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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP007389 Thermosipho melanesiensis strain 431, complete genome 6 crisprs cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6,DEDDh,csa3,cas3HD,casR,csm6,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx1,csm2gr11,csm3gr7,csm4gr5,csm5gr7 0 2 5 0

Results visualization

1. NZ_CP007389
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007389_1 137986-138684 Orphan NA
10 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007389_2 360035-360533 TypeI-B NA
7 spacers
cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007389_3 754395-758275 Orphan NA
55 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007389_4 866811-866894 TypeI-A NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007389_5 1638809-1639894 TypeIII NA
15 spacers
cas2,cas1,csm6,cmr1gr7,cas10,cmr3gr5,cmr4gr7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP007389_6 1651085-1651956 TypeIII NA
12 spacers
cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csm6,csx1,csm2gr11,csm3gr7,csm4gr5

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 NZ_CP020005 Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence 69567-69600 7 0.794
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 NC_015915 Borreliella bissettii DN127 plasmid lp17, complete sequence 23144-23177 7 0.794
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 NZ_CP020005 Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence 69567-69600 7 0.794
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 NC_015915 Borreliella bissettii DN127 plasmid lp17, complete sequence 23144-23177 7 0.794
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 MN693770 Marine virus AFVG_250M115, complete genome 29873-29906 8 0.765
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 NZ_MK275619 Clostridium perfringens strain JXJA17 plasmid p1, complete sequence 15616-15649 8 0.765
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 NZ_CP007768 Campylobacter peloridis LMG 23910 plasmid pPEL2, complete sequence 3546-3579 8 0.765
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 MN693029 Marine virus AFVG_117M56, complete genome 20832-20865 8 0.765
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 MK496717 Capybara microvirus Cap1_SP_127, complete genome 5001-5034 8 0.765
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 MN693770 Marine virus AFVG_250M115, complete genome 29873-29906 8 0.765
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 NZ_MK275619 Clostridium perfringens strain JXJA17 plasmid p1, complete sequence 15616-15649 8 0.765
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 NZ_CP007768 Campylobacter peloridis LMG 23910 plasmid pPEL2, complete sequence 3546-3579 8 0.765
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 MN693029 Marine virus AFVG_117M56, complete genome 20832-20865 8 0.765
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 MK496717 Capybara microvirus Cap1_SP_127, complete genome 5001-5034 8 0.765
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 NZ_CP040614 Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence 5811-5844 9 0.735
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 NZ_CP048772 Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence 72734-72767 9 0.735
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 NZ_CP040614 Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence 5811-5844 9 0.735
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 NZ_CP048772 Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence 72734-72767 9 0.735
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 NZ_CP044539 Borrelia sp. CA690 plasmid cp26, complete sequence 19985-20018 10 0.706
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 NZ_CP044539 Borrelia sp. CA690 plasmid cp26, complete sequence 19985-20018 10 0.706
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 NZ_CP017256 Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence 81351-81384 11 0.676
NZ_CP007389_3 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT 757855-757888 34 NZ_MG205643 Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence 71659-71692 11 0.676
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 NZ_CP017256 Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence 81351-81384 11 0.676
NZ_CP007389_3 3.105|757856|34|NZ_CP007389|PILER-CR 757856-757889 34 NZ_MG205643 Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence 71659-71692 11 0.676

1. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.794

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
atattttaaatatttataaatttgatgctataaa	Protospacer
.********** *********** ***** .. *

2. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to NC_015915 (Borreliella bissettii DN127 plasmid lp17, complete sequence) position: , mismatch: 7, identity: 0.794

gtattttaaatttttataaatttta----tgcttcgca	CRISPR spacer
ctattttaattttttataaatattaattttgctt----	Protospacer
 ******** *********** ***    *****    

3. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to NZ_CP020005 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.794

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
atattttaaatatttataaatttgatgctataaa	Protospacer
.********** *********** ***** .. *

4. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to NC_015915 (Borreliella bissettii DN127 plasmid lp17, complete sequence) position: , mismatch: 7, identity: 0.794

gtattttaaatttttataaatttta----tgcttcgca	CRISPR spacer
ctattttaattttttataaatattaattttgctt----	Protospacer
 ******** *********** ***    *****    

5. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to MN693770 (Marine virus AFVG_250M115, complete genome) position: , mismatch: 8, identity: 0.765

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
gtattttaaagttttataaattttagggaggtta	Protospacer
********** ************** *     .*

6. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to NZ_MK275619 (Clostridium perfringens strain JXJA17 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
gtcttttaaatttttataatttttaggtatatta	Protospacer
** **************** ***** *. *  .*

7. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to NZ_CP007768 (Campylobacter peloridis LMG 23910 plasmid pPEL2, complete sequence) position: , mismatch: 8, identity: 0.765

gtattttaaatttttataaattt----tatgcttcgca	CRISPR spacer
gttttttaaatttttttaaattttttatatattt----	Protospacer
** ************ *******    ***..**    

8. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to MN693029 (Marine virus AFVG_117M56, complete genome) position: , mismatch: 8, identity: 0.765

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
taattttaaatttgcataaattttatttttagaa	Protospacer
  *********** .*********** .** * *

9. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to MK496717 (Capybara microvirus Cap1_SP_127, complete genome) position: , mismatch: 8, identity: 0.765

gtattttaaatttttataaatttt-----atgcttcgca	CRISPR spacer
gttttttaaatttttataaatgtttttaagtgct-----	Protospacer
** ****************** **     .****     

10. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to MN693770 (Marine virus AFVG_250M115, complete genome) position: , mismatch: 8, identity: 0.765

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
gtattttaaagttttataaattttagggaggtta	Protospacer
********** ************** *     .*

11. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to NZ_MK275619 (Clostridium perfringens strain JXJA17 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.765

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
gtcttttaaatttttataatttttaggtatatta	Protospacer
** **************** ***** *. *  .*

12. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to NZ_CP007768 (Campylobacter peloridis LMG 23910 plasmid pPEL2, complete sequence) position: , mismatch: 8, identity: 0.765

gtattttaaatttttataaattt----tatgcttcgca	CRISPR spacer
gttttttaaatttttttaaattttttatatattt----	Protospacer
** ************ *******    ***..**    

13. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to MN693029 (Marine virus AFVG_117M56, complete genome) position: , mismatch: 8, identity: 0.765

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
taattttaaatttgcataaattttatttttagaa	Protospacer
  *********** .*********** .** * *

14. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to MK496717 (Capybara microvirus Cap1_SP_127, complete genome) position: , mismatch: 8, identity: 0.765

gtattttaaatttttataaatttt-----atgcttcgca	CRISPR spacer
gttttttaaatttttataaatgtttttaagtgct-----	Protospacer
** ****************** **     .****     

15. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to NZ_CP040614 (Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
aaatttttaatctttataaattttatttttttta	Protospacer
. ***** ***.************** .**. .*

16. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 9, identity: 0.735

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
aaatttttaatctttataaattttatttttttta	Protospacer
. ***** ***.************** .**. .*

17. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to NZ_CP040614 (Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
aaatttttaatctttataaattttatttttttta	Protospacer
. ***** ***.************** .**. .*

18. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to NZ_CP048772 (Campylobacter jejuni strain ZS007 plasmid pCJ145K, complete sequence) position: , mismatch: 9, identity: 0.735

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
aaatttttaatctttataaattttatttttttta	Protospacer
. ***** ***.************** .**. .*

19. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to NZ_CP044539 (Borrelia sp. CA690 plasmid cp26, complete sequence) position: , mismatch: 10, identity: 0.706

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
gtatttttaatttttaaaaattttttattctttt	Protospacer
******* ******** ******* *..*.. . 

20. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to NZ_CP044539 (Borrelia sp. CA690 plasmid cp26, complete sequence) position: , mismatch: 10, identity: 0.706

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
gtatttttaatttttaaaaattttttattctttt	Protospacer
******* ******** ******* *..*.. . 

21. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 11, identity: 0.676

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
gtagttttaatttttataaattttgattaatata	Protospacer
*** *** ****************.  .  ...*

22. spacer 3.50|757855|34|NZ_CP007389|CRISPRCasFinder,CRT matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 11, identity: 0.676

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
ttattttaaaattttttaaattttaactaattta	Protospacer
 ********* **** *********  .  . .*

23. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 11, identity: 0.676

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
gtagttttaatttttataaattttgattaatata	Protospacer
*** *** ****************.  .  ...*

24. spacer 3.105|757856|34|NZ_CP007389|PILER-CR matches to NZ_MG205643 (Paeniclostridium sordellii strain S0804018 plasmid pCS1-5, complete sequence) position: , mismatch: 11, identity: 0.676

gtattttaaatttttataaattttatgcttcgca	CRISPR spacer
ttattttaaaattttttaaattttaactaattta	Protospacer
 ********* **** *********  .  . .*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 44468 : 52322 8 Staphylococcus_phage(42.86%) NA NA
DBSCAN-SWA_2 162597 : 173762 11 Tupanvirus(25.0%) NA NA
DBSCAN-SWA_3 396905 : 405136 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 539811 : 547383 7 uncultured_Mediterranean_phage(28.57%) NA NA
DBSCAN-SWA_5 1241872 : 1250648 9 Erysipelothrix_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage