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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013784 Piscirickettsia salmonis strain PM49811B plasmid p3PS6, complete sequence 0 crisprs NA 0 0 3 0
NZ_CP013781 Piscirickettsia salmonis strain PM49811B, complete genome 2 crisprs cas3,DinG,csa3,DEDDh 0 0 68 0
NZ_CP013783 Piscirickettsia salmonis strain PM49811B plasmid p2PS6, complete sequence 0 crisprs NA 0 0 4 0
NZ_CP013785 Piscirickettsia salmonis strain PM49811B plasmid p4PS6, complete sequence 0 crisprs NA 0 0 2 0
NZ_CP013782 Piscirickettsia salmonis strain PM49811B plasmid p1PS6, complete sequence 0 crisprs NA 0 0 4 0

Results visualization

1. NZ_CP013785
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 16237 21 unidentified_phage(27.27%) capsid,integrase,transposase attL 1:60|attR 22823:23579
DBSCAN-SWA_2 20495 : 31339 12 unidentified_phage(50.0%) transposase,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP013781
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013781_1 442523-442632 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013781_2 3076929-3077024 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 76236 58 uncultured_Mediterranean_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_2 79575 : 83395 5 Acinetobacter_phage(50.0%) transposase NA
DBSCAN-SWA_3 94264 : 94978 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_4 138409 : 139708 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_5 143155 : 190668 42 Tupanvirus(15.38%) transposase,tRNA NA
DBSCAN-SWA_6 194024 : 296548 94 Burkholderia_phage(13.64%) protease,transposase,tRNA NA
DBSCAN-SWA_7 323279 : 330138 5 Hokovirus(33.33%) NA NA
DBSCAN-SWA_8 340659 : 341382 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_9 349357 : 370451 21 unidentified_phage(18.18%) transposase NA
DBSCAN-SWA_10 385437 : 438703 54 Staphylococcus_phage(33.33%) integrase,protease,transposase attL 386505:386564|attR 445071:445611
DBSCAN-SWA_11 445350 : 446664 1 Diachasmimorpha_longicaudata_entomopoxvirus(100.0%) NA NA
DBSCAN-SWA_12 454808 : 455633 1 Campylobacter_phage(100.0%) NA NA
DBSCAN-SWA_13 461063 : 586992 102 Tupanvirus(11.11%) transposase,tRNA NA
DBSCAN-SWA_14 592765 : 737606 120 Burkholderia_virus(16.67%) transposase NA
DBSCAN-SWA_15 753245 : 795856 41 Staphylococcus_phage(25.0%) transposase,tRNA NA
DBSCAN-SWA_16 802757 : 938056 113 Staphylococcus_phage(23.81%) transposase NA
DBSCAN-SWA_17 944142 : 997940 50 Burkholderia_virus(20.0%) protease,transposase,tRNA NA
DBSCAN-SWA_18 1015070 : 1067002 46 Staphylococcus_phage(38.46%) transposase NA
DBSCAN-SWA_19 1070883 : 1071939 1 Halovirus(100.0%) NA NA
DBSCAN-SWA_20 1075205 : 1080196 4 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_21 1089645 : 1091709 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_22 1098690 : 1099365 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_23 1118318 : 1168627 45 Organic_Lake_phycodnavirus(16.67%) transposase,tRNA NA
DBSCAN-SWA_24 1172262 : 1211445 37 Acinetobacter_phage(23.08%) protease,transposase NA
DBSCAN-SWA_25 1214808 : 1215051 1 Erythrobacter_phage(100.0%) NA NA
DBSCAN-SWA_26 1226349 : 1227033 1 Harp_seal_herpesvirus(100.0%) NA NA
DBSCAN-SWA_27 1232685 : 1236456 5 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_28 1240226 : 1243417 4 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_29 1255743 : 1389133 110 Acinetobacter_phage(13.64%) transposase,plate,tRNA NA
DBSCAN-SWA_30 1421210 : 1464570 42 Staphylococcus_phage(22.22%) transposase NA
DBSCAN-SWA_31 1472898 : 1530619 51 Staphylococcus_phage(71.43%) transposase NA
DBSCAN-SWA_32 1535787 : 1536291 1 Powai_lake_megavirus(100.0%) NA NA
DBSCAN-SWA_33 1545119 : 1546544 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_34 1554046 : 1589137 39 Escherichia_phage(16.67%) transposase NA
DBSCAN-SWA_35 1592156 : 1593434 1 Stx2-converting_phage(100.0%) NA NA
DBSCAN-SWA_36 1601247 : 1627597 28 Staphylococcus_phage(40.0%) protease,transposase,tRNA NA
DBSCAN-SWA_37 1643434 : 1656242 6 Klosneuvirus(25.0%) NA NA
DBSCAN-SWA_38 1671507 : 1674669 2 Cafeteria_roenbergensis_virus(50.0%) NA NA
DBSCAN-SWA_39 1681665 : 1744549 65 Staphylococcus_phage(33.33%) protease,transposase,tRNA NA
DBSCAN-SWA_40 1750628 : 1800805 43 Erwinia_phage(16.67%) transposase NA
DBSCAN-SWA_41 1821123 : 1822098 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_42 1828655 : 1829612 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_43 1843309 : 1845554 2 Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage(50.0%) tRNA NA
DBSCAN-SWA_44 1855092 : 1915735 57 Acinetobacter_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_45 1925928 : 1927236 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_46 1935325 : 1938019 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_47 1948647 : 1949781 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_48 1972802 : 1975214 1 Bacillus_virus(100.0%) NA NA
DBSCAN-SWA_49 1982124 : 2101083 108 Escherichia_phage(18.18%) protease,transposase,tRNA NA
DBSCAN-SWA_50 2109222 : 2113601 3 Burkholderia_virus(50.0%) NA NA
DBSCAN-SWA_51 2116854 : 2124385 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_52 2135901 : 2136159 1 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_53 2142007 : 2144200 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_54 2170631 : 2301413 113 Acinetobacter_phage(11.11%) protease,tail,transposase,tRNA NA
DBSCAN-SWA_55 2309377 : 2365678 51 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_56 2401282 : 2403988 2 uncultured_Caudovirales_phage(50.0%) transposase NA
DBSCAN-SWA_57 2414290 : 2414839 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_58 2418113 : 2542155 106 Staphylococcus_phage(24.14%) transposase,tRNA NA
DBSCAN-SWA_59 2546835 : 2547468 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_60 2551982 : 2660406 113 Bacillus_phage(16.13%) transposase,tRNA NA
DBSCAN-SWA_61 2665108 : 2872021 167 Staphylococcus_phage(20.59%) protease,transposase,integrase,tRNA attL 2849774:2849833|attR 2865931:2866427
DBSCAN-SWA_62 2876692 : 3019326 119 Staphylococcus_phage(17.86%) protease,transposase,tRNA NA
DBSCAN-SWA_63 3022815 : 3081575 55 unidentified_phage(18.18%) transposase,tRNA NA
DBSCAN-SWA_64 3087818 : 3131935 36 Burkholderia_virus(28.57%) protease,transposase NA
DBSCAN-SWA_65 3155660 : 3160683 6 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_66 3173075 : 3174050 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_67 3178184 : 3179159 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_68 3187025 : 3188498 1 Mycoplasma_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP013782
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1105 : 54773 57 Salmonella_phage(30.43%) portal,transposase,terminase NA
DBSCAN-SWA_2 60428 : 120555 59 Streptococcus_phage(52.17%) transposase NA
DBSCAN-SWA_3 150534 : 160949 10 Streptococcus_phage(62.5%) transposase NA
DBSCAN-SWA_4 174599 : 181097 8 Burkholderia_virus(16.67%) portal,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP013784
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 9021 10 Shewanella_sp._phage(25.0%) transposase NA
DBSCAN-SWA_2 41851 : 47779 6 Choristoneura_rosaceana_entomopoxvirus(25.0%) NA NA
DBSCAN-SWA_3 53484 : 54075 1 Caulobacter_virus(100.0%) integrase attL 51765:51795|attR 56087:56117
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. NZ_CP013783
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2996 4 Shigella_phage(33.33%) tail,capsid,transposase,head NA
DBSCAN-SWA_2 6446 : 10086 5 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_3 19121 : 23078 5 Brucella_phage(33.33%) transposase NA
DBSCAN-SWA_4 26548 : 46003 17 unidentified_phage(30.0%) tail,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage