CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP017997	Lactobacillus crustorum strain MN047 plasmid unnamed1, complete sequence	0 crisprs	NA	0
NZ_CP017998	Lactobacillus crustorum strain MN047 plasmid unnamed2, complete sequence	0 crisprs	NA	0
NZ_CP017996	Lactobacillus crustorum strain MN047 chromosome, complete genome	0 crisprs	WYL,DinG,cas3,DEDDh,csa3	4

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

112512 : 159897

Bacillus_phage(20.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075888263.1\|112512_113784_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_075887227.1\|113997_115671_+	alpha-glucosidase	NA	NA	NA	NA
WP_075887228.1\|115795_116383_+	helix-turn-helix transcriptional regulator	A0A0A7S0F1	Clostridium_phage	3.1e-07	40.2
WP_075887229.1\|116387_117239_-	DUF814 domain-containing protein	NA	NA	NA	NA
WP_075887230.1\|117314_117950_-	hypothetical protein	NA	NA	NA	NA
WP_057867379.1\|118078_118999_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	8.2e-15	23.4
WP_075887231.1\|119323_119758_+	MaoC family dehydratase	NA	NA	NA	NA
WP_057867392.1\|119847_120636_-	crotonase	NA	NA	NA	NA
WP_057867381.1\|121028_121781_+	aquaporin family protein	M1HWZ0	Paramecium_bursaria_Chlorella_virus	3.3e-30	32.0
WP_057867382.1\|122282_123494_+	trans-2-enoyl-CoA reductase family protein	NA	NA	NA	NA
WP_057867383.1\|123580_125176_+	3-oxoacid CoA-transferase	NA	NA	NA	NA
WP_075887232.1\|125339_126245_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_075887233.1\|126403_127183_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_075887234.1\|127872_128808_+	2-nitropropane dioxygenase	NA	NA	NA	NA
WP_075887235.1\|128935_130435_+	glycerol kinase GlpK	NA	NA	NA	NA
WP_057867388.1\|130491_132270_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_075887236.1\|132315_133263_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_075888263.1\|133410_134682_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_075887237.1\|134820_135831_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_075887238.1\|136016_136841_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_057868280.1\|136855_137677_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_083656899.1\|137728_139153_+	arylsulfatase	NA	NA	NA	NA
WP_057868279.1\|139165_140017_+	formylglycine-generating enzyme family protein	A0A075BSL8	Microcystis_phage	8.1e-17	27.6
WP_057868278.1\|140009_140792_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_057868277.1\|140922_141909_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_075887240.1\|142166_142658_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_103429381.1\|142668_143472_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_075887241.1\|143464_144325_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_083656831.1\|144340_145102_+	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_057868273.1\|145117_145918_+	hypothetical protein	NA	NA	NA	NA
WP_075887243.1\|145910_147212_+	hypothetical protein	NA	NA	NA	NA
WP_075887245.1\|147306_148236_+\|transposase	IS30-like element ISLpl1 family transposase	H7BW61	unidentified_phage	1.1e-19	29.9
WP_075887246.1\|148486_149833_+	PTS cellobiose transporter subunit IIC	NA	NA	NA	NA
WP_002331365.1\|150251_150785_+	helix-turn-helix domain-containing protein	A0A1B1P776	Bacillus_phage	1.1e-08	26.9
WP_156866595.1\|150736_151681_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.1e-41	35.8
WP_075887248.1\|151743_154011_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	1.7e-125	30.8
WP_083656833.1\|154703_155531_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_083656834.1\|155638_156019_-	GNAT family N-acetyltransferase	A0A1X9I687	Streptococcus_phage	7.2e-26	47.9
WP_075887251.1\|156239_157169_+	ferrochelatase	NA	NA	NA	NA
WP_075887252.1\|157173_158496_+	Mn(2+) uptake NRAMP transporter MntH	NA	NA	NA	NA
WP_075887253.1\|158583_159897_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	6.1e-48	31.6

DBSCAN-SWA_2

163431 : 222417

Bacillus_phage(35.71%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075887255.1\|163431_164274_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_075887256.1\|164500_165469_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	7.3e-06	25.1
WP_075887257.1\|165638_166568_+\|transposase	IS30 family transposase	H7BW61	unidentified_phage	1.1e-19	29.9
WP_075887258.1\|167301_167805_-	GtrA family protein	NA	NA	NA	NA
WP_075887259.1\|168164_168698_+	hypothetical protein	NA	NA	NA	NA
WP_156866595.1\|168733_169678_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	3.1e-41	35.8
WP_002331365.1\|169629_170163_-	helix-turn-helix domain-containing protein	A0A1B1P776	Bacillus_phage	1.1e-08	26.9
WP_083656836.1\|170264_171278_+	hypothetical protein	NA	NA	NA	NA
WP_075887260.1\|171448_172402_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_057867062.1\|172401_172836_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_075887261.1\|172957_173782_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_057867064.1\|173824_174394_-	hypothetical protein	NA	NA	NA	NA
WP_057867065.1\|174512_175058_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
WP_075887263.1\|175546_176248_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.2e-39	40.6
WP_075887264.1\|176381_178277_+	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	1.4e-32	32.4
WP_075887265.1\|178266_179580_+	hypothetical protein	NA	NA	NA	NA
WP_075887266.1\|179580_180399_+	hypothetical protein	NA	NA	NA	NA
WP_075887267.1\|180367_181192_+	MBL fold metallo-hydrolase	A0A2H4J3R0	uncultured_Caudovirales_phage	1.1e-34	33.7
WP_083656837.1\|181273_182659_+	PDZ domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	3.9e-21	30.0
WP_075887268.1\|183058_183538_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA
WP_083656838.1\|183642_185013_+	hypothetical protein	NA	NA	NA	NA
WP_075887270.1\|185096_186035_-	nucleoside hydrolase	NA	NA	NA	NA
WP_057867074.1\|186047_186470_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_075887271.1\|186687_187332_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_057867076.1\|187425_188355_+	hypothetical protein	NA	NA	NA	NA
WP_075887272.1\|188681_190148_+	MFS transporter	NA	NA	NA	NA
WP_057867077.1\|190524_191898_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_082596224.1\|191928_192441_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_057867079.1\|193041_193425_-	YxeA family protein	NA	NA	NA	NA
WP_075887273.1\|193661_194786_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	A0A218MNE0	uncultured_virus	2.7e-68	40.9
WP_057867081.1\|195474_196494_-	D-2-hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	8.1e-48	33.3
WP_057867082.1\|196646_197567_-	DMT family transporter	NA	NA	NA	NA
WP_057867083.1\|197893_199330_-	C69 family dipeptidase	NA	NA	NA	NA
WP_075887274.1\|199457_200750_+	purine permease	NA	NA	NA	NA
WP_075887275.1\|200874_201654_+	hypothetical protein	NA	NA	NA	NA
WP_075887276.1\|201812_202613_+	FAD:protein FMN transferase	NA	NA	NA	NA
WP_075887277.1\|202702_203587_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.0e-63	44.1
WP_075887278.1\|203727_205590_+	fructose-bisphosphatase class III	NA	NA	NA	NA
WP_156401763.1\|205806_205950_+	hypothetical protein	NA	NA	NA	NA
WP_156401765.1\|205966_206116_+	hypothetical protein	NA	NA	NA	NA
WP_057867090.1\|206553_206748_-	helix-turn-helix transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	2.2e-07	50.9
WP_075887279.1\|207016_208363_-	hypothetical protein	Q9KX94	Enterobacteria_phage	8.2e-64	36.7
WP_057867092.1\|208567_209176_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_075887280.1\|209185_209890_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
WP_075887281.1\|210125_211079_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_057867095.1\|212159_212984_+	hypothetical protein	NA	NA	NA	NA
WP_057867096.1\|213126_213564_-	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_057867097.1\|213735_214095_+	DUF488 family protein	NA	NA	NA	NA
WP_057867122.1\|214242_214968_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_057867098.1\|215092_216493_+	amino acid permease	NA	NA	NA	NA
WP_147000149.1\|217132_217339_+	hypothetical protein	NA	NA	NA	NA
WP_075887282.1\|217591_218359_-	TerC family protein	A0A068EP98	Bacillus_phage	2.6e-46	45.2
WP_057867100.1\|218700_220065_-	divalent metal cation transporter	NA	NA	NA	NA
WP_057867101.1\|220381_220849_+	hypothetical protein	NA	NA	NA	NA
WP_083656839.1\|220919_221576_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_057867103.1\|221685_222417_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_3

885493 : 895494

Tetraselmis_virus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_057866761.1\|885493_885976_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.9e-21	43.9
WP_075887587.1\|885968_887099_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_057866832.1\|887105_887810_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	NA	NA	NA
WP_057866763.1\|887819_888068_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_057866764.1\|888068_888740_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_075887588.1\|888739_890953_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.5e-143	40.4
WP_075887589.1\|890937_892344_+	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.8e-50	29.8
WP_075887590.1\|892355_893378_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A127KMF9	Cyanophage	1.7e-66	45.3
WP_075887591.1\|893371_893953_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.4e-27	38.1
WP_057866768.1\|893949_895494_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	2.7e-71	46.2

DBSCAN-SWA_4

2208103 : 2218454

Enterococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_075888246.1\|2208103_2209432_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.4e-92	44.4
WP_057868316.1\|2209531_2210182_-	ribose 5-phosphate isomerase A	NA	NA	NA	NA
WP_057868317.1\|2210684_2211740_+	CAP domain-containing protein	NA	NA	NA	NA
WP_083656905.1\|2211870_2212437_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	9.5e-14	39.7
WP_057868319.1\|2212796_2213354_-	guanylate kinase	A0A1W6JK60	Lactococcus_phage	7.1e-14	33.3
WP_057868320.1\|2213438_2213651_+	hypothetical protein	NA	NA	NA	NA
WP_075888248.1\|2213751_2214378_-	hypothetical protein	NA	NA	NA	NA
WP_057868322.1\|2214650_2214881_+	glutaredoxin-like protein NrdH	X2KRY7	Enterococcus_phage	3.0e-11	44.7
WP_057868323.1\|2214883_2215255_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A142F1R4	Bacillus_phage	4.4e-12	34.4
WP_075888249.1\|2215241_2217413_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	4.4e-253	60.1
WP_057868325.1\|2217428_2218454_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	2.8e-117	64.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage