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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP013809 Piscirickettsia salmonis strain PM31429B plasmid p3PS12, complete sequence 0 crisprs NA 0 0 3 0
NZ_CP013810 Piscirickettsia salmonis strain PM31429B plasmid p4PS12, complete sequence 0 crisprs NA 0 0 2 0
NZ_CP013807 Piscirickettsia salmonis strain PM31429B plasmid p1PS12, complete sequence 0 crisprs NA 0 0 4 0
NZ_CP013808 Piscirickettsia salmonis strain PM31429B plasmid p2PS12, complete sequence 0 crisprs NA 0 0 4 0
NZ_CP013806 Piscirickettsia salmonis strain PM31429B, complete genome 2 crisprs cas3,DinG,csa3,DEDDh 0 0 71 0

Results visualization

1. NZ_CP013807
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1105 : 54774 57 Salmonella_phage(30.43%) terminase,portal,transposase NA
DBSCAN-SWA_2 60431 : 120560 59 Streptococcus_phage(52.17%) transposase NA
DBSCAN-SWA_3 150542 : 160957 10 Streptococcus_phage(62.5%) transposase NA
DBSCAN-SWA_4 174607 : 181105 8 Burkholderia_virus(16.67%) portal,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP013810
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 16250 18 unidentified_phage(27.27%) terminase,capsid,transposase,integrase attL 1:60|attR 22836:23592
DBSCAN-SWA_2 20508 : 31352 12 unidentified_phage(50.0%) transposase,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP013808
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 2996 4 Shigella_phage(33.33%) capsid,tail,transposase,head NA
DBSCAN-SWA_2 6446 : 10086 5 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_3 19121 : 23078 5 Brucella_phage(33.33%) transposase NA
DBSCAN-SWA_4 26548 : 50229 25 unidentified_phage(23.08%) transposase,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP013809
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 9028 10 Shewanella_sp._phage(25.0%) transposase NA
DBSCAN-SWA_2 41860 : 47788 6 Choristoneura_rosaceana_entomopoxvirus(25.0%) NA NA
DBSCAN-SWA_3 53493 : 54084 1 Caulobacter_virus(100.0%) integrase attL 51774:51804|attR 56096:56126
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. NZ_CP013806
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013806_1 442568-442677 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP013806_2 3077036-3077131 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 69796 58 uncultured_Mediterranean_phage(26.67%) transposase,tRNA NA
DBSCAN-SWA_2 74865 : 83708 12 Acinetobacter_phage(50.0%) transposase NA
DBSCAN-SWA_3 94297 : 95011 1 Cyanophage(100.0%) NA NA
DBSCAN-SWA_4 138445 : 139744 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_5 143191 : 195575 47 Vibrio_phage(13.33%) transposase,tRNA NA
DBSCAN-SWA_6 206274 : 274302 63 Burkholderia_phage(16.67%) transposase,tRNA,protease NA
DBSCAN-SWA_7 277660 : 279654 2 uncultured_Mediterranean_phage(50.0%) NA NA
DBSCAN-SWA_8 290070 : 291045 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_9 323322 : 330181 5 Hokovirus(33.33%) NA NA
DBSCAN-SWA_10 340703 : 341426 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_11 349401 : 494156 136 Staphylococcus_phage(18.92%) integrase,transposase,tRNA,protease attL 369429:369488|attR 475857:476961
DBSCAN-SWA_12 505154 : 632747 107 Acinetobacter_phage(11.76%) transposase,tRNA NA
DBSCAN-SWA_13 644253 : 647906 3 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_14 662502 : 776001 97 Staphylococcus_phage(23.08%) transposase,tRNA NA
DBSCAN-SWA_15 783531 : 787358 4 Micromonas_sp._RCC1109_virus(50.0%) NA NA
DBSCAN-SWA_16 793503 : 859863 49 Burkholderia_virus(22.22%) transposase NA
DBSCAN-SWA_17 863255 : 864503 1 Phage_21(100.0%) NA NA
DBSCAN-SWA_18 870899 : 921978 46 Acinetobacter_phage(27.27%) transposase NA
DBSCAN-SWA_19 934200 : 989002 49 Staphylococcus_phage(20.0%) transposase,tRNA,protease NA
DBSCAN-SWA_20 997769 : 1050390 45 Staphylococcus_phage(41.67%) transposase NA
DBSCAN-SWA_21 1055025 : 1058789 2 Streptococcus_phage(50.0%) NA NA
DBSCAN-SWA_22 1070942 : 1071998 1 Halovirus(100.0%) NA NA
DBSCAN-SWA_23 1075264 : 1080255 4 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_24 1089704 : 1091768 1 Catovirus(100.0%) tRNA NA
DBSCAN-SWA_25 1098749 : 1099424 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_26 1118377 : 1168686 45 Organic_Lake_phycodnavirus(16.67%) transposase,tRNA NA
DBSCAN-SWA_27 1172321 : 1211506 36 Acinetobacter_phage(28.57%) transposase,protease NA
DBSCAN-SWA_28 1214869 : 1215112 1 Erythrobacter_phage(100.0%) NA NA
DBSCAN-SWA_29 1226411 : 1227095 1 Harp_seal_herpesvirus(100.0%) NA NA
DBSCAN-SWA_30 1232747 : 1236518 5 Planktothrix_phage(33.33%) NA NA
DBSCAN-SWA_31 1240288 : 1243479 4 Paramecium_bursaria_Chlorella_virus(50.0%) NA NA
DBSCAN-SWA_32 1255805 : 1389199 112 Acinetobacter_phage(13.64%) transposase,tRNA,plate NA
DBSCAN-SWA_33 1421278 : 1464638 42 Staphylococcus_phage(22.22%) transposase NA
DBSCAN-SWA_34 1472967 : 1530689 51 Staphylococcus_phage(71.43%) transposase NA
DBSCAN-SWA_35 1535857 : 1536361 1 Powai_lake_megavirus(100.0%) NA NA
DBSCAN-SWA_36 1545190 : 1546615 1 Synechococcus_phage(100.0%) NA NA
DBSCAN-SWA_37 1554117 : 1589207 39 Escherichia_phage(16.67%) transposase NA
DBSCAN-SWA_38 1592226 : 1593504 1 Stx2-converting_phage(100.0%) NA NA
DBSCAN-SWA_39 1601318 : 1627669 29 Staphylococcus_phage(40.0%) transposase,tRNA,protease NA
DBSCAN-SWA_40 1643506 : 1656314 6 Klosneuvirus(25.0%) NA NA
DBSCAN-SWA_41 1671579 : 1674741 2 Cafeteria_roenbergensis_virus(50.0%) NA NA
DBSCAN-SWA_42 1681737 : 1744623 65 Staphylococcus_phage(33.33%) transposase,tRNA,protease NA
DBSCAN-SWA_43 1750702 : 1800881 43 Erwinia_phage(16.67%) transposase NA
DBSCAN-SWA_44 1821201 : 1822176 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_45 1828733 : 1829690 1 Enterobacteria_phage(100.0%) NA NA
DBSCAN-SWA_46 1843387 : 1845632 2 Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage(50.0%) tRNA NA
DBSCAN-SWA_47 1855170 : 1915815 57 Acinetobacter_phage(33.33%) transposase,tRNA NA
DBSCAN-SWA_48 1926008 : 1927316 1 Moraxella_phage(100.0%) NA NA
DBSCAN-SWA_49 1935405 : 1938099 1 uncultured_Caudovirales_phage(100.0%) NA NA
DBSCAN-SWA_50 1948727 : 1949861 1 Diadromus_pulchellus_ascovirus(100.0%) NA NA
DBSCAN-SWA_51 1972884 : 1977565 3 Bacillus_virus(50.0%) NA NA
DBSCAN-SWA_52 1982207 : 2101167 109 Escherichia_phage(18.18%) transposase,tRNA,protease NA
DBSCAN-SWA_53 2109307 : 2113686 3 Burkholderia_virus(50.0%) NA NA
DBSCAN-SWA_54 2116939 : 2124470 4 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_55 2135986 : 2136244 1 Rhizobium_phage(100.0%) NA NA
DBSCAN-SWA_56 2142092 : 2144285 1 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_57 2170717 : 2306144 115 Acinetobacter_phage(10.53%) transposase,tRNA,protease,tail NA
DBSCAN-SWA_58 2309467 : 2365770 51 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_59 2401375 : 2404081 2 uncultured_Caudovirales_phage(50.0%) transposase NA
DBSCAN-SWA_60 2414383 : 2414932 1 Klosneuvirus(100.0%) NA NA
DBSCAN-SWA_61 2418206 : 2542250 106 Staphylococcus_phage(24.14%) transposase,tRNA NA
DBSCAN-SWA_62 2546930 : 2547563 1 Indivirus(100.0%) NA NA
DBSCAN-SWA_63 2552077 : 2660504 112 Bacillus_phage(16.13%) transposase,tRNA NA
DBSCAN-SWA_64 2665206 : 2872121 169 Staphylococcus_phage(20.0%) integrase,transposase,tRNA,protease attL 2849874:2849933|attR 2866031:2866527
DBSCAN-SWA_65 2876792 : 3019431 118 Staphylococcus_phage(17.86%) transposase,tRNA,protease NA
DBSCAN-SWA_66 3022920 : 3081682 56 unidentified_phage(18.18%) transposase,tRNA NA
DBSCAN-SWA_67 3087925 : 3133608 37 Burkholderia_virus(25.0%) transposase,protease NA
DBSCAN-SWA_68 3155770 : 3160793 6 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_69 3173185 : 3174160 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_70 3178297 : 3179272 1 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_71 3183703 : 3188612 3 Klosneuvirus(50.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage