CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007223	Thermosipho sp. 1063, complete genome	4 crisprs	cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10,csx1,cas2,cas1,cas3,WYL,cas10d,csc2gr7,csc1gr5,DEDDh,cmr6gr7,cmr5gr11,cmr4gr7,csm6,cmr3gr5,cmr1gr7,csa3,cas3HD,PrimPol	0	18	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007223_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007223_1

125563-126130

TypeIII

Consensus_repeat	Method
GTTTCCATTCCTCATAGGTATGTTCTAAAC	CRISPRCasFinder
GTTTCCATTCCTCATAGGTATGTTCTAAAC	CRT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	PILER-CR

8 spacers

cas2,cas1,csx1,cas10,csm2gr11

The CRISPR arrays of NZ_CP007223_1

>merge|NZ_CP007223|1|125563-126130|CRISPRCasFinder,CRT,PILER-CR
CATCCCATTCCTCATAGGTATGTTCTAAACCTTGCATGGAAGAAACGGATGTGCTGCGGTGGGAGCGGTTTCCATTCCTCATAGGTATGTTCTAAACGTGATTAAAGCTATTAAAGGAAAGGGTAGTCTTTTATTGTTTCCATTCCTCATAGGTATGTTCTAAACCGGCTAAAATCAACGAACACATTGCCAGAAGCAATTTTGGGTTTCCATTCCTCATAGGTATGTTCTAAACGAAAATATGGAAAGATATCTAAAAACAAGATTTCATGGTTTCCATTCCTCATAGGTATGTTCTAAACGAGATATTATGGAAATCATGGTGAAATATGTAAACTGTTGTTTCCATTCCTCATAGGTATGTTCTAAACTAAAATCACTAGATTAATATAACAAGGAGGGGTTCTAAGTTTCCATTCCTCATAGGTATGTTCTAAACAATATCAGAAATATTAAAACAATATATGGAAGACGGTTTCCATTCCTCATAGGTATGTTCTAAACTTAACATGGAGAAAGAGCGTGAAGATAAGTCAAAGTTTCCATTCCTCATAGGTATGTTCTAAAC

>NZ_CP007223|1|1|125563-126130|CRISPRCasFinder
CATCCCATTCCTCATAGGTATGTTCTAAAC	CTTGCATGGAAGAAACGGATGTGCTGCGGTGGGAGCG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GTGATTAAAGCTATTAAAGGAAAGGGTAGTCTTTTATT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	CGGCTAAAATCAACGAACACATTGCCAGAAGCAATTTTGG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAAATATGGAAAGATATCTAAAAACAAGATTTCATG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAGATATTATGGAAATCATGGTGAAATATGTAAACTGTT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TAAAATCACTAGATTAATATAACAAGGAGGGGTTCTAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AATATCAGAAATATTAAAACAATATATGGAAGACG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TTAACATGGAGAAAGAGCGTGAAGATAAGTCAAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC

>NZ_CP007223|1|1|125563-126130|CRT
CATCCCATTCCTCATAGGTATGTTCTAAAC	CTTGCATGGAAGAAACGGATGTGCTGCGGTGGGAGCG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GTGATTAAAGCTATTAAAGGAAAGGGTAGTCTTTTATT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	CGGCTAAAATCAACGAACACATTGCCAGAAGCAATTTTGG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAAATATGGAAAGATATCTAAAAACAAGATTTCATG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAGATATTATGGAAATCATGGTGAAATATGTAAACTGTT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TAAAATCACTAGATTAATATAACAAGGAGGGGTTCTAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AATATCAGAAATATTAAAACAATATATGGAAGACG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TTAACATGGAGAAAGAGCGTGAAGATAAGTCAAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC

>NZ_CP007223|1|1|125630-126130|PILER-CR
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GTGATTAAAGCTATTAAAGGAAAGGGTAGTCTTTTATT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	CGGCTAAAATCAACGAACACATTGCCAGAAGCAATTTTGG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAAATATGGAAAGATATCTAAAAACAAGATTTCATG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAGATATTATGGAAATCATGGTGAAATATGTAAACTGTT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TAAAATCACTAGATTAATATAACAAGGAGGGGTTCTAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AATATCAGAAATATTAAAACAATATATGGAAGACG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TTAACATGGAGAAAGAGCGTGAAGATAAGTCAAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007223.1\|WP_075665151.1\|122028_122781_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007223.1\|WP_075665162.1\|134829_135768_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP007223.1\|WP_075666665.1\|123931_124201_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP007223.1\|WP_075665164.1\|136425_137070_-\|phosphate-signaling-complex-protein-PhoU	unknown	unknown	gnl\|CDD\|273990
NZ_CP007223.1\|WP_075665160.1\|132522_133734_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340823
NZ_CP007223.1\|WP_075665149.1\|119224_120586_-\|TIGR01897-family-CRISPR-associated-protein	csx1	cd09728_csx1_CAS-III	gnl\|CDD\|187859
NZ_CP007223.1\|WP_075665159.1\|130951_132190_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270453
NZ_CP007223.1\|WP_075665152.1\|122805_123474_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007223.1\|WP_077286977.1\|123481_123883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP007223.1\|WP_075665156.1\|126921_127710_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293799
NZ_CP007223.1\|WP_075665163.1\|135754_136429_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP007223.1\|WP_075666666.1\|127757_129140_-\|peptide-amidase	unknown	unknown	gnl\|CDD\|180715
NZ_CP007223.1\|WP_075665155.1\|125202_125466_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP007223.1\|WP_075665158.1\|130018_130900_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP007223.1\|WP_075665157.1\|129166_130006_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP007223.1\|WP_077286968.1\|116526_116940_-\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NZ_CP007223.1\|WP_075665154.1\|124205_125192_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
NZ_CP007223.1\|WP_077286971.1\|116941_119209_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP007223.1\|WP_075665161.1\|133733_134849_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP007223.1\|WP_075665150.1\|120582_122025_-\|SAVED-domain-containing-protein	unknown	unknown	gnl\|CDD\|380122

Protein	Function_ID	Function_description	E-value
NZ_CP007223.1\|WP_075665162.1\|134829_135768_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.83987e-39
NZ_CP007223.1\|WP_075666665.1\|123931_124201_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.18624e-23
NZ_CP007223.1\|WP_075665164.1\|136425_137070_-\|phosphate-signaling-complex-protein-PhoU	gnl\|CDD\|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	5.19643e-50
NZ_CP007223.1\|WP_075665160.1\|132522_133734_+\|glycosyltransferase	gnl\|CDD\|340823	cd03792, GT4_trehalose_phosphorylase, trehalose phosphorylase and similar proteins. Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT4 family of glycosyltransferases.	3.45361e-135
NZ_CP007223.1\|WP_075665149.1\|119224_120586_-\|TIGR01897-family-CRISPR-associated-protein	gnl\|CDD\|187859	cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as DxTHG family.	3.58526e-32
NZ_CP007223.1\|WP_075665159.1\|130951_132190_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270453	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold. This group represents the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.42591e-176
NZ_CP007223.1\|WP_075665156.1\|126921_127710_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293799	cd07713, DHPS-like_MBL-fold, Methanocaldococcus jannaschii dihydropteroate synthase, Thermoanaerobacter tengcongensis Tflp, and related proteins; MBL-fold metallo hydrolase domain. This subgroup includes Methanocaldococcus jannaschii 7,8-dihydropterin-6-methyl-4-(beta-D-ribofuranosyl)-aminobenzene-5'-phosphate synthase (EC 2.5.1.15), a folate biosynthetic enzyme also known as dihydropteroate synthase and 7,8 dihydropteroate synthase. Thermoanaerobacter tengcongensis Tflp is a ferredoxin-like member. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	7.68687e-89
NZ_CP007223.1\|WP_075665163.1\|135754_136429_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	8.66613e-72
NZ_CP007223.1\|WP_075665150.1\|120582_122025_-\|SAVED-domain-containing-protein	gnl\|CDD\|380122	pfam18145, SAVED, SMODS-associated and fused to various effectors sensor domain. Predicted to function as a sensor domain, sensing nucleotides or nucleotide derivatives generated by SMODS and other nucleotide synthetase domains. The sensing of ligands by SAVED is predicted to activate effectors deployed by a class of conflict systems which are reliant on the on the production and sensing of the nucleotide second messengers.	8.38902e-15
NZ_CP007223.1\|WP_075665155.1\|125202_125466_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	6.77992e-23
NZ_CP007223.1\|WP_077286968.1\|116526_116940_-\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	1.22141e-14
NZ_CP007223.1\|WP_075665157.1\|129166_130006_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.60827e-91
NZ_CP007223.1\|WP_075665158.1\|130018_130900_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.6622e-82
NZ_CP007223.1\|WP_075665154.1\|124205_125192_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.287e-129
NZ_CP007223.1\|WP_077286971.1\|116941_119209_-\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	2.40779e-119
NZ_CP007223.1\|WP_075665161.1\|133733_134849_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	7.4487e-37
NZ_CP007223.1\|WP_075666666.1\|127757_129140_-\|peptide-amidase	gnl\|CDD\|180715	PRK06828, PRK06828, amidase; Provisional.	4.22841e-168

>NZ_CP007223.1|WP_075665155.1|125202_125466_-|CRISPR-associated-endonuclease-Cas2
MYVIMIYDVNRKRVSKVLRIARKYLRWVQRSVFEGRITEKDFNELRMEIQNIIVENEDSIYWYILKKEFVPYRHYIGEPKSTISSII
>NZ_CP007223.1|WP_075665154.1|124205_125192_-|type-I-B-CRISPR-associated-endonuclease-Cas1
METLYVFTDGEIRKKNNAMYLIPKSEEKKPMIVPLKNVSSIMIFSEVSINKRFLEMLCKEEIPLHFFGYYGNYLGTFYPREKNKTGKTLLLQFEHYNDMEKRILIAKEILKAAVHNMLKVLRNFKKLVYDEILYVEKIKSTLDKQTNIPALMAIEGNIRKRYYKAFGKIVGKKDFSFEERKRKPPKDEINALISYGNTILYNIVLSEIYKTSLEPQISFLHEPKNKKFSLQLDISEIFKPIIVDKVILYLVNNKIVQKSDFEPISDGIYLSKEGKKKFVLELEKRLEKTVEIYPNQKVSFKTVILHECYKLIRHLKGEENYRGFRDRG
>NZ_CP007223.1|WP_075666665.1|123931_124201_-|CRISPR-associated-endonuclease-Cas2
MRYILLTYDVNEKRVSRVHKIVKEYLVWQQNSTFEGKITQSNLKQLIGRLKRVIDERKDSVVIYYFNSSAVFNKEVDGKVKWIVSNNLL
>NZ_CP007223.1|WP_077286977.1|123481_123883_-|hypothetical-protein
MIDEIFKTENEFKRYFKSVIGIMTGLRKFSKIVKTQSLWRSKERPRTNRPVFVEYLENNTCRLLFLSTKNYSKIKIDIRRECSVSKECNLNKMSYAFKEKGKFIFDGIPREIVDKYFKKCGVCKKNLDDFLKG
>NZ_CP007223.1|WP_075665152.1|122805_123474_-|hypothetical-protein
MKKDLFRKELLNYIINNKVSEKFLNSVKGIVISIISKNKTYQSGIKACYGSIEDAINEISNDILIKIRNKAHIFKNLSDNHGAYLYTMIKNHIVDILRNYRFNISLDNESDDFENRIEYFFHSEDLNDSLSDSSETVVVAQYFFKELCKMNDEYLCFYLYKVSRSEEICFSEKTKNAKYKIIQRTKEKLKKLVQENGITEKEFLLAIRIYMSEICEKLRNNK
>NZ_CP007223.1|WP_075665151.1|122028_122781_-|hypothetical-protein
MNFLKSELELYEEYNKEFKADFIEINNGSRLVAGDIFVIYTTKYPIYGVIVSKTDDLNEAVYLTTEPFLASSTATRLKINHLVLTVILTHMKFYFDDEFSDKYCEFIKHVDVEEIVENYNILASEVYSGPRKEFFSLEAKKIEKLYELFFEKIVYDDSNEVCIEFPEELKRHEEILAADTDGVKGENYVGIIKGKSLIIYLDDSLLEKKVKVFYDGRELFNGVVHDHIKITNIDGLTKEEIEKNLKISEV
>NZ_CP007223.1|WP_075665150.1|120582_122025_-|SAVED-domain-containing-protein
MYTNILKQNIEDFVLLVKKDLISLNEAVDSYLKCEDFPQKSFVLYEIIKKILETKKTSSIELLIKLLNDDLTVLNLYRNGYNEVRFPIVNDSGNGKIARAIVFKNEKTYVNLEGFTDKIKIIEKIVQKNLGVIFDSHFTGNSFMLAITMGGLTSKIPKNVAFTGEVDSDGSILKNIRNLHFKESVCEEENMKLISALDVNNVFELKDFFEAKEYHVPVLFVFQKRDEEFVDNSYEKLKEKVGEKFPLNFVDIFEKLYDFKKTYVSDEIKNNEWKKVLKDARKVLNSIISNNGIPHIAIVGPVAMAMALGVTLGTHNKLVFYHHQDGEYHRVLDLTDNVRKVKSITEDYRFVKYTVEGEGKDCSYVLYFASHNPIQDVRKFLLNNNISSKKILIEHKDNKGNIKPGDWTKIVSEIMSITQNIRTCTSCENVHFFISAPLPIAFGLGMAYGDFSKGGIYQLDKETGSYIKAFEIENIRGDGI
>NZ_CP007223.1|WP_075665149.1|119224_120586_-|TIGR01897-family-CRISPR-associated-protein
MKILLMPLGNIRTYKNSVFYRFEQSNNYDFLPNLLINEFNIDKVMIFVLDTLYPSLTDEQPKNYNEMEDFLIKKYSEYFSSHSEFENFEIKVVPGVGTFRNRKDMEYRFKGTITDLYYLNLYYFYNLFKDLNINDDLEVYLDITFGINYHTNMLYSSLIDLLQLISFIKPVKFVVTNSESPFSREEKNILFVHKIEEKRIIPFLNIKDFQGEKIFGFSSFVDNQEKRIIGKNRLNDFYRELKKSEVINKSRIFLKSIYYGFPLVFSTMLKKVDFNKIILKGIEIYKDVLDIENGVDKEIVKRKLAITPSFKGIIFSSIFSKLFVKLFDEYDEKIHLKDEYPIDYLESISNFVWKINEEGNYINVFSALSIKKELSDIRNYAKGLPEGEIIYTKSKDNENKQSKQIYSKIYSNEKRNFLAHAGLSNRTFKIKKTKSDILIVPQMENILGNFKDI
>NZ_CP007223.1|WP_077286971.1|116941_119209_-|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MMELTVEKVFLASIFHDIGKFYQRAEINSLKKIIAETYRYSIESSKSYSPRHQEWGAYFYKNSGLPYKDEIEGVILNHHSPINLLSELVQLADHVSANEREDYSSSENKRVKNMVSILSLVSLKDNKKNKKYKRVSRLSEFKELIDREEENIKLSYKNLWNEFEEQVKNIVREHKNTEELDITDPFYEKIYYLLKEYTSNVPSAFFYSEPEISLFSHLSTTAAIAISIFKQYEDGFKSGDINLFKDVKSDKKIMGIVKGDVSGIQNFIYNVSQEHAVKKLRGRSFYVSYLLEIIARYIIYSEKLSISNVIYNGGGHFYLLGPAIIIDKLSYYQKKIEENLFKAHGIELTVNLSGEKISLNELSGELFKNISEKVEDKKFRKFESILKKNHEEIFNLKDVSQNLCPYCHRELIGEKCEFCESFAELGDFLTKKNSFKILKTNKKIEKINSYNDIFNLFGYEIKFGDNLKDSYLTVKDKKIDFGRYIYFIKSANYVPKKDDGSIADLETIANNSKGIKKWGVLRGDVDNLGKVFGKGLGDKPPISKKATLSQEIEIFFGKFLEDIVRERFPNSSVIYSGGDDFFILGPWSDLPNLAWEIQKSLRSFSGENKDITVSMAMEFAPAKKYPVYRVALGAGNNLDIAKDYKRNGYEKNAFFNFNKVVGWEEFEEYTLIKEKLESFINKNITRKVLYVLRHFSGENRKIWRLFYYFSRLADRNKEIGKEILGFLDLILRNDNKLYKHIDSITYWVEYETREG
>NZ_CP007223.1|WP_077286968.1|116526_116940_-|type-III-A-CRISPR-associated-protein-Csm2
MENKVLISKELSEKMLNPEKDPDGKLLFEYAKKLAEEVKSINSNQIRKYFSEVKKISMDESKFKYEVKRFLAVFLYNIKKLSNYRSIINQAENFANSMKNMVLTLDEGDINYLKRFKDFWEALVAYHKYLETTNKRR
>NZ_CP007223.1|WP_075665156.1|126921_127710_-|MBL-fold-metallo-hydrolase
MKIWILMNDKAKSGFYSEHGFSVLTEVNGKKILFDTGQSDLFLKNVEKLDLNLLDLDAVVISHGHYDHGNGLEFLLKKIGPKKIYVGDGFFNLRYSGEKYAGIKHNRIFYERIGGNFEIVQNDLEIFKGVKIITAAPLKTSKYSEKKFKIGSKKEQDLFDDELYLFIESSDGAIVLTGCSHRGIVNIIFHLSKKGKIKTVIGGFHLLNKTNEELLQISNLLNDFQIDVLYPCHCTGDIAIDIFKKNLKTKICECLAGSVFEF
>NZ_CP007223.1|WP_075666666.1|127757_129140_-|peptide-amidase
MRDLTIKRFNKLYDEGKITSEKLVEFYLERISSISLNAVLEINPDALFIARAMDEERKNNKKRSNLHGVPVIIKGNIDTKDKMQTTGGAKALLGNYVNNDAFLVKKLREAGAVIIGKSNLTEFANFVSYEMPNGYSRLGGQTKNPYGNFDVGGSSSGSAVAVAADFALVSIGTETSGSILSPSSSNSCVGLKPTVGTVSRNGIIPISYTQDTAGPITRTVEDAFEVFRIIYGFDLNDPATYIVKNKKVPEKIKEISDYSGMIFGYSKQFFNWLTHEQILLFKDSLKKVEKLNGKVVEIKFENLDKINNINVLFYEFKHGINNYLKDKDLQVKTLTDVINFNFENKDAIPYGQSILLRSDTTDINEREYIESLLNDRKYAKGGIDWLFEKYNLTALLFPANYGAHITAKAKYPSITVPAGYTDTGPFGLTFSAREFEEEKLFSLAYLFEKNFSIRKIPLEK
>NZ_CP007223.1|WP_075665157.1|129166_130006_-|carbohydrate-ABC-transporter-permease
MKYKRVIYKFFLYLAVILIFIWCVFPFYWAIVSSLKPDKDLFELNPSLFPRQITFENYIKVFSERPFHINIWNSIVVSGITTLFSLAIGSLAAYAIARLKFKGKIVVMSLILAVSMFPQVSILGSLFVILRKFKLINTYSGLIFPYVSMTLPLTTWILQNFFRELPKEVEESAAIDGCSRFRTLWSIVLPMSAPGLVATGLLTFISAWNEFLYALTFMQRPSKYTVPVAIALFKGASQYEIPWGQIMAAAVIVTTPLVALVLIFQKKIIAGLSAGSVKG
>NZ_CP007223.1|WP_075665158.1|130018_130900_-|sugar-ABC-transporter-permease
MNKKEPIVAFWMIFPAIFVISVIAFFPLFKTFYDSFFDFGLNPMFKREFVGFGNYIKLFNDSRFWAAFKTTIIFTVVSVLLETVLGLLIALVVHQNFKFRGLVRAAMLIPWAIPTAISSQMWRWMFNDQFGIISKLYEALGIIKPGTPILGRPGLALWAIIQVDVWKTTPFMALLILAGLQLIPEQLYEAAKIDGANMVQRFFKITLPQIMQTIGIALIFRTLDALRVFDVVYVMTRGSVGTETLSVYNRSLLMDRAFTGRWFGYGSSLSVVIFLLISIFAIIYIKSLKLQID
>NZ_CP007223.1|WP_075665159.1|130951_132190_-|ABC-transporter-substrate-binding-protein
MKKLFVLSMLVFVFAFSFAITTITMTSGGVGKELEVLYAQLKEFMKQNPDIVVTVIPMPDSSTERHDLYVTYLAAGESDPDVLMLDVIWPPEFAPFLEDLTADYDYFELNKFLPGTVKSVTVMGRIVAVPWFTDAGLLYYRKDLLEKYGYKKPPETWDELVEMAKKISKAEGIEGFVWQGARYEGLVCDFMEYLWSFGADVLDENGNIIVNNPKAIEALQFMVDLIYKDGISPEGVTTYMEEDARRIFQSGNAVFMRNWPYAWSLANSDDSPIKGKVGIAPLPKGPGGKHAATLGGWNLGINANSSPKEKEAAKKLIKFLTSSKEQLYKAVNAGQNPTRMEVYEVPELKKANPFMVELFDVFINALPRPRAVNYAEISDSIQRHVHAALTRQVTPEQAIKDLEKELKMLLNK
>NZ_CP007223.1|WP_075665160.1|132522_133734_+|glycosyltransferase
MKVQLPQKSIKDYLKIAKEDVEELFEMAKDLKDLKIVHVNATSYGGGVAELLYTLIPLMNDLGINTQWEILEAPMEFFNVTKKLHNAFQGAKVDLIDEELDLYVKINKENAKNLDLDADVIIIHDPQPYLIPIFKEGKYIWRCHIDTSTPNKKIWNKIIPMACDKYSKALFHLEEYIQKPFEQIAIEFPPSIDPLSDKNKKLSKDQIQKIAKRYNIDLERPIITVVARFDPWKDLKSAIDVYRILKEKSDIQLLIVSAMAKDDPEGWILFEDILRYAGTDPDIHFLTDLKGVGHLEVNAFQTISTAGLHTATKEGFGLVIAEMLWKGNPIVARPVGGIKLQVIDGYNGYLNTEVNELSNALYKIISDKSLKDELGKNAIKSVKEKFLTTSHLKRYLKIIKEVV
>NZ_CP007223.1|WP_075665161.1|133733_134849_+|ROK-family-transcriptional-regulator
MELTTTKKILLELLIKKETSRKELEDALNITSSTLSYTLKKIKDYILISNKKSIGLGRPTQYVLLNPNYWYSVGIKVGRDYINATIFNSKFEILEKNALKITKEYMGNENISKLLDSVLSKLSLKDKIKSIGIAFSGNVIDKKVNSYILKLKDYSPKDIIKKHFGNIPFTILNDVEAIATEEFVNHAGEKILVLNYGTGIGACYLESLDYFNKNYKKIIELGHFYAGGNEKCYCGSTGCLETLASEYAILKKYKFRDLKITEFIENEEQYEIDLKEIRKLYKNFKKKAEIIYEDVFKHLTVSIINTFKLLSPKKIILTGEGVTPWFSQVLQKKVLSVSKEPIPIVYRGIESNIELGAAITALQYYIIQSKL
>NZ_CP007223.1|WP_075665162.1|134829_135768_-|HAMP-domain-containing-histidine-kinase
MEDFSFFENFDDAIIKLDFLKILNSNEVARSLGFFEGNDILSVFTFEKVDVVVEKIIKKENFMIEDKFYFFYLSDERYVRLKYFNGFIYIKDLTDEMRINEAKVNFTTSVSHELFTPLSVIKGNLYLLRDTFGDIEPLEQMEHAIKRMERIIKQLKIIAMLELGMYTPQKNVVDVEKILKEILEEFSERINKKRLSFEISVFQKEFFNDSFMLYTILKNIISNSIKYSYEDSKIYITVEKDKIRVKDRGIGIKKEEVEKVTERFYRSKDAIKMAYGSGLGLSIVKHICKILNCELKINSYYLIGTEVIICFE
>NZ_CP007223.1|WP_075665163.1|135754_136429_-|response-regulator-transcription-factor
MKKILIVEDDPLIRDVLKKYIVLEGFEIDEVESVFDLRKKLEEGKYDLILLDIMLPDGLSTDELPEIKVEYPEVGIIIISAKDSDSDKIFGLEIGADDYITKPFNPREVVARIKAYFRRVSGKKEVLRFGNLEIYCDDYVVLKEGQEVDLTAKEFEILCLLAKNQNVVFSRNRILDLVWKDEFISDRVVDVHISNIRNKLGKEWIITVRGAGYKFNARGYNGRL
>NZ_CP007223.1|WP_075665164.1|136425_137070_-|phosphate-signaling-complex-protein-PhoU
METLHFEREYALLKADISKMLSFVSKSFESSIDSLEFLDVNLANKVIEDDDAIDLLNREIEEKIYEIIARYNPKAKDLRYVITMIKFSNNLERIADLSCNIAEKVLDVTKKGIKYRIIKEIKEMFGVALKMLHDTFLAFSTKDVKLLKKIWERDKELDRIEIEIREKSKLEEKDIMITNILIARDLERIGDHLNNLCEEIVYIETGKELKELDI

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Crispr_ID: NZ_CP007223_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007223_2

306496-310809

TypeI-D

Consensus_repeat	Method
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	PILER-CR
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CRISPRCasFinder
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CRT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	PILER-CR

60 spacers

cas2,cas1,cas3,csc1gr5,csc2gr7,cas10d,WYL

The CRISPR arrays of NZ_CP007223_2

>merge|NZ_CP007223|2|306496-310809|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTTCTAATTTAGAAATCGGAATAAAAAACAGTCCTTCTTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACGGATGGACGTTTTTATATCCCAATCAACAAATTAGCGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTCTACATACGGCAACAACTCAGCAAGCCAATCTTCAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTTGGCAAAAGGGCTGCTGATTTTCTTGCTAAAGTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACGCACTTTATTGTTTAAATCAACGGATAAACCAGATTTTTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAGCATGGAGATATTATTTTTGATATTTTTAGAAATTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAAGCAAGCCGAAGGAATGTTGACAACTTTTGTTGAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACATTATAGACGCTCAAATTGGTAGTGTTGATTGGGATAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTCTTGTAAAGGTGGCGGCAAGGTGCCCATGGATGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAATGGTATCCCCAATAACCCCTATAAATTGAAATTGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTACCATAGGGTATCTGATAGGGTATCGATAGCCTATTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAATCTTCTAACTACCCAACCGTGTAAATTTCTTTCTTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTCTTGTGCCAATTCTTTAGTAGTCATCTTATCAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTAAAGTTGGTTTTCTGGTGAAAGGTGGATATAAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAAAAAAGGTATAGACTTTCAAAAAACAGAAAATAAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAAATTTACAATGGCACCAGATTATTAGTTAGGAAGCAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAATAGGGCTCCCGCTTGAACCCGAAAGGGAAGGGAGAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACATTCTACAAACATACTATTTCACCTCCAACAAACAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACGAAGTAGTGTACGCTGGTGGAGAAACAACAGATGATAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAGAATTGAGAATAGAGGAAAGAATTTGTGGGATAATTTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTACCAAATTTTTGCTTAAGACGCTCCCAAGAAGTAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACACTCTATATCTCCTAATGCTCCGTTTCTGTTTTTTCGTTAAAAAACCTAATTCCATAAATGGAATTCAAACGCATAAAATGAATACTTCAAAGAACCCTTGGGATATTTTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAGAGAAGAATGGTCAAAACAACGAATACATTTGGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACCGTTTGTGAAAGAAATAGAAGACGGACGTATTTTAGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACGTTGATAATGTCCAAACCAACGACGCACATGTTCAACAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTGGAATGCATGGATGAGATTAGAAAATCAACCAATGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACGCTGCCACCGATACCACCGTCGTAATGGCGGTGGCCGAAGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTAAATTAGAGATGTTAGAAGAGGAGGGAGACAGATGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACGTTTATAATTTTTCACGGGACTTACTTTAACATTAAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACGCTCCACTTGGGAATCTACTCCGTATTTGGAAATGGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTGGAACACCTGTTGTATACTTCGGAACATATGAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACACATTTTGACCATTAACGAAGTCAGACAAGAAATGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAATGTTGACGCCGATGGCCAAATAGTCATAAAGGTGGTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTTCGGTTAAATTTTCGATATCTTTATCTGTGCTGTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACGCACGTATTCTGGTGTTATATATATTCCACGGTTTCGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTCCACAGAACTATCAACAGTGAAAATATCACTAACTTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACATACCAATGCAGAAAGCCCATATGCAAGAGGACTTATGTTAAAAAACCTAATTCCATAAATGGAATTCAAACCGACTGTTACTATAGCAAGTGATAAGTTTGTCAAAAAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAAAGTTTTTCATTTTCTGCCTTTAATGTTTCTATTTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAGAGAGCTGGGGTGGTTCTGCTTAGTTTTTTAAGCCGTTAAAAAACCTAATTCCATAAATGGAATTCAAACCATATTGTTCATATGTTTCCCAATGCCCACTAGCGAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACACCTATTGTTTTTTGGTTGTTATCTGTTGTTGGCTCGTTAAAAAACCTAATTCCATAAATGGAATTCAAACATTACTTGTAGTAATAACCGCCCCTACAGTGGTAGTCAGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTAAGTGTTGTTGTAGATGGCGCGGTATTAACAGATTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTTTGAAGGCTTCGGATATAGAATAGAACCACGACGTTAAAAAACCTAATTCCATAAATGGAATTCAAACCTTATTATGAACGAAGCGTTGCAAATGCTTATTGGTGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACCTGTTGCAAAACGGAAGAGCTTTTAACTTGGCAAGAGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACATGTCTTGGCAGCTTGGTTTAATGGTGTACATTTGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTACTAATTGGTATTCACCTCTATATCCTTTTTGTGTTAAAAAACCTAATTCCATAAATGGAATTCAAACATTTAGTCTCCTGTGGAACATTTTCATCTATCCAAGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTGCAAATTTTAAATGATGCGGCTAACGATGCAAGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACATTTTTTAACAGGGCGCGCAGATTACAGAAATAGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACATTAAAATGTATGAACCACGCTGCAAGGTTTGTAAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACAGAACCCGCTGTATTAGTTTGCCCCCTTATAGTATGTGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACGGTTGATTGTGCCATCGGCTGTTTTTGCATATGCGGGTTAAAAAACCTAATTCCATAAAATGGAATTCAAACACGTAGGTGATACGCTAAGCGGCAATTATTATCTTGTTAAAAAACCTAATTCCATAAAATGGAATTCAAACTTGTGATTCCGTTTAGAGCCCAGCTCATTCAAACCAGTTAAAAAACCTAATTCCATAAAATGGAATTCAAACATCTAACAGTATCAAGGATAGTTTTGGGGATAAAAGCGTTAAAAAACCTAATTCCATAAAATGGAATTCAAACATAGAAAACTCAGGAGTAGCATTCCCAGTTATCGTGTTAAAAAACCTAATTCCATAAAATGGAATTCAAAT

>NZ_CP007223|2|2|306496-307031|PILER-CR
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTTCTAATTTAGAAATCGGAATAAAAAACAGTCCTTCTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GGATGGACGTTTTTATATCCCAATCAACAAATTAGC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TCTACATACGGCAACAACTCAGCAAGCCAATCTTCA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTTGGCAAAAGGGCTGCTGATTTTCTTGCTAAAGT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCACTTTATTGTTTAAATCAACGGATAAACCAGATTTTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGCATGGAGATATTATTTTTGATATTTTTAGAAATT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AAGCAAGCCGAAGGAATGTTGACAACTTTTGTTGA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAACATTATAGACGCTCAAATTGGTAGTGTTGATTGGGATAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTCTTGTAAAGGTGGCGGCAAGGTGCCCATGGATGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACA	ATGGTATCCCCAATAACCCCTATAAATTGAAATTGG
TTAAAAAACCTAATTCCATAAATGGAATTCAAACTA	CCATAGGGTATCTGATAGGGTATCGATAGCCTATTGT
TAAAAAACCTAATTCCATAAATGGAATTCAAACAAT	CTTCTAACTACCCAACCGTGTAAATTTCTTTCTTGTT
AAAAAACCTAATTCCATAAATGGAATTCAAACTTCT	TGTGCCAATTCTTTAGTAGTCATCTTATCAGTTA
AAAAACCTAATTCCATAAATGGAATTCAAACTTAAA	GTTGGTTTTCTGGTGAAAGGTGGATATAAGTTAA
AAAACCTAATTCCATAAATGGAATTCAAACAAAAAA	GGTATAGACTTTCAAAAAACAGAAAATAAGTTAAA
AAACCTAATTCCATAAATGGAATTCAAACAAATTTA	CAATGGCACCAGATTATTAGTTAGGAAGCAGTTAAAA
AACCTAATTCCATAAATGGAATTCAAACAATAGGGC	TCCCGCTTGAACCCGAAAGGGAAGGGAGAGTTAAAAA
ACCTAATTCCATAAATGGAATTCAAACATTCTACAA	ACATACTATTTCACCTCCAACAAACAGTTAAAAAA
CCTAATTCCATAAATGGAATTCAAACGAAGTAGTGT	ACGCTGGTGGAGAAACAACAGATGATAGTTAAAAAAC
CTAATTCCATAAATGGAATTCAAACAGAATTGAGAA	TAGAGGAAAGAATTTGTGGGATAATTTGTTAAAAAACC
TAATTCCATAAATGGAATTCAAACTTACCAAATTTT	TGCTTAAGACGCTCCCAAGAAGTAGTTAAAAAACCT
AATTCCATAAATGGAATTCAAACACTCTATATCTCC	TAATGCTCCGTTTCTGTTTTTTCGTTAAAAAACCTA
ATTCCATAAATGGAATTCAAACGCATAAAATGAATA	CTTCAAAGAACCCTTGGGATATTTTGTTAAAAAACCTAA
TTCCATAAATGGAATTCAAACAGAGAAGAATGGTCA	AAACAACGAATACATTTGGGTTAAAAAACCTAAT
TCCATAAATGGAATTCAAACCGTTTGTGAAAGAAAT	AGAAGACGGACGTATTTTAGGTTAAAAAACCTAATT
CCATAAATGGAATTCAAACGTTGATAATGTCCAAAC	CAACGACGCACATGTTCAACAGTTAAAAAACCTAATTC
CATAAATGGAATTCAAACTGGAATGCATGGATGAGA	TTAGAAAATCAACCAATGGTTAAAAAACCTAATTCC
ATAAATGGAATTCAAACGCTGCCACCGATACCACCG	TCGTAATGGCGGTGGCCGAAGGTTAAAAAACCTAATTCCA
TAAATGGAATTCAAACTTAAATTAGAGATGTTAGAA	GAGGAGGGAGACAGATGGTTAAAAAACCTAATTCCAT
AAATGGAATTCAAACGTTTATAATTTTTCACGGGAC	TTACTTTAACATTAAGTTAAAAAACCTAATTCCATA
AATGGAATTCAAACGCTCCACTTGGGAATCTACTCC	GTATTTGGAAATGGGTTAAAAAACCTAATTCCATAA
ATGGAATTCAAACTTGGAACACCTGTTGTATACTTC	GGAACATATGAGTTAAAAAACCTAATTCCATAAA
TGGAATTCAAACACATTTTGACCATTAACGAAGTCA	GACAAGAAATGTTAAAAAACCTAATTCCATAAAT
GGAATTCAAACAATGTTGACGCCGATGGCCAAATAG	TCATAAAGGTGGTGTTAAAAAACCTAATTCCATAAATG
GAATTCAAACTTTCGGTTAAATTTTCGATATCTTTA	TCTGTGCTGTGTTAAAAAACCTAATTCCATAAATGG
AATTCAAACGCACGTATTCTGGTGTTATATATATTC	CACGGTTTCGTTAAAAAACCTAATTCCATAAATGGA
ATTCAAACTCCACAGAACTATCAACAGTGAAAATAT	CACTAACTTGTTAAAAAACCTAATTCCATAAATGGAA
TTCAAACATACCAATGCAGAAAGCCCATATGCAAGA	GGACTTATGTTAAAAAACCTAATTCCATAAATGGAAT
TCAAACCGACTGTTACTATAGCAAGTGATAAGTTTG	TCAAAAAGTTAAAAAACCTAATTCCATAAATGGAATT
CAAACAAAGTTTTTCATTTTCTGCCTTTAATGTTTC	TATTTGTTAAAAAACCTAATTCCATAAATGGAATTC
AAACAGAGAGCTGGGGTGGTTCTGCTTAGTTTTTTA	AGCCGTTAAAAAACCTAATTCCATAAATGGAATTCA
AACCATATTGTTCATATGTTTCCCAATGCCCACTAG	CGAGTTAAAAAACCTAATTCCATAAATGGAATTCAA
ACACCTATTGTTTTTTGGTTGTTATCTGTTGTTGGC	TCGTTAAAAAACCTAATTCCATAAATGGAATTCAAA
CATTACTTGTAGTAATAACCGCCCCTACAGTGGTAG	TCAGGTTAAAAAACCTAATTCCATAAATGGAATTCAAAC
TTAAGTGTTGTTGTAGATGGCGCGGTATTAACAGAT	TGTTAAAAAACCTAATTCCATAAATGGAATTCAAACT
TTTGAAGGCTTCGGATATAGAATAGAACCACGACGT	TAAAAAACCTAATTCCATAAATGGAATTCAAACCT
TATTATGAACGAAGCGTTGCAAATGCTTATTGGTGG	TTAAAAAACCTAATTCCATAAATGGAATTCAAACCTG
TTGCAAAACGGAAGAGCTTTTAACTTGGCAAGAGGT	TAAAAAACCTAATTCCATAAATGGAATTCAAACATGT
CTTGGCAGCTTGGTTTAATGGTGTACATTTGGTTAA	AAAACCTAATTCCATAAATGGAATTCAAACTTACT
AATTGGTATTCACCTCTATATCCTTTTTGTGTTAAA	AAACCTAATTCCATAAATGGAATTCAAACATTTAG
TCTCCTGTGGAACATTTTCATCTATCCAAGGTTAAA	AAACCTAATTCCATAAATGGAATTCAAACTTGCAAA
TTTTAAATGATGCGGCTAACGATGCAAGGTTAAAAA	ACCTAATTCCATAAATGGAATTCAAACATTTTTTA
ACAGGGCGCGCAGATTACAGAAATAGGTTAAAAAAC	CTAATTCCATAAATGGAATTCAAACATTAAAATG
TATGAACCACGCTGCAAGGTTTGTAAGTTAAAAAAC	CTAATTCCATAAATGGAATTCAAACAGAACCCGCT
GTATTAGTTTGCCCCCTTATAGTATGTGGTTAAAAA	ACCTAATTCCATAAATGGAATTCAAACGGTTGATTGTG
CCATCGGCTGTTTTTGCATATGCGGGTTAAAAAACC	TAATTCCATAAAATGGAATTCAAACACGTAGGTGAT
ACGCTAAGCGGCAATTATTATCTTGTTAAAAAACCT	AATTCCATAAAATGGAATTCAAACTTGTGATTCCG
TTTAGAGCCCAGCTCATTCAAACCAGTTAAAAAACC	TAATTCCATAAAATGGAATTCAAACATCTAACAGTA
TCAAGGATAGTTTTGGGGATAAAAGCGTTAAAAAAC	CTAATTCCATAAAATGGAATTCAAACATAGAAAACTC
AGGAGTAGCATTCCCAGTTATCGTGTTAAAAAACCT	AATTCCATAAAATGGAATTCAAATTGTTACTACAC


>NZ_CP007223|2|2|306496-310808|CRISPRCasFinder
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTTCTAATTTAGAAATCGGAATAAAAAACAGTCCTTCTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GGATGGACGTTTTTATATCCCAATCAACAAATTAGC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TCTACATACGGCAACAACTCAGCAAGCCAATCTTCA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTTGGCAAAAGGGCTGCTGATTTTCTTGCTAAAGT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCACTTTATTGTTTAAATCAACGGATAAACCAGATTTTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGCATGGAGATATTATTTTTGATATTTTTAGAAATT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AAGCAAGCCGAAGGAATGTTGACAACTTTTGTTGA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTATAGACGCTCAAATTGGTAGTGTTGATTGGGATA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTCTTGTAAAGGTGGCGGCAAGGTGCCCATGGATG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AATGGTATCCCCAATAACCCCTATAAATTGAAATTG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TACCATAGGGTATCTGATAGGGTATCGATAGCCTATT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AATCTTCTAACTACCCAACCGTGTAAATTTCTTTCTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTCTTGTGCCAATTCTTTAGTAGTCATCTTATCA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTAAAGTTGGTTTTCTGGTGAAAGGTGGATATAA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AAAAAAGGTATAGACTTTCAAAAAACAGAAAATAA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AAATTTACAATGGCACCAGATTATTAGTTAGGAAGCA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AATAGGGCTCCCGCTTGAACCCGAAAGGGAAGGGAGA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTCTACAAACATACTATTTCACCTCCAACAAACA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GAAGTAGTGTACGCTGGTGGAGAAACAACAGATGATA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGAATTGAGAATAGAGGAAAGAATTTGTGGGATAATTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTACCAAATTTTTGCTTAAGACGCTCCCAAGAAGTA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ACTCTATATCTCCTAATGCTCCGTTTCTGTTTTTTC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCATAAAATGAATACTTCAAAGAACCCTTGGGATATTTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGAGAAGAATGGTCAAAACAACGAATACATTTGG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CGTTTGTGAAAGAAATAGAAGACGGACGTATTTTAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GTTGATAATGTCCAAACCAACGACGCACATGTTCAACA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TGGAATGCATGGATGAGATTAGAAAATCAACCAATG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCTGCCACCGATACCACCGTCGTAATGGCGGTGGCCGAAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTAAATTAGAGATGTTAGAAGAGGAGGGAGACAGATG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GTTTATAATTTTTCACGGGACTTACTTTAACATTAA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCTCCACTTGGGAATCTACTCCGTATTTGGAAATGG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTGGAACACCTGTTGTATACTTCGGAACATATGA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ACATTTTGACCATTAACGAAGTCAGACAAGAAAT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AATGTTGACGCCGATGGCCAAATAGTCATAAAGGTGGT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTTCGGTTAAATTTTCGATATCTTTATCTGTGCTGT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCACGTATTCTGGTGTTATATATATTCCACGGTTTC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TCCACAGAACTATCAACAGTGAAAATATCACTAACTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATACCAATGCAGAAAGCCCATATGCAAGAGGACTTAT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CGACTGTTACTATAGCAAGTGATAAGTTTGTCAAAAA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AAAGTTTTTCATTTTCTGCCTTTAATGTTTCTATTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGAGAGCTGGGGTGGTTCTGCTTAGTTTTTTAAGCC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CATATTGTTCATATGTTTCCCAATGCCCACTAGCGA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ACCTATTGTTTTTTGGTTGTTATCTGTTGTTGGCTC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTACTTGTAGTAATAACCGCCCCTACAGTGGTAGTCAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTAAGTGTTGTTGTAGATGGCGCGGTATTAACAGATT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTTTGAAGGCTTCGGATATAGAATAGAACCACGAC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CTTATTATGAACGAAGCGTTGCAAATGCTTATTGGTG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CTGTTGCAAAACGGAAGAGCTTTTAACTTGGCAAGAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATGTCTTGGCAGCTTGGTTTAATGGTGTACATTTG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTACTAATTGGTATTCACCTCTATATCCTTTTTGT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTTAGTCTCCTGTGGAACATTTTCATCTATCCAAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTGCAAATTTTAAATGATGCGGCTAACGATGCAAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTTTTTAACAGGGCGCGCAGATTACAGAAATAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTAAAATGTATGAACCACGCTGCAAGGTTTGTAA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGAACCCGCTGTATTAGTTTGCCCCCTTATAGTATGTG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GGTTGATTGTGCCATCGGCTGTTTTTGCATATGCGG
GTTAAAAAACCTAATTCCATAAAATGGAATTCAAA	CACGTAGGTGATACGCTAAGCGGCAATTATTATCTT
GTTAAAAAACCTAATTCCATAAAATGGAATTCAAA	CTTGTGATTCCGTTTAGAGCCCAGCTCATTCAAACCA
GTTAAAAAACCTAATTCCATAAAATGGAATTCAAA	CATCTAACAGTATCAAGGATAGTTTTGGGGATAAAAGC
GTTAAAAAACCTAATTCCATAAAATGGAATTCAAA	CATAGAAAACTCAGGAGTAGCATTCCCAGTTATCGT
GTTAAAAAACCTAATTCCATAAAATGGAATTCAAA

>NZ_CP007223|2|2|306496-310808|CRT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTTCTAATTTAGAAATCGGAATAAAAAACAGTCCTTCTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GGATGGACGTTTTTATATCCCAATCAACAAATTAGC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TCTACATACGGCAACAACTCAGCAAGCCAATCTTCA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTTGGCAAAAGGGCTGCTGATTTTCTTGCTAAAGT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCACTTTATTGTTTAAATCAACGGATAAACCAGATTTTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGCATGGAGATATTATTTTTGATATTTTTAGAAATT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AAGCAAGCCGAAGGAATGTTGACAACTTTTGTTGA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTATAGACGCTCAAATTGGTAGTGTTGATTGGGATA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTCTTGTAAAGGTGGCGGCAAGGTGCCCATGGATG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AATGGTATCCCCAATAACCCCTATAAATTGAAATTG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TACCATAGGGTATCTGATAGGGTATCGATAGCCTATT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AATCTTCTAACTACCCAACCGTGTAAATTTCTTTCTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTCTTGTGCCAATTCTTTAGTAGTCATCTTATCA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTAAAGTTGGTTTTCTGGTGAAAGGTGGATATAA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AAAAAAGGTATAGACTTTCAAAAAACAGAAAATAA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AAATTTACAATGGCACCAGATTATTAGTTAGGAAGCA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AATAGGGCTCCCGCTTGAACCCGAAAGGGAAGGGAGA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTCTACAAACATACTATTTCACCTCCAACAAACA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GAAGTAGTGTACGCTGGTGGAGAAACAACAGATGATA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGAATTGAGAATAGAGGAAAGAATTTGTGGGATAATTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTACCAAATTTTTGCTTAAGACGCTCCCAAGAAGTA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ACTCTATATCTCCTAATGCTCCGTTTCTGTTTTTTC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCATAAAATGAATACTTCAAAGAACCCTTGGGATATTTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGAGAAGAATGGTCAAAACAACGAATACATTTGG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CGTTTGTGAAAGAAATAGAAGACGGACGTATTTTAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GTTGATAATGTCCAAACCAACGACGCACATGTTCAACA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TGGAATGCATGGATGAGATTAGAAAATCAACCAATG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCTGCCACCGATACCACCGTCGTAATGGCGGTGGCCGAAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTAAATTAGAGATGTTAGAAGAGGAGGGAGACAGATG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GTTTATAATTTTTCACGGGACTTACTTTAACATTAA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCTCCACTTGGGAATCTACTCCGTATTTGGAAATGG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTGGAACACCTGTTGTATACTTCGGAACATATGA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ACATTTTGACCATTAACGAAGTCAGACAAGAAAT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AATGTTGACGCCGATGGCCAAATAGTCATAAAGGTGGT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTTCGGTTAAATTTTCGATATCTTTATCTGTGCTGT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCACGTATTCTGGTGTTATATATATTCCACGGTTTC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TCCACAGAACTATCAACAGTGAAAATATCACTAACTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATACCAATGCAGAAAGCCCATATGCAAGAGGACTTAT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CGACTGTTACTATAGCAAGTGATAAGTTTGTCAAAAA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AAAGTTTTTCATTTTCTGCCTTTAATGTTTCTATTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGAGAGCTGGGGTGGTTCTGCTTAGTTTTTTAAGCC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CATATTGTTCATATGTTTCCCAATGCCCACTAGCGA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ACCTATTGTTTTTTGGTTGTTATCTGTTGTTGGCTC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTACTTGTAGTAATAACCGCCCCTACAGTGGTAGTCAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTAAGTGTTGTTGTAGATGGCGCGGTATTAACAGATT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTTTGAAGGCTTCGGATATAGAATAGAACCACGAC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CTTATTATGAACGAAGCGTTGCAAATGCTTATTGGTG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	CTGTTGCAAAACGGAAGAGCTTTTAACTTGGCAAGAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATGTCTTGGCAGCTTGGTTTAATGGTGTACATTTG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTACTAATTGGTATTCACCTCTATATCCTTTTTGT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTTAGTCTCCTGTGGAACATTTTCATCTATCCAAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTGCAAATTTTAAATGATGCGGCTAACGATGCAAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTTTTTAACAGGGCGCGCAGATTACAGAAATAG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	ATTAAAATGTATGAACCACGCTGCAAGGTTTGTAA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGAACCCGCTGTATTAGTTTGCCCCCTTATAGTATGTG
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GGTTGATTGTGCCATCGGCTGTTTTTGCATATGCGG
GTTAAAAAACCTAATTCCATAAAATGGAATTCAAA	CACGTAGGTGATACGCTAAGCGGCAATTATTATCTT
GTTAAAAAACCTAATTCCATAAAATGGAATTCAAA	CTTGTGATTCCGTTTAGAGCCCAGCTCATTCAAACCA
GTTAAAAAACCTAATTCCATAAAATGGAATTCAAA	CATCTAACAGTATCAAGGATAGTTTTGGGGATAAAAGC
GTTAAAAAACCTAATTCCATAAAATGGAATTCAAA	CATAGAAAACTCAGGAGTAGCATTCCCAGTTATCGT
GTTAAAAAACCTAATTCCATAAAATGGAATTCAAA

>NZ_CP007223|2|3|307139-310809|PILER-CR
	TTTCTAATTTAGAAATCGGAATAAAAAACAGTCCTTCTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GGATGGACGTTTTTATATCCCAATCAACAAATTAGC
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TCTACATACGGCAACAACTCAGCAAGCCAATCTTCA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	TTTGGCAAAAGGGCTGCTGATTTTCTTGCTAAAGT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	GCACTTTATTGTTTAAATCAACGGATAAACCAGATTTTT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AGCATGGAGATATTATTTTTGATATTTTTAGAAATT
GTTAAAAAACCTAATTCCATAAATGGAATTCAAAC	AAGCAAGCCGAAGGAATGTTGACAACTTTTGTTGA
GTTAAAAAACCTAATTCCATAAATGGAATTCAAACATTATAGACGCTCAAATTGGTAGTGTTGATTGGGATAGTTAAAAAACCTAATTCCATAAATGGAATTCAAACTTCTTGTAAAGGTGGCGGCAAGGTGCCCATGGATGGTTAAAAAACCTAATTCCATAAATGGAATTCAAACA	ATGGTATCCCCAATAACCCCTATAAATTGAAATTGG
TTAAAAAACCTAATTCCATAAATGGAATTCAAACTA	CCATAGGGTATCTGATAGGGTATCGATAGCCTATTGT
TAAAAAACCTAATTCCATAAATGGAATTCAAACAAT	CTTCTAACTACCCAACCGTGTAAATTTCTTTCTTGTT
AAAAAACCTAATTCCATAAATGGAATTCAAACTTCT	TGTGCCAATTCTTTAGTAGTCATCTTATCAGTTA
AAAAACCTAATTCCATAAATGGAATTCAAACTTAAA	GTTGGTTTTCTGGTGAAAGGTGGATATAAGTTAA
AAAACCTAATTCCATAAATGGAATTCAAACAAAAAA	GGTATAGACTTTCAAAAAACAGAAAATAAGTTAAA
AAACCTAATTCCATAAATGGAATTCAAACAAATTTA	CAATGGCACCAGATTATTAGTTAGGAAGCAGTTAAAA
AACCTAATTCCATAAATGGAATTCAAACAATAGGGC	TCCCGCTTGAACCCGAAAGGGAAGGGAGAGTTAAAAA
ACCTAATTCCATAAATGGAATTCAAACATTCTACAA	ACATACTATTTCACCTCCAACAAACAGTTAAAAAA
CCTAATTCCATAAATGGAATTCAAACGAAGTAGTGT	ACGCTGGTGGAGAAACAACAGATGATAGTTAAAAAAC
CTAATTCCATAAATGGAATTCAAACAGAATTGAGAA	TAGAGGAAAGAATTTGTGGGATAATTTGTTAAAAAACC
TAATTCCATAAATGGAATTCAAACTTACCAAATTTT	TGCTTAAGACGCTCCCAAGAAGTAGTTAAAAAACCT
AATTCCATAAATGGAATTCAAACACTCTATATCTCC	TAATGCTCCGTTTCTGTTTTTTCGTTAAAAAACCTA
ATTCCATAAATGGAATTCAAACGCATAAAATGAATA	CTTCAAAGAACCCTTGGGATATTTTGTTAAAAAACCTAA
TTCCATAAATGGAATTCAAACAGAGAAGAATGGTCA	AAACAACGAATACATTTGGGTTAAAAAACCTAAT
TCCATAAATGGAATTCAAACCGTTTGTGAAAGAAAT	AGAAGACGGACGTATTTTAGGTTAAAAAACCTAATT
CCATAAATGGAATTCAAACGTTGATAATGTCCAAAC	CAACGACGCACATGTTCAACAGTTAAAAAACCTAATTC
CATAAATGGAATTCAAACTGGAATGCATGGATGAGA	TTAGAAAATCAACCAATGGTTAAAAAACCTAATTCC
ATAAATGGAATTCAAACGCTGCCACCGATACCACCG	TCGTAATGGCGGTGGCCGAAGGTTAAAAAACCTAATTCCA
TAAATGGAATTCAAACTTAAATTAGAGATGTTAGAA	GAGGAGGGAGACAGATGGTTAAAAAACCTAATTCCAT
AAATGGAATTCAAACGTTTATAATTTTTCACGGGAC	TTACTTTAACATTAAGTTAAAAAACCTAATTCCATA
AATGGAATTCAAACGCTCCACTTGGGAATCTACTCC	GTATTTGGAAATGGGTTAAAAAACCTAATTCCATAA
ATGGAATTCAAACTTGGAACACCTGTTGTATACTTC	GGAACATATGAGTTAAAAAACCTAATTCCATAAA
TGGAATTCAAACACATTTTGACCATTAACGAAGTCA	GACAAGAAATGTTAAAAAACCTAATTCCATAAAT
GGAATTCAAACAATGTTGACGCCGATGGCCAAATAG	TCATAAAGGTGGTGTTAAAAAACCTAATTCCATAAATG
GAATTCAAACTTTCGGTTAAATTTTCGATATCTTTA	TCTGTGCTGTGTTAAAAAACCTAATTCCATAAATGG
AATTCAAACGCACGTATTCTGGTGTTATATATATTC	CACGGTTTCGTTAAAAAACCTAATTCCATAAATGGA
ATTCAAACTCCACAGAACTATCAACAGTGAAAATAT	CACTAACTTGTTAAAAAACCTAATTCCATAAATGGAA
TTCAAACATACCAATGCAGAAAGCCCATATGCAAGA	GGACTTATGTTAAAAAACCTAATTCCATAAATGGAAT
TCAAACCGACTGTTACTATAGCAAGTGATAAGTTTG	TCAAAAAGTTAAAAAACCTAATTCCATAAATGGAATT
CAAACAAAGTTTTTCATTTTCTGCCTTTAATGTTTC	TATTTGTTAAAAAACCTAATTCCATAAATGGAATTC
AAACAGAGAGCTGGGGTGGTTCTGCTTAGTTTTTTA	AGCCGTTAAAAAACCTAATTCCATAAATGGAATTCA
AACCATATTGTTCATATGTTTCCCAATGCCCACTAG	CGAGTTAAAAAACCTAATTCCATAAATGGAATTCAA
ACACCTATTGTTTTTTGGTTGTTATCTGTTGTTGGC	TCGTTAAAAAACCTAATTCCATAAATGGAATTCAAA
CATTACTTGTAGTAATAACCGCCCCTACAGTGGTAG	TCAGGTTAAAAAACCTAATTCCATAAATGGAATTCAAAC
TTAAGTGTTGTTGTAGATGGCGCGGTATTAACAGAT	TGTTAAAAAACCTAATTCCATAAATGGAATTCAAACT
TTTGAAGGCTTCGGATATAGAATAGAACCACGACGT	TAAAAAACCTAATTCCATAAATGGAATTCAAACCT
TATTATGAACGAAGCGTTGCAAATGCTTATTGGTGG	TTAAAAAACCTAATTCCATAAATGGAATTCAAACCTG
TTGCAAAACGGAAGAGCTTTTAACTTGGCAAGAGGT	TAAAAAACCTAATTCCATAAATGGAATTCAAACATGT
CTTGGCAGCTTGGTTTAATGGTGTACATTTGGTTAA	AAAACCTAATTCCATAAATGGAATTCAAACTTACT
AATTGGTATTCACCTCTATATCCTTTTTGTGTTAAA	AAACCTAATTCCATAAATGGAATTCAAACATTTAG
TCTCCTGTGGAACATTTTCATCTATCCAAGGTTAAA	AAACCTAATTCCATAAATGGAATTCAAACTTGCAAA
TTTTAAATGATGCGGCTAACGATGCAAGGTTAAAAA	ACCTAATTCCATAAATGGAATTCAAACATTTTTTA
ACAGGGCGCGCAGATTACAGAAATAGGTTAAAAAAC	CTAATTCCATAAATGGAATTCAAACATTAAAATG
TATGAACCACGCTGCAAGGTTTGTAAGTTAAAAAAC	CTAATTCCATAAATGGAATTCAAACAGAACCCGCT
GTATTAGTTTGCCCCCTTATAGTATGTGGTTAAAAA	ACCTAATTCCATAAATGGAATTCAAACGGTTGATTGTG
CCATCGGCTGTTTTTGCATATGCGGGTTAAAAAACC	TAATTCCATAAAATGGAATTCAAACACGTAGGTGAT
ACGCTAAGCGGCAATTATTATCTTGTTAAAAAACCT	AATTCCATAAAATGGAATTCAAACTTGTGATTCCG
TTTAGAGCCCAGCTCATTCAAACCAGTTAAAAAACC	TAATTCCATAAAATGGAATTCAAACATCTAACAGTA
TCAAGGATAGTTTTGGGGATAAAAGCGTTAAAAAAC	CTAATTCCATAAAATGGAATTCAAACATAGAAAACTC
AGGAGTAGCATTCCCAGTTATCGTGTTAAAAAACCT	AATTCCATAAAATGGAATTCAAATTGTTACTACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007223.1\|WP_075665311.1\|306031_306307_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|187856
NZ_CP007223.1\|WP_075665315.1\|316008_317217_+\|uracil-permease	unknown	unknown	gnl\|CDD\|236744
NZ_CP007223.1\|WP_075665308.1\|301744_302437_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	csc1gr5	cd09711_csc1gr5_CAS-I-D	gnl\|CDD\|274458
NZ_CP007223.1\|WP_075665304.1\|296540_297272_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273848
NZ_CP007223.1\|WP_075665314.1\|314430_315852_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP007223.1\|WP_075665317.1\|318308_319601_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|184627
NZ_CP007223.1\|WP_075665320.1\|321019_321952_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP007223.1\|WP_075665313.1\|313016_314426_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP007223.1\|WP_075665321.1\|321899_323006_+\|tetratricopeptide-repeat-protein	unknown	unknown	unknown
NZ_CP007223.1\|WP_075665307.1\|300724_301696_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	csc2gr7	cd09709_csc2gr7_CAS-I-D	gnl\|CDD\|375747
NZ_CP007223.1\|WP_075665319.1\|320487_321018_+\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238245
NZ_CP007223.1\|WP_075665316.1\|317227_318199_-\|acyltransferase	unknown	unknown	gnl\|CDD\|226122
NZ_CP007223.1\|WP_075665306.1\|298362_300732_+\|hypothetical-protein	cas10d	mkCas0201_cas10d_CAS-I-D	gnl\|CDD\|274469
NZ_CP007223.1\|WP_075665310.1\|304475_306026_+\|CRISPR-associated-endonuclease-Cas4/Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP007223.1\|WP_075665305.1\|297264_298224_+\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP007223.1\|WP_075665318.1\|319614_320478_+\|YitT-family-protein	unknown	unknown	gnl\|CDD\|224203
NZ_CP007223.1\|WP_075665303.1\|295896_296151_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP007223.1\|WP_075665302.1\|294834_295839_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	unknown	unknown	gnl\|CDD\|234666
NZ_CP007223.1\|WP_075665309.1\|302426_304460_+\|type-I-D-CRISPR-associated-helicase-Cas3'	cas3	cd09710_cas3_CAS-I-D	gnl\|CDD\|187841
NZ_CP007223.1\|WP_075665312.1\|311328_313020_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405

Protein	Function_ID	Function_description	E-value
NZ_CP007223.1\|WP_075665311.1\|306031_306307_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.21427e-20
NZ_CP007223.1\|WP_075665315.1\|316008_317217_+\|uracil-permease	gnl\|CDD\|236744	PRK10720, PRK10720, uracil transporter; Provisional.	3.40928e-116
NZ_CP007223.1\|WP_075665308.1\|301744_302437_+\|type-I-D-CRISPR-associated-protein-Cas5/Csc1	gnl\|CDD\|274458	TIGR03159, cas_Csc1, CRISPR type I-D/CYANO-associated protein Csc1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc1 for CRISPR/Cas Subtype Cyano protein 1, as it is often the first gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	5.3065e-38
NZ_CP007223.1\|WP_075665304.1\|296540_297272_+\|hypothetical-protein	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	3.98129e-11
NZ_CP007223.1\|WP_075665314.1\|314430_315852_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP007223.1\|WP_075665317.1\|318308_319601_+\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|184627	PRK14330, PRK14330, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP007223.1\|WP_075665320.1\|321019_321952_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	1.02875e-81
NZ_CP007223.1\|WP_075665313.1\|313016_314426_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP007223.1\|WP_075665307.1\|300724_301696_+\|type-I-D-CRISPR-associated-protein-Cas7/Csc2	gnl\|CDD\|375747	pfam18320, Csc2, Csc2 Crispr. The Csc2 Crispr family of proteins forms a core RNA recognition motif-like domain, flanked by three peripheral insertion domains: a lid domain, a Zinc-binding domain and a helical domain. The CRISPR-Cas system is possibly a mechanism of defence against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	2.05797e-96
NZ_CP007223.1\|WP_075665319.1\|320487_321018_+\|cysteine-hydrolase	gnl\|CDD\|238245	cd00431, cysteine_hydrolases, Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.	1.8697e-53
NZ_CP007223.1\|WP_075665316.1\|317227_318199_-\|acyltransferase	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	0.00526943
NZ_CP007223.1\|WP_075665306.1\|298362_300732_+\|hypothetical-protein	gnl\|CDD\|274469	TIGR03174, cas_Csc3, CRISPR type I-D/CYANO-associated protein Csc3/Cas10d. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family is a CRISPR-associated (Cas) family strictly associated with the Cyano subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. This family is designated Csc3 for CRISPR/Cas Subtype Cyano protein 3, as it is often the third gene upstream of the core cas genes, cas3-cas4-cas1-cas2.	1.2428e-05
NZ_CP007223.1\|WP_075665310.1\|304475_306026_+\|CRISPR-associated-endonuclease-Cas4/Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	1.63813e-91
NZ_CP007223.1\|WP_075665305.1\|297264_298224_+\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	5.36872e-41
NZ_CP007223.1\|WP_075665318.1\|319614_320478_+\|YitT-family-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	1.09434e-64
NZ_CP007223.1\|WP_075665303.1\|295896_296151_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	2.05061e-46
NZ_CP007223.1\|WP_075665302.1\|294834_295839_-\|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA	gnl\|CDD\|234666	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional.	0
NZ_CP007223.1\|WP_075665309.1\|302426_304460_+\|type-I-D-CRISPR-associated-helicase-Cas3'	gnl\|CDD\|187841	cd09710, Cas3_I-D, CRISPR/Cas system-associated protein Cas3; Distinct diverged subfamily of Cas3 helicase domain. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Diverged DNA helicase Cas3'; signature gene for Type I and subtype I-D.	3.70612e-36
NZ_CP007223.1\|WP_075665312.1\|311328_313020_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0

>NZ_CP007223.1|WP_075665311.1|306031_306307_+|CRISPR-associated-endonuclease-Cas2
MMTYIISYDIKKDKKRNKISKILEEYGQRLQYSVFICQVPKKELYNILLRMNPIIDKNTDSILIIPINLSKMEIIGTVKIDILTNNDNYIL
>NZ_CP007223.1|WP_075665310.1|304475_306026_+|CRISPR-associated-endonuclease-Cas4/Cas1
MFPEIPIYSINAYLYCEYRYFLEEVVGIFKENAHISEGKYINEKESKNISTKNWKKTSKIFVSSEEYGIYGYIDNVIKTPDKIKIVEIKKGSAKKPYENDIMQIIAYMIAYSETFEIKKESIIGELNYKGSNTKFRVKLTDNRLNKLKNIIDNIYAIKSDKIRPVPKYRKKCKDCSLFEICQPINNEKVKIMPRIVEKQPIFLFSHGIFIGKKGESFLFTLNNEKNVIPAYKISSINIFGIFTISRQAVELAAKYSIPIIINNSICKNITTINIPFSKNNFLRKKQVELSSDEKLKLELSKKMIIGKIRNMEITLKKKNIKISYTPYIYKINKASTSDEIIGIEGIVSRNYFENFGNILNNFTFNTRTRRPPKDPINSLLSFGYTILYNLVHSILLSIGLDPYFGFLHTTQYGRGSLALDLMEEFRPLIIDTSVIKVINKSMIKEKDFIKENNGIYLKQKARKKFVNVILKRLLDKHYYDKMGGSIEYIRIIESQARLLQKHILGELEYTPFIVKK
>NZ_CP007223.1|WP_075665309.1|302426_304460_+|type-I-D-CRISPR-associated-helicase-Cas3'
MKIKSLEIPVIYDKYVKFIPFHQIETAEKLKKYDIVFNTYPTGSGKTRALLNSIKELTPKKVLIIAPINVLIDQYEEKVKQFVKSEKLEYEVVTFTSSRIKETKETFESNQQFVRKVLEKKSKTIIISNPDIVYLILLQFYGNNYNIKRTMVTDLLSEIDFFAFDEFHYYDPIRSFLAITLLFTYHQIKNKNNETKKFLFLSATPSNTIIKVLKHLNLNWYEVKLDEGHNKSKEKSLSEINLDFSFGSLEENVDEVINEINNHTNENGKIIIISNSLRRIWILKDKLNTLGVDAGIIIGPIKSKEERKRNLQKKVILATPTVDIGYDFEKVRLLIFEAFNPDEFLQRLGRAGRTLGKTLNFTPKVIAFLPKTVKYKFEQIFQDKNTITRKELESKIKEIFSSHNLDFEQLYRGPFVLQIAFFLYNFEKLFVKDDKFFEDYKKNFLNLYKIPVDYTVLKNKYLPYFIIYVYETLKQISEDKANKFIEFDFNKKILKNFIERKIAERLINTKKINYYFKGIKQFFDNYILNFRINDITNVKVVDKQKTFGIEKFDYSLIFILENANIERIDKNTIYINGISRKEKIHFEVPKIINKEFFVTYLTINEEFIGLEENNKFLKAVFLLNNKTEAIAKSFGFYPSRIIMGSEKKKALFGEQALIAKTLFSTEKPWDFEILPIV
>NZ_CP007223.1|WP_075665308.1|301744_302437_+|type-I-D-CRISPR-associated-protein-Cas5/Csc1
MKIYKATLETLEPLFFATKELGDTYVTEPYISNYSLAYTILSLYDYVRHNVPTYKEDLKDLNVYITPAKFVNFRWQMENFNSTGEGYYLKMLQNNYSNSPKRNNDRAKNIPQIGKLKLISSESIAKFYVIDYSSNLKLPKYIRLGKFNTKCHMDYEEISNIELKEGTFFCKQPLNVLDLPKNMKLLSFKIIPIKPVQIIEKAKLSGNFISIDNDNIPLNMHFFGGNFNEN
>NZ_CP007223.1|WP_075665307.1|300724_301696_+|type-I-D-CRISPR-associated-protein-Cas7/Csc2
MDKIKELLKGGYVEDGSFPLKPLGKYIHIILRTRTLSETIFRTDEGLTIETVKAGINDNNEIQRVIMSKRKRIAAERRIGREFLMNYKLKDESCEINQSMCGRCLDCTVYGFAAGEKGKETEGALKSRVITENAYSILPYEMISDVRTFNALSELGTMMEKKEKKEKIELTMRQSLGENEYIKPEVDFIDIETLKDLRFAEVLYALGNILRTKRYGAIDSRLGKVKNEIIAIIISDAEIFGSLELTKKVWDKLEVKEHILEENIVDEKILESVKELLDGEFCKYKIVEKNDLKVLKDEIKSIYLKPEDNLISLFKNVKSIFDK
>NZ_CP007223.1|WP_075665306.1|298362_300732_+|hypothetical-protein
MNVNLRKFLIKILQNYPQKHTSGLKKGIPFSIHFANVGLIAYQISEILRKIGYFNLEDSHTVFIAAVIHDMNKITNTSMRTAAIRENIIKVLKENFSENEDFWKDKIDTIQNIIPLHSVDNPVGSKLYISQKEKVMAKIIQFSDTFDLLDSANLEYDHNIYKKLLNLLEELNYYVPEFKYNYLVYHYFNDYRGVLTNYITDEIINKFKTTVLAVPIARFNDGVVYLCNKEKYIPELLFEDIVLETPKKVFHKIFSMDYTLQKKGNEVYLREGIFNFSLDDALTHIIFVINNLKTSDKNKVLKKITEDYLKKYFGNKTKKTMEIYEEFDLIFNSTKEIETIKEKLINLIKKHETQRKIKNTYVDELKKYIETRLHLSNLQKNNISTFTINKYGKNPKKVCSICGSEFEVSEAMSAELPRGIKPQLFSNILPANKTMDPKRNICSICKLQFIANKNKSYSADEKNVYYVLIPYNYFPDELINEIKEEYISIKSNSTKENKSKDNENILSMLGIESETIEDGLFDYTNINIPIINPIRYKNSKKYSETVFIAYAKALYIQKNFPVKILITGYPQLLDEDIRFSEEILVQDLSFKLKKTSSERILKLYEIFRNNPKNFFANKNNYFYKISTSEPLTAFSTYITKVFETKKDKKVILNIFEALFGGEKMEYAKKISEFILKQQEHIFNASKHQIVKYFDVCKEVLKKFEPQIESEEDLKAQLFSRIENLVNKPIKKEEIMNYIDNFVEFVKELENKNLDKGRKKLLLNWKKYRDLIYGYVWKIYFENKEAKNNG
>NZ_CP007223.1|WP_075665305.1|297264_298224_+|WYL-domain-containing-protein
MRKKYLRILKIIIYILNQKEVTTKELSEKFNVSIRTIQRDLHEIENLGISLEREIDGTVRILENNQLHLKGLNLNLEEKKILLLMMNLSEKYLYDLFTDTINEVKIKFINSLEPQMKELNKKRSTLYRFLKQRHENIKLWIVNSIERAILEQRKIKIRYNHPKKGEEEYELSPYLFLFSKNHWYLFALESKKNFEGLFRLSRIKKVIYLNDKFKPPKDLEEKINSIWETQYSTRRYTIKIKFSKEVAQLIKDTARHPSQIIQELENGEILYTVKVSGYKEILYWILSWGKDAELIEPKWMREKIKEEIYKMQKKYNNNL
>NZ_CP007223.1|WP_075665304.1|296540_297272_+|hypothetical-protein
MIETYVFFKVKNDFIIENSSEKLHGLFFKMLKNTQINTEKLHSQKNKPFSLSPVYEYGYDKSITKFSKNKYFFFRIASIQDDLILSFVKALTLNSTELFLDKYPIYIDEVITETYQNKDIQNEITINFVSPVTFRGPNNINIPIPDPLHIINFLKKYGINDIDYPKITYIEGKSHVMKYSSFKLIGFVGKMKIKTHTPKSYLILHYLGTGYSHAKGMGVTIIDAATTANQKIRYIWKRWGINA
>NZ_CP007223.1|WP_075665303.1|295896_296151_-|30S-ribosomal-protein-S15
MNKEEIIKEFQIHEGDTGSAEVQVALLTARIKHLTEHLKKHPKDYHSRRGLMKLVGRRRKILKYLRNKNPEAYKEVIHKLGLRK
>NZ_CP007223.1|WP_075665302.1|294834_295839_-|tRNA-preQ1(34)-S-adenosylmethionine-ribosyltransferase-isomerase-QueA
MNVSNFDYFLPEELIAQSPVEPRDSSRLMVLNRRTREIEHKIFRDIIEYLKEGDLLVRNVTKVIPARLYGKKATGAKIEILLLEKISEGVWEALVKPGSKVKKGTKIYFDDDRYCICKDWAQEGARILEFNFSDDDLFRLGMAPLPPYIKNQIPFERYQTIYSREKGSVAAPTAGLHFTDELLEKIKENGVEFADLVLHVGLGTFRPVKVEDVREHKMHSERYYVPKETVKKINDTRKNGGRIIAVGTTSVRTLETIARLDKKESYHGKTDIFIYPPFEFKLTDAIITNFHLPKSTLLMLVSAFAGREFILDAYNIAVKMKYRFFSLGDACFIY
>NZ_CP007223.1|WP_075665312.1|311328_313020_-|proline--tRNA-ligase
MRFSQLYAPTLRENPADAEIPSQALLQRAGFIRKIAAGVYTYLPLARKTLLKIENIVREEMNRIGAQEILMPIIQPAELWRKSGRWDDYGPEMMKLKDRHERDFTLGPTHEELVTELVKNELNSYKQLPITLYQIANKYRDEIRPRFGVLRAREFIMKDAYSFHSSWESLDETYKKFKEAYSRILERIGLRYTIIEASSGAIGGNESHEFVAFAEYGESNVLYCDCGYAGSDEKVPYVGNYRVYDEEEKEKELVHTPNVRTVEQVAQFLNVELGRIVKSLIFKGREGFVMALVPGDRELNFEKLKAYLGDQSLQMALPEEIFDKFGVPIGFLGPVGLDGIRIIADNSVKHMKNFVVGGMKKDYHYINVNYGRDFEVNEWTDLIVVEPGDPCPVCGKPLNGERGIELGHIFKLGTKYSETMEIKYMDKDGKLQPFIMGCYGWGISRTLGAIVEQLHDDNGIIWPVSVAPFEVVVTVVGREKEKQFGEKLYKYLLDRGIDVLIDDRDVSPGVKFKDADLIGFPVRVTIGRMYKEGKVELKERKGSSNVIDAKEENIYNSLINILK
>NZ_CP007223.1|WP_075665313.1|313016_314426_-|cysteine--tRNA-ligase
MAIYITNTETGKKEELKTITPGVVKMYVCGPTVYNYIHIGNARPAVVFDAFRRFLEYRGYKVVMVQNFTDIDDKIINEANEWGVDFKDVADTFIVEYWKDAQSLGIRAANFHPRTTDYVSEIVEAVDKLISKGYAYVADNGDVYFSVRSFEKYGTLSGRKIEDLVAGARVEVNDLKKDPLDFALWKAVKPGEPNWNSPWSIGRPGWHIECSVMSQKLLGDTFDIHAGGEDLIFPHHEDEKAQSEALTGKPFARYWMHNGMIVTRGDKMSKSIGNVFLVREAVKRYGKDAVKLFLLSKHYRTPIEFSDEILMENKKASLRIIKTLNRFEEKHPYPLVPKRDEYMKEVESKFIESLEDDFNTPKAIALIFDLSKELNKAMDDGNDKEALKRYHLITRVFGSVLGLFEGGVKIVDSNEEKVLDEILKVRQEFRKEKNYQAADKIRDALKNAGIKILDTPDGTKWEKFTEVNE
>NZ_CP007223.1|WP_075665314.1|314430_315852_-|glutamate--tRNA-ligase
MARLRFAPSPTGYLHVGGARTALFNFLYARKMNGKFILRIEDTDLERSEKEYEKGLINALKWLGLDWDEGPDVGGEYGPYRQSERLDIYHKYAQKLLDEGKAYEVYAYPEEIEQLREKLLSEGKPPHYTREMLEAFATPERIKEYKNKGLKPAIYFLMPRKEYVLNDIVKGEVVFKEGTVGDFAIIRSNGVPIYNFACVIDDYLMKITHVLRGDDHLSNTVKQIALYEAFGWETPNFGHVSMILGPDAKKLSKRHGATSVEEFRDRGYLPQAVVNFLALLGWSHPDGKEIMSLNELINAFSLERLGKNPAIFDPKKLKWMNAEHFRKLDEEVMLDVSKKYLLKFVSKEDIDTNKEWYVRLLKSIKDRVEELSEIPHLVDFFFNEPDVEIQLSNEVKEVYRKLVEELRKIDEWNEKVIFKVFKEAMKNSKVKGKEFYMNLRIVLTGREEGPELVDIVYLLGREKMIKRLEKHLG
>NZ_CP007223.1|WP_075665315.1|316008_317217_+|uracil-permease
MDFESTLGIYQNVNGWKKVILALQHFLAMFGATVLVPLLTGLDPLVALFTAGLGTLTFHFITKKIVPVFLGSSFAYIAPIILVKEKTGDLRYATGGIVVAGAVYLIFSLLIKMIGTEKIKKLFPPVVTGPMIMVIGLSLSPVAIDMASKNWSVAIIVIITIILSTTVFKGLFNLIPILIGIGVGYVFSLITGNVDLTPMKNSAFVSVPKFMLPKFDISSILLIAPVAIATFMEHIGDITTNGAVVEKNFIENPGLHRTLIGDGIATMIAGVLGGPANTTYSENTGILALTKVYDPSVLRLAAIFAIFMSFFSKFGSILQTIPTAVIGGVSLILFGMIASVGLRTIVNEKVDFSKPKNLIVSSLILTLGIGGASFTIGSIELKGLALAAIVGIIANLVIPEKK
>NZ_CP007223.1|WP_075665316.1|317227_318199_-|acyltransferase
MRIKEIDIAKGFLMVLIIFAHSYAPERYVSYVSNVLASFMFISGFLFKEESFYLKLKKIFLNILVPFYFMTTIGYFLYFAINKVLHLTTDVFSTFFDFIIFGYAPIDIPVNVLPLWYLYMFSIAEICFVIFVRLKVTYLIPLFSILSTILVNVQTKFFKLEVVFHGLVWFYLGWLFKRKGFNFKVKKPLLLLGISGFLIFLLTGLNGFNDWREANYGNYPLISYVVEFFTLIFVISFSNLVVSRKIEGFFMLFGKFTLFVLGYHIVIPGLFMPLIKDPLLFLEKFWLLNYFIMVFFMYLIIKFVPEKLLYFLSGQFYIKKASG
>NZ_CP007223.1|WP_075665317.1|318308_319601_+|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MKKIHIKTYGCQMNENDSEIAKFYLEEAGYEITENEKDADIVILNTCVVRKKSEDKFYSHIGELKKQNKIIGVMGCGAEKEKENLFKRGVKFVIGTRAILFVPKAVEKAIKGKKSAYFEDKLDEINYPNILKRNSKHHAWITIIYGCNRFCTYCIVPYTRGREKSRKEESILSEVKNLAKNGIKEITYLGQNVDAYGKDLQDGSSLAKLLNQTTKIEGIERIWFLTSYPTDFSLDIAHEIAKSPKIAKSIHLPVQHGSNKILKKMNRRYTIEEYEELISQIRKIVPDASISSDIIVGFPDETEEDFEKTVELVKKIKFERLNLAIYSPREGTIAWKYFKNNVPRMVKTKRMAYILNLQKQINKKLNEKYLDQTVEIIVETKAKSGLYYGRDIRNKIIAFEGDKSLIGKKILVKIKKTTAGPLYGDLVKII
>NZ_CP007223.1|WP_075665318.1|319614_320478_+|YitT-family-protein
MAKNIPIKELIREYILSTIGVILTALGLVIFLIPNNIAAGGASGLAIILHSVVPIPVGIWMYIINAVLFLIAFIIIGFDFSYKTIYCTFLLNFFIDFFDRVVKIPTYNGNDLMLAVFFGDILTAIGMAITFSQNASTGGTDIIAKIFNKFFSSPMGTTLLVIDFFIGFMAGVAFDPKIGMYSILAIIINGTTIDFVLKGLELAITVTIISDNNKPIEDFILRNMGRGFTYLKGKGGYTKKDRDIIFVSIRRRELSELMYFIRKVDPNAFVIVNESRYVLGEGFKRNL
>NZ_CP007223.1|WP_075665319.1|320487_321018_+|cysteine-hydrolase
MKALIIIDMQNDFAKEGGTLYFKGAENVIPHILRLISNAKKENIPIILTQDWHEENDEEFKIWTKHCVKNTDGAKIIDEILKLIKDYNNVYFIKKTRYSAFYNTNFDKIIKKLNITEVDLAGLVSNICVLFTAEELRNRDIKVNLFKNATNSYDQKLHELSLRLMDEVLKINIKEV
>NZ_CP007223.1|WP_075665320.1|321019_321952_+|cation-transporter
MNIKKVTFLAVITNIFLAVIKIITGILFNSIAILADGIDSSTDIITSLVTFFATRLSVKPPDKLHPYGHSKIENIGAKIISFVIFYAGISLFIESTKKFVTKEYFQIIGILPLVVTLISITFKTILFLIEYTYGKKYNSSSLVAEALNMRNDILLSSLVFLGVFLNKLGLEWMDPLVGMVMSAIIIKVAFEIFTENAYVLLDGITPKDTWIYDTIINVCNNCNGIKNPHKIRVRKIGNVYDINMDIEVDPNMTVKESHNLTKCLKEKLIKITNNKIYDVVIHIEPFENKENEPYGIGGKNEENHNHSIND
>NZ_CP007223.1|WP_075665321.1|321899_323006_+|tetratricopeptide-repeat-protein
MGSGGKMKKIIIILLMISIFSFSISKNEIIELSKKNPELSWKKYLEYVLENPTDTSIEKLGKKIKIKIQIKDKENLNFLIKEDINGLRNYLKETSPSTKILNLINFFFPQVESLVKDSIENPKYDSFAENIIFLKITDPKIETKKAAKELTNFFLKYPTMLTYNVVSLFKNKSFSKDLGFNILNYIVQNINNFDEEKYPILNRIVDFSKSIGGTYTSKYLLDLEKYVEILEKINENKIENVNLEKLQINNLSIKKDILLQKISKYNSPHIINKTNNTKNELKPSKSSNTFELFLLIILFGLISSFRIVRFYIFYTLRLKKIAALTYKKIVEKDPMNEEKHLKLAQLYEEAGMYDEALQEYNLIKRIKI

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Crispr_ID: NZ_CP007223_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007223_3

624605-625388

Orphan

Consensus_repeat	Method
GTTTCCATTCCTCATAGGTATGTTCTAAAC	PILER-CR
GTTTAGAACATACCTATGAGGAATGGAAAC	CRISPRCasFinder
GTTTAGAACATACCTATGAGGAATGGAAAC	CRT

11 spacers

The CRISPR arrays of NZ_CP007223_3

>merge|NZ_CP007223|3|624605-625388|PILER-CR,CRISPRCasFinder,CRT
GTTTAGAACATACCTATGAGGAATGGAAACTTATTGCTGCCAATCATTACACTTGGGCCTCTTTTGTTTAGAACATACCTATGAGGAATGGAAACTCTCAAAGGGGAATATTCTTACTATATCCACTATTTCAACGTTTAGAACATACCTATGAGGAATGGAAACTCCTTCTCGAAGGCGGTGAAGCCAGAGTCTTCGGCCAGTTTAGAACATACCTATGAGGAATGGAAACTTCAAATATTTCATCATCTGTTGCAATATCATTAAATTTTTGTTTAGAACATACCTATGAGGAATGGAAACGTTTTTCGCCGTCTCTAAATAAAGATTTGACTTTTAAATTCAGTTTAGAACATACCTATGAGGAATGGAAACCAAAAACAGACTTAATTTTTATTTTTAAGTTCATTTTATGTTTAGAACATACCTATGAGGAATGGAAACTGTCCTTGTTCAATCAAATATTTAAGCTTTTTATAGTTTAGAACATACCTATGAGGAATGGAAACCGGTGGTATCGGTGGCAGCCACCTCTGCGGCCACCACCAAGTTTAGAACATACCTATGAGGAATGGAAACTAGATATTCAAAATCGTCACTGTTGATAATGTCTATTCTTGTTTAGAACATACCTATGAGGAATGGAAACATCATACTCTAATGTACCATTGTAACCCAAATAATCGTTTAGAACATACCTATGAGGAATGGAAACAATTAAATATTTTCTTAAAAAAAGACGAGGAGTTAAATCGTTTAGAACATACCTATGAGGAATGGAATT

>NZ_CP007223|3|4|624605-625388|PILER-CR
GTTTAGAACATACCTATGAGGAATGGAAAC	TTATTGCTGCCAATCATTACACTTGGGCCTCTTTT
GTTTAGAACATACCTATGAGGAATGGAAAC	TCTCAAAGGGGAATATTCTTACTATATCCACTATTTCAAC
GTTTAGAACATACCTATGAGGAATGGAAAC	TCCTTCTCGAAGGCGGTGAAGCCAGAGTCTTCGGCCA
GTTTAGAACATACCTATGAGGAATGGAAAC	TTCAAATATTTCATCATCTGTTGCAATATCATTAAATTTTT
GTTTAGAACATACCTATGAGGAATGGAAAC	GTTTTTCGCCGTCTCTAAATAAAGATTTGACTTTTAAATTCA
GTTTAGAACATACCTATGAGGAATGGAAAC	CAAAAACAGACTTAATTTTTATTTTTAAGTTCATTTTAT
GTTTAGAACATACCTATGAGGAATGGAAAC	TGTCCTTGTTCAATCAAATATTTAAGCTTTTTATA
GTTTAGAACATACCTATGAGGAATGGAAAC	CGGTGGTATCGGTGGCAGCCACCTCTGCGGCCACCACCAA
GTTTAGAACATACCTATGAGGAATGGAAAC	TAGATATTCAAAATCGTCACTGTTGATAATGTCTATTCTT
GTTTAGAACATACCTATGAGGAATGGAAAC	ATCATACTCTAATGTACCATTGTAACCCAAATAATC
GTTTAGAACATACCTATGAGGAATGGAAAC	AATTAAATATTTTCTTAAAAAAAGACGAGGAGTTAAATC
GTTTAGAACATACCTATGAGGAATGGAATT

>NZ_CP007223|3|3|624605-625388|CRISPRCasFinder
GTTTAGAACATACCTATGAGGAATGGAAAC	TTATTGCTGCCAATCATTACACTTGGGCCTCTTTT
GTTTAGAACATACCTATGAGGAATGGAAAC	TCTCAAAGGGGAATATTCTTACTATATCCACTATTTCAAC
GTTTAGAACATACCTATGAGGAATGGAAAC	TCCTTCTCGAAGGCGGTGAAGCCAGAGTCTTCGGCCA
GTTTAGAACATACCTATGAGGAATGGAAAC	TTCAAATATTTCATCATCTGTTGCAATATCATTAAATTTTT
GTTTAGAACATACCTATGAGGAATGGAAAC	GTTTTTCGCCGTCTCTAAATAAAGATTTGACTTTTAAATTCA
GTTTAGAACATACCTATGAGGAATGGAAAC	CAAAAACAGACTTAATTTTTATTTTTAAGTTCATTTTAT
GTTTAGAACATACCTATGAGGAATGGAAAC	TGTCCTTGTTCAATCAAATATTTAAGCTTTTTATA
GTTTAGAACATACCTATGAGGAATGGAAAC	CGGTGGTATCGGTGGCAGCCACCTCTGCGGCCACCACCAA
GTTTAGAACATACCTATGAGGAATGGAAAC	TAGATATTCAAAATCGTCACTGTTGATAATGTCTATTCTT
GTTTAGAACATACCTATGAGGAATGGAAAC	ATCATACTCTAATGTACCATTGTAACCCAAATAATC
GTTTAGAACATACCTATGAGGAATGGAAAC	AATTAAATATTTTCTTAAAAAAAGACGAGGAGTTAAATC
GTTTAGAACATACCTATGAGGAATGGAATT

>NZ_CP007223|3|3|624605-625388|CRT
GTTTAGAACATACCTATGAGGAATGGAAAC	TTATTGCTGCCAATCATTACACTTGGGCCTCTTTT
GTTTAGAACATACCTATGAGGAATGGAAAC	TCTCAAAGGGGAATATTCTTACTATATCCACTATTTCAAC
GTTTAGAACATACCTATGAGGAATGGAAAC	TCCTTCTCGAAGGCGGTGAAGCCAGAGTCTTCGGCCA
GTTTAGAACATACCTATGAGGAATGGAAAC	TTCAAATATTTCATCATCTGTTGCAATATCATTAAATTTTT
GTTTAGAACATACCTATGAGGAATGGAAAC	GTTTTTCGCCGTCTCTAAATAAAGATTTGACTTTTAAATTCA
GTTTAGAACATACCTATGAGGAATGGAAAC	CAAAAACAGACTTAATTTTTATTTTTAAGTTCATTTTAT
GTTTAGAACATACCTATGAGGAATGGAAAC	TGTCCTTGTTCAATCAAATATTTAAGCTTTTTATA
GTTTAGAACATACCTATGAGGAATGGAAAC	CGGTGGTATCGGTGGCAGCCACCTCTGCGGCCACCACCAA
GTTTAGAACATACCTATGAGGAATGGAAAC	TAGATATTCAAAATCGTCACTGTTGATAATGTCTATTCTT
GTTTAGAACATACCTATGAGGAATGGAAAC	ATCATACTCTAATGTACCATTGTAACCCAAATAATC
GTTTAGAACATACCTATGAGGAATGGAAAC	AATTAAATATTTTCTTAAAAAAAGACGAGGAGTTAAATC
GTTTAGAACATACCTATGAGGAATGGAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007223.1\|WP_075665592.1\|623189_623975_+\|flagellar-basal-body-rod-protein-FlgG	unknown	unknown	gnl\|CDD\|183687
NZ_CP007223.1\|WP_075665585.1\|614320_616852_+\|type-I-pullulanase	unknown	unknown	gnl\|CDD\|273975
NZ_CP007223.1\|WP_088368853.1\|626282_626933_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP007223.1\|WP_075665587.1\|617339_620066_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_CP007223.1\|WP_075665602.1\|633952_634963_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NZ_CP007223.1\|WP_075665593.1\|625560_626286_-\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP007223.1\|WP_075665586.1\|616895_617255_+\|response-regulator	unknown	unknown	gnl\|CDD\|381106
NZ_CP007223.1\|WP_075665599.1\|630775_631324_-\|DUF177-domain-containing-protein	unknown	unknown	gnl\|CDD\|376863
NZ_CP007223.1\|WP_075665595.1\|626945_627683_-\|basic-amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270342
NZ_CP007223.1\|WP_075665584.1\|612310_614305_+\|maltodextrin-glycosyltransferase	unknown	unknown	gnl\|CDD\|200474
NZ_CP007223.1\|WP_075665591.1\|622473_623175_+\|flagellar-hook-basal-body-protein	unknown	unknown	gnl\|CDD\|227125
NZ_CP007223.1\|WP_075665598.1\|630574_630757_-\|50S-ribosomal-protein-L32	unknown	unknown	gnl\|CDD\|237038
NZ_CP007223.1\|WP_075665589.1\|620600_621470_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP007223.1\|WP_075665601.1\|632343_633948_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NZ_CP007223.1\|WP_075665588.1\|620103_620604_+\|TIGR00725-family-protein	unknown	unknown	gnl\|CDD\|129808
NZ_CP007223.1\|WP_075665597.1\|629570_630572_-\|phosphate-acyltransferase-PlsX	unknown	unknown	gnl\|CDD\|235414
NZ_CP007223.1\|WP_075665583.1\|611680_612253_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP007223.1\|WP_075665590.1\|621456_622464_+\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237564
NZ_CP007223.1\|WP_075665596.1\|627796_629602_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP007223.1\|WP_075665600.1\|631372_632332_+\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594

Protein	Function_ID	Function_description	E-value
NZ_CP007223.1\|WP_075665592.1\|623189_623975_+\|flagellar-basal-body-rod-protein-FlgG	gnl\|CDD\|183687	PRK12693, flgG, flagellar basal body rod protein FlgG; Provisional.	1.30782e-128
NZ_CP007223.1\|WP_075665585.1\|614320_616852_+\|type-I-pullulanase	gnl\|CDD\|273975	TIGR02104, pulA_typeI, pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.	0
NZ_CP007223.1\|WP_088368853.1\|626282_626933_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	9.81006e-93
NZ_CP007223.1\|WP_075665587.1\|617339_620066_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP007223.1\|WP_075665602.1\|633952_634963_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	3.25901e-155
NZ_CP007223.1\|WP_075665593.1\|625560_626286_-\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.17698e-156
NZ_CP007223.1\|WP_075665586.1\|616895_617255_+\|response-regulator	gnl\|CDD\|381106	cd17554, REC_TrrA-like, phosphoacceptor receiver (REC) domain of Thermotoga maritima response regulator TrrA and similar domains. Thermotoga maritima contains a two-component signal transduction system (TCS) composed of the ThkA sensory histidine kinase (HK) and its cognate response regulator (RR) TrrA; the specific function of the system is unknown. TCSs couple environmental stimuli to adaptive responses. TrrA is a stand-alone RR containing only a REC domain with no output/effector domain. The REC domain itself functions as an effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	8.91136e-55
NZ_CP007223.1\|WP_075665599.1\|630775_631324_-\|DUF177-domain-containing-protein	gnl\|CDD\|376863	pfam02620, DUF177, Uncharacterized ACR, COG1399. This family is nearly universally conserved in bacteria and plants except the Chlorophyceae algae. Thus far, mutantional analysis in bacteria have not established a function. In contrast, mutants have embryo lethal phenotypes in maize and Arabidopsis. In maize, the mutant embryos arrest at an early transition stage.It has been suggested that family members specifically affect 23S rRNA accumulation in plastids as well as bacteria.	2.6382e-22
NZ_CP007223.1\|WP_075665595.1\|626945_627683_-\|basic-amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.4271e-97
NZ_CP007223.1\|WP_075665584.1\|612310_614305_+\|maltodextrin-glycosyltransferase	gnl\|CDD\|200474	cd11335, AmyAc_MTase_N, Alpha amylase catalytic domain found in maltosyltransferase. Maltosyltransferase (MTase), a maltodextrin glycosyltransferase, acts on starch and maltooligosaccharides. It catalyzes the transfer of maltosyl units from alpha-1,4-linked glucans or maltooligosaccharides to other alpha-1,4-linked glucans, maltooligosaccharides or glucose. MTase is a homodimer. The catalytic core domain has the (beta/alpha) 8 barrel fold with the active-site cleft formed at the C-terminal end of the barrel. Substrate binding experiments have led to the location of two distinct maltose-binding sites: one lies in the active-site cleft and the other is located in a pocket adjacent to the active-site cleft. It is a member of the alpha-amylase family, but unlike typical alpha-amylases, MTase does not require calcium for activity and lacks two histidine residues which are predicted to be critical for binding the glucose residue adjacent to the scissile bond in the substrates. The common reaction chemistry of the alpha-amylase family of enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP007223.1\|WP_075665591.1\|622473_623175_+\|flagellar-hook-basal-body-protein	gnl\|CDD\|227125	COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion].	3.59172e-57
NZ_CP007223.1\|WP_075665598.1\|630574_630757_-\|50S-ribosomal-protein-L32	gnl\|CDD\|237038	PRK12286, rpmF, 50S ribosomal protein L32; Reviewed.	1.06319e-20
NZ_CP007223.1\|WP_075665589.1\|620600_621470_+\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	1.07287e-18
NZ_CP007223.1\|WP_075665601.1\|632343_633948_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	1.15788e-124
NZ_CP007223.1\|WP_075665588.1\|620103_620604_+\|TIGR00725-family-protein	gnl\|CDD\|129808	TIGR00725, TIGR00725, TIGR00725 family protein. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE. [Hypothetical proteins, Conserved].	1.26309e-48
NZ_CP007223.1\|WP_075665597.1\|629570_630572_-\|phosphate-acyltransferase-PlsX	gnl\|CDD\|235414	PRK05331, PRK05331, phosphate acyltransferase PlsX.	9.82252e-154
NZ_CP007223.1\|WP_075665583.1\|611680_612253_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.12775e-15
NZ_CP007223.1\|WP_075665590.1\|621456_622464_+\|rod-shape-determining-protein	gnl\|CDD\|237564	PRK13930, PRK13930, rod shape-determining protein MreB; Provisional.	0
NZ_CP007223.1\|WP_075665596.1\|627796_629602_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP007223.1\|WP_075665600.1\|631372_632332_+\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.7256e-13

>NZ_CP007223.1|WP_075665592.1|623189_623975_+|flagellar-basal-body-rod-protein-FlgG
MINGLYTAATGMWAQQFKLDTLSNNIANVDTAGYKKVKTEFQDLLYDYSKNAGAATAQNSLHPTGIYVGHGTKLSATTRIFTQGNLERTGNSLDLAVSGDGFFQVQLQDGRIAYTRDGQFKVDGNGRIITSNGNLLSPNIVVPQNAVALSISPDGIVTAELQDGTLQNLGTITLVRFINPSGLKAIGDNLYLETPASGAPVEGTAGQDGFGTILQGYVEKSNVDIVKEMVDMISAMRAYELNSRTVQTADEMLRTASNMKR
>NZ_CP007223.1|WP_075665591.1|622473_623175_+|flagellar-hook-basal-body-protein
MYKGIYLASMGMLADITKLDTLSNNISNAETAGYKSDSLAFKAYFDKNLYSFNPMPQEKKVEIKKIGNFEQALILDQVKTNLSQGVIEHTGNALDFAIDGEGFFVLENNGKRLYTRAGNFKVNDEGFLVNSDGAYVLGKDGQKLKADDNLIEKILVVDLENPKKIGYTFFEGQEKAKKNFRILQGYIEKSNVNIVREMVKMIEATRHYETLSKAVTVHDELLNKSINSAGSLK
>NZ_CP007223.1|WP_075665590.1|621456_622464_+|rod-shape-determining-protein
MGKNDLGIDLGTANFLVYQKGKGIVLYQPSVVAISKKTGKIIAIGDEAKEMIGKTPEESIVAIRPMKDGVIADYTIISEVLKMFIKKVTKGFFLKPNMVIGIPAKTTTVEKRAVFDAAMSAGAKKVYVVSEPLAAAIGAGIDVTKPEGNIIVDIGGGTTDIAVISLGGVVVGDSVKLAGDSMDDSIVKSVRKILGLIIGESTAEEIKKRIGKAHPEVEDFEMDVKGRDAVTGLPRTDKLNSNDVYKILKPIIENLISRIKVVLEKTPPELSADIMEKGIVITGGGALLRGIDKAIYDEIGVPCKIAEDPLTCVARGTGILLEDEELLNEVAVTYE
>NZ_CP007223.1|WP_075665589.1|620600_621470_+|DMT-family-transporter
MRYLPLTLVVLFWGLSFISTSVVVKEISPLFAAFMRFLIALLVLFIVPKKRKIDLFNIHKILAGFWGITMYFVAENFSLKFTTPTNAAMIVSTAPIWYILFTQIVHKKKTHIFQYIGSTIAIVGVGLVILNGRLYLNVNPIGDLLAFGAALSWVFYTHHIVKLSDHSSITAVFEITFWGVVTLIPFTFVEYAYFTPKIIFSINVVFGLLYLGILCSAVGYILWNKSIEILGDRTTTNAVYIIPIVTAIFENILFKRWPTFLLVSGIILVVTGVYIFEKFEERREKYGKE
>NZ_CP007223.1|WP_075665588.1|620103_620604_+|TIGR00725-family-protein
MKKVAVIGYSGEIDQKLEKICFLLGKALSKKYIVLTGGRDGVMEAVSKGVKSENGTCIGILPFEEKGNAYNFLDITTGLDFQMRSFILLKNADAVISVGGEIGTAIEILGAYAYGKPLILFNETGGWTDRIQKVLIEGKYLDNRKIVEIKIASSIEEILKILEDLM
>NZ_CP007223.1|WP_075665587.1|617339_620066_+|isoleucine--tRNA-ligase
MDYKETLNLPSTQFSMRANLVKKEPEMLKKWEEMDDYKLVLQSREGKPKFVLHDGPPYANGNIHIGTATNKILKDIVIRYKTMRGYYAPYVPGWDTHGLPIEHRVSVEMGEKIKEMSPVEIRKKCKEFALNFVDIQREQFKRLGVRGDWDNPYLTLDPKYEVHILNIFKTLVKNGNVYRGNKPVYWCPTCKTALAEAEVEYHDHSSPSIYVKFELEKDTYIVIWTTTPWTLPANVAIAVHPDYDYVKIKVNNEYWIVAEGLLNKFAAETEIEYTIVEKFKGKDLEYKKAKHPFIDRDSLVVLADYVTLEDGTGCVHTAPGHGAEDYLTGLKYNLPVLSPVNEEGVFTKEAGKYAGLKIWDANKVIIEDLEKSGALIKTHKIEHSYPHCWRCKNPVIFRATPQWFISVDKNGLREKVLDEIKKVEWHPKWGENRITAMVKERPDWTISRQRVWGTPIPAIKCKNCGEVFLDEKVIDNFIKIVQEKGTDAWFELSEEELIPKDVKCPKCNSTSFEKTYDTLDVWIDSGCSFEAVIRSNGEKFPVDLYLEGDDQHRGWFQSSIFMSVAHTNMAPYKTVVTHGFIKDEHGRKMSKSLGNVIDPKEIVDKYGADILRLWVSSIDFFDNIRVGKNIIQQQVEVYKKIRNTIRYLLGNLSDFEEKHILPFEKLLPLDKWALGRLQEVISQVTDHFEKFEYSKVYSLLNKYCTVELSATYLDIIKDRLYVEAKDSIYRRSAQTVMYYILQALVKMLAPILVFTAEEAYQLSPFKKYETVHLELWPEVKEEFIDKEIMEDFKMLLLVRDDVLKALEEARKNNIIGHSLDANVTLEGANEHVQNIIEKYEEYLAEFFIVSDVKVGSGNIKGEFSSVKVEKAQGEKCQRCWKYSKDVGKDEVYKDVCPRCAAVLKGERK
>NZ_CP007223.1|WP_075665586.1|616895_617255_+|response-regulator
MSKKRILVVEDEDNMRLLITEELEESGYEVDEARNGQEALEKFRSKEYDLVTVDIEMPGMNGLEVAGKIREMKKDAKIIILTAYSHYKSDLASWAADAYVVKSSDLTELKDTIAKIINM
>NZ_CP007223.1|WP_075665585.1|614320_616852_+|type-I-pullulanase
MKKVFVFLFVLLSLIAISSTTIVVHYHRFDDNYNGWNLWIWPMKPVAMDGKSYAFTEKDDFGVVAKIVLDMDLEQVGIIVRLNEWQAKDVAKDRFIDIKDGKAEVWILQGVEEIYTKKPDTKPRVFFAAAKASNIIEAYLTNAIDTKTFKGVKVTVDGKEKKVSKIEKADPTDLSKTNYIKIVLETPLTEDDFRKDVKLLIEGFSPSTVYMLDILDNLYFDGKLGYIYSKDSTLFRTWSPVSKTAQVLLYKNGEDKKPYKVVNMTYVGNGVWEAKVDGDLDGIFYKYRFESYGKVRETVDYYSKAVYKNSLKSAVVDLSKTNPKDWKNDTRPYMEALEDAIIYEIHIADMTGLDNSGVKNKATYLGLVEENTTGPGGVTTGLSHLVELGVTHVHILPMFDFYTGDEENKDFEKSYNWGYDPYLFTVPEGRYSTDPKNPYTRIFEVKKMVQKLHEKGIRVILDMVFPHTFGIGQLSAFDQTVPYYFYRLDKTGAYLNESGCGNVIATERPMMRKYIIDTLLYWINEYHVDGFRFDQMGLMDKKTMLSLEKKIHAIDPTIILYGEPWGGWGAPIRFGKSDVANTHIAAFNDEFRDALRGSVFNEKVKGFLMGAIGKETRVKRGVVGSIHYDSRIKSFASDPEETINYVACHDNHTLWDKNALAAKYDKKYKWTDEMLKNSQKLAGAILLTSQGIPFIHAGQDFARTKKFNENSYNAPISINGLDYQRKYEYLDVFEYYKGLINLRKQHPAFRMTTAEEIKKHLKILSSRKRRVVSFIIHDNARNDTWKDILVIYNGNVNSIEYDLPEGNWNLVVNGETAGTKVIKTVSGKLVLEGISAYVLYKNE
>NZ_CP007223.1|WP_075665584.1|612310_614305_+|maltodextrin-glycosyltransferase
MLKNLEKYLKSKITGHKNYAIPKLWIKGYEYLYGNIFEEKGENIFVDPFEFFYKVVSYINQQRENLDYAKPISFHTKEKNWEKKAIMYGTLPRMTTAFNHKGFGNFEEVDILGYKEAGTFLKMIAFLMYLKNFNVNTLYMLPISKNSNLFKKGSIGSPYAVKNPLKLDEGYHDPLLEDFTVEDEFKALVEAAHILGIRVVLDFIPRTASRDSDLIKEHPDWFYWIKIDDLSEYKPPKVEELPFKIPDKEDIQLLYRNKEVRKHLKKFVDSPDKLDPKKWEKVKNMDGNILVNIIKEFGVVTPPGFSDWINDPQPTWDDVTFLRLYLDNPADAKDYISKDQKPYILFDVIKSSKFPGNVPNKELWEYISNIIPTYQQKFGIDGARIDMGHALPAKLQEMIISKAKKIDPYFVFIAEELEIENDKKSKADGYDVILGNSWYVAPRKDEIYKFIEEKAKKLVIPFIASVETPDTPRIMAREFGNKLKYLSPFLLYFSPNGIPYINSGQEIGEIQPMNLGLDNTIWGKTLLPPDDEFYSKLAFFDHYALHWSKYDKETFEFLRKLLFIRKKYDNFVLNGEFKYVYFNYQDGFLANYSYWIGDKGIIIVGNLDLSWERNVEIYLENTVGKNLDVKNIKIWNRDESFYPPEKVVKLNLESGGFALIIVNE
>NZ_CP007223.1|WP_075665583.1|611680_612253_+|TetR/AcrR-family-transcriptional-regulator
MKNKIIEVAIKEFAKKGFFAASTNTISTNAHVSKGAIFYHFKSKENLYLICFKSIISLFEKELDLFLKKNPNLDFFNLILKWSKKKIEIINKQKYILDFLETTKNLPKSLEEKIQTILRENYTKYMPVLREKFEKVELKEGLDREFTFSIVLDFFDTFSRRYNNTSYIPDKMLSEFENVIKIIKYGISKY
>NZ_CP007223.1|WP_075665593.1|625560_626286_-|amino-acid-ABC-transporter-ATP-binding-protein
MILEVRDLHKSFGELKVLKGVNLRVEKGETIVIIGPSGGGKSTFLRCINHLEDYQKGEVIFLGKKIKKDKSINEIRTKIGMVFQHFNLFPHMTVLENLILAPTKVLKMPKEKAVEKAKSLLDRVGLSEKIEYYPDNLSGGQKQRVAIARALMMDPVLMLFDEPTSALDPELVGEVLEVMKDLAKSGMTMIVVTHEIGFAREVADRIIFMDKGVIAEEGKPEEIFKEPKNQRTKEFLRHILK
>NZ_CP007223.1|WP_088368853.1|626282_626933_-|amino-acid-ABC-transporter-permease
MEAIEVVLENLPFLLLGAWDTLKLTFFSVLIGLILGTFIGMGRLSKLKVINIPSTVYVEFLRGTPLLVQISIVYFGLPQLGIQLEAYPAAIVALGLNSGAYIAEIVRAGIQSIPKGQYEAARSLGMSHFQTMRYIILPQAFKNILPALGNEFITLTKDSSLASIIGVTELMRRGQFVITRTFQTFSIYFGIAIIYFVMTFTISRIVRVIEKRMEIA
>NZ_CP007223.1|WP_075665595.1|626945_627683_-|basic-amino-acid-ABC-transporter-substrate-binding-protein
MRKLVAVLFIVFIVSVFFTASLSKIKERGILIVGTEPTFPPFEFVDQNNNIVGFDIDIAKKIASELGVKLKILNLPFDSLIPAIMSDKIDLIIAGMTITNKRAKVIDFSIPYFNANQSIVVRKGENFSPKSLEDLKGKKVAVQLGTTGDLVVSKIKGIKVTRFQKFTDAFLELQNKRVDAVVLDEAVANAYVKKFQKFLISSVIDTGEKYGIGVKKGNKELLDFVNSVISNMFKSPYDILVEKWF
>NZ_CP007223.1|WP_075665596.1|627796_629602_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGIVGTEFNLKELVEDLQKLEYRGYDSAGVAFYDNGKISIQKSIGKIKNLKSKIPQKKTSIGIAHTRWATHGIPNDINAHPHTDCTGKIAIVHNGIIENYYELREMLKSKGHVFKSDTDTEVIAHLIEEHFKGDLYIAVLDAIKLLKGAYAIVVMHSDFSNMLVAARKGSPLVLGRGKDKVVLASDVTPILRYTKDVVFLEDGDVVLLKDGEYKITDLGGNVVLRKVYHIDWDEASAEKSGYKHFMLKEIMEEPEAIESALVGRVTLEGPVLNELKEFNVERVEKIKLVACGTSYHAGLVFKYFFEKHSNIDVEVDVASEFRYRNIHVDDNTFVIAISQSGETADTLESVRLVKRKGAKVISISNVVGSTITRESDVTVFMNAGPEIGVAATKTYVNQLIVLYILGMHLLRIKGIWNEELQRDFEFLKQAPEIFRKILNNIDLEEISSYYKNYHHFMYIGRGINYPTALEGALKLKEISYINATAYPAGELKHGPIALLDPTFPVFAIAPKDNLFEKTKSNIEESKARNSRIIAITNESNKELEKIVDDIIYVPDSPDDMYPLTISPVIQLFAYLIADMRGYDPDKPRNLAKSVTVE
>NZ_CP007223.1|WP_075665597.1|629570_630572_-|phosphate-acyltransferase-PlsX
MKKIAIDLMGGDFAPAKIVAGALAFAKDNPDVELYLVGIEKNFKEISLPSNCRKVVVEDYLPMDVKPTEAIRRKNSTMYQSCKLARDNVVDAVVSAGNTGALLACATFVVGRIKGIERPTLAVPIPTKDGFCILADAGANIDVKPFTLLQFAIMGVEYAKFMGIKNPKVGLLNVGTEENKGTKKEQEAFRLLREKFGESFKGNIEGNDINMGKVDVVVADGFHGNIAMKTMEGSAKLIIEILKSNIKKNVISALGALLMKPVFNKLKEKLDPRKYGGTFFVGVNGIVVKAHGNSDEVAIYHALKVAKQGIEISLTSKIEEAIKDVWNSRDSGN
>NZ_CP007223.1|WP_075665598.1|630574_630757_-|50S-ribosomal-protein-L32
MAVPKQKRSRSRTHHKRAKIYKAFSVPVSVCPNCGAPKLPHRVCLNCGHYGKKQIFEVAE
>NZ_CP007223.1|WP_075665599.1|630775_631324_-|DUF177-domain-containing-protein
MIWKIKVKDIIAKRHMKIEDDYYTETINLHTGTYKVIDNVFHVKISIVYTDNTIIVGGVVKGKIERPCDRCLETSILELEGTIEGIYDLESEPNFKDSEIENLKNVIYYKGEVIDLEERIIEALVVSAPDVFVCDENCKGLCQYCGENLNLHPDHKCEKMEEFSIDPRFEKLLKLKEKLSNN
>NZ_CP007223.1|WP_075665600.1|631372_632332_+|lytic-transglycosylase-domain-containing-protein
MKKAFYIFLLIVTSTLYAFMLDPLNYITKSNLGLQVQFYNNAGKISIYTPYVYKIVSYNTFTDTMRFPEIVKGLAYIESGFNIHALSNIGAMGVAQFKANAALDYGVNNAWNPKQALLGADRMIRFYYQKYQDIYTVLAIYNIGETNYKKGKYLDAGKNYARKVITASRKISRNTNLYDRYVLYLQSGFLNESTNTSFFEIGSIFDYLGIIYFDISSKLIIQENNYPIEIGGKSYFRLDHFSSIVFGYNLRYNINISIGPILGYSHFEPVGTNYELSYDFSKGFSLKNFQFEVGYGNKYWRIGLGFDPDFENFYLRFLY
>NZ_CP007223.1|WP_075665601.1|632343_633948_+|flagellar-M-ring-protein-FliF
MEWFRKFLDSLSNIPNFWKKLNKNQKIAFTSLILAIVFALVVAVVLNAPKYVLLITANNETDAGAIIQQLESQGIPYKVEAGNRIFIPSSYNVYEVRMKLASSGILGASSKGFELLDQSSFGATSFDKQVNYQRALQGELERTIATINGVKYARVHLTLPKYTYYVRGEMAETRASVQLVLEPGATISKEQVKGIIYLLTGAVEGLKPENVKVVDNFGRALSDLVNFDENTYAANTKTELKMQLENYYRNKIQPALETVFGFGKVEVITDINLNWQKIEKTITTYSSPKGGLLRSKETETEKSTVKPADGGPVGTESNIPTTYYQSVEGSNSSLYEKSHEITNYELNQIVENVVQNMEGEIENISVSVIIDSSSTVFNTVSKDEINKLVSNIIQKSIAANASPSNISYSLAFIPFSRELEEQYQQLIQTEQLKKDIVFKITLLLIATVLMFFSSYGILLQIRKSKARKLVLQRYKMLEEEAQKLVEEEGGQEAEEILSEAQKVIEELKDYAKQLAVKSPEETAAIIKIWMSERG
>NZ_CP007223.1|WP_075665602.1|633952_634963_+|flagellar-motor-switch-protein-FliG
MPDKINIPGKRKAAILLVLMGPENAANVLKQLEEQDVETLTIEIANLGKVTDDEKEQVLSEFKELSKAREMLLSGGIDYAKEMLIKAFGPERAMKVIERLVSNLQVKPFEFMKLADPMQVVNFLQSEHPQTIALVLSFLEPPLAAKVLSSLPENIQAEVIKRIALLERASPDVVREIEKNLEKKFSGIGMQTLSQVGGVDTAAEIINNIDRATEKSIMEKLGYESPELAEEIRRRLFVFEDLLKLDDRSVQLVLREVDTRDLAVALKGASEELKEKIFNNMSKRAAQLLKDELEFMGPVRVKDVEEAQQKIINIVRRLEEAGEIVIARGGGEELIV

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Crispr_ID: NZ_CP007223_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP007223_4

909396-911235

Unclear

Consensus_repeat	Method
GTTTCCATTCCTCATAGGTATGTTCTAAAC	PILER-CR
GTTTCCATTCCTCATAGGTATGTTCTAAAC	CRISPRCasFinder
GTTTCCATTCCTCATAGGTATGTTCTAAAC	CRT

27 spacers

cas3HD

The CRISPR arrays of NZ_CP007223_4

>merge|NZ_CP007223|4|909396-911235|PILER-CR,CRISPRCasFinder,CRT
GTTTCCATTCCTCATAGGTATGTTCTAAACATGATATTATGGCAAAATTTATTAATTTAACACCACACACGTTTCCATTCCTCATAGGTATGTTCTAAACATTGTATATAGCAGCTGATTTAAAATTTACAGAGTTTCCATTCCTCATAGGTATGTTCTAAACGAAAAAGAGAATTTTTAGAAACATTTGAAGATTTTAGTTTCCATTCCTCATAGGTATGTTCTAAACGGGAAAATATGGTAATTAAAGTAATAAGAAATAAAAAGTTTCCATTCCTCATAGGTATGTTCTAAACGAAAAATTAAGGATCTTCCGAAATGATATTCGGGAGATTCTTGTTTCCATTCCTCATAGGTATGTTCTAAACAAAAAGAGGAGGGGATGTCATGGAAGTCAAAATATTGAGTTTCCATTCCTCATAGGTATGTTCTAAACTAGTAGGATATGGTTTCGTTGGCAAGGAACATCATAGTTTCCATTCCTCATAGGTATGTTCTAAACTATTAAGTCGATTATATGCGCGACAGGAAGAATTGGTTTCCATTCCTCATAGGTATGTTCTAAACTATTAAGTCGATTATATGCGCGACAGGAAGAATTGGTTTCCATTCCTCATAGGTATGTTCTAAACTGGAAATGGTTGGATGAAAATTTATCAGATGTTTTCATGTTTCCATTCCTCATAGGTATGTTCTAAACTTATTCAATTTAGCAATAGGCAACAAATGTTATATGTTTCCATTCCTCATAGGTATGTTCTAAACATGATAGAATGGGTTTAAAGATTAAGTCTATTTTTAGAAAGTTTCCATTCCTCATAGGTATGTTCTAAACTCGAAGGTGGCGTGATTGAGATAATAAATATAATAGTTTCCATTCCTCATAGGTATGTTCTAAACTGTGCTTGAGGATCAAATCGGTTCTCAGAAATGGGTTTCCATTCCTCATAGGTATGTTCTAAACAAATTGCAGAAATATTGAAACGATATATGGAAGACGGTTTCCATTCCTCATAGGTATGTTCTAAACAAAATGTGCTTGATCAAATCAGTTCTCAAAAATGGAGAGAGTTTCCATTCCTCATAGGTATGTTCTAAACAAAAAAATATCAGAAATATTAAAACAATATATGGAAGACGGTTTCCATTCCTCATAGGTATGTTCTAAACAAATTTTGGAAGCTCCTATTATAGATGATTTTAATAGTTTCCATTCCTCATAGGTATGTTCTAAACCATGAGAAAAGAAATCGAAAAGAAAATTTGGAAATGGCTGTTTCCATTCCTCATAGGTATGTTCTAAACTGAAGTTAAAGTTTTTGAAAAAGACGCAGAAATCAGTCGGTTTCCATTCCTCATAGGTATGTTCTAAACATTATTATGATATTTGTAGAAAAATTTACTGTTCAATAGTTTCCATTCCTCATAGGTATGTTCTAAACTGAAATAACGGACGTGATAAAAATATTCCCCTTCGGTTTCCATTCCTCATAGGTATGTTCTAAACTATTTAGATATGCCAATCAGCAACAGAACGATAAGTTTCCATTCCTCATAGGTATGTTCTAAACATAAATTTAAATAAAGGTGTTTTTTACAGATTATATAGGTTTCCATTCCTCATAGGTATGTTCTAAACTCGCCGCCAATGCCACCGTCGTAATGGCGGTGGCCGTTTCCATTCCTCATAGGTATGTTCTAAACGAAATGGTTGGATGAAAATTTATCGGATAGTTTCATGGGTTTCCATTCCTCATAGGTATGTTCTAAACAATTATTGACGGTTTTCAGAAGTTGAAAGAGAAAATTCGTTTCCATTCCTCATAGGTATGTTCTAAAC

>NZ_CP007223|4|5|909396-911235|PILER-CR
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATGATATTATGGCAAAATTTATTAATTTAACACCACACAC
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATTGTATATAGCAGCTGATTTAAAATTTACAGA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAAAAGAGAATTTTTAGAAACATTTGAAGATTTTA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GGGAAAATATGGTAATTAAAGTAATAAGAAATAAAAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAAAATTAAGGATCTTCCGAAATGATATTCGGGAGATTCTT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAAAAGAGGAGGGGATGTCATGGAAGTCAAAATATTGA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TAGTAGGATATGGTTTCGTTGGCAAGGAACATCATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TATTAAGTCGATTATATGCGCGACAGGAAGAATTG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TATTAAGTCGATTATATGCGCGACAGGAAGAATTG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGGAAATGGTTGGATGAAAATTTATCAGATGTTTTCAT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TTATTCAATTTAGCAATAGGCAACAAATGTTATAT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATGATAGAATGGGTTTAAAGATTAAGTCTATTTTTAGAAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TCGAAGGTGGCGTGATTGAGATAATAAATATAATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGTGCTTGAGGATCAAATCGGTTCTCAGAAATGG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAATTGCAGAAATATTGAAACGATATATGGAAGACG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAAATGTGCTTGATCAAATCAGTTCTCAAAAATGGAGAGA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAAAAAATATCAGAAATATTAAAACAATATATGGAAGACG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAATTTTGGAAGCTCCTATTATAGATGATTTTAATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	CATGAGAAAAGAAATCGAAAAGAAAATTTGGAAATGGCT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGAAGTTAAAGTTTTTGAAAAAGACGCAGAAATCAGTCG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATTATTATGATATTTGTAGAAAAATTTACTGTTCAATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGAAATAACGGACGTGATAAAAATATTCCCCTTCG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TATTTAGATATGCCAATCAGCAACAGAACGATAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATAAATTTAAATAAAGGTGTTTTTTACAGATTATATAG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TCGCCGCCAATGCCACCGTCGTAATGGCGGTGGCC
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAATGGTTGGATGAAAATTTATCGGATAGTTTCATGG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AATTATTGACGGTTTTCAGAAGTTGAAAGAGAAAATTC
GTTTCCATTCCTCATAGGTATGTTCTAAAC

>NZ_CP007223|4|4|909396-911235|CRISPRCasFinder
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATGATATTATGGCAAAATTTATTAATTTAACACCACACAC
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATTGTATATAGCAGCTGATTTAAAATTTACAGA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAAAAGAGAATTTTTAGAAACATTTGAAGATTTTA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GGGAAAATATGGTAATTAAAGTAATAAGAAATAAAAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAAAATTAAGGATCTTCCGAAATGATATTCGGGAGATTCTT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAAAAGAGGAGGGGATGTCATGGAAGTCAAAATATTGA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TAGTAGGATATGGTTTCGTTGGCAAGGAACATCATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TATTAAGTCGATTATATGCGCGACAGGAAGAATTG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TATTAAGTCGATTATATGCGCGACAGGAAGAATTG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGGAAATGGTTGGATGAAAATTTATCAGATGTTTTCAT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TTATTCAATTTAGCAATAGGCAACAAATGTTATAT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATGATAGAATGGGTTTAAAGATTAAGTCTATTTTTAGAAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TCGAAGGTGGCGTGATTGAGATAATAAATATAATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGTGCTTGAGGATCAAATCGGTTCTCAGAAATGG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAATTGCAGAAATATTGAAACGATATATGGAAGACG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAAATGTGCTTGATCAAATCAGTTCTCAAAAATGGAGAGA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAAAAAATATCAGAAATATTAAAACAATATATGGAAGACG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAATTTTGGAAGCTCCTATTATAGATGATTTTAATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	CATGAGAAAAGAAATCGAAAAGAAAATTTGGAAATGGCT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGAAGTTAAAGTTTTTGAAAAAGACGCAGAAATCAGTCG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATTATTATGATATTTGTAGAAAAATTTACTGTTCAATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGAAATAACGGACGTGATAAAAATATTCCCCTTCG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TATTTAGATATGCCAATCAGCAACAGAACGATAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATAAATTTAAATAAAGGTGTTTTTTACAGATTATATAG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TCGCCGCCAATGCCACCGTCGTAATGGCGGTGGCC
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAATGGTTGGATGAAAATTTATCGGATAGTTTCATGG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AATTATTGACGGTTTTCAGAAGTTGAAAGAGAAAATTC
GTTTCCATTCCTCATAGGTATGTTCTAAAC

>NZ_CP007223|4|4|909396-911235|CRT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATGATATTATGGCAAAATTTATTAATTTAACACCACACAC
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATTGTATATAGCAGCTGATTTAAAATTTACAGA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAAAAGAGAATTTTTAGAAACATTTGAAGATTTTA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GGGAAAATATGGTAATTAAAGTAATAAGAAATAAAAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAAAATTAAGGATCTTCCGAAATGATATTCGGGAGATTCTT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAAAAGAGGAGGGGATGTCATGGAAGTCAAAATATTGA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TAGTAGGATATGGTTTCGTTGGCAAGGAACATCATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TATTAAGTCGATTATATGCGCGACAGGAAGAATTG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TATTAAGTCGATTATATGCGCGACAGGAAGAATTG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGGAAATGGTTGGATGAAAATTTATCAGATGTTTTCAT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TTATTCAATTTAGCAATAGGCAACAAATGTTATAT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATGATAGAATGGGTTTAAAGATTAAGTCTATTTTTAGAAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TCGAAGGTGGCGTGATTGAGATAATAAATATAATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGTGCTTGAGGATCAAATCGGTTCTCAGAAATGG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAATTGCAGAAATATTGAAACGATATATGGAAGACG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAAATGTGCTTGATCAAATCAGTTCTCAAAAATGGAGAGA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAAAAAATATCAGAAATATTAAAACAATATATGGAAGACG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AAATTTTGGAAGCTCCTATTATAGATGATTTTAATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	CATGAGAAAAGAAATCGAAAAGAAAATTTGGAAATGGCT
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGAAGTTAAAGTTTTTGAAAAAGACGCAGAAATCAGTCG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATTATTATGATATTTGTAGAAAAATTTACTGTTCAATA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TGAAATAACGGACGTGATAAAAATATTCCCCTTCG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TATTTAGATATGCCAATCAGCAACAGAACGATAA
GTTTCCATTCCTCATAGGTATGTTCTAAAC	ATAAATTTAAATAAAGGTGTTTTTTACAGATTATATAG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	TCGCCGCCAATGCCACCGTCGTAATGGCGGTGGCC
GTTTCCATTCCTCATAGGTATGTTCTAAAC	GAAATGGTTGGATGAAAATTTATCGGATAGTTTCATGG
GTTTCCATTCCTCATAGGTATGTTCTAAAC	AATTATTGACGGTTTTCAGAAGTTGAAAGAGAAAATTC
GTTTCCATTCCTCATAGGTATGTTCTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007223.1\|WP_075665855.1\|921602_922469_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP007223.1\|WP_075666707.1\|899095_900001_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP007223.1\|WP_075665854.1\|920247_921561_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP007223.1\|WP_075665843.1\|905529_906414_-\|glycosidase	unknown	unknown	gnl\|CDD\|350126
NZ_CP007223.1\|WP_075665847.1\|912901_913723_-\|PhzF-family-phenazine-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223461
NZ_CP007223.1\|WP_075665837.1\|897501_899049_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|223962
NZ_CP007223.1\|WP_075665849.1\|914293_914668_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|224745
NZ_CP007223.1\|WP_075665852.1\|917158_918352_+\|DUF438-domain-containing-protein	unknown	unknown	gnl\|CDD\|225301
NZ_CP007223.1\|WP_075665846.1\|912318_912927_+\|pyroglutamyl-peptidase-I	unknown	unknown	gnl\|CDD\|237299
NZ_CP007223.1\|WP_075665848.1\|913727_914192_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239316
NZ_CP007223.1\|WP_075665850.1\|914672_916388_+\|phosphoglucomutase	unknown	unknown	gnl\|CDD\|100092
NZ_CP007223.1\|WP_075665841.1\|903083_904742_+\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP007223.1\|WP_075665842.1\|904665_905481_-\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|378975
NZ_CP007223.1\|WP_075665845.1\|907616_908870_-\|TrpB-like-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|237087
NZ_CP007223.1\|WP_075665851.1\|916429_917098_+\|Crp/Fnr-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223736
NZ_CP007223.1\|WP_075665839.1\|901246_901714_+\|metallophosphoesterase-family-protein	unknown	unknown	gnl\|CDD\|378975
NZ_CP007223.1\|WP_075665840.1\|901716_903084_+\|DUF1945-domain-containing-protein	unknown	unknown	gnl\|CDD\|200455
NZ_CP007223.1\|WP_075665844.1\|906429_907404_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP007223.1\|WP_075665838.1\|900004_901234_+\|HD-domain-containing-protein	cas3HD	cd09641_cas3HD_CAS-I	gnl\|CDD\|225116
NZ_CP007223.1\|WP_075665853.1\|918364_920023_+\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391

Protein	Function_ID	Function_description	E-value
NZ_CP007223.1\|WP_075665855.1\|921602_922469_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	6.23505e-68
NZ_CP007223.1\|WP_075666707.1\|899095_900001_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	2.01229e-46
NZ_CP007223.1\|WP_075665854.1\|920247_921561_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.96613e-133
NZ_CP007223.1\|WP_075665843.1\|905529_906414_-\|glycosidase	gnl\|CDD\|350126	cd18614, GH130, Glycosyl hydrolase family 130; uncharacterized. This subfamily contains glycosyl hydrolase family 130 (GH130) proteins, as classified by the carbohydrate-active enzymes database (CAZY), most of which are as yet uncharacterized. GH130 enzymes are phosphorylases and hydrolases for beta-mannosides, and include beta-1,4-mannosylglucose phosphorylase (EC 2.4.1.281), beta-1,4-mannooligosaccharide phosphorylase (EC 2.4.1.319), beta-1,4-mannosyl-N-acetyl-glucosamine phosphorylase (EC 2.4.1.320), beta-1,2-mannobiose phosphorylase (EC 2.4.1.-), beta-1,2-oligomannan phosphorylase (EC 2.4.1.-) and beta-1,2-mannosidase (EC 3.2.1.-). They possess 5-bladed beta-propeller domains similar to families 32, 43, 62, 68, 117 (GH32, GH43, GH62, GH68, GH117). GH130 enzymes are involved in the bacterial utilization of mannans or N-linked glycans. Beta-1,4-mannosylglucose phosphorylase is involved in degradation of beta-1,4-D-mannosyl-N-acetyl-D-glucosamine linkages in the core of N-glycans; it produces alpha-mannose 1-phosphate and glucose from 4-O-beta-D-mannosyl-D-glucose and inorganic phosphate, using a critical catalytic Asp as a proton donor.	3.11264e-142
NZ_CP007223.1\|WP_075665847.1\|912901_913723_-\|PhzF-family-phenazine-biosynthesis-protein	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	1.44209e-79
NZ_CP007223.1\|WP_075665837.1\|897501_899049_+\|radical-SAM-protein	gnl\|CDD\|223962	COG1031, COG1031, Uncharacterized Fe-S oxidoreductase [Energy production and conversion].	0
NZ_CP007223.1\|WP_075665849.1\|914293_914668_+\|CoA-binding-protein	gnl\|CDD\|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.96377e-38
NZ_CP007223.1\|WP_075665852.1\|917158_918352_+\|DUF438-domain-containing-protein	gnl\|CDD\|225301	COG2461, COG2461, Uncharacterized conserved protein [Function unknown].	2.14969e-97
NZ_CP007223.1\|WP_075665846.1\|912318_912927_+\|pyroglutamyl-peptidase-I	gnl\|CDD\|237299	PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional.	2.39395e-112
NZ_CP007223.1\|WP_075665848.1\|913727_914192_-\|peroxiredoxin	gnl\|CDD\|239316	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.	1.67461e-58
NZ_CP007223.1\|WP_075665850.1\|914672_916388_+\|phosphoglucomutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP007223.1\|WP_075665841.1\|903083_904742_+\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	8.29035e-119
NZ_CP007223.1\|WP_075665842.1\|904665_905481_-\|metallophosphoesterase-family-protein	gnl\|CDD\|378975	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain. Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	1.57364e-25
NZ_CP007223.1\|WP_075665845.1\|907616_908870_-\|TrpB-like-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|237087	PRK12391, PRK12391, TrpB-like pyridoxal phosphate-dependent enzyme.	0
NZ_CP007223.1\|WP_075665851.1\|916429_917098_+\|Crp/Fnr-family-transcriptional-regulator	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	5.71145e-21
NZ_CP007223.1\|WP_075665839.1\|901246_901714_+\|metallophosphoesterase-family-protein	gnl\|CDD\|378975	pfam12850, Metallophos_2, Calcineurin-like phosphoesterase superfamily domain. Members of this family are part of the Calcineurin-like phosphoesterase superfamily.	1.63958e-29
NZ_CP007223.1\|WP_075665840.1\|901716_903084_+\|DUF1945-domain-containing-protein	gnl\|CDD\|200455	cd11316, AmyAc_bac2_AmyA, Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase). AmyA (EC 3.2.1.1) catalyzes the hydrolysis of alpha-(1,4) glycosidic linkages of glycogen, starch, related polysaccharides, and some oligosaccharides. This group includes Chloroflexi, Dictyoglomi, and Fusobacteria. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	3.17388e-142
NZ_CP007223.1\|WP_075665844.1\|906429_907404_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.18105e-82
NZ_CP007223.1\|WP_075665838.1\|900004_901234_+\|HD-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	8.57539e-43
NZ_CP007223.1\|WP_075665853.1\|918364_920023_+\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0

>NZ_CP007223.1|WP_075665845.1|907616_908870_-|TrpB-like-pyridoxal-phosphate-dependent-enzyme
MREYVHLQKVPKSWYNVLADLPFKLDPPLDPETNKPMTPEKLLKTFPQPLLEQEVSDKRFIEIPEEVLNEYYVFRPTPLIRATFLERYLETPAKIYYKYEGASPTGSHKTNTALAQAYYNKISGTKTLYTETGAGQWGSALSYAGLKFGLKIKVFMVRVSYMQKPARKQLMNLFNGEVVPSPSNLTASGKKYGEDHPGTLGIAISEAMEKVLEQKNSKYALGSVLNHVLLHQTIIGLEIKKQLEKLGLIPNVLIGCHGGGSNFGGTILPFIPEKLSGKNIKFLACEPKSCPTLTKGEYKYDFGDSVGFTPLLKMFTLGKDFVPPKIHAGGLRYHGAAPIVSALLKNKLIEAEAFDQNETFQAAKIFAKVEGIIPAPESAHAIAGAIKEALKAKEEKIEKTIVFTLSGHGLFDLAAYV
>NZ_CP007223.1|WP_075665844.1|906429_907404_-|LacI-family-DNA-binding-transcriptional-regulator
MVTIDDVARKAGVSIATVSRVLNNLENVSEKTKMKVLKAIEELNYKPKILASALARHKKKFKVGICESDRLKKMESENTSPEFYSVILTFLEKIGGEYGIEFCKTNLLTPIECDGYILVGGDTTKEVIEQYKVTKKPFLLLDHYIPGEKINCIVTNGYDGAYYATNYLIKKGFRKIFHIHGPLNSYGFKGRFEGYTTAMHQANLLPKYYEYDDVKDNMEDVIEFMLKKDGIPEAIFASNDITAMRVIRELKKRNFKIPEDVSIIGFDDILSAKEFEPPLTTLKVFKDEMGSLTAKRMYELLIGHDTHPVMISLFTKFIKRKSSI
>NZ_CP007223.1|WP_075665843.1|905529_906414_-|glycosidase
MELKLERHFKNPLFGPNPNHIWESRFVFNPAVVFDGELFHMLYRAQGEDMVSRLGYAVSTDGIHWNRLEKYVFGPSTQEELYGVEDPRITFLEGYYYINYTAYSPTGIKVAMARTKNFITYERFGTILPESPNKDATLFPEKINGKYVLIHRIEPDIYLAFSDDLIHWENYVKIASPRKNYWDNLKIGAGAPPIKTKYGWLLLYHGVQKAPRNIYRLGFMLLDLNDPTKIIKRSQEPILEPKEEWEIFGGVPNVVFSDAMVRYKDKYYIYYGGADNYIALATIDTEKVEKWIKE
>NZ_CP007223.1|WP_075665842.1|904665_905481_-|metallophosphoesterase-family-protein
MKKIAFISDIHSNLEALESVLFDIENEKVDQIYCLGDLVGYGPNPNKVIELIKEKGIISVMGNYDDAVGNEKNSCGCSYNPGRETEIGDISLSWTIRNTSDKNKEFLKNLPQKLSLEVENVKILLVHGSPLNYLLEYVKPDISPERLKLITQSTNEDIIITGHTHITMAKYLCGKIILNPGSVGRTKDGKPGATYLILEIENGVVSYKFKFVEYNIKTVVEKIVKKGLPVELGVVLALGKTFDMGEAKSSQNNYQVREKLILKKEVFHGDK
>NZ_CP007223.1|WP_075665841.1|903083_904742_+|DNA-mismatch-repair-endonuclease-MutL
MAKIKKLDKNVISKIAAGEVVAGPFSVVKELVENALDARAKKIEVEIQNGGKSYIKVKDNGEGMSKDDLLLSVEEHTTSKIKDFEDIYTLYSFGFRGEALSSISKVSRVVITSNNGEESHRLEVIGGKIKKIEEFPTIERGTTVEVLDLFFNVPARRKFLKSAAVEKRRVIEFVEKFLLSNPEVSFTLKSDGDVLYNAESSSLEERFKLIFPEVREFTNINGKFVNGIISSPNYYRKNRTGQIFFVQKRYVVDKMLYHVFENGYGESLVNHPYGVLFIDLPPKYVDVNVHPQKLEVKFSDPNAIYSDIIRTVRNALKKFISKKIFVSDKKFEVKERHLNYINRQKVENEIPKNQIFQTLFDIERRNLEVKRDVIILRKRYVLFESEDGIYIMDFHAAHERILYEDILKKLNEKVDVLDLMIPIEVKFGKSFLSIASERKNDFEKFGFDIKIEDDSIKILSVPSFIKPSNVEEVLREILDEFRLPGDSPKNMKHIIADKACKSAVKTGYDITESEAKKLVEEVLKRGLTTCPHGRPLFLKLTFHELDSYFERI
>NZ_CP007223.1|WP_075665840.1|901716_903084_+|DUF1945-domain-containing-protein
MIGYEIYIRSFYDYNSDGIGDFKGLSQKVSYLKDLGVDLVWIMPHFRAPSYHGYDIINFFDTNISYGTLEEFKKMVDVLHENGIRVVIDLPLNHVSSRHPWFKAALEDDPKYKNYFLWADEDVDLSEKRPWDNEVIWHPYKGKWYYGVFGGASPDLNYENEEVVEEALKIVEFWLKVGVDGFRFDAAKHIYDYDTVNKRFHYNHEKNIAFWKKIMDKARGIKSDVFAVTEVWDSPEIVMEYAKTIGCSFNFYFTEALKESMTNGNTHKIWDCFSRTLMDNRGLYIPSNFSGNHDITRLASVVKSEEQRKVFFAMLLTTPGIPFIYYGDELGMKGVFDPYFTENVIEPMPWYASLSGEGQTLWKSIGFNYAFTGVSVEEQLKREDSLLNTVKQWIRFRKENTWMVNSWIVDLKTSEFVVAYTITNGEKSFRIYHNIAGHEEHFEGIHLKPFESKVL
>NZ_CP007223.1|WP_075665839.1|901246_901714_+|metallophosphoesterase-family-protein
MKFLVISDLHIPTRNREIHPKIVELSKELDGVFALGDFVDLNTVLYLQSLNRNFYAVFGNMDDYDVKDYLPAQRVVKIGRYVIGLTHGSGSHIRIPERIVNWFDDDVDVILFGHSHVPEDRIFRGKRFINPGTAMETYGIMEIGDTLKFEVFKED
>NZ_CP007223.1|WP_075665838.1|900004_901234_+|HD-domain-containing-protein
MKILFNTINLVPNFGVHSLQVAFLSSEISKLLSLDYKKAFITGYIHDIGVLIPHEGFVLDDINSSYLLLHDVSSLNELTRMHTIIGSFIISQINSLKEYSDIILKHHAVPKFLDEKFKDDIYANVISISEEISKYHFINDDVDYDDLFFPILSIKNRFFKEVFDAAVECIKKEYVMWILDDIKRNILKEKLIQEFIDIRKDQDFLVELGILISFIVDVKSKFTKDHSWRVATVAREMASVASLDKDSMFLAGLYHDIGKITTPISILEKKGKLTESEIKIMKKHVYYSMIILHDYLNESWYLPAVRHQERCDGTGYPLRLISDNMEFEDKILQVADYFSALLEDRPYREGFSAEKAFEITYETAKKGTLSVEAVDVLNEVLKKDMDFKNIPYISDVQKNIDQFINGITI
>NZ_CP007223.1|WP_075666707.1|899095_900001_+|GGDEF-domain-containing-protein
MEVLKDESVDKFFHKLADKSLPILKFDAWSVLEVEDKERVKFVAVSDFYQRFDVEKIEKKLSFQDFALYNVVLNTKRWKYIKDVSKTRAWVPNNRISSWIGIPLLFDSKVYGVLSLDYFKIKRLGLKEKLFLDNFQRNFSKIASDFRQLKELFYQKYIDQLTSLKNRHFIEEFFESNKERVGLIFCDLNKFKSINDTYGHRFGDEVIKVVAKRLKNVLKSTDQVVRYGGDEFIIITKNVDKIHVIINRIKNIIKKYDIIIDGKKVNLGISCGYAIFPDDGTDLWEILHIADLRMYEEKKKE
>NZ_CP007223.1|WP_075665837.1|897501_899049_+|radical-SAM-protein
MKSAVLIDGYVDEPAVLGVPPYISTYARYIAGTLLLKGFEVTYTTIDQIREKDNWQIFNDYDVMVILSSVTVPGKYIGGTPITIDEIEKLFELNKKPFRILTGAIVNFFKSTKADDVAEDFLKYAFENVSYEIIRKVSIEGAQIVKQHPRYPDVICEIEVSLGCERRTYCTFCSEPILHPIFSSRPVKDIVDEVEALYKCGVRAFRLGRSANILAYGFDKNSSKINILLINELYNGIRDVAPELEVLHTDNANPGFIAKYYPESAKAIEVIVKYNTPGDIFSFGVESFDEDVRKKNNIQGSVDDIDFAIRLVNEVGGKRVEGVPKLLPGLNFIFGLYGETRKSYDILYKKLKEYLNDNVLIRRINLRQLYLVPNTPIWYLSKRKHLKVNKKLFNHYKYLIRREIDSPMLRKVFPKGTIIRNVISEFKEGNITFARPLGTYPILIGVIGIFEGKSDVYVVDHGRRSITAIEMERKVGDYSINELTKIPGIGKSTAQMLKEKFFNQPLWKVLEGQVD
>NZ_CP007223.1|WP_075665846.1|912318_912927_+|pyroglutamyl-peptidase-I
MKVLITGFEPFNKEKINPSYEALKKLPEEIEGIKVVKAQVPTVFRKSIEEIERLIIREKPDIVICVGQAGGRSKITIERVAINIDDANIPDNMGNKPEDEKIFEDGENAYFSNLPIKHMIESIKKCNIPADISNSAGTYVCNHILYGLLYLINKKYPHIKGGFIHVPYAHEQVIEKKNVPSMSIDDIAKALYCAIKSLKVVL
>NZ_CP007223.1|WP_075665847.1|912901_913723_-|PhzF-family-phenazine-biosynthesis-protein
MNFFIVDAFTNEPFKGNPAGVVLLDKEIPKKLKQNIAKEIGFSETSFVLKKGKEFFIEYFTPVSEIDICGHATIATFYVLHHLKLLESKKVLLHTKAGKLNIYISEEKIFMEQAQPKLGETIEKEKISKVLNISVDDFDTLPVQKAFTGLWDLIVPVKSKKILLNINPDLEYMKRFNDVASFHVFTLDESNGLCNTRNFAPLYGINEEAATGTANGALFYYLYKHNIVKKDKVYKIIQGESLNRKSEIFVTFDGKIKVGGTAKIIFKGQLLDF
>NZ_CP007223.1|WP_075665848.1|913727_914192_-|peroxiredoxin
MLKKGDMYVDFELVDTNLNKVKLSNEIGEKIVLVFYPGAFTSVCEKELCSFRDIIAKFNNLNAKVFGISVDTPFSNKAFAEKNRLNFTLLSDFGGKVSEKYGGVHKNFIDIENYTVSKRAVYIIDESGKIIYDWVSDDPGKEPPYEEIEKILTR
>NZ_CP007223.1|WP_075665849.1|914293_914668_+|CoA-binding-protein
MVDLNKVKKIALVGATTNKEKFGYIILKDLISKGFEVIPVTPKYEEIEGIKVAKTIKELEEDVDLIVFVVPPKVGAVVTREVLERGFKNLWYQPGAYSSEIEEVLKQSGVEVVHERCIMVETRR
>NZ_CP007223.1|WP_075665850.1|914672_916388_+|phosphoglucomutase
MHYMEEYKRWLESPYIDEETKKELYEIKDNEEEIKERFFKDLEFGTAGLRGKIGAGTNRMNKYVIARATQGLADFINSKGEDRAKRGVVIAYDVRHYSKEFAREAASVLAGNGIKVYIFDDIRPTPELSFAVRYLNATAGIVITASHNPPEYNGYKVYWDKGSQILDDVAIPVQNNIKALKDFGMIKRIPFEEGLNKLIHIIGKEVDEEYYKKVLSLALNEDIDKGIKIVYTPLNGTGNIPVRHVLKERGFKNVFVVKEQELPDPDFTTVGYPNPEDIKAFELALKLAREKDADLIIATDPDCDRLAVMVKHNDQYVALNGNQTGAILIQYLLSQRKEKQLLSDKSVIIKSIVTGNLGKLIAKEYNVETFETLTGFKNICGLENELEKEGYQFEFGYEESIGFVTGNFVRDKDGVISAMMLSEAAGYYKKFGRTLVDVLNELYEKYGYYLENNFSLIYEGIEGMEKISKIMEFYRKSFPKEIGNLKVKSYIDYLDGNIYDIDGNVIGKVERIPSSNVLRFFFDDGSWYAIRPSGTEPKLKVYIYSFARTRDESEKKLELIESEFRKIIEKI
>NZ_CP007223.1|WP_075665851.1|916429_917098_+|Crp/Fnr-family-transcriptional-regulator
MHPLIETFSKIEVFKKLKISQIERLVKNREIIFRRYERGELIKGRGEKINEVMVLMSGKVRGEMNDFNGKNLVVEEIKAPNFLAVNISFSREAILPVDIISEERCEVAYLKKEKIFELASENIDFLKALVEFLGSKFYFISQKLWFITLNSLKEKILIYLASKYSGGEIVVLDKSIEQLSQLFGSTRPALSRAFSSLESEGIIRKEGNKIYILDKDVIDFYV
>NZ_CP007223.1|WP_075665852.1|917158_918352_+|DUF438-domain-containing-protein
MSELFNKKEYLKNLILRVSQRDDEKLKRELKETIKELSAEEIAKVEQELMEEEGLSIEKIQSVCDVHLELFKEYIDSEKIDVEEWHPIYILMKEHEYIIKSLEGLKELSDKLLKKSDVPSALPILLNLQRYIDDLNEAEKYFQKEENVLFPYIEKHGITKPPAVMWKEHDQVRLLRKELIGIKEKRDLELAKNKLYEISMGLLELFLNHVHKEHSVLFPTALKLISDEEWLDIREQFDEIGYIGITPVSVEKRVKIEERVYDENIKLPSGEFTLEELKYVLNTLPVDITFVDKNDEVKYFSETKDRIFVRSRAIIGRKVQNCHPEKSIDIVNKILEDFKSGKRDHADFWLKLGERYVYIRYFAVRNEKGEYLGTLEVTQDIKPIQEISGEKRIYDDK
>NZ_CP007223.1|WP_075665853.1|918364_920023_+|hydroxylamine-reductase
MFCYQCSEASKGVGCTTVGVCGKTPEVAHLQDLIIWLVKGISYWSLKAKEYGVKDEEVNLFVAEMLFATITNVNFSVERMVEFIERAFELRDRIKHKFLDVYAQKEGKPFDEKVPEAAEWYKKGGADLYELKGMEVGVLSDKDEDIRSLKQLLIYGLKGIAAYTDHAYILKHTNDDILYFIQRGLVETLRDDITADELVSLVLEAGKFAVDAMALLDKANTTEFGNPEITEVYTGTYNTPAILVSGHDLLDLEELLKQTEGTGIMVYTHGEMLPAHAYPKLKKYKHLAGNFGSAWWKQTQEFEEFGGAILMTTNCLVPPKGSYKDRVFTTGLVGFDKLTHIPNRTDGKPKDFSPVIKKALELGPIPERKGKKLVIGFAHNQVLKLADKVIDAVKSGAIKKFVVMGGCDGRHPGREYYTEFAKKLPKDTVILTAGCAKYRYNHLDLGDIDGIPRILDAGQCNDSYSLAVIALKLKEALGLNDINELPIAYNIAWYEQKAVAVLLALLYLGIKGIRLGPVLPAFVSENVLKVLVEKFNIAPITTVEEDLKTLLA
>NZ_CP007223.1|WP_075665854.1|920247_921561_+|ABC-transporter-substrate-binding-protein
MKKVLIFALVILSVLSFSKVTIEFWHAMSGWRIELLENMAKEFMATHPNIEIKVQYTGSYRDTFNKTIAAVKAGNPPHVVQIYDIGTRAMIDGNITVPIGNLIEEDPTIDLGAFLPQVLNYYTVDGKLYSMPFNSSNAILFYNKTAFKEAGLDPKRPPRTFDELIEYSRKLVKKDEKGNIIRYGLTWPTHSWFFEQLMAVQDAPLVNNDNGRGSKRPDKAVFNSEAGKRIFELLAQMTKEGLLINTKREDWSGARQIFLSGKAAMLLYSTSDVKFITETAKKNGWEVGTAFLPKPSLSIQGGVVIGGGSLWILKNHPKKEIDAAWEFVKWMTEPKQQIRWHNETGYFPVRKDAVEQLLMEGFYAEKPNYLTAIFQLLLSKQTPNTNGAIIGVFPETREIIETAYEKVINGQMTVEQALNWAAGEVTKALKKYNRLYK
>NZ_CP007223.1|WP_075665855.1|921602_922469_+|sugar-ABC-transporter-permease
MRKLTPYFLLIPTFVIIILFIYTPAFNSFKMSFFQETYFGDKKVFVGFDNYIDLFSDNEYYDVLKNTFIYSFVSVGLTIFLSFLISQLLILDLPGTKVVRTLIFSPYAVSPAISATLWAMLFTPTAGLFSYLFQITFNLDVKWLTTKPYAMIAIIAATVWKMLPFDLIFYIAALQNIPDSILESSLMDGANGWIRMWRIKFPLVTPITFYLFIMNFTTTMFSSFGIIDIMTRGGPLNSTTNMIYRLYLDGFAFQDNGLASAQSVVMFGIMSIITYLYFKFVEGKVHYQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007223_4	4.2\|909496\|33\|NZ_CP007223\|PILER-CR,CRISPRCasFinder,CRT	909496-909528	33	MF417969	Uncultured Caudovirales phage clone 2AX_1, partial genome	10754-10786	7	0.788
NZ_CP007223_2	2.60\|310738\|36\|NZ_CP007223\|CRISPRCasFinder,CRT	310738-310773	36	MN694280	Marine virus AFVG_250M397, complete genome	35080-35115	8	0.778
NZ_CP007223_2	2.60\|310738\|36\|NZ_CP007223\|CRISPRCasFinder,CRT	310738-310773	36	MN694299	Marine virus AFVG_250M399, complete genome	15525-15560	8	0.778
NZ_CP007223_2	2.60\|310738\|36\|NZ_CP007223\|CRISPRCasFinder,CRT	310738-310773	36	MN694718	Marine virus AFVG_250M398, complete genome	15521-15556	8	0.778
NZ_CP007223_2	2.111\|310786\|35\|NZ_CP007223\|PILER-CR	310786-310820	35	MN694280	Marine virus AFVG_250M397, complete genome	35081-35115	8	0.771
NZ_CP007223_2	2.111\|310786\|35\|NZ_CP007223\|PILER-CR	310786-310820	35	MN694299	Marine virus AFVG_250M399, complete genome	15525-15559	8	0.771
NZ_CP007223_2	2.111\|310786\|35\|NZ_CP007223\|PILER-CR	310786-310820	35	MN694718	Marine virus AFVG_250M398, complete genome	15521-15555	8	0.771
NZ_CP007223_4	4.6\|909764\|38\|NZ_CP007223\|PILER-CR,CRISPRCasFinder,CRT	909764-909801	38	NZ_CP030933	Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence	619596-619633	8	0.789
NZ_CP007223_2	2.13\|307389\|34\|NZ_CP007223\|CRISPRCasFinder,CRT	307389-307422	34	NZ_CP017081	Bacillus muralis strain G25-68 plasmid pG25-68, complete sequence	14477-14510	9	0.735
NZ_CP007223_2	2.22\|308027\|36\|NZ_CP007223\|CRISPRCasFinder,CRT	308027-308062	36	NC_012782	[Eubacterium] eligens ATCC 27750 plasmid unnamed, complete sequence	35174-35209	9	0.75
NZ_CP007223_2	2.32\|308745\|34\|NZ_CP007223\|CRISPRCasFinder,CRT	308745-308778	34	NC_023007	Bacillus phage vB_BanS-Tsamsa, complete genome	116518-116551	9	0.735
NZ_CP007223_2	2.32\|308745\|34\|NZ_CP007223\|CRISPRCasFinder,CRT	308745-308778	34	MT254578	Bacillus phage Izhevsk, complete genome	114517-114550	9	0.735
NZ_CP007223_2	2.33\|308814\|34\|NZ_CP007223\|CRISPRCasFinder,CRT	308814-308847	34	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	96124-96157	9	0.735
NZ_CP007223_2	2.33\|308814\|34\|NZ_CP007223\|CRISPRCasFinder,CRT	308814-308847	34	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	105908-105941	9	0.735
NZ_CP007223_2	2.60\|310738\|36\|NZ_CP007223\|CRISPRCasFinder,CRT	310738-310773	36	MN693893	Marine virus AFVG_250M400, complete genome	34929-34964	9	0.75
NZ_CP007223_2	2.64\|307393\|34\|NZ_CP007223\|PILER-CR	307393-307426	34	NZ_CP017081	Bacillus muralis strain G25-68 plasmid pG25-68, complete sequence	14477-14510	9	0.735
NZ_CP007223_2	2.73\|308040\|36\|NZ_CP007223\|PILER-CR	308040-308075	36	NC_012782	[Eubacterium] eligens ATCC 27750 plasmid unnamed, complete sequence	35174-35209	9	0.75
NZ_CP007223_2	2.83\|308768\|34\|NZ_CP007223\|PILER-CR	308768-308801	34	NC_023007	Bacillus phage vB_BanS-Tsamsa, complete genome	116518-116551	9	0.735
NZ_CP007223_2	2.83\|308768\|34\|NZ_CP007223\|PILER-CR	308768-308801	34	MT254578	Bacillus phage Izhevsk, complete genome	114517-114550	9	0.735
NZ_CP007223_2	2.84\|308838\|34\|NZ_CP007223\|PILER-CR	308838-308871	34	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	96124-96157	9	0.735
NZ_CP007223_2	2.84\|308838\|34\|NZ_CP007223\|PILER-CR	308838-308871	34	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	105908-105941	9	0.735
NZ_CP007223_2	2.111\|310786\|35\|NZ_CP007223\|PILER-CR	310786-310820	35	MN693893	Marine virus AFVG_250M400, complete genome	34930-34964	9	0.743
NZ_CP007223_4	4.25\|911035\|35\|NZ_CP007223\|PILER-CR,CRISPRCasFinder,CRT	911035-911069	35	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	429249-429283	9	0.743
NZ_CP007223_2	2.6\|306891\|36\|NZ_CP007223\|PILER-CR,CRISPRCasFinder,CRT	306891-306926	36	NZ_CP029998	Salmonella enterica subsp. salamae strain SA20053897 plasmid pSA20053897.3, complete sequence	49439-49474	10	0.722
NZ_CP007223_2	2.6\|306891\|36\|NZ_CP007223\|PILER-CR,CRISPRCasFinder,CRT	306891-306926	36	NZ_CP022035	Salmonella enterica subsp. enterica serovar Onderstepoort str. SA20060086 plasmid punamed2, complete sequence	133045-133080	10	0.722
NZ_CP007223_2	2.6\|306891\|36\|NZ_CP007223\|PILER-CR,CRISPRCasFinder,CRT	306891-306926	36	NC_019342	Salmonella sp. 14 plasmid p14-120, complete sequence	46470-46505	10	0.722
NZ_CP007223_2	2.18\|307741\|35\|NZ_CP007223\|CRISPRCasFinder,CRT	307741-307775	35	MG592441	Vibrio phage 1.063.O._10N.261.45.C7, partial genome	5859-5893	10	0.714
NZ_CP007223_2	2.33\|308814\|34\|NZ_CP007223\|CRISPRCasFinder,CRT	308814-308847	34	NZ_CP038614	Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence	78966-78999	10	0.706
NZ_CP007223_2	2.33\|308814\|34\|NZ_CP007223\|CRISPRCasFinder,CRT	308814-308847	34	MH595538	Vibrio phage BONAISHI, complete genome	25102-25135	10	0.706
NZ_CP007223_2	2.69\|307750\|35\|NZ_CP007223\|PILER-CR	307750-307784	35	MG592441	Vibrio phage 1.063.O._10N.261.45.C7, partial genome	5859-5893	10	0.714
NZ_CP007223_2	2.84\|308838\|34\|NZ_CP007223\|PILER-CR	308838-308871	34	NZ_CP038614	Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence	78966-78999	10	0.706
NZ_CP007223_2	2.84\|308838\|34\|NZ_CP007223\|PILER-CR	308838-308871	34	MH595538	Vibrio phage BONAISHI, complete genome	25102-25135	10	0.706
NZ_CP007223_4	4.2\|909496\|33\|NZ_CP007223\|PILER-CR,CRISPRCasFinder,CRT	909496-909528	33	NZ_CP045307	Legionella longbeachae strain B41211CHC plasmid pB41211CHC_76k, complete sequence	979-1011	10	0.697
NZ_CP007223_4	4.2\|909496\|33\|NZ_CP007223\|PILER-CR,CRISPRCasFinder,CRT	909496-909528	33	NC_014544	Legionella longbeachae NSW150 plasmid pLLO, complete sequence	1306-1338	10	0.697
NZ_CP007223_4	4.3\|909559\|36\|NZ_CP007223\|PILER-CR,CRISPRCasFinder,CRT	909559-909594	36	MN693380	Marine virus AFVG_25M72, complete genome	34013-34048	10	0.722
NZ_CP007223_2	2.4\|306747\|35\|NZ_CP007223\|PILER-CR,CRISPRCasFinder,CRT	306747-306781	35	MN693352	Marine virus AFVG_25M558, complete genome	20155-20189	11	0.686
NZ_CP007223_2	2.6\|306891\|36\|NZ_CP007223\|PILER-CR,CRISPRCasFinder,CRT	306891-306926	36	NZ_CP053469	Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence	32932-32967	11	0.694

1. spacer 4.2|909496|33|NZ_CP007223|PILER-CR,CRISPRCasFinder,CRT matches to MF417969 (Uncultured Caudovirales phage clone 2AX_1, partial genome) position: , mismatch: 7, identity: 0.788

attgtatatagcagctgatttaaaatttacaga	CRISPR spacer
attgtatagagcagatgatttaaaagattctaa	Protospacer
******** ***** **********  * * .*

2. spacer 2.60|310738|36|NZ_CP007223|CRISPRCasFinder,CRT matches to MN694280 (Marine virus AFVG_250M397, complete genome) position: , mismatch: 8, identity: 0.778

catagaaaactcaggagtagcattcccagttatcgt	CRISPR spacer
catataaaactcaggagaagcattccccttcacctc	Protospacer
**** ************ *********  *.*.* .

3. spacer 2.60|310738|36|NZ_CP007223|CRISPRCasFinder,CRT matches to MN694299 (Marine virus AFVG_250M399, complete genome) position: , mismatch: 8, identity: 0.778

catagaaaactcaggagtagcattcccagttatcgt	CRISPR spacer
catataaaactcaggagaagcattccccttcacctc	Protospacer
**** ************ *********  *.*.* .

4. spacer 2.60|310738|36|NZ_CP007223|CRISPRCasFinder,CRT matches to MN694718 (Marine virus AFVG_250M398, complete genome) position: , mismatch: 8, identity: 0.778

catagaaaactcaggagtagcattcccagttatcgt	CRISPR spacer
catataaaactcaggagaagcattccccttcacctc	Protospacer
**** ************ *********  *.*.* .

5. spacer 2.111|310786|35|NZ_CP007223|PILER-CR matches to MN694280 (Marine virus AFVG_250M397, complete genome) position: , mismatch: 8, identity: 0.771

atagaaaactcaggagtagcattcccagttatcgt	CRISPR spacer
atataaaactcaggagaagcattccccttcacctc	Protospacer
*** ************ *********  *.*.* .

6. spacer 2.111|310786|35|NZ_CP007223|PILER-CR matches to MN694299 (Marine virus AFVG_250M399, complete genome) position: , mismatch: 8, identity: 0.771

atagaaaactcaggagtagcattcccagttatcgt	CRISPR spacer
atataaaactcaggagaagcattccccttcacctc	Protospacer
*** ************ *********  *.*.* .

7. spacer 2.111|310786|35|NZ_CP007223|PILER-CR matches to MN694718 (Marine virus AFVG_250M398, complete genome) position: , mismatch: 8, identity: 0.771

atagaaaactcaggagtagcattcccagttatcgt	CRISPR spacer
atataaaactcaggagaagcattccccttcacctc	Protospacer
*** ************ *********  *.*.* .

8. spacer 4.6|909764|38|NZ_CP007223|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030933 (Enterococcus gilvus strain CR1 plasmid pCR1A, complete sequence) position: , mismatch: 8, identity: 0.789

aaaaagaggaggggatgtcatggaagtcaaaatattga	CRISPR spacer
taaaagaggaggggatgtcatgaaagccaaagatttat	Protospacer
 *********************.***.****.  **.

9. spacer 2.13|307389|34|NZ_CP007223|CRISPRCasFinder,CRT matches to NZ_CP017081 (Bacillus muralis strain G25-68 plasmid pG25-68, complete sequence) position: , mismatch: 9, identity: 0.735

ttcttgtgccaattctttagtagtcatcttatca	CRISPR spacer
ttctagtgccaattccttagtagttttgctttac	Protospacer
**** **********.********. * .* *

10. spacer 2.22|308027|36|NZ_CP007223|CRISPRCasFinder,CRT matches to NC_012782 ([Eubacterium] eligens ATCC 27750 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

actctatatctcctaatgctccgtttctgttttttc	CRISPR spacer
actctatatctcctactgctccgtttagaatatcct	Protospacer
*************** **********  . * *...

11. spacer 2.32|308745|34|NZ_CP007223|CRISPRCasFinder,CRT matches to NC_023007 (Bacillus phage vB_BanS-Tsamsa, complete genome) position: , mismatch: 9, identity: 0.735

-----ttggaacacctgttgtatacttcggaacatatga	CRISPR spacer
cgttattcg-----ctgttgtatagttaggaacatatgt	Protospacer
     ** *     ********** ** **********

12. spacer 2.32|308745|34|NZ_CP007223|CRISPRCasFinder,CRT matches to MT254578 (Bacillus phage Izhevsk, complete genome) position: , mismatch: 9, identity: 0.735

-----ttggaacacctgttgtatacttcggaacatatga	CRISPR spacer
cgttattcg-----ctgttgtatagttaggaacatatgt	Protospacer
     ** *     ********** ** **********

13. spacer 2.33|308814|34|NZ_CP007223|CRISPRCasFinder,CRT matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

acattttg------accattaacgaagtcagacaagaaat	CRISPR spacer
------tgcgtgacacgattgacgaagtcagacaagaaac	Protospacer
      **      ** ***.******************.

14. spacer 2.33|308814|34|NZ_CP007223|CRISPRCasFinder,CRT matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.735

acattttg------accattaacgaagtcagacaagaaat	CRISPR spacer
------tgcgtgacacgattgacgaagtcagacaagaaac	Protospacer
      **      ** ***.******************.

15. spacer 2.60|310738|36|NZ_CP007223|CRISPRCasFinder,CRT matches to MN693893 (Marine virus AFVG_250M400, complete genome) position: , mismatch: 9, identity: 0.75

catagaaaactcaggagtagcattcccagttatcgt	CRISPR spacer
catataaaactcaggagaagcattccccttcgactc	Protospacer
**** ************ *********  *.. * .

16. spacer 2.64|307393|34|NZ_CP007223|PILER-CR matches to NZ_CP017081 (Bacillus muralis strain G25-68 plasmid pG25-68, complete sequence) position: , mismatch: 9, identity: 0.735

ttcttgtgccaattctttagtagtcatcttatca	CRISPR spacer
ttctagtgccaattccttagtagttttgctttac	Protospacer
**** **********.********. * .* *

17. spacer 2.73|308040|36|NZ_CP007223|PILER-CR matches to NC_012782 ([Eubacterium] eligens ATCC 27750 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.75

actctatatctcctaatgctccgtttctgttttttc	CRISPR spacer
actctatatctcctactgctccgtttagaatatcct	Protospacer
*************** **********  . * *...

18. spacer 2.83|308768|34|NZ_CP007223|PILER-CR matches to NC_023007 (Bacillus phage vB_BanS-Tsamsa, complete genome) position: , mismatch: 9, identity: 0.735

-----ttggaacacctgttgtatacttcggaacatatga	CRISPR spacer
cgttattcg-----ctgttgtatagttaggaacatatgt	Protospacer
     ** *     ********** ** **********

19. spacer 2.83|308768|34|NZ_CP007223|PILER-CR matches to MT254578 (Bacillus phage Izhevsk, complete genome) position: , mismatch: 9, identity: 0.735

-----ttggaacacctgttgtatacttcggaacatatga	CRISPR spacer
cgttattcg-----ctgttgtatagttaggaacatatgt	Protospacer
     ** *     ********** ** **********

20. spacer 2.84|308838|34|NZ_CP007223|PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

acattttg------accattaacgaagtcagacaagaaat	CRISPR spacer
------tgcgtgacacgattgacgaagtcagacaagaaac	Protospacer
      **      ** ***.******************.

21. spacer 2.84|308838|34|NZ_CP007223|PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.735

acattttg------accattaacgaagtcagacaagaaat	CRISPR spacer
------tgcgtgacacgattgacgaagtcagacaagaaac	Protospacer
      **      ** ***.******************.

22. spacer 2.111|310786|35|NZ_CP007223|PILER-CR matches to MN693893 (Marine virus AFVG_250M400, complete genome) position: , mismatch: 9, identity: 0.743

atagaaaactcaggagtagcattcccagttatcgt	CRISPR spacer
atataaaactcaggagaagcattccccttcgactc	Protospacer
*** ************ *********  *.. * .

23. spacer 4.25|911035|35|NZ_CP007223|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.743

tcgccgccaatgccaccgtcgtaatggcggtggcc	CRISPR spacer
tttcgggcaatcccaccgtcgtcatggcggtgatg	Protospacer
*. * * **** ********** *********..

24. spacer 2.6|306891|36|NZ_CP007223|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029998 (Salmonella enterica subsp. salamae strain SA20053897 plasmid pSA20053897.3, complete sequence) position: , mismatch: 10, identity: 0.722

agcatggagatattatttttgatatttttagaaatt	CRISPR spacer
agttgctgtttattatctttgatatttttataaatt	Protospacer
**.    .  ******.************* *****

25. spacer 2.6|306891|36|NZ_CP007223|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022035 (Salmonella enterica subsp. enterica serovar Onderstepoort str. SA20060086 plasmid punamed2, complete sequence) position: , mismatch: 10, identity: 0.722

agcatggagatattatttttgatatttttagaaatt	CRISPR spacer
agttgctgtttattatctttgatatttttataaatt	Protospacer
**.    .  ******.************* *****

26. spacer 2.6|306891|36|NZ_CP007223|PILER-CR,CRISPRCasFinder,CRT matches to NC_019342 (Salmonella sp. 14 plasmid p14-120, complete sequence) position: , mismatch: 10, identity: 0.722

agcatggagatattatttttgatatttttagaaatt	CRISPR spacer
agttgctgtttattatctttgatatttttataaatt	Protospacer
**.    .  ******.************* *****

27. spacer 2.18|307741|35|NZ_CP007223|CRISPRCasFinder,CRT matches to MG592441 (Vibrio phage 1.063.O._10N.261.45.C7, partial genome) position: , mismatch: 10, identity: 0.714

attctacaaacatactatttcacctccaacaaaca	CRISPR spacer
ttgcatcaaacatattatttctcctccaacagttt	Protospacer
 * *  ********.****** *********. .

28. spacer 2.33|308814|34|NZ_CP007223|CRISPRCasFinder,CRT matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 10, identity: 0.706

acattttgaccattaacgaagtcagacaagaaat	CRISPR spacer
tcattttgaacattaacaaagtcagagggcaccc	Protospacer
 ******** *******.******** .. *  .

29. spacer 2.33|308814|34|NZ_CP007223|CRISPRCasFinder,CRT matches to MH595538 (Vibrio phage BONAISHI, complete genome) position: , mismatch: 10, identity: 0.706

acattttgaccattaacgaagtcagacaagaaat	CRISPR spacer
ctgtctatcccatcaaagaagtcagacaagaaac	Protospacer
 ..*.*   ****.** ****************.

30. spacer 2.69|307750|35|NZ_CP007223|PILER-CR matches to MG592441 (Vibrio phage 1.063.O._10N.261.45.C7, partial genome) position: , mismatch: 10, identity: 0.714

attctacaaacatactatttcacctccaacaaaca	CRISPR spacer
ttgcatcaaacatattatttctcctccaacagttt	Protospacer
 * *  ********.****** *********. .

31. spacer 2.84|308838|34|NZ_CP007223|PILER-CR matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 10, identity: 0.706

acattttgaccattaacgaagtcagacaagaaat	CRISPR spacer
tcattttgaacattaacaaagtcagagggcaccc	Protospacer
 ******** *******.******** .. *  .

32. spacer 2.84|308838|34|NZ_CP007223|PILER-CR matches to MH595538 (Vibrio phage BONAISHI, complete genome) position: , mismatch: 10, identity: 0.706

acattttgaccattaacgaagtcagacaagaaat	CRISPR spacer
ctgtctatcccatcaaagaagtcagacaagaaac	Protospacer
 ..*.*   ****.** ****************.

33. spacer 4.2|909496|33|NZ_CP007223|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045307 (Legionella longbeachae strain B41211CHC plasmid pB41211CHC_76k, complete sequence) position: , mismatch: 10, identity: 0.697

attgtatatagcagctgatttaaaatttacaga	CRISPR spacer
agcagggataacagctaatttaaaatttacaag	Protospacer
* .. . ***.*****.**************..

34. spacer 4.2|909496|33|NZ_CP007223|PILER-CR,CRISPRCasFinder,CRT matches to NC_014544 (Legionella longbeachae NSW150 plasmid pLLO, complete sequence) position: , mismatch: 10, identity: 0.697

attgtatatagcagctgatttaaaatttacaga	CRISPR spacer
agcagggataacagctaatttaaaatttacaag	Protospacer
* .. . ***.*****.**************..

35. spacer 4.3|909559|36|NZ_CP007223|PILER-CR,CRISPRCasFinder,CRT matches to MN693380 (Marine virus AFVG_25M72, complete genome) position: , mismatch: 10, identity: 0.722

gaaaaagagaatttttagaaacatttgaagatttta	CRISPR spacer
attcaagagaatttttagaaacttttgcaggaacta	Protospacer
.   ****************** **** **.  .**

36. spacer 2.4|306747|35|NZ_CP007223|PILER-CR,CRISPRCasFinder,CRT matches to MN693352 (Marine virus AFVG_25M558, complete genome) position: , mismatch: 11, identity: 0.686

tttggcaaaagg------gctgctgattttcttgctaaagt	CRISPR spacer
------gaaatgcaaactgctgctgattttcttgctaagaa	Protospacer
      .*** *      ********************..

37. spacer 2.6|306891|36|NZ_CP007223|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053469 (Fusobacterium nucleatum strain Fn12230 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.694

agcatggagatattatttttgatatttttagaaatt	CRISPR spacer
ttttctttaatattatttttgatttttttaggaatt	Protospacer
  . .   .************** *******.****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

270548 : 280846

Staphylococcus_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075665283.1\|270548_271169_+	sigma-70 family RNA polymerase sigma factor	A0A0E3D9C3	Bacillus_phage	3.0e-05	32.4
WP_075665284.1\|272381_273440_-	hypothetical protein	NA	NA	NA	NA
WP_075665285.1\|274113_274563_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.2e-26	48.9
WP_077287121.1\|274559_275681_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.4e-71	42.1
WP_075665287.1\|275677_276226_-	riboflavin synthase	A0A1V0SE20	Indivirus	1.3e-20	37.4
WP_077287133.1\|276218_277232_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.6e-51	37.0
WP_075665288.1\|277420_279100_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-10	29.3
WP_075665289.1\|279207_279615_-	SUF system NifU family Fe-S cluster assembly protein	A0A0K1LS29	Mycobacterium_phage	8.9e-06	30.0
WP_075665290.1\|279604_280846_-	SufS family cysteine desulfurase	Q2XUY6	environmental_halophage	6.8e-81	39.5

DBSCAN-SWA_2

386403 : 397553

Tupanvirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075665380.1\|386403_387255_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.3e-22	30.8
WP_075665381.1\|387263_388238_-	ABC transporter permease	NA	NA	NA	NA
WP_075665382.1\|388230_388770_-	macro domain-containing protein	A0A0K1L687	Scale_drop_disease_virus	5.3e-22	38.5
WP_075665383.1\|388753_389986_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.1e-67	39.0
WP_075665384.1\|389954_390887_-	SDR family NAD(P)-dependent oxidoreductase	A0A2K9L4U8	Tupanvirus	1.0e-49	36.7
WP_075665385.1\|390886_391390_-	metal-dependent transcriptional regulator	NA	NA	NA	NA
WP_075665386.1\|391379_391982_-	uracil-DNA glycosylase	A0A2I6PIA1	Pseudomonas_phage	1.2e-19	35.7
WP_075665387.1\|392160_394806_+	pyruvate, phosphate dikinase	H8YJB7	Vibrio_phage	1.6e-92	41.6
WP_075665388.1\|394862_395273_+	hypothetical protein	NA	NA	NA	NA
WP_075665389.1\|395269_396622_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A0N7G7I9	Chrysochromulina_ericina_virus	1.7e-40	44.1
WP_075665390.1\|396602_397553_+	ribose-phosphate pyrophosphokinase	A0A2K9L2G2	Tupanvirus	9.2e-46	36.7

DBSCAN-SWA_3

665644 : 673873

Prochlorococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075665631.1\|665644_666088_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	4.8e-21	39.7
WP_075665632.1\|666090_667188_-	ABC transporter permease	NA	NA	NA	NA
WP_075665633.1\|667201_668362_-	hypothetical protein	A0A172B023	Pseudomonas_phage	3.5e-07	22.8
WP_075665634.1\|668348_668984_-	hypothetical protein	NA	NA	NA	NA
WP_075665635.1\|669045_669954_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F0L1	Synechococcus_phage	1.2e-34	33.4
WP_075665636.1\|669950_671138_-	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_075665637.1\|671147_672041_-	phosphoribosylaminoimidazolecarboxamide formyltransferase	Q58MG4	Prochlorococcus_phage	9.6e-37	34.4
WP_075665638.1\|672056_672614_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	4.0e-25	40.1
WP_075665639.1\|672577_673873_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.1e-41	32.0

DBSCAN-SWA_4

1301318 : 1312276

Escherichia_phage(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075666212.1\|1301318_1302701_-\|tRNA	glutamate--tRNA ligase	A0A222YZ70	Escherichia_phage	2.9e-08	36.4
WP_075666213.1\|1302706_1303213_-	hypothetical protein	NA	NA	NA	NA
WP_075666214.1\|1303209_1303851_-	initiation factor 2B	NA	NA	NA	NA
WP_075666215.1\|1303843_1304794_-	radical SAM protein	A0A076FG07	Aureococcus_anophage	1.4e-14	26.5
WP_075666216.1\|1304790_1305222_-\|tRNA	glutamyl-tRNA amidotransferase	A0A292GL36	Xanthomonas_phage	6.7e-12	39.9
WP_075666217.1\|1305214_1306171_-	histone deacetylase family protein	A0A2K9L0J7	Tupanvirus	2.4e-41	43.5
WP_075666218.1\|1306172_1306610_-	ribose 5-phosphate isomerase B	NA	NA	NA	NA
WP_075666219.1\|1306622_1306961_-	STAS domain-containing protein	NA	NA	NA	NA
WP_075666220.1\|1306973_1307573_-	repressor LexA	A0A1J0MG99	Staphylococcus_phage	6.9e-15	39.8
WP_075666221.1\|1307569_1307938_-	protein archease	NA	NA	NA	NA
WP_075666222.1\|1307930_1310354_-	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	5.4e-98	31.8
WP_075666223.1\|1310368_1312276_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	1.5e-111	39.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP007223

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection