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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013797 Piscirickettsia salmonis strain AY6532B plasmid p1PS9, complete sequence 0 crisprs NA 0 0 4 0
NZ_CP013799 Piscirickettsia salmonis strain AY6532B plasmid p3PS9, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP013800 Piscirickettsia salmonis strain AY6532B plasmid p4PS9, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP013798 Piscirickettsia salmonis strain AY6532B plasmid p2PS9, complete sequence 0 crisprs NA 0 0 2 0
NZ_CP013796 Piscirickettsia salmonis strain AY6532B, complete genome 2 crisprs DEDDh,csa3,DinG,cas3 0 0 35 0

Results visualization

1. NZ_CP013797
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 60661 58 unidentified_phage(16.67%) head,transposase,integrase,portal,capsid,tail attL 56346:56405|attR 66858:67146
DBSCAN-SWA_2 64837 : 129245 60 Streptococcus_phage(48.15%) integrase,transposase,portal attL 72373:72432|attR 112015:112935
DBSCAN-SWA_3 135484 : 140255 7 uncultured_Mediterranean_phage(25.0%) NA NA
DBSCAN-SWA_4 144391 : 188070 50 Streptococcus_phage(37.5%) transposase,terminase,portal NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP013796
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013796_1 2279076-2279186 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013796_2 2835439-2835534 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 37745 : 69420 28 Staphylococcus_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_2 81102 : 130168 54 Bacillus_phage(35.71%) tRNA,transposase NA
DBSCAN-SWA_3 140054 : 189159 50 Staphylococcus_phage(21.43%) tRNA,transposase NA
DBSCAN-SWA_4 209182 : 257675 43 Staphylococcus_phage(45.45%) tRNA,transposase NA
DBSCAN-SWA_5 322679 : 375718 46 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_6 390281 : 444542 51 Staphylococcus_phage(37.5%) transposase NA
DBSCAN-SWA_7 452127 : 519070 55 Bodo_saltans_virus(14.29%) tRNA,tail,transposase NA
DBSCAN-SWA_8 629268 : 744782 106 Escherichia_phage(19.05%) tRNA,protease,transposase NA
DBSCAN-SWA_9 779678 : 838960 53 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_10 871068 : 990215 104 Staphylococcus_phage(11.76%) tRNA,protease,transposase NA
DBSCAN-SWA_11 1064009 : 1106368 54 Chrysochromulina_ericina_virus(20.0%) transposase NA
DBSCAN-SWA_12 1115791 : 1170702 60 uncultured_Caudovirales_phage(20.0%) tRNA,protease,transposase NA
DBSCAN-SWA_13 1244989 : 1291956 44 Streptococcus_phage(33.33%) transposase NA
DBSCAN-SWA_14 1331462 : 1465129 109 Staphylococcus_phage(13.64%) tRNA,plate,transposase NA
DBSCAN-SWA_15 1473771 : 1520070 50 Staphylococcus_phage(21.43%) plate,transposase NA
DBSCAN-SWA_16 1528230 : 1582539 50 Prochlorococcus_phage(37.5%) tRNA,protease,transposase NA
DBSCAN-SWA_17 1626219 : 1688954 54 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_18 1692856 : 1759817 56 Bacillus_phage(22.22%) tRNA,protease,transposase NA
DBSCAN-SWA_19 1765430 : 1827658 57 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_20 1836357 : 1897163 49 Acinetobacter_phage(20.0%) transposase NA
DBSCAN-SWA_21 1911757 : 1952862 41 Staphylococcus_phage(28.57%) transposase NA
DBSCAN-SWA_22 1964686 : 2025334 55 Staphylococcus_phage(40.0%) tRNA,transposase NA
DBSCAN-SWA_23 2030745 : 2097143 55 Staphylococcus_phage(20.0%) transposase NA
DBSCAN-SWA_24 2128359 : 2176969 38 Bacillus_thuringiensis_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_25 2181266 : 2367891 168 Staphylococcus_phage(19.51%) tRNA,protease,integrase,transposase attL 2288694:2288753|attR 2316158:2317152
DBSCAN-SWA_26 2426220 : 2516531 85 Burkholderia_phage(14.29%) tRNA,protease,transposase NA
DBSCAN-SWA_27 2527230 : 2577715 46 Vibrio_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_28 2637917 : 2646760 12 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_29 2651829 : 2728870 60 uncultured_Mediterranean_phage(29.41%) tRNA,transposase NA
DBSCAN-SWA_30 2733301 : 2782166 45 Staphylococcus_phage(25.0%) transposase NA
DBSCAN-SWA_31 2801865 : 2867678 59 Burkholderia_virus(10.0%) tRNA,protease,transposase NA
DBSCAN-SWA_32 2876786 : 2925807 52 unidentified_phage(15.38%) tRNA,protease,transposase NA
DBSCAN-SWA_33 2944868 : 2993091 41 Staphylococcus_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_34 3005968 : 3066936 47 Staphylococcus_phage(30.0%) integrase,transposase attL 3013821:3013880|attR 3064242:3065002
DBSCAN-SWA_35 3087777 : 3115430 28 Staphylococcus_phage(25.0%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP013798
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 52923 56 Choristoneura_rosaceana_entomopoxvirus(12.5%) integrase,transposase attL 48860:48890|attR 53182:53212
DBSCAN-SWA_2 57197 : 58903 2 Brevibacillus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP013799
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 211 : 16225 21 unidentified_phage(38.46%) integrase,head,tail,transposase,terminase,capsid attL 9079:9138|attR 25457:25745
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage