CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP007193	Campylobacter jejuni strain NS4-9-1, complete genome	2 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9	0	9	1	0

1. NZ_CP007193

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP007193_1

• CRISPR_ID: NZ_CP007193_1
• CRISPR_location: 1342309-1342388
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP007193_1

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

spacers of NZ_CP007193_1

>1.1|1342332|34|NZ_CP007193|CRISPRCasFinder
TTTTTTAGCTTTATACTCAGCCTTACTCATATAA

CRISPR arrays and Neighbor proteins around NZ_CP007193_1

CRISPR arrays

The CRISPR arrays of NZ_CP007193_1

>merge|NZ_CP007193|1|1342309-1342388|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP007193|1|1|1342309-1342388|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007193.1|WP_002855518.1|1345066_1345486_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP007193.1|WP_019108711.1|1346840_1347962_-|membrane-protein	unknown	unknown	unknown
NZ_CP007193.1|WP_002855324.1|1339072_1340275_-|phosphoglycerate-kinase	unknown	unknown	gnl|CDD|234613
NZ_CP007193.1|WP_002780453.1|1340277_1341276_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|223135
NZ_CP007193.1|WP_002855470.1|1341335_1341881_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|223985
NZ_CP007193.1|WP_002855339.1|1341908_1342235_+|ribosome-silencing-factor	unknown	unknown	gnl|CDD|223870
NZ_CP007193.1|WP_002852383.1|1342690_1344061_-|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl|CDD|100091
NZ_CP007193.1|WP_002855528.1|1338404_1339076_-|triose-phosphate-isomerase	unknown	unknown	gnl|CDD|234589
NZ_CP007193.1|WP_002780456.1|1337576_1338401_-|enoyl-ACP-reductase-FabI	unknown	unknown	gnl|CDD|181416
NZ_CP007193.1|WP_002864208.1|1351281_1351794_-|adenylyl-sulfate-kinase	unknown	unknown	gnl|CDD|235498
NZ_CP007193.1|WP_002779147.1|1334020_1334245_+|ferrous-iron-transport-protein-A	unknown	unknown	gnl|CDD|224830
NZ_CP007193.1|WP_002857989.1|1331222_1332590_+|adenylosuccinate-lyase	unknown	unknown	gnl|CDD|176469
NZ_CP007193.1|WP_002857981.1|1348034_1349219_-|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl|CDD|226092
NZ_CP007193.1|WP_075867370.1|1345482_1346844_-|cytochrome-P450	unknown	unknown	gnl|CDD|225035
NZ_CP007193.1|WP_002855435.1|1334241_1336083_+|ferrous-iron-transport-protein-B	unknown	unknown	gnl|CDD|223447
NZ_CP007193.1|WP_002855429.1|1344182_1344719_+|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl|CDD|181433
NZ_CP007193.1|WP_002825806.1|1344718_1345066_+|holo-ACP-synthase	unknown	unknown	gnl|CDD|223807
NZ_CP007193.1|WP_002855407.1|1336079_1337573_-|hydrogenase-small-subunit	unknown	unknown	gnl|CDD|224654
NZ_CP007193.1|WP_002864207.1|1351783_1352545_-|NTP-transferase-domain-containing-protein	unknown	unknown	gnl|CDD|224134
NZ_CP007193.1|WP_002864209.1|1349215_1351285_-|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl|CDD|226093

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP007193.1|WP_002855324.1|1339072_1340275_-|phosphoglycerate-kinase	gnl|CDD|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP007193.1|WP_002780453.1|1340277_1341276_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl|CDD|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.96117e-168
NZ_CP007193.1|WP_002855470.1|1341335_1341881_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl|CDD|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.16494e-57
NZ_CP007193.1|WP_002855339.1|1341908_1342235_+|ribosome-silencing-factor	gnl|CDD|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	8.97235e-38
NZ_CP007193.1|WP_002852383.1|1342690_1344061_-|phosphoglucosamine-mutase-PgmL	gnl|CDD|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP007193.1|WP_002855528.1|1338404_1339076_-|triose-phosphate-isomerase	gnl|CDD|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.79646e-86
NZ_CP007193.1|WP_002780456.1|1337576_1338401_-|enoyl-ACP-reductase-FabI	gnl|CDD|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP007193.1|WP_002864208.1|1351281_1351794_-|adenylyl-sulfate-kinase	gnl|CDD|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	2.94731e-100
NZ_CP007193.1|WP_002779147.1|1334020_1334245_+|ferrous-iron-transport-protein-A	gnl|CDD|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP007193.1|WP_002857989.1|1331222_1332590_+|adenylosuccinate-lyase	gnl|CDD|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0
NZ_CP007193.1|WP_002857981.1|1348034_1349219_-|capsule-polysaccharide-modification-protein-KpsS	gnl|CDD|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP007193.1|WP_075867370.1|1345482_1346844_-|cytochrome-P450	gnl|CDD|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	1.64961e-77
NZ_CP007193.1|WP_002855435.1|1334241_1336083_+|ferrous-iron-transport-protein-B	gnl|CDD|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP007193.1|WP_002855429.1|1344182_1344719_+|flagellar-basal-body-associated-protein-FliL	gnl|CDD|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.19231e-91
NZ_CP007193.1|WP_002825806.1|1344718_1345066_+|holo-ACP-synthase	gnl|CDD|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.71491e-40
NZ_CP007193.1|WP_002855407.1|1336079_1337573_-|hydrogenase-small-subunit	gnl|CDD|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	4.17824e-157
NZ_CP007193.1|WP_002864207.1|1351783_1352545_-|NTP-transferase-domain-containing-protein	gnl|CDD|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	4.42626e-75
NZ_CP007193.1|WP_002864209.1|1349215_1351285_-|capsular-polysaccharide-biosynthesis-protein	gnl|CDD|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0

Protein sequences

>NZ_CP007193.1|WP_002855339.1|1341908_1342235_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP007193.1|WP_002855470.1|1341335_1341881_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVILEALEKLDIDKLIIMPTYINPFKQNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP007193.1|WP_002780453.1|1340277_1341276_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP007193.1|WP_002855324.1|1339072_1340275_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP007193.1|WP_002855528.1|1338404_1339076_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP007193.1|WP_002780456.1|1337576_1338401_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP007193.1|WP_002855407.1|1336079_1337573_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYTFIEQNFDENPMPSKDFWKYLEISFILVKGEFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS
>NZ_CP007193.1|WP_002855435.1|1334241_1336083_+|ferrous-iron-transport-protein-B
MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAKTFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSAELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKIIILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIHKFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGEFVKNNISNTFIASALADGIIAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGFGCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGIYILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWYLVWFMVYNKAKMYLKKAGTFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKSIEPIFQPLELDWKLSVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIYNPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN
>NZ_CP007193.1|WP_002779147.1|1334020_1334245_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP007193.1|WP_002857989.1|1331222_1332590_+|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVYENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKNSAILK
>NZ_CP007193.1|WP_002852383.1|1342690_1344061_-|phosphoglucosamine-mutase-PgmL
MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAKPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTYVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEIKARLKN
>NZ_CP007193.1|WP_002855429.1|1344182_1344719_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP007193.1|WP_002825806.1|1344718_1345066_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAIV
>NZ_CP007193.1|WP_002855518.1|1345066_1345486_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFIISRNLDKQTIGK
>NZ_CP007193.1|WP_075867370.1|1345482_1346844_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLHPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAIIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKDSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKREL
>NZ_CP007193.1|WP_019108711.1|1346840_1347962_-|membrane-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKADLSKIEKNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQEKIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP007193.1|WP_002857981.1|1348034_1349219_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYFKLINDLSRKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYNFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP007193.1|WP_002864209.1|1349215_1351285_-|capsular-polysaccharide-biosynthesis-protein
MKYYSTSKKLIANARNFYTISLYKKNLKIKKDDLFFGWGRKKSGLKAINLAKKHKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLLNTYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDTSLEFGLAKDFKTLDMIKDAIKENSKSKIYIKIHPDVLSSKKQSDLDLNSLPKECILITENFNPIALLEFFDKVYTKTSGMGFEALMQGCECVCYGMPFYAGWGLTKDELECKRRVRKRSLEEVFYAAYMLYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKVNSNKLFMLGFTLWKRHFIKPFFKAKDNEIIFLNSLKSLARYKLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRIRKLSLEELVAGALIIYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP007193.1|WP_002864208.1|1351281_1351794_-|adenylyl-sulfate-kinase
MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDKQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELMQRDQKGLYTKVLNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEKVEFIIKKLAL
>NZ_CP007193.1|WP_002864207.1|1351783_1352545_-|NTP-transferase-domain-containing-protein
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNEVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWCKLWSKRFTNPLEDAETLKMTNGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK

Crispr_ID: NZ_CP007193_2

• CRISPR_ID: NZ_CP007193_2
• CRISPR_location: 1458060-1458426
• CRISPR_type: orTypeII
• Repeat_type: NA
• Spacer_info: 5 spacers
• Cas_protein_info: cas2,cas1,cas9

Consensus repeat of NZ_CP007193_2

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	PILER-CR

spacers of NZ_CP007193_2

>2.1|1458096|30|NZ_CP007193|CRISPRCasFinder,CRT
TATGGCAGTTTTTAAAAGAGCTTGGCGGTT
>2.2|1458162|30|NZ_CP007193|CRISPRCasFinder,CRT
TTTCCAAAGTTTCATTAGTTGAATTTAACT
>2.3|1458228|30|NZ_CP007193|CRISPRCasFinder,CRT
AGGGGAGATATTGTTATGAGTATTATGCAG
>2.4|1458294|30|NZ_CP007193|CRISPRCasFinder,CRT
AAAATAAGCCCATTTATCTATTAAAAAGCT
>2.5|1458360|31|NZ_CP007193|CRISPRCasFinder,CRT
TAAGTGATATGTTATTAAGATTTAAAAGTGA
>2.6|1458097|30|NZ_CP007193|PILER-CR
TATGGCAGTTTTTAAAAGAGCTTGGCGGTT
>2.7|1458163|30|NZ_CP007193|PILER-CR
TTTCCAAAGTTTCATTAGTTGAATTTAACT
>2.8|1458229|30|NZ_CP007193|PILER-CR
AGGGGAGATATTGTTATGAGTATTATGCAG
>2.9|1458295|30|NZ_CP007193|PILER-CR
AAAATAAGCCCATTTATCTATTAAAAAGCT
>2.10|1458361|31|NZ_CP007193|PILER-CR
TAAGTGATATGTTATTAAGATTTAAAAGTGA

CRISPR arrays and Neighbor proteins around NZ_CP007193_2

CRISPR arrays

The CRISPR arrays of NZ_CP007193_2

>merge|NZ_CP007193|2|1458060-1458426|CRISPRCasFinder,CRT,PILER-CR
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTATGGCAGTTTTTAAAAGAGCTTGGCGGTTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTTTCCAAAGTTTCATTAGTTGAATTTAACTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAGGGGAGATATTGTTATGAGTATTATGCAGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAAAATAAGCCCATTTATCTATTAAAAAGCTGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTAAGTGATATGTTATTAAGATTTAAAAGTGAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP007193|2|2|1458060-1458426|CRISPRCasFinder
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGGCAGTTTTTAAAAGAGCTTGGCGGTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGGGAGATATTGTTATGAGTATTATGCAG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AAAATAAGCCCATTTATCTATTAAAAAGCT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAAGTGATATGTTATTAAGATTTAAAAGTGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP007193|2|1|1458060-1458426|CRT
ATTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TATGGCAGTTTTTAAAAGAGCTTGGCGGTT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TTTCCAAAGTTTCATTAGTTGAATTTAACT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AGGGGAGATATTGTTATGAGTATTATGCAG
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	AAAATAAGCCCATTTATCTATTAAAAAGCT
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAAGTGATATGTTATTAAGATTTAAAAGTGA
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

>NZ_CP007193|2|1|1458061-1458426|PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	ATGGCAGTTTTTAAAAGAGCTTGGCGGTTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	TTCCAAAGTTTCATTAGTTGAATTTAACTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	GGGGAGATATTGTTATGAGTATTATGCAGG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	AAATAAGCCCATTTATCTATTAAAAAGCTG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATT	AAGTGATATGTTATTAAGATTTAAAAGTGAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP007193.1|WP_002855462.1|1469290_1470511_-|glucose-6-phosphate-isomerase	unknown	unknown	gnl|CDD|235168
NZ_CP007193.1|WP_002797819.1|1458994_1459885_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|187851
NZ_CP007193.1|WP_002858151.1|1456749_1457940_+|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl|CDD|223380
NZ_CP007193.1|WP_075867376.1|1466157_1466907_+|diaminopimelate-epimerase	unknown	unknown	gnl|CDD|234768
NZ_CP007193.1|WP_002851523.1|1465555_1466161_+|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|234620
NZ_CP007193.1|WP_002851502.1|1452245_1452959_-|hypothetical-protein	unknown	unknown	gnl|CDD|225916
NZ_CP007193.1|WP_002851155.1|1467609_1468647_-|ATP-binding-protein	unknown	unknown	gnl|CDD|224292
NZ_CP007193.1|WP_075867373.1|1459881_1462836_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226044
NZ_CP007193.1|WP_010891941.1|1449275_1452080_-|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl|CDD|239153
NZ_CP007193.1|WP_002851264.1|1448637_1449279_-|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|319893
NZ_CP007193.1|WP_002797817.1|1458570_1459002_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NZ_CP007193.1|WP_002851546.1|1468711_1469161_-|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|223854
NZ_CP007193.1|WP_002851537.1|1452079_1452271_-|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl|CDD|236534
NZ_CP007193.1|WP_002781229.1|1456299_1456746_+|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl|CDD|223391
NZ_CP007193.1|WP_002851407.1|1466881_1467613_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	unknown	unknown	gnl|CDD|225539
NZ_CP007193.1|WP_002851174.1|1447708_1448641_-|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl|CDD|130645
NZ_CP007193.1|WP_002857949.1|1456077_1456299_+|MoaD/ThiS-family-protein	unknown	unknown	gnl|CDD|224888
NZ_CP007193.1|WP_002858205.1|1454534_1456076_+|multicopper-oxidase-CueO	unknown	unknown	gnl|CDD|225043
NZ_CP007193.1|WP_002858431.1|1453262_1454411_-|carboxynorspermidine-decarboxylase	unknown	unknown	gnl|CDD|273414
NZ_CP007193.1|WP_002851320.1|1464505_1465495_-|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl|CDD|235439

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP007193.1|WP_075867373.1|1459881_1462836_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	0	1184.3	71.3
NZ_CP007193.1|WP_002797819.1|1458994_1459885_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	5.4e-99	325.5	10.2
NZ_CP007193.1|WP_002797817.1|1458570_1459002_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	5.1e-59	192.3	1.5

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP007193.1|WP_002855462.1|1469290_1470511_-|glucose-6-phosphate-isomerase	gnl|CDD|235168	PRK03868, PRK03868, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP007193.1|WP_002797819.1|1458994_1459885_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.93781e-121
NZ_CP007193.1|WP_002858151.1|1456749_1457940_+|molybdopterin-molybdotransferase-MoeA	gnl|CDD|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
NZ_CP007193.1|WP_075867376.1|1466157_1466907_+|diaminopimelate-epimerase	gnl|CDD|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.4728e-92
NZ_CP007193.1|WP_002851523.1|1465555_1466161_+|dephospho-CoA-kinase	gnl|CDD|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	5.24929e-70
NZ_CP007193.1|WP_002851502.1|1452245_1452959_-|hypothetical-protein	gnl|CDD|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.00059716
NZ_CP007193.1|WP_002851155.1|1467609_1468647_-|ATP-binding-protein	gnl|CDD|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.54942e-34
NZ_CP007193.1|WP_075867373.1|1459881_1462836_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP007193.1|WP_010891941.1|1449275_1452080_-|formate-dehydrogenase-subunit-alpha	gnl|CDD|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP007193.1|WP_002851264.1|1448637_1449279_-|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP007193.1|WP_002797817.1|1458570_1459002_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	4.92184e-59
NZ_CP007193.1|WP_002851546.1|1468711_1469161_-|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP007193.1|WP_002851537.1|1452079_1452271_-|twin-arginine-translocation-signal-domain-containing-protein	gnl|CDD|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP007193.1|WP_002781229.1|1456299_1456746_+|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl|CDD|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NZ_CP007193.1|WP_002851407.1|1466881_1467613_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase	gnl|CDD|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.12305e-102
NZ_CP007193.1|WP_002851174.1|1447708_1448641_-|formate-dehydrogenase-subunit-gamma	gnl|CDD|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.78832e-90
NZ_CP007193.1|WP_002857949.1|1456077_1456299_+|MoaD/ThiS-family-protein	gnl|CDD|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	2.76562e-11
NZ_CP007193.1|WP_002858205.1|1454534_1456076_+|multicopper-oxidase-CueO	gnl|CDD|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	2.73566e-121
NZ_CP007193.1|WP_002858431.1|1453262_1454411_-|carboxynorspermidine-decarboxylase	gnl|CDD|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP007193.1|WP_002851320.1|1464505_1465495_-|phosphoribosylformylglycinamidine-cyclo-ligase	gnl|CDD|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0

Protein sequences

>NZ_CP007193.1|WP_002858151.1|1456749_1457940_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP007193.1|WP_002781229.1|1456299_1456746_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP007193.1|WP_002857949.1|1456077_1456299_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFNENTKLKDGDKIALLPPVCGG
>NZ_CP007193.1|WP_002858205.1|1454534_1456076_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLKMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP007193.1|WP_002858431.1|1453262_1454411_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP007193.1|WP_002851502.1|1452245_1452959_-|hypothetical-protein
MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP007193.1|WP_002851537.1|1452079_1452271_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP007193.1|WP_010891941.1|1449275_1452080_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP007193.1|WP_002851264.1|1448637_1449279_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP007193.1|WP_002851174.1|1447708_1448641_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRMLPASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP007193.1|WP_002797817.1|1458570_1459002_-|CRISPR-associated-endonuclease-Cas2
MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP007193.1|WP_002797819.1|1458994_1459885_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP007193.1|WP_075867373.1|1459881_1462836_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQSVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFNKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLVTPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKNFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP007193.1|WP_002851320.1|1464505_1465495_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE
>NZ_CP007193.1|WP_002851523.1|1465555_1466161_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENALELEKIFSPFSLKNLLKKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGNM
>NZ_CP007193.1|WP_075867376.1|1466157_1466907_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANINFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFF
>NZ_CP007193.1|WP_002851407.1|1466881_1467613_+|mannosyl-glycoprotein-endo-beta-N-acetylglucosamidase
MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP007193.1|WP_002851155.1|1467609_1468647_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NZ_CP007193.1|WP_002851546.1|1468711_1469161_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM
>NZ_CP007193.1|WP_002855462.1|1469290_1470511_-|glucose-6-phosphate-isomerase
MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNLIDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFNKTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLHQEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKKDEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIALIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELLNAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPGVEVGKLILKNILNS

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP007193_2	2.1|1458096|30|NZ_CP007193|CRISPRCasFinder,CRT	1458096-1458125	30	MN530981	Campylobacter phage DA10, complete genome	5259-5288	0	1.0
NZ_CP007193_2	2.2|1458162|30|NZ_CP007193|CRISPRCasFinder,CRT	1458162-1458191	30	MN530981	Campylobacter phage DA10, complete genome	33283-33312	0	1.0
NZ_CP007193_2	2.6|1458097|30|NZ_CP007193|PILER-CR	1458097-1458126	30	MN530981	Campylobacter phage DA10, complete genome	5259-5288	0	1.0
NZ_CP007193_2	2.7|1458163|30|NZ_CP007193|PILER-CR	1458163-1458192	30	MN530981	Campylobacter phage DA10, complete genome	33283-33312	0	1.0
NZ_CP007193_2	2.5|1458360|31|NZ_CP007193|CRISPRCasFinder,CRT	1458360-1458390	31	MN530981	Campylobacter phage DA10, complete genome	17956-17986	1	0.968
NZ_CP007193_2	2.10|1458361|31|NZ_CP007193|PILER-CR	1458361-1458391	31	MN530981	Campylobacter phage DA10, complete genome	17956-17986	1	0.968
NZ_CP007193_2	2.3|1458228|30|NZ_CP007193|CRISPRCasFinder,CRT	1458228-1458257	30	MN530981	Campylobacter phage DA10, complete genome	11419-11448	2	0.933
NZ_CP007193_2	2.8|1458229|30|NZ_CP007193|PILER-CR	1458229-1458258	30	MN530981	Campylobacter phage DA10, complete genome	11419-11448	2	0.933
NZ_CP007193_2	2.5|1458360|31|NZ_CP007193|CRISPRCasFinder,CRT	1458360-1458390	31	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	615548-615578	7	0.774
NZ_CP007193_2	2.10|1458361|31|NZ_CP007193|PILER-CR	1458361-1458391	31	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	615548-615578	7	0.774
NZ_CP007193_2	2.1|1458096|30|NZ_CP007193|CRISPRCasFinder,CRT	1458096-1458125	30	MG676225	Aeromonas phage AhSzw-1, complete genome	109812-109841	8	0.733
NZ_CP007193_2	2.2|1458162|30|NZ_CP007193|CRISPRCasFinder,CRT	1458162-1458191	30	MG602477	Bacillus phage BCP01, complete genome	154164-154193	8	0.733
NZ_CP007193_2	2.2|1458162|30|NZ_CP007193|CRISPRCasFinder,CRT	1458162-1458191	30	KX495186	Bacillus phage PK16, complete genome	23957-23986	8	0.733
NZ_CP007193_2	2.3|1458228|30|NZ_CP007193|CRISPRCasFinder,CRT	1458228-1458257	30	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	25137-25166	8	0.733
NZ_CP007193_2	2.3|1458228|30|NZ_CP007193|CRISPRCasFinder,CRT	1458228-1458257	30	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	35853-35882	8	0.733
NZ_CP007193_2	2.6|1458097|30|NZ_CP007193|PILER-CR	1458097-1458126	30	MG676225	Aeromonas phage AhSzw-1, complete genome	109812-109841	8	0.733
NZ_CP007193_2	2.7|1458163|30|NZ_CP007193|PILER-CR	1458163-1458192	30	MG602477	Bacillus phage BCP01, complete genome	154164-154193	8	0.733
NZ_CP007193_2	2.7|1458163|30|NZ_CP007193|PILER-CR	1458163-1458192	30	KX495186	Bacillus phage PK16, complete genome	23957-23986	8	0.733
NZ_CP007193_2	2.8|1458229|30|NZ_CP007193|PILER-CR	1458229-1458258	30	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	25137-25166	8	0.733
NZ_CP007193_2	2.8|1458229|30|NZ_CP007193|PILER-CR	1458229-1458258	30	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	35853-35882	8	0.733
NZ_CP007193_1	1.1|1342332|34|NZ_CP007193|CRISPRCasFinder	1342332-1342365	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 2.1|1458096|30|NZ_CP007193|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatggcagtttttaaaagagcttggcggtt	CRISPR spacer
tatggcagtttttaaaagagcttggcggtt	Protospacer
******************************

2. spacer 2.2|1458162|30|NZ_CP007193|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tttccaaagtttcattagttgaatttaact	CRISPR spacer
tttccaaagtttcattagttgaatttaact	Protospacer
******************************

3. spacer 2.6|1458097|30|NZ_CP007193|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tatggcagtttttaaaagagcttggcggtt	CRISPR spacer
tatggcagtttttaaaagagcttggcggtt	Protospacer
******************************

4. spacer 2.7|1458163|30|NZ_CP007193|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

tttccaaagtttcattagttgaatttaact	CRISPR spacer
tttccaaagtttcattagttgaatttaact	Protospacer
******************************

5. spacer 2.5|1458360|31|NZ_CP007193|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

taagtgatatgttattaagatttaaaagtga	CRISPR spacer
taagcgatatgttattaagatttaaaagtga	Protospacer
****.**************************

6. spacer 2.10|1458361|31|NZ_CP007193|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

taagtgatatgttattaagatttaaaagtga	CRISPR spacer
taagcgatatgttattaagatttaaaagtga	Protospacer
****.**************************

7. spacer 2.3|1458228|30|NZ_CP007193|CRISPRCasFinder,CRT matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.933

aggggagatattgttatgagtattatgcag	CRISPR spacer
aggggtgatattgttatgagtattatgcaa	Protospacer
***** ***********************.

8. spacer 2.8|1458229|30|NZ_CP007193|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 2, identity: 0.933

aggggagatattgttatgagtattatgcag	CRISPR spacer
aggggtgatattgttatgagtattatgcaa	Protospacer
***** ***********************.

9. spacer 2.5|1458360|31|NZ_CP007193|CRISPRCasFinder,CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 7, identity: 0.774

taagtgatatgttattaagatttaaaagtga	CRISPR spacer
tatatgatatgttattaacatataaaagctt	Protospacer
** .************** ** ******.  

10. spacer 2.10|1458361|31|NZ_CP007193|PILER-CR matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 7, identity: 0.774

taagtgatatgttattaagatttaaaagtga	CRISPR spacer
tatatgatatgttattaacatataaaagctt	Protospacer
** .************** ** ******.  

11. spacer 2.1|1458096|30|NZ_CP007193|CRISPRCasFinder,CRT matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 8, identity: 0.733

tatggcagtttttaaaagagcttggcggtt	CRISPR spacer
gctgccagtttttaaaagagctttacaatg	Protospacer
  ** ****************** .*..* 

12. spacer 2.2|1458162|30|NZ_CP007193|CRISPRCasFinder,CRT matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********  

13. spacer 2.2|1458162|30|NZ_CP007193|CRISPRCasFinder,CRT matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********  

14. spacer 2.3|1458228|30|NZ_CP007193|CRISPRCasFinder,CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 8, identity: 0.733

aggggagatattgttatgagtattatgcag	CRISPR spacer
ctagtgtttattgttatgaggattatgcag	Protospacer
  .* .  ************ *********

15. spacer 2.3|1458228|30|NZ_CP007193|CRISPRCasFinder,CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 8, identity: 0.733

aggggagatattgttatgagtattatgcag	CRISPR spacer
ctagtgtttattgttatgaggattatgcag	Protospacer
  .* .  ************ *********

16. spacer 2.6|1458097|30|NZ_CP007193|PILER-CR matches to MG676225 (Aeromonas phage AhSzw-1, complete genome) position: , mismatch: 8, identity: 0.733

tatggcagtttttaaaagagcttggcggtt	CRISPR spacer
gctgccagtttttaaaagagctttacaatg	Protospacer
  ** ****************** .*..* 

17. spacer 2.7|1458163|30|NZ_CP007193|PILER-CR matches to MG602477 (Bacillus phage BCP01, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********  

18. spacer 2.7|1458163|30|NZ_CP007193|PILER-CR matches to KX495186 (Bacillus phage PK16, complete genome) position: , mismatch: 8, identity: 0.733

tttccaaagtttcattagttgaatttaact	CRISPR spacer
ataataaagtttcattagaagaatttaaaa	Protospacer
 *  .*************  ********  

19. spacer 2.8|1458229|30|NZ_CP007193|PILER-CR matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 8, identity: 0.733

aggggagatattgttatgagtattatgcag	CRISPR spacer
ctagtgtttattgttatgaggattatgcag	Protospacer
  .* .  ************ *********

20. spacer 2.8|1458229|30|NZ_CP007193|PILER-CR matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 8, identity: 0.733

aggggagatattgttatgagtattatgcag	CRISPR spacer
ctagtgtttattgttatgaggattatgcag	Protospacer
  .* .  ************ *********

21. spacer 1.1|1342332|34|NZ_CP007193|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **    

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1360968 : 1367604	8	Tupanvirus(16.67%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP007193|1360968:1367604|DBSCAN-SWA
TTCAATTATTGATTAGAAAATGATAATAATCCTCAGGCACACCAATATCTATAAAATAATCATCAAAAATACAAGCCCTAGCCTTTAGTTTTTTATAATTTTCTTGTAAAAACTCTTCAAAAGAAAATTTTTCCTGCAAAGCAAAATCATTAAAAATATCTTTAGTTAAAAGATAAATTCCACCATTGATTAAACCTTGCTTTTTAAATACCTTTTCCTCAAAAGAAATTACAAGATCTTGTTCATCAACATTTACTGTGCCGTATCTATCAAAATCATTCATTTGTTTTAAAGCAAGACAAATTTTACTTTCATTTAGCTTTAATTTACTTAAATCTATGTCAAAAAAAGTATCACCATTTAAAACATAAGCTTCATTTTTTACAAATTTCAAAGTCTCTTTTATGGCTCCGCCTGTTCCTAGAGGCTCTTTTTCGATGCTGTATTTTATTTTTATACCTAAAAACTCATCTTTAAAATACTCTTTTATCACTTCATATTTGTATGATACTGCTAAAATTACTTCTTTTATACCTTGCTTTTTAAGATACTCAAAAATAAATTCTAAAAAAGGCTTATCATTTATCGGTGCCATAGGCTTTGGAATGTCTTTTATAATACTTTTAAGTCTTGTTCCTAAGCCGCCACAAAGTATTATTGCTTGCAAGAAAAACCTTTACCAAAAAGCTCTTCTTCGACAATAGCACAAATAATATGTCCTATTAAAATATGCGCTTCTTGAATTCTTGGCGTGCAAGTTGAAGGCACTTTTATACAATAATCACAAAGTTCATTCATAGCCCCGCCACTAGCTCCACTTAAGCCTATACTTATGATTTCTTTTTGTTTGCAAAACTCTAAAGCTTTTAAGATATTTTTACTATTTCCACTTGTTGAAATGCCTATAAAAACATCTCCCTTAACACCTTGAGCTTGCACTTGTCTAGCAAACAAATTTTCATAACCATAGTCATTACCAATAGCTGTTAATATGCTAGTATCTGTAGTAAGTGCAATACTTGCGATACCGGGTCTATCAAAATAAAACCTACTTACAAATTCCCCTGCAATATGCTGTGCATCTGCAGCACTGCCACCATTTCCTGCTAATAAAGTTTTGTTACCATTTTTATAAGCTTTTATGACTTCTAATGAAGCATTTTTAATAAGAGTTATCAAATTCTCATCTTTTAAAATTTGTTCTTTTACTAAAATAGAATCTGCAAAATGTCCTTTTATATAGGAATTTAAATTCTCCATGATTTAACCCCCTCTTTTGTAAATGAAAAATCTTGCACATAACCTTGCTCTTTTCTTAAAGCTTTGATTAAGTTGTATTTTTTAGTAGGATCTACGAAGAAAAACATAAATCCACCAGCTCCTGCTCCGCTGGTTTTGCCACTATAGGCTCCGTTATCTATAGCAAGTTTATAAATTCTTTCAAGCTCATCATTACTAACGATTTCTGAAATGATTTTTTTTGACCGCCAAGATTTTCCTAAAATTTGCGCCAAAGTACCAAAATCGGCTCTAAATAAAGCTTCTTTCATCTTTATAGCATCTTGTTTTATCGCGTGCATGGCTTCTAAAGATTTTTCATCTCCAAGCTTTCCTTTTTTATGCTCTTCTATATCTTTTGCTTCTCTTGTGATATTTGTAAAATAAAGCACAGTTCTAGCTTCAAGCTCACTAGCTATCCAGTTTTTAATACGCAAAGGATTAACAATGACTCTTTTATTGTTATAAAATTCCATAAAATTAAAACCACCAAAAGTTGCGGCGTATTGATCTTGTGCTCCACCTACTATGCCTAAATCTTCTCTTTCTATCTCGTAAGCAAGTTTAGCGATTTCATATTCTCCTAAAGGTAGATTAAGCCATTCTGCAAAGGCTTTTATAACCCCTACAACCAAAGTTGAGCTTCCGCCCAAGCCACTACCACTTGGTACATCCGAATAGGTATGCAAAGAAAAACTCAAAGGTTTTTTTGTAAAATCTTTTACAATGCGATTATAAATACTTTTAAAAATATCTAATTTTCCATCATTTCCTAAGAATTCTTTACTTTCGTACTCACAGTAAGAATTTGTATCAGGAGAATCAAAAATGATTTTTCCATCTTCTCTTTTGATCAAAGTACAATGTATGTATAAAGATATAGTCGCATTTAAAACATAACCTGTATATTTATCACAATATAAATTTATATCAGTCCCACCACCTGCTAGACCGAGACGAAGAGGAGTTTGTGTGCGTATGGTTTTCATAAATCTCCTAATTTATTTATCATATCCAATCAAGTAAAATATTTTGAATATTACATTTATTAATCAATTGCTTTAACTCCCCTATCTTTTTCTCTGAATCATCAAACATATATTCATGTGTTTCACAAGCAATATAATCAATTTTTTTATATATTTTTTTTTCAATAATTTTTTTCATTATCTCAAACTCCATTCCTTCAATATCAAGTTTTAGAAAATAAATCCTTTTATGTTGTGTTAAAATTTCATTTTCGATAAACTCGCATAAATCAATTACTTGAACTTTATATGTTTTTTCCGTCTGACTGTCTTGTACACTTTCAACTATACGATTGCCTTGAGATAGTATCCTATTTCCAAACATAATAAAATCTGTTTCATAATTTCTGTCCGATACTGCTTTTTGAAAAAGTTTTACATTTATATTATTTTCATATTTTTTTCTTAAAAAATAATTTAAATAAATATTTGGCTCAAAGATATAACTTTGCCCGCCACAATGTAAAATAATATCAGTAATTAAGCCTGCATGTCCACCACAATCAATACATACTGGACGATATCCATCCCCCCCCCCCATATTTATCGACATAAAGCATCTTGTAAAAAATATCATAATATTGTTTTGGAATTCTGGCATTATCTAATAACAAATTTAATCTACCAAGCCCTTGTGGATCGGCTATAGCACCCTGAATTAAATGCAATGCATTATAAACATTTTCTTGCTTATTCCAATGGTTTAATACTTGCAACTCTGAAATTATCCTTTCTACATCAGCTATTGGTTTCCTAGCTTGCTGATGATTATCAATTTGATAAATCAAGCCATTTAGAGCCTCTTTTAATACTTCCAATTGTTCTTTTTTCATTATTTATCTCCTTTAATTTTAATTAAAATTTGCAAAGCGATTAACTTTCATCATTTTAAACGCTCTTAAAAGCTCTTTAATACCATCTTCTAAAGTATTATCTGGTTTCCAACCTGTAGCCTCTAATTTAGTATTTGAAACCAAATAATCTCTTTTATCTGGATCTTCACCTATGTTGGCTGAATGGATATAAAAATCAGGAATATACTTTTTAATTGTTTCAGCAAGCTGTCTTTTGGTCAAATTTGCAGAACTTAATCCCATGTTATAAGCCTGACCCTTCATCTTATCATAATTCTCAATTCCATGAATAAATCCTTTAACCACATCGCGAACATGAATATAATTGCGTCTAAAATGCTCTTCAAAAAGCACTATAAATTTATCTCTATATGCACGATAAGTAAAATCATTAACAAGTAAATCAAGTCTCATTCTAGGTGAAATTCCAAAAACAGTAGCTAAACGAAAAGTCACACAATTTCCTTTATCGAGCAAATATTGCTCCGCATGCACTTTATCGATCCCATATTCTGAGATAGGACGCAAGGGAGATTCTTCAGTACACATTGCATCTTTTTCTCCTATACCATAACCGCTGTTTGTATTGGGATAAATAAATATTTGAGAAGGACTTGCAAAATCACTTATCATTTTTACGGCTTCATAATTGATCATTTTAGCTAATTTTGGATTTCTTTTACAAAGTGGAGCTCCAACTAAAGCAGCTAGAGGAATAATAATATCAGCTTTTGCTACCTCTTGCCTAATAAGATTTTCATCCATAGCATCACCATTTATAAAAGTAAAATTTTTATTATGAAAACAAGATAAAAGAGAAATTTGATCAAACATCAAATTATCAATCACACAAACTTCATAACCTTTTTCAAGTAAAATCGGCGTTAAAACCGAACCTATATAACCTGCACCACCTGTAATTAAAACTTTTTTTGACATACTTTTCCTTTCGTCTTTGAAAATCAATTTTGTGTTTTATACCATTCATACATCATTTTAATACCATCTTTAAGTTCAATTTTATGCTTCCAACCTAAAGAATGAATTTTTGAGCAATCCATAAGTCTATCCATTGTGCTATCCGGTCTAGAAGTATTGAAAACTAGTTCTCCGCTAAACCCAACTATATTTTTTACCATCAAAGCAACTTCTTTGATTGAATAGTCAATACCTGTCCCTATATTAATATGGGTATTTTTACTTTTTCTATCTTTAATAAGATCTTTAAAATCAATATTTTGCATCGTATAGATAGCTACATCGGCTAGATCGTCACTATGAATAAATTCTCTCCTAACTTTTCCAGTGCCCCAAATTTCTACACTTTTTTTACTAATTCCAAAATTATGCAAATATTCTTTTGCTTCTTCAAAATTATTCATTTTCAAATCTTGAAGGATTTGAGTTATATTACCCTCGCTTAACAATTTTGCTAAATGAAATTTTCTAAGCAATGCGGGTAAGACTCTTGATTTTCCAAAATCAAAATTTGCTTTAGTTCCGTAAAGATTATTTAAAACAAGAGTAATGAAATTAGTACCATATTGAATATTATAACTTTCACACATTATAGCTCCAGCTATTTTGGCTGCACCAAAAGAATAAGCGCCATATTCTAAATCACCTTGAAATAAATATTCCTCTTTCAATGGGTTTTTAGCATTCTCAGGATACATATACCCAGAACCAAAAAATACCAATTTTTTAACATTATTAAGAAATGAATTGTGAATAACATTGTTTTGAATCATCAAATTTTCATAAATAAAATCAGCCCTTTGAGCGACATTTGCAGCACCACAAGGTAAGACTGCAGTCAAAAAAACATATTCTGGCTTTTCTTCTTTAAAAAATTTAGCAACCGCTTGCTGATTAACCAAATCAAGCTCTTGCCTTGTTTTTAAAACAAGATTATTAAATCCTCTTTTTTGTAAGTTTTCTACCAATGCTGTACCTGCGGTTCCTTTGTGCCCCGCTATATATATTTTTGAATTTGTTTGCATCAATAACCTCTAAATCGTATTGGAATTTCTGGATTTGAAATCCAAGGAAAATCTAAATTTTTAAATCCCCCTGCGACATCTCTATATTTCATAATATCAAGATTAATCAAATTTTTTCTTAAATAACTAACCTCCAAAGTGGTACTAAAAAATAATCCTTGAGAATAAAAAATTTTCCCATGGTTGTGAAAATGTGTATGCATTGGAACAAAATATTCATTAAGTTTTTTTAGCAAACTTATTCTTTTTTCCACCCCATCTTGCTCCTCAGGATTGCACCCATGAAATTCAAATATAACTTGTGAGAAATATTTATTTAAAATACTTATATCAATATTTTCAAGCATATCCCATTCGCAATTTTCAATATCACATTGCAAAATATTTGGCTTGTTCTCATCTAAATTATTATCTTTTAAAGCTTGTACCAAAGTAATTGTATTCTCATTATTTACATTACCTATAAATTTTTTATGAAAAACAATATTTTCATGGTCATAAGGACATTTTTCTATACTAGCATCATATTCTATCACCTTAAATCCCCTCTGAGCCATTTCTAAATCCCAAGGAGAACTATCCGAAACACCCAAAGAAAGAGCTTTTGCATTAATATCACTCATATCCCCCCCCCATTATACATCACATAACCACCATCTCCATTACCACCTATTCTTAACAAATCACACAAAGGCAATTCCAAAGGTCGAATGAGATTTAAATAATTTATAATATTTTGATAACATTGTTCATTATTATTTATACGAATATAATTTCTATCTCTTGCTTGTAATAATAAAAGTAAAATTTCTTTATCTTTTTTATCAATATCTAAATTCGAAATAATATTTGACATTAAGATTTGATAGGACAATTGATTGCTAAGTTTAATATTATTATTTAATTCTTTTAATAATTTTTCCATAATTTATCCTTTATTTTTAGTTGCAAGAATATCGCGATCGGAAAGAATAGGCGTATTTGTTGGCCAATCTATACCAATTCTTTCATCATTCCATGCATAAGTAAATTGATCAGGTGCATCCATATATTCCCCCTCATAAGCAAGTTTATAATAATACACTGCTTCCTTTGAACTCACATAATGAGAATTTCCCATATTTGGTGGTAATAAAATAAGTTGCTGATTTTTATAACTTATAATAAATTTCTCCCATTTTAAATAAGTTGGGGAATCTTTTCTGCAATCAACCACAACTTGATGCACTTCTCCATAGACACAAGTTACAAGTTTGTAAGTTTTCACATCTCCGTGTATTCCACGTAAAACATTAAAATGGGAATTTATAAATTTGTCATGCTTAAATTTAATTCCATCTGGAACCAACTTGCTTAAATATTCATCTGTAAAAGCTGTCCAAATTTCACCTCTTAAATCTCTAAATTTATTAGGAGTTATAATATACACTCCTTTTAAAATTTTTGATTCTTGTATATCAAATTCTATTGCCAT

Protein sequences of DBSCAN-SWA_1

>NZ_CP007193|1360968:1367604|1362214_1363234_-|WP_002858413.1|DBSCAN-SWA
MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCTLIKREDGKIIFDSPDTNSYCEYESKEFLGNDGKLDIFKSIYNRIVKDFTKKPLSFSLHTYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQDQYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKKGKLGDEKSLEAMHAIKQDAIKMKEALFRADFGTLAQILGKSWRSKKIISEIVSNDELERIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALRKEQGYVQDFSFTKEGVKSWRI
>NZ_CP007193|1360968:1367604|1361621_1362227_-|WP_002857991.1|DBSCAN-SWA
MENLNSYIKGHFADSILVKEQILKDENLITLIKNASLEVIKAYKNGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYENLFARQVQAQGVKGDVFIGISTSGNSKNILKALEFCKQKEIISIGLSGASGGAMNELCDYCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ
>NZ_CP007193|1360968:1367604|1364124_1365066_-|WP_002858299.1|DBSCAN-SWA
MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLSCFHNKNFTFINGDAMDENLIRQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVKMISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGNCVTFRLATVFGISPRMRLDLLVNDFTYRAYRDKFIVLFEEHFRRNYIHVRDVVKGFIHGIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYIPDFYIHSANIGEDPDKRDYLVSNTKLEATGWKPDNTLEDGIKELLRAFKMMKVNRFANFN
>NZ_CP007193|1360968:1367604|1360968_1361634_-|WP_002857908.1|DBSCAN-SWA
MQAIILCGGLGTRLKSIIKDIPKPMAPINDKPFLEFIFEYLKKQGIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKETLKFVKNEAYVLNGDTFFDIDLSKLKLNESKICLALKQMNDFDRYGTVNVDEQDLVISFEEKVFKKQGLINGGIYLLTKDIFNDFALQEKFSFEEFLQENYKKLKARACIFDDYFIDIGVPEDYYHFLINN
>NZ_CP007193|1360968:1367604|1366129_1366753_-|WP_002858231.1|DBSCAN-SWA
MSDINAKALSLGVSDSSPWDLEMAQRGFKVIEYDASIEKCPYDHENIVFHKKFIGNVNNENTITLVQALKDNNLDENKPNILQCDIENCEWDMLENIDISILNKYFSQVIFEFHGCNPEEQDGVEKRISLLKKLNEYFVPMHTHFHNHGKIFYSQGLFFSTTLEVSYLRKNLINLDIMKYRDVAGGFKNLDFPWISNPEIPIRFRGY
>NZ_CP007193|1360968:1367604|1366749_1367055_-|WP_002858116.1|DBSCAN-SWA
MEKLLKELNNNIKLSNQLSYQILMSNIISNLDIDKKDKEILLLLLQARDRNYIRINNNEQCYQNIINYLNLIRPLELPLCDLLRIGGNGDGGYVMYNGGGI
>NZ_CP007193|1360968:1367604|1367058_1367604_-|WP_002858190.1|DBSCAN-SWA
MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTDEYLSKLVPDGIKFKHDKFINSHFNVLRGIHGDVKTYKLVTCVYGEVHQVVVDCRKDSPTYLKWEKFIISYKNQQLILLPPNMGNSHYVSSKEAVYYYKLAYEGEYMDAPDQFTYAWNDERIGIDWPTNTPILSDRDILATKNKG
>NZ_CP007193|1360968:1367604|1365089_1366130_-|WP_002864205.1|DBSCAN-SWA
MQTNSKIYIAGHKGTAGTALVENLQKRGFNNLVLKTRQELDLVNQQAVAKFFKEEKPEYVFLTAVLPCGAANVAQRADFIYENLMIQNNVIHNSFLNNVKKLVFFGSGYMYPENAKNPLKEEYLFQGDLEYGAYSFGAAKIAGAIMCESYNIQYGTNFITLVLNNLYGTKANFDFGKSRVLPALLRKFHLAKLLSEGNITQILQDLKMNNFEEAKEYLHNFGISKKSVEIWGTGKVRREFIHSDDLADVAIYTMQNIDFKDLIKDRKSKNTHINIGTGIDYSIKEVALMVKNIVGFSGELVFNTSRPDSTMDRLMDCSKIHSLGWKHKIELKDGIKMMYEWYKTQN

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002857908.1|1360968_1361634_-	D-glycero-D-manno-heptose 1-phosphate guanosyltransferase	A0A2K9L821	Tupanvirus	4.1e-08	26.6
WP_002857991.1|1361621_1362227_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	2.2e-16	35.0
WP_002858413.1|1362214_1363234_-	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	2.7e-59	40.7
WP_002858299.1|1364124_1365066_-	NAD-dependent epimerase/dehydratase	A0A0F7LC08	uncultured_marine_virus	1.0e-73	46.1
WP_002864205.1|1365089_1366130_-	GDP-L-fucose synthase	M1HWW2	Paramecium_bursaria_Chlorella_virus	1.7e-69	44.4
WP_002858231.1|1366129_1366753_-	hypothetical protein	NA	NA	NA	NA
WP_002858116.1|1366749_1367055_-	hypothetical protein	NA	NA	NA	NA
WP_002858190.1|1367058_1367604_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A1D8EQH2	Escherichia_phage	6.1e-18	32.4