQVYAASMGGQVTGRRAGTLANVGFTGAIILDDPLKPEDAFSKSARKKANRKILNTVNSRKAKSDTPIILIMQRLHVEDPTNFVMTGNVPGEWEQISIPALIDDEYINQLPEHIQAKVPRDVERDQHGRQSYWPLKESLESLLQLEKGGEDKDGAIVSRYTFASQYMQNPKKLGGDLIKTEWFGRYKDLPPLLWRAIYVDTAQKVKTHNDYTVFLLVGLGVDGKIYIIDLLRGKWEAPEMNRQAKAFIDKHKAYTYETRPIRWMNVEDKAHGTQLIQNLGTYAGVPCIAIQRGTDKLTRFMDVQVQLEHDYENNPEDRLVMLPIGQPWVAAFIEECEAFTADMTHDHDDQVDTLIDAIEEATVKQNYEPPMGG
>NZ_CP018871.1|WP_075316519.1|2108340_2108823_-|DUF2280-domain-containing-protein
MARITKKVKLFIVRMLAEFETPTQTSKTVRDIFNVDVTPQQCEAYDPTKRTGQDLSQDLRDKFFEYRRIANQELEAIPIANMRYRLQLLQGLVDKYPDNPVLIPKWAEQAAKEMGGLYTNTSKTQLTGADGQPLNPEHVTHVVATPEQVRQALDELESKY
>NZ_CP018871.1|WP_075315844.1|2108869_2109514_-|transposase
MNEVGFIIQQRPYPPEWIFALDTPNFAPAPDLWRWIKSIFLNPEHKLFNPDHVHLGDFYYPQIAVMWAKGGFQKQGRFVVGQAEKVMINASGWKKERQEEQFYQWFNDLPDYLITIDATYAQHANDVDFCALIEHELYHIAHKKDEWGIPSYNRETGKPKLTIQGHDVEEFTGVVRRYGANQEVQEMVNAANQRPTVAKADVYHACGTCFLRVV
>NZ_CP018871.1|WP_075315845.1|2109548_2109734_-|hypothetical-protein
MLVQINSKMVINTKDVKRLKKEIVEGPCNPEAWFVMTVDNEWYRLTEHSLEEFLSLVNMEN
>NZ_CP018871.1|WP_075315846.1|2109733_2110009_-|DUF968-domain-containing-protein
MRDHKRLAAIRKLPCVKCGGGPSQAAHSNFGEHGKGKGIKADDRYTIPLCHSCHSDFDQYKNMGREESKEWFAKMLEKTERMLNLEDDGVF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1022113 : 1088980

Escherichia_phage(21.05%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155771036.1\|1022113_1022704_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	2.9e-21	37.8
WP_075314324.1\|1022802_1023822_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.8e-79	46.1
WP_075314326.1\|1023821_1024595_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.4e-76	57.0
WP_155771037.1\|1024652_1024796_-	hypothetical protein	NA	NA	NA	NA
WP_026070416.1\|1024906_1025299_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_075315204.1\|1025470_1026214_+	MFS transporter	NA	NA	NA	NA
WP_075316496.1\|1026219_1026894_+	hypothetical protein	NA	NA	NA	NA
WP_075315206.1\|1027009_1028230_+	Obg family GTPase CgtA	NA	NA	NA	NA
WP_004639988.1\|1028309_1029443_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-69	41.7
WP_075315208.1\|1029513_1031151_-	iron ABC transporter permease	NA	NA	NA	NA
WP_075315210.1\|1031239_1032256_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_075315212.1\|1032280_1033402_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.7e-28	33.5
WP_075315214.1\|1033453_1034146_-	HAD-IB family hydrolase	NA	NA	NA	NA
WP_075315216.1\|1034112_1035321_-	DUF1615 domain-containing protein	NA	NA	NA	NA
WP_075315218.1\|1035403_1036429_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
WP_004639978.1\|1036485_1037391_-	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
WP_171055803.1\|1037397_1038297_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_075315220.1\|1038429_1039611_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_000760495.1\|1039687_1039852_-	rubredoxin	NA	NA	NA	NA
WP_005084625.1\|1040204_1040642_+	SRPBCC domain-containing protein	NA	NA	NA	NA
WP_075315222.1\|1040802_1042329_+\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	3.7e-89	38.9
WP_075315224.1\|1044257_1045166_+	sulfate adenylyltransferase subunit CysD	NA	NA	NA	NA
WP_075315226.1\|1045211_1046825_+	sulfate adenylyltransferase subunit CysN	A0A1V0SGC3	Hokovirus	5.8e-40	27.4
WP_004639959.1\|1047022_1047538_+	hypothetical protein	NA	NA	NA	NA
WP_005089702.1\|1047586_1047850_+	ribosomal protein L7/L12	NA	NA	NA	NA
WP_004639956.1\|1047889_1049218_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_005084639.1\|1049323_1050313_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_034437451.1\|1050851_1052453_+	isocitrate lyase	NA	NA	NA	NA
WP_075315228.1\|1052539_1053007_-	copper resistance protein NlpE N-terminal domain-containing protein	NA	NA	NA	NA
WP_004639950.1\|1053373_1054795_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.6e-54	31.7
WP_075315230.1\|1055070_1056048_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	1.2e-35	31.7
WP_004639946.1\|1056051_1056591_+	HAD-IIIA family hydrolase	NA	NA	NA	NA
WP_005084648.1\|1056635_1057184_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_005084650.1\|1057167_1057716_+	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_005084652.1\|1057715_1058462_+	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-21	26.9
WP_005084655.1\|1060187_1062311_+	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	2.7e-29	24.5
WP_075315232.1\|1062323_1063514_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_075314324.1\|1063803_1064823_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.8e-79	46.1
WP_075314326.1\|1064822_1065596_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.4e-76	57.0
WP_075314252.1\|1066361_1066913_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_075315236.1\|1067034_1067634_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	8.5e-21	39.7
WP_075315238.1\|1067623_1068241_+	acyltransferase	M1HKK6	Paramecium_bursaria_Chlorella_virus	8.2e-11	52.4
WP_004639928.1\|1068357_1069200_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	4.5e-36	33.9
WP_005084663.1\|1069319_1069988_-	O-methyltransferase	S5YRC3	Mycobacterium_phage	1.3e-25	36.7
WP_171261746.1\|1070123_1070780_-	peptidase M15	NA	NA	NA	NA
WP_004639922.1\|1070955_1071285_-	ferredoxin family protein	NA	NA	NA	NA
WP_075315242.1\|1071533_1072073_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_075315244.1\|1072183_1074823_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	7.0e-35	21.9
WP_134251853.1\|1076950_1077994_+	hypothetical protein	NA	NA	NA	NA
WP_075315250.1\|1078258_1078708_+	hypothetical protein	NA	NA	NA	NA
WP_008942576.1\|1078790_1079948_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_075315252.1\|1080931_1082107_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_075315254.1\|1082279_1082648_-	hypothetical protein	NA	NA	NA	NA
WP_075315256.1\|1082669_1083605_-	sel1 repeat family protein	NA	NA	NA	NA
WP_134251855.1\|1083920_1086092_+	hypothetical protein	NA	NA	NA	NA
WP_004639915.1\|1087627_1087846_+	hypothetical protein	NA	NA	NA	NA
WP_075315262.1\|1088047_1088980_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	2.2e-55	40.3

DBSCAN-SWA_2

1126996 : 1183810

Aeromonas_phage(18.18%)

integrase,tRNA,transposase

attL 1126417:1126431|attR 1160637:1160651

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1126417:1126431	attL	NA	NA	NA	NA
WP_075315304.1\|1126996_1128130_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_075315305.1\|1128134_1128623_-	NUDIX hydrolase	NA	NA	NA	NA
WP_005084811.1\|1128723_1129182_-	hypothetical protein	NA	NA	NA	NA
WP_005084814.1\|1129197_1129737_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_075315306.1\|1129834_1130983_-	D-alanyl-D-alanine carboxypeptidase PBP5/6	B6DZZ7	Stx2-converting_phage	6.3e-65	38.4
WP_005084819.1\|1131135_1131531_-	hypothetical protein	NA	NA	NA	NA
WP_075315307.1\|1131710_1132073_+	hypothetical protein	NA	NA	NA	NA
WP_005084823.1\|1132212_1132584_-	hypothetical protein	NA	NA	NA	NA
WP_005089841.1\|1132736_1133510_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.4e-54	45.3
WP_005089843.1\|1133620_1134451_+	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	2.6e-12	45.7
WP_005084828.1\|1134598_1135528_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_075315308.1\|1135592_1138226_-	ATP-binding protein	NA	NA	NA	NA
WP_075315309.1\|1138413_1140591_+	MFS transporter	NA	NA	NA	NA
WP_004639634.1\|1140593_1140995_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_075315310.1\|1141134_1142103_+	bile acid:sodium symporter	NA	NA	NA	NA
WP_004639630.1\|1142302_1142527_+	50S ribosomal protein L31	NA	NA	NA	NA
WP_075315311.1\|1142637_1144731_-	EAL domain-containing protein	NA	NA	NA	NA
WP_075315312.1\|1144712_1146467_-	GTPase	NA	NA	NA	NA
WP_004639623.1\|1146480_1147497_-	EF-P beta-lysylation protein EpmB	NA	NA	NA	NA
WP_004639622.1\|1147850_1148420_+	elongation factor P	NA	NA	NA	NA
WP_161401447.1\|1148684_1150715_+	carbon starvation protein A	NA	NA	NA	NA
WP_004639619.1\|1150701_1151004_+	YbdD/YjiX family protein	NA	NA	NA	NA
WP_005089856.1\|1151086_1152046_+	MoxR family ATPase	NA	NA	NA	NA
WP_075315313.1\|1152060_1152978_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_081377729.1\|1152982_1154974_+	DUF3488 domain-containing transglutaminase family protein	NA	NA	NA	NA
WP_016543150.1\|1155292_1156315_+\|integrase	site-specific integrase	A0A0R6PHH4	Moraxella_phage	3.2e-68	43.8
WP_008941996.1\|1156339_1156642_-	hypothetical protein	NA	NA	NA	NA
WP_016543151.1\|1156895_1157591_-	hypothetical protein	NA	NA	NA	NA
WP_016543152.1\|1158093_1159041_+	MobA/MobL family protein	NA	NA	NA	NA
WP_004726718.1\|1159861_1160470_-	recombinase family protein	A0A219Y9V9	Aeromonas_phage	2.7e-14	36.8
WP_004726714.1\|1160564_1163531_+\|transposase	Tn3-like element ISAcsp1 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	68.4
1160637:1160651	attR	NA	NA	NA	NA
WP_009516416.1\|1163532_1163766_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	3.5e-07	45.3
WP_079267004.1\|1163919_1164237_+	recombinase family protein	NA	NA	NA	NA
WP_004658508.1\|1164477_1165557_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_004658513.1\|1165773_1166094_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_004658516.1\|1166143_1167535_+	cytochrome P450	NA	NA	NA	NA
WP_001193555.1\|1167621_1168836_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_004656998.1\|1168874_1169105_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_000149466.1\|1169759_1170629_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_000952904.1\|1170712_1171339_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_000186299.1\|1171335_1172307_+	BtrH N-terminal domain-containing protein	NA	NA	NA	NA
WP_000378064.1\|1172363_1172828_+	PaaI family thioesterase	NA	NA	NA	NA
WP_000029507.1\|1172829_1173249_+	PaaI family thioesterase	NA	NA	NA	NA
WP_075315314.1\|1173340_1173460_-	Hin recombinase	NA	NA	NA	NA
WP_075315315.1\|1173514_1176025_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	56.4
WP_075315317.1\|1176119_1176728_+	recombinase family protein	A0A219Y9V9	Aeromonas_phage	4.6e-14	36.2
WP_032864714.1\|1176720_1177044_+	hypothetical protein	NA	NA	NA	NA
WP_016541971.1\|1177167_1177491_-	hypothetical protein	A0A2H4JC99	uncultured_Caudovirales_phage	1.6e-18	50.0
WP_016541972.1\|1177474_1177822_-	hypothetical protein	NA	NA	NA	NA
WP_109439987.1\|1178154_1178977_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_016660659.1\|1179211_1179565_-	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_004679652.1\|1180405_1181014_+	hypothetical protein	NA	NA	NA	NA
WP_016541975.1\|1181044_1182625_+	CAP domain-containing protein	NA	NA	NA	NA
WP_075314324.1\|1182790_1183810_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.8e-79	46.1

DBSCAN-SWA_3

1205598 : 1266935

Escherichia_phage(22.22%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075315333.1\|1205598_1206291_-\|protease	zinc protease	NA	NA	NA	NA
WP_075315335.1\|1206283_1206814_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_075315337.1\|1206929_1207178_-	hydrolase	NA	NA	NA	NA
WP_075315339.1\|1207265_1207901_+	hypothetical protein	NA	NA	NA	NA
WP_075315341.1\|1208236_1208524_+	hypothetical protein	NA	NA	NA	NA
WP_081377730.1\|1208513_1209413_+	hypothetical protein	NA	NA	NA	NA
WP_075315343.1\|1209516_1209789_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_155771038.1\|1209923_1210691_+	hypothetical protein	A0A0P0J0J7	Acinetobacter_phage	4.2e-49	56.2
WP_075315347.1\|1211898_1212582_-	pirin family protein	NA	NA	NA	NA
WP_026070416.1\|1212803_1213196_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_075314324.1\|1213432_1214452_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.8e-79	46.1
WP_075314326.1\|1214451_1215225_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.4e-76	57.0
WP_081377731.1\|1215331_1215988_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	3.8e-22	36.2
WP_075315351.1\|1216051_1217395_-	argininosuccinate synthase	A0A140XAJ5	Dickeya_phage	1.0e-53	79.4
WP_075315353.1\|1217625_1218012_-	hypothetical protein	NA	NA	NA	NA
WP_075315355.1\|1218181_1220212_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
WP_075315357.1\|1220901_1223244_+	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_075315359.1\|1226738_1231760_+	RHS repeat protein	A0A2H4JFP5	uncultured_Caudovirales_phage	2.8e-40	42.0
WP_075315361.1\|1231707_1232253_+	hypothetical protein	NA	NA	NA	NA
WP_075315363.1\|1232380_1232833_+	hypothetical protein	NA	NA	NA	NA
WP_081377732.1\|1232843_1233272_+	sel1 repeat family protein	NA	NA	NA	NA
WP_075315365.1\|1233293_1234226_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.9e-56	40.8
WP_075315367.1\|1234902_1235421_+	sel1 repeat family protein	NA	NA	NA	NA
WP_075315369.1\|1235753_1237109_-	dihydroorotase	NA	NA	NA	NA
WP_005089914.1\|1237098_1237659_-	carbonate dehydratase	NA	NA	NA	NA
WP_075315371.1\|1237680_1238100_-	phosphoribosyl-AMP cyclohydrolase	NA	NA	NA	NA
WP_075315373.1\|1238093_1238996_-	GTP cyclohydrolase I FolE2	NA	NA	NA	NA
WP_075315375.1\|1239106_1239820_+	peptidase M15	NA	NA	NA	NA
WP_075315377.1\|1239826_1240225_+	transcriptional repressor	NA	NA	NA	NA
WP_075315379.1\|1240240_1241464_+	GTP-binding protein	NA	NA	NA	NA
WP_005082506.1\|1241527_1242352_-	IclR family transcriptional regulator PcaU	NA	NA	NA	NA
WP_005082509.1\|1242607_1243294_+	3-oxoacid CoA-transferase subunit A	NA	NA	NA	NA
WP_075315381.1\|1243305_1243959_+	CoA transferase subunit B	NA	NA	NA	NA
WP_075315383.1\|1244074_1245283_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_075315385.1\|1245291_1246647_+	3-carboxy-cis,cis-muconate cycloisomerase	NA	NA	NA	NA
WP_075315387.1\|1246643_1247429_+	3-oxoadipate enol-lactonase	NA	NA	NA	NA
WP_005082520.1\|1247471_1248824_+	MFS transporter	NA	NA	NA	NA
WP_005089936.1\|1248850_1249264_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
WP_005082522.1\|1249274_1250000_+	protocatechuate 3,4-dioxygenase subunit beta	NA	NA	NA	NA
WP_075315389.1\|1250012_1250642_+	protocatechuate 3,4-dioxygenase subunit alpha	NA	NA	NA	NA
WP_167365856.1\|1250725_1251559_+	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	5.8e-20	30.2
WP_075315393.1\|1251577_1253038_+	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_075315395.1\|1253098_1254427_+	carbohydrate porin	NA	NA	NA	NA
WP_075315397.1\|1254443_1256867_+	glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase	NA	NA	NA	NA
WP_075315399.1\|1257022_1257523_+	2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase	NA	NA	NA	NA
WP_075315401.1\|1257522_1257858_+	hydroxyisourate hydrolase	NA	NA	NA	NA
WP_075315403.1\|1257905_1259282_+	purine permease	NA	NA	NA	NA
WP_075315405.1\|1259466_1260762_+	outer membrane porin, OprD family	NA	NA	NA	NA
WP_005082538.1\|1261016_1261289_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_075315407.1\|1261785_1262943_-	FAD-dependent urate hydroxylase HpxO	NA	NA	NA	NA
WP_075315409.1\|1263124_1263835_-	FadR family transcriptional regulator	NA	NA	NA	NA
WP_075315410.1\|1264001_1265006_+	allantoicase	NA	NA	NA	NA
WP_075315411.1\|1265301_1265808_+	ureidoglycolate lyase	NA	NA	NA	NA
WP_075315365.1\|1266002_1266935_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	1.9e-56	40.8

DBSCAN-SWA_4

1556203 : 1596370

Escherichia_phage(33.33%)

integrase,transposase

attL 1558681:1558697|attR 1597794:1597810

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155771040.1\|1556203_1557581_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.4e-74	53.5
WP_008941431.1\|1557665_1558538_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_075315575.1\|1558541_1559627_-	alpha/beta fold hydrolase	NA	NA	NA	NA
1558681:1558697	attL	NA	NA	NA	NA
WP_075315576.1\|1559816_1561004_+	O-succinylhomoserine sulfhydrylase	NA	NA	NA	NA
WP_004662103.1\|1561016_1561346_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_004639103.1\|1561445_1562042_+	recombination protein RecR	NA	NA	NA	NA
WP_004639105.1\|1562325_1563468_+	HRDC domain-containing protein	NA	NA	NA	NA
WP_005080797.1\|1563608_1563914_+	YcgL domain-containing protein	NA	NA	NA	NA
WP_004639110.1\|1563906_1564296_+	hypothetical protein	NA	NA	NA	NA
WP_004639112.1\|1564338_1565190_+	MoxR family ATPase	NA	NA	NA	NA
WP_004639114.1\|1565202_1566390_+	VWA domain-containing protein	NA	NA	NA	NA
WP_075315577.1\|1566552_1567563_+	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_005090564.1\|1567574_1568666_+	chorismate synthase	A0A291AU41	Pandoravirus	1.9e-79	44.4
WP_075315578.1\|1568757_1569987_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_075315579.1\|1570333_1571083_+	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_075315580.1\|1571155_1571857_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_075316503.1\|1571988_1573020_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_081377716.1\|1573129_1574455_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_075316504.1\|1574768_1575467_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_004708944.1\|1575508_1578481_-\|transposase	Tn3 family transposase	Q1MVP5	Enterobacteria_phage	1.3e-58	23.0
WP_004708945.1\|1578487_1579450_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_004708954.1\|1579473_1579908_-	DedA family protein	NA	NA	NA	NA
WP_075314324.1\|1580115_1581135_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.8e-79	46.1
WP_075314326.1\|1581134_1581908_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.4e-76	57.0
WP_004708957.1\|1583250_1583940_-	hypothetical protein	NA	NA	NA	NA
WP_004708958.1\|1583950_1584664_-	HupE/UreJ family protein	NA	NA	NA	NA
WP_025469307.1\|1584683_1585043_-	hypothetical protein	NA	NA	NA	NA
WP_075315582.1\|1585055_1588190_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_075315583.1\|1588207_1589677_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004708966.1\|1589669_1590887_-	TolC family protein	NA	NA	NA	NA
WP_004708968.1\|1590935_1591382_-	hypothetical protein	NA	NA	NA	NA
WP_004708970.1\|1591443_1591704_-	metal/formaldehyde-sensitive transcriptional repressor	NA	NA	NA	NA
WP_004708976.1\|1591764_1592700_+	CDF family Co(II)/Ni(II) efflux transporter DmeF	NA	NA	NA	NA
WP_004708977.1\|1592791_1593226_-	hypothetical protein	NA	NA	NA	NA
WP_004708979.1\|1593409_1594444_+	DNA-binding protein	NA	NA	NA	NA
WP_155771042.1\|1594454_1594715_-	hypothetical protein	NA	NA	NA	NA
WP_044099894.1\|1594786_1596370_-\|transposase	IS66-like element ISAba25 family transposase	A0A218MNE7	uncultured_virus	3.2e-144	54.0
1597794:1597810	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2080260 : 2126575

Acinetobacter_phage(41.38%)

integrase,capsid,terminase,transposase

attL 2075822:2075838|attR 2087700:2087716

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2075822:2075838	attL	NA	NA	NA	NA
WP_075315812.1\|2080260_2081487_+\|integrase	tyrosine-type recombinase/integrase	A0A0P0IRB7	Acinetobacter_phage	8.7e-89	43.9
WP_075315813.1\|2081483_2081702_+	hypothetical protein	NA	NA	NA	NA
WP_075315814.1\|2081880_2082504_-	lysozyme	A0A075DXC6	Acinetobacter_phage	1.9e-68	62.5
WP_075315815.1\|2082749_2083118_-	hypothetical protein	A0A2H4JFC0	uncultured_Caudovirales_phage	1.7e-32	62.5
WP_075315816.1\|2083177_2083408_-	hypothetical protein	NA	NA	NA	NA
WP_075315817.1\|2083400_2085479_-	hypothetical protein	NA	NA	NA	NA
WP_075315818.1\|2085496_2085883_-	hypothetical protein	NA	NA	NA	NA
WP_075315819.1\|2085879_2086176_-	hypothetical protein	NA	NA	NA	NA
WP_075315820.1\|2086172_2087441_-	hypothetical protein	NA	NA	NA	NA
WP_075315821.1\|2087494_2089111_-	hypothetical protein	A0A0M4U447	Ralstonia_phage	2.5e-115	40.8
2087700:2087716	attR	NA	NA	NA	NA
WP_075315822.1\|2089122_2091093_-	hypothetical protein	A0A0M4U447	Ralstonia_phage	1.4e-96	35.6
WP_075315823.1\|2091092_2091494_-	hypothetical protein	NA	NA	NA	NA
WP_075315825.1\|2095612_2095897_-	hypothetical protein	NA	NA	NA	NA
WP_075315826.1\|2095995_2096322_-	hypothetical protein	NA	NA	NA	NA
WP_075315827.1\|2096371_2096875_-	hypothetical protein	NA	NA	NA	NA
WP_075315828.1\|2096974_2097271_-	hypothetical protein	NA	NA	NA	NA
WP_075315829.1\|2097254_2097767_-	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	6.1e-20	43.5
WP_075315830.1\|2097759_2098047_-	type II toxin-antitoxin system HicA family toxin	K7PH44	Enterobacterial_phage	3.3e-07	38.4
WP_075315831.1\|2098320_2098881_-	hypothetical protein	NA	NA	NA	NA
WP_075315832.1\|2098948_2099701_-	hypothetical protein	NA	NA	NA	NA
WP_075315833.1\|2099693_2099897_-	hypothetical protein	NA	NA	NA	NA
WP_075315834.1\|2099907_2100327_-	hypothetical protein	NA	NA	NA	NA
WP_075315835.1\|2100319_2100796_-	phage virion morphogenesis protein	A0A2H4J9E5	uncultured_Caudovirales_phage	3.2e-07	30.7
WP_075315836.1\|2100803_2101244_-	DUF1320 domain-containing protein	A0A2I7S9E9	Vibrio_phage	5.1e-07	34.6
WP_075315837.1\|2101252_2101615_-	hypothetical protein	NA	NA	NA	NA
WP_075315838.1\|2101625_2102699_-\|capsid	major capsid protein	NA	NA	NA	NA
WP_075315839.1\|2102702_2103092_-	hypothetical protein	NA	NA	NA	NA
WP_075315840.1\|2103091_2104057_-	hypothetical protein	NA	NA	NA	NA
WP_075315841.1\|2104109_2105315_-\|capsid	minor capsid protein	A0A2H4JHL0	uncultured_Caudovirales_phage	5.8e-29	36.1
WP_075315842.1\|2105318_2106800_-	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	3.5e-108	45.0
WP_075315843.1\|2106803_2108363_-\|terminase	phage terminase large subunit	Q6XQD9	Escherichia_phage	2.1e-87	40.7
WP_075316519.1\|2108340_2108823_-	DUF2280 domain-containing protein	A0A0P0HSK4	Acinetobacter_phage	2.8e-35	52.9
WP_075315844.1\|2108869_2109514_-\|transposase	transposase	A0A0N7IRF1	Acinetobacter_phage	6.8e-93	70.4
WP_075315845.1\|2109548_2109734_-	hypothetical protein	NA	NA	NA	NA
WP_075315846.1\|2109733_2110009_-	DUF968 domain-containing protein	A0A0D4DC07	Acinetobacter_phage	2.3e-26	64.8
WP_075315847.1\|2109995_2110178_-	hypothetical protein	NA	NA	NA	NA
WP_075314326.1\|2110339_2111113_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.4e-76	57.0
WP_075314324.1\|2111112_2112132_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.8e-79	46.1
WP_075315848.1\|2112873_2113278_-	hypothetical protein	Q716B1	Shigella_phage	9.7e-37	65.6
WP_075315849.1\|2113401_2113947_-	hypothetical protein	A0A0D4DCD6	Acinetobacter_phage	4.6e-82	83.6
WP_075315850.1\|2113956_2114382_-	VRR-NUC domain-containing protein	A0A0D4DBJ8	Acinetobacter_phage	5.4e-62	82.3
WP_075315851.1\|2114391_2114571_-	hypothetical protein	NA	NA	NA	NA
WP_075315852.1\|2114989_2115274_-	hypothetical protein	NA	NA	NA	NA
WP_075316520.1\|2115260_2115569_-	hypothetical protein	NA	NA	NA	NA
WP_075315854.1\|2115960_2116446_-	hypothetical protein	K7P7B7	Enterobacteria_phage	2.4e-13	58.1
WP_075315855.1\|2116445_2116727_-	hypothetical protein	NA	NA	NA	NA
WP_075315856.1\|2116723_2117860_-	replication protein	A0A0P0IKQ2	Acinetobacter_phage	2.0e-26	51.3
WP_075315857.1\|2117856_2118708_-	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_075315858.1\|2118704_2119004_-	hypothetical protein	NA	NA	NA	NA
WP_075315859.1\|2119000_2119426_-	hypothetical protein	NA	NA	NA	NA
WP_075315860.1\|2119443_2119758_-	hypothetical protein	NA	NA	NA	NA
WP_075315861.1\|2119767_2119983_-	helix-turn-helix domain-containing protein	A0A2H4J0V8	uncultured_Caudovirales_phage	1.0e-08	49.3
WP_005090154.1\|2120082_2120763_+	helix-turn-helix domain-containing protein	A0A2H4JAJ5	uncultured_Caudovirales_phage	2.4e-24	48.8
WP_075315862.1\|2120970_2121429_+	hypothetical protein	A0A0N7IRE9	Acinetobacter_phage	3.5e-27	48.9
WP_075315863.1\|2121428_2121758_+	hypothetical protein	NA	NA	NA	NA
WP_075315864.1\|2121760_2122924_+	ATP-binding protein	A0A0P0HSM9	Acinetobacter_phage	3.8e-126	60.7
WP_075315865.1\|2122920_2123598_+	DUF3820 family protein	A0A0A1IWL5	Pseudomonas_phage	3.5e-31	38.4
WP_075315866.1\|2123602_2124715_+	hypothetical protein	A0A0D4DBR8	Acinetobacter_phage	7.0e-53	39.2
WP_075316521.1\|2125265_2125607_+	hypothetical protein	NA	NA	NA	NA
WP_075315867.1\|2125609_2125876_+	hypothetical protein	NA	NA	NA	NA
WP_171261754.1\|2125999_2126575_+	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	A0A0P0IKJ1	Acinetobacter_phage	3.7e-106	94.8

DBSCAN-SWA_6

2683070 : 2690299

Escherichia_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155771049.1\|2683070_2683379_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	7.9e-15	50.0
WP_075314326.1\|2683401_2684175_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.4e-76	57.0
WP_075314324.1\|2684174_2685194_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.8e-79	46.1
WP_075316144.1\|2685876_2686428_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.6e-12	30.8
WP_075316145.1\|2686433_2688356_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.0e-123	37.5
WP_075316146.1\|2688655_2690299_+	acyl-CoA synthetase	A0A2H4PQU7	Staphylococcus_phage	1.6e-29	25.8

DBSCAN-SWA_7

2726089 : 2770609

uncultured_Caudovirales_phage(35.71%)

integrase,transposase

attL 2733479:2733497|attR 2770797:2770815

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081377716.1\|2726089_2727415_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_050560258.1\|2728218_2729394_+	MFS transporter	NA	NA	NA	NA
WP_075316168.1\|2729557_2731666_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_004655725.1\|2731662_2733402_+	ATP-dependent helicase	NA	NA	NA	NA
2733479:2733497	attL	NA	NA	NA	NA
WP_081377716.1\|2733961_2735287_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_004655733.1\|2735391_2736345_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	7.8e-61	42.5
WP_000174605.1\|2736362_2737067_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.3e-92	70.9
WP_004655735.1\|2737072_2738116_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_004655737.1\|2738123_2738597_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	1.1e-36	51.9
WP_004655738.1\|2738603_2738924_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	6.3e-23	61.4
WP_075316169.1\|2738983_2739418_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.5e-40	62.0
WP_018679542.1\|2739668_2740280_-	lipoprotein signal peptidase	NA	NA	NA	NA
WP_018679541.1\|2740331_2742170_-	ferrous iron transporter B	NA	NA	NA	NA
WP_004699719.1\|2742159_2742417_-	ferrous iron transport protein A	NA	NA	NA	NA
WP_075316170.1\|2742427_2743708_-	cation transporter	NA	NA	NA	NA
WP_004880426.1\|2743792_2744197_+	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_004880428.1\|2744351_2745233_-	copper resistance protein B	NA	NA	NA	NA
WP_075316171.1\|2745219_2747109_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_002058521.1\|2747197_2747548_-	hypothetical protein	NA	NA	NA	NA
WP_075316531.1\|2747698_2748382_+	heavy metal response regulator transcription factor	W8CYM9	Bacillus_phage	7.1e-32	34.7
WP_075316172.1\|2748371_2749748_+	heavy metal sensor histidine kinase	NA	NA	NA	NA
WP_075316173.1\|2749821_2752188_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	4.7e-91	35.8
WP_004823034.1\|2752468_2752849_+	copper resistance protein CopC	NA	NA	NA	NA
WP_075316174.1\|2752916_2753798_+	CopD family protein	NA	NA	NA	NA
WP_075316175.1\|2753812_2754085_+	hypothetical protein	NA	NA	NA	NA
WP_075316176.1\|2754190_2755087_-	hydrolase or metal-binding protein	NA	NA	NA	NA
WP_075316177.1\|2755230_2756358_-	YqaJ viral recombinase family protein	A0A139ZPJ9	Marinitoga_camini_virus	2.3e-43	42.9
WP_075316178.1\|2756533_2757595_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	2.9e-56	37.5
WP_075316179.1\|2757649_2757949_-	hypothetical protein	NA	NA	NA	NA
WP_005147529.1\|2758050_2758428_-	hypothetical protein	NA	NA	NA	NA
WP_075316180.1\|2758593_2759760_-	hypothetical protein	NA	NA	NA	NA
WP_075316181.1\|2760575_2761817_+	hypothetical protein	NA	NA	NA	NA
WP_155771046.1\|2761997_2763163_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.4e-50	39.2
WP_075314324.1\|2763949_2764969_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.8e-79	46.1
WP_075314326.1\|2764968_2765742_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.4e-76	57.0
WP_081377749.1\|2765764_2766067_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.3e-13	50.6
WP_075314252.1\|2766108_2766660_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_075316184.1\|2766915_2767239_+	hypothetical protein	NA	NA	NA	NA
WP_075316185.1\|2767294_2768227_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_075316186.1\|2768228_2769188_+	hypothetical protein	NA	NA	NA	NA
WP_075316187.1\|2769204_2769477_+	pyocin activator PrtN family protein	NA	NA	NA	NA
WP_075316188.1\|2769460_2770609_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4J8L8	uncultured_Caudovirales_phage	2.9e-94	46.7
2770797:2770815	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3120326 : 3178297

Escherichia_phage(21.05%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161419264.1\|3120326_3120683_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.6e-25	52.6
WP_075316337.1\|3120709_3121261_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_075316338.1\|3121338_3122505_-	peptidase S41	A0A0R6PIZ1	Moraxella_phage	1.7e-12	30.0
WP_075316339.1\|3122514_3124059_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
WP_075316340.1\|3124183_3125254_-	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_004637590.1\|3125253_3126354_-	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_075316543.1\|3126509_3127958_+	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	4.5e-52	37.0
WP_005083977.1\|3127961_3128369_+	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_075316341.1\|3128404_3129031_+	hypothetical protein	NA	NA	NA	NA
WP_005083982.1\|3129077_3129737_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.5e-34	39.1
WP_075316343.1\|3129899_3130739_-	aquaporin	NA	NA	NA	NA
WP_075316344.1\|3131137_3132430_-	DNA adenine methylase	A0A0P0BWH0	Ostreococcus_mediterraneus_virus	7.4e-38	32.8
WP_075316345.1\|3132426_3133527_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.1e-47	36.6
WP_004637581.1\|3133539_3134004_-	transcriptional repressor NrdR	NA	NA	NA	NA
WP_075316346.1\|3134140_3135529_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	8.5e-32	30.4
WP_000780326.1\|3135597_3135936_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_004637578.1\|3136209_3136437_+	accessory factor UbiK family protein	NA	NA	NA	NA
WP_032027898.1\|3136694_3138482_+	hypothetical protein	NA	NA	NA	NA
WP_032027897.1\|3138598_3139345_-	thiol:disulfide interchange protein DsbG	NA	NA	NA	NA
WP_079281595.1\|3139357_3140194_-	TlpA family protein disulfide reductase	NA	NA	NA	NA
WP_032027894.1\|3140190_3142098_-	protein-disulfide reductase DsbD	NA	NA	NA	NA
WP_075316347.1\|3142207_3142879_+	response regulator transcription factor	NA	NA	NA	NA
WP_032027891.1\|3142875_3144258_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	5.9e-09	24.4
WP_032027889.1\|3144228_3145149_-	transcriptional regulator GcvA	NA	NA	NA	NA
WP_032027888.1\|3145289_3146060_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.5e-17	30.0
WP_032027886.1\|3146100_3146442_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_032027884.1\|3146520_3147204_+	cupin domain-containing protein	NA	NA	NA	NA
WP_032027882.1\|3147200_3148283_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_032027880.1\|3148301_3149330_+	alcohol dehydrogenase catalytic domain-containing protein	A0A2P1EIJ9	Megavirus	4.7e-27	27.7
WP_032027879.1\|3149364_3150555_+	MFS transporter	NA	NA	NA	NA
WP_032027876.1\|3150832_3151936_+	hypothetical protein	A0A2H4J138	uncultured_Caudovirales_phage	5.8e-68	43.4
WP_032027874.1\|3151924_3152563_-	hypothetical protein	A0A2H4J137	uncultured_Caudovirales_phage	1.4e-26	36.7
WP_032027872.1\|3152685_3153318_-	hypothetical protein	NA	NA	NA	NA
WP_032027871.1\|3153489_3154944_-	hypothetical protein	NA	NA	NA	NA
WP_032027869.1\|3154918_3156046_-	TniQ family protein	NA	NA	NA	NA
WP_032027868.1\|3156074_3156995_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_075314324.1\|3158771_3159791_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.8e-79	46.1
WP_075314326.1\|3159790_3160564_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.4e-76	57.0
WP_032027865.1\|3160873_3161584_-\|transposase	heteromeric transposase endonuclease subunit TnsA	NA	NA	NA	NA
WP_155771046.1\|3161663_3162829_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.4e-50	39.2
WP_000282330.1\|3163151_3165566_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_000499370.1\|3165657_3166659_+	DUF4935 domain-containing protein	NA	NA	NA	NA
WP_000148671.1\|3167041_3168124_+	XRE family transcriptional regulator	A0A0U4JD08	Gordonia_phage	4.0e-37	36.8
WP_001141891.1\|3168329_3168509_+	hypothetical protein	NA	NA	NA	NA
WP_000211630.1\|3168623_3169637_+	nucleotidyltransferase	NA	NA	NA	NA
WP_000421732.1\|3169636_3171349_+	ThiF family adenylyltransferase	NA	NA	NA	NA
WP_000913090.1\|3171354_3171816_+	Mov34/MPN/PAD-1 family protein	NA	NA	NA	NA
WP_008942236.1\|3171818_3173207_+	SAVED domain-containing protein	NA	NA	NA	NA
WP_075314326.1\|3173677_3174451_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.4e-76	57.0
WP_075314324.1\|3174450_3175470_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.8e-79	46.1
WP_100223916.1\|3177131_3178297_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.4e-50	39.2

DBSCAN-SWA_9

3379431 : 3411953

Klosneuvirus(25.0%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155771053.1\|3379431_3380522_-\|transposase	IS4 family transposase ISAba1	NA	NA	NA	NA
WP_075316449.1\|3380568_3381270_-	RloB domain-containing protein	NA	NA	NA	NA
WP_075316450.1\|3381288_3382521_-	ATP-binding protein	NA	NA	NA	NA
WP_081377716.1\|3382788_3384114_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_075316451.1\|3384247_3384814_-	5'-nucleosidase	NA	NA	NA	NA
WP_075316452.1\|3384875_3386009_-	TDT family transporter	NA	NA	NA	NA
WP_004637365.1\|3386216_3387218_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_075316453.1\|3387280_3390118_+\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	2.4e-73	25.9
WP_004637362.1\|3390110_3390641_+	signal peptidase II	NA	NA	NA	NA
WP_004637361.1\|3390640_3391123_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_005085893.1\|3391229_3391772_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_075316454.1\|3392102_3392339_-	hypothetical protein	NA	NA	NA	NA
WP_075316455.1\|3398353_3398908_-	peptidyl-prolyl cis-trans isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	8.1e-18	37.7
WP_017395491.1\|3399038_3400136_-	alpha/beta hydrolase	A0A2K9L3Q5	Tupanvirus	2.5e-10	29.5
WP_075316456.1\|3400345_3400546_-	hypothetical protein	NA	NA	NA	NA
WP_005086115.1\|3400833_3401064_-	hypothetical protein	NA	NA	NA	NA
WP_100833738.1\|3401493_3402623_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_004637354.1\|3402744_3403599_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_005091991.1\|3404759_3405305_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004949942.1\|3405493_3407437_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.7e-147	48.6
WP_075316457.1\|3407482_3408367_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_017395359.1\|3408530_3409442_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_075316458.1\|3409865_3410780_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_171261741.1\|3411182_3411953_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage