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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013789 Piscirickettsia salmonis strain PM58386B plasmid p3PS7, complete sequence 0 crisprs NA 0 0 3 0
NZ_CP013786 Piscirickettsia salmonis strain PM58386B, complete genome 2 crisprs cas3,DinG,csa3,DEDDh 0 0 74 0
NZ_CP013790 Piscirickettsia salmonis strain PM58386B plasmid p4PS7, complete sequence 0 crisprs NA 0 0 2 0
NZ_CP013788 Piscirickettsia salmonis strain PM58386B plasmid p2PS7, complete sequence 0 crisprs NA 0 0 4 0
NZ_CP013787 Piscirickettsia salmonis strain PM58386B plasmid p1PS7, complete sequence 0 crisprs NA 0 0 4 0

Results visualization

1. NZ_CP013789
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 9031 9 Shewanella_sp._phage(25.0%) transposase NA
DBSCAN-SWA_2 41863 : 47791 6 Choristoneura_rosaceana_entomopoxvirus(25.0%) NA NA
DBSCAN-SWA_3 53496 : 54087 1 Caulobacter_virus(100.0%) integrase attL 51777:51807|attR 56099:56129
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP013786
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013786_1 442753-442862 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013786_2 3077554-3077649 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 69795 57 uncultured_Mediterranean_phage(26.67%) transposase,tRNA NA
DBSCAN-SWA_2 74864 : 83707 12 Acinetobacter_phage(50.0%) transposase NA
DBSCAN-SWA_3 94296 : 95010 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_4 138634 : 139933 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_5 143380 : 195763 47 Vibrio_phage(13.33%) transposase,tRNA NA
DBSCAN-SWA_6 206462 : 274489 62 Burkholderia_phage(17.65%) transposase,tRNA,protease NA
DBSCAN-SWA_7 277847 : 279841 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_8 290257 : 291232 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_9 323509 : 330368 5 Hokovirus(33.33%) NA NA
DBSCAN-SWA_10 340890 : 341613 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_11 349588 : 494341 136 Staphylococcus_phage(18.92%) transposase,tRNA,protease,integrase attL 369615:369674|attR 476042:477146
DBSCAN-SWA_12 505339 : 632932 107 Acinetobacter_phage(11.76%) transposase,tRNA NA
DBSCAN-SWA_13 644438 : 648091 3 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_14 662687 : 712973 39 Staphylococcus_phage(28.57%) transposase NA
DBSCAN-SWA_15 717476 : 776187 54 Burkholderia_virus(28.57%) transposase,tRNA NA
DBSCAN-SWA_16 783717 : 787544 4 Micromonas_sp._RCC1109_virus(50.0%) NA NA
DBSCAN-SWA_17 793689 : 860048 48 Burkholderia_virus(22.22%) transposase NA
DBSCAN-SWA_18 863440 : 864688 1 Phage_21(100.0%) NA NA
DBSCAN-SWA_19 871084 : 922163 46 Acinetobacter_phage(27.27%) transposase NA
DBSCAN-SWA_20 934385 : 989186 50 Staphylococcus_phage(20.0%) transposase,tRNA,protease NA
DBSCAN-SWA_21 997953 : 1050588 45 Staphylococcus_phage(41.67%) transposase NA
DBSCAN-SWA_22 1055223 : 1058987 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_23 1071139 : 1072195 1 Halovirus(100.0%) NA NA
DBSCAN-SWA_24 1075461 : 1080452 4 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_25 1089900 : 1091964 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_26 1098945 : 1099620 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_27 1118573 : 1168881 45 Organic_Lake_phycodnavirus(16.67%) transposase,tRNA NA
DBSCAN-SWA_28 1172515 : 1211700 36 Acinetobacter_phage(28.57%) transposase,protease NA
DBSCAN-SWA_29 1215063 : 1215306 1 Erythrobacter_phage(100.0%) NA NA
DBSCAN-SWA_30 1226605 : 1227289 1 Harp_seal_herpesvirus(100.0%) NA NA
DBSCAN-SWA_31 1232942 : 1236713 5 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_32 1240483 : 1243674 4 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_33 1256000 : 1389392 113 Acinetobacter_phage(13.64%) transposase,plate,tRNA NA
DBSCAN-SWA_34 1421470 : 1464830 42 Staphylococcus_phage(22.22%) transposase NA
DBSCAN-SWA_35 1473159 : 1530880 51 Staphylococcus_phage(71.43%) transposase NA
DBSCAN-SWA_36 1536047 : 1536551 1 Powai_lake_megavirus(100.0%) NA NA
DBSCAN-SWA_37 1545380 : 1546805 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_38 1554307 : 1589398 39 Escherichia_phage(16.67%) transposase NA
DBSCAN-SWA_39 1592417 : 1593695 1 Stx2-converting_phage(100.0%) NA NA
DBSCAN-SWA_40 1601509 : 1627860 29 Staphylococcus_phage(40.0%) transposase,tRNA,protease NA
DBSCAN-SWA_41 1643697 : 1656505 6 Klosneuvirus(25.0%) NA NA
DBSCAN-SWA_42 1671770 : 1674932 2 Cafeteria_roenbergensis_virus(50.0%) NA NA
DBSCAN-SWA_43 1681928 : 1684314 3 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_44 1690199 : 1695049 5 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_45 1701446 : 1703350 2 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_46 1711521 : 1822368 102 Staphylococcus_phage(13.33%) transposase,tRNA,protease NA
DBSCAN-SWA_47 1828925 : 1829882 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_48 1843578 : 1845823 2 Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage(50.0%) tRNA NA
DBSCAN-SWA_49 1855361 : 1916006 57 Acinetobacter_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_50 1926199 : 1927507 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_51 1935596 : 1938290 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_52 1948918 : 1950052 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_53 1973075 : 1977756 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_54 1982398 : 2101358 109 Escherichia_phage(18.18%) transposase,tRNA,protease NA
DBSCAN-SWA_55 2109498 : 2113877 3 Burkholderia_virus(50.0%) NA NA
DBSCAN-SWA_56 2117130 : 2124661 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_57 2136465 : 2136723 1 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_58 2142571 : 2144764 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_59 2171195 : 2306669 115 Acinetobacter_phage(10.53%) tail,transposase,tRNA,protease NA
DBSCAN-SWA_60 2309992 : 2366295 51 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_61 2401900 : 2404606 2 uncultured_Caudovirales_phage(50.0%) transposase NA
DBSCAN-SWA_62 2414908 : 2415457 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_63 2418731 : 2542774 106 Staphylococcus_phage(24.14%) transposase,tRNA NA
DBSCAN-SWA_64 2547454 : 2548087 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_65 2552601 : 2661027 113 Bacillus_phage(16.13%) transposase,tRNA NA
DBSCAN-SWA_66 2665729 : 2729736 51 Staphylococcus_phage(37.5%) transposase,tRNA NA
DBSCAN-SWA_67 2733546 : 2872642 116 Staphylococcus_phage(14.81%) transposase,integrase,protease attL 2850396:2850455|attR 2866552:2867048
DBSCAN-SWA_68 2877313 : 3019949 119 Staphylococcus_phage(17.86%) transposase,tRNA,protease NA
DBSCAN-SWA_69 3023438 : 3082200 56 unidentified_phage(18.18%) transposase,tRNA NA
DBSCAN-SWA_70 3088443 : 3134126 37 Burkholderia_virus(25.0%) transposase,protease NA
DBSCAN-SWA_71 3156288 : 3161311 6 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_72 3173703 : 3174678 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_73 3178815 : 3179790 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_74 3184221 : 3189130 3 Klosneuvirus(50.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP013790
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 16246 19 unidentified_phage(33.33%) terminase,transposase,integrase,capsid attL 1:60|attR 22832:23588
DBSCAN-SWA_2 20504 : 31348 12 unidentified_phage(50.0%) transposase,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP013788
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2996 4 Shigella_phage(33.33%) capsid,tail,head,transposase NA
DBSCAN-SWA_2 6446 : 10086 5 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_3 19121 : 23078 5 Brucella_phage(33.33%) transposase NA
DBSCAN-SWA_4 26548 : 50229 25 unidentified_phage(23.08%) tail,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. NZ_CP013787
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1110 : 54779 57 Salmonella_phage(30.43%) portal,terminase,transposase NA
DBSCAN-SWA_2 60435 : 122515 59 Streptococcus_phage(54.17%) transposase NA
DBSCAN-SWA_3 150640 : 161055 10 Streptococcus_phage(62.5%) transposase NA
DBSCAN-SWA_4 174705 : 181203 8 Burkholderia_virus(16.67%) portal,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage