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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP015385 Klebsiella pneumoniae strain NY9 chromosome, complete genome 1 crisprs csa3,cas3,DEDDh,DinG,RT,WYL 0 0 12 0
NZ_CP015388 Klebsiella pneumoniae strain NY9 plasmid pNY9_3, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP015387 Klebsiella pneumoniae strain NY9 plasmid pNY9_2, complete sequence 0 crisprs NA 0 0 3 0
NZ_CP015391 Klebsiella pneumoniae strain NY9 plasmid pNY9_6, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP015389 Klebsiella pneumoniae strain NY9 plasmid pNY9_4, complete sequence 0 crisprs RT 0 0 0 0
NZ_CP015386 Klebsiella pneumoniae strain NY9 plasmid pNY9_1, complete sequence 0 crisprs csa3,cas3,RT 0 0 2 0
NZ_CP015390 Klebsiella pneumoniae strain NY9 plasmid pNY9_5, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP015385
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP015385_1 4502838-4502932 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 446798 : 480056 34 uncultured_Caudovirales_phage(75.0%) terminase,protease,capsid,portal,tRNA,tail,integrase,head attL 464406:464423|attR 480401:480418
DBSCAN-SWA_2 1241529 : 1290030 64 Salmonella_phage(82.22%) terminase,lysis,plate,capsid,portal,coat,tRNA,tail,transposase,integrase,head attL 1239823:1239869|attR 1278656:1278702
DBSCAN-SWA_3 1388343 : 1442255 61 Salmonella_phage(40.43%) terminase,tRNA,tail,transposase,holin,integrase attL 1381155:1381171|attR 1433875:1433891
DBSCAN-SWA_4 1770975 : 1777880 6 Planktothrix_phage(33.33%) tRNA NA
DBSCAN-SWA_5 1818705 : 1830986 11 Enterobacteria_phage(22.22%) NA NA
DBSCAN-SWA_6 2027840 : 2077749 52 Microcystis_virus(21.43%) plate,protease,transposase NA
DBSCAN-SWA_7 2761021 : 2770435 9 Escherichia_phage(87.5%) NA NA
DBSCAN-SWA_8 2935697 : 2965130 32 Salmonella_phage(29.17%) tRNA NA
DBSCAN-SWA_9 2987182 : 3081517 107 uncultured_Caudovirales_phage(26.67%) integrase,terminase,plate,transposase attL 3072630:3072644|attR 3078639:3078653
DBSCAN-SWA_10 3493380 : 3586331 97 Salmonella_phage(57.63%) terminase,lysis,plate,protease,capsid,portal,tRNA,tail,integrase,head attL 3548906:3548924|attR 3586406:3586424
DBSCAN-SWA_11 4239541 : 4251195 15 Enterobacteria_phage(70.0%) integrase attL 4239393:4239406|attR 4243606:4243619
DBSCAN-SWA_12 4719441 : 4725266 8 Enterobacteria_phage(100.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP015386
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1727 : 60898 54 uncultured_Caudovirales_phage(27.78%) protease,transposase,integrase NA
DBSCAN-SWA_2 66385 : 134609 59 Escherichia_phage(31.58%) integrase,transposase,bacteriocin attL 99608:99625|attR 137744:137761
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP015388
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1796 : 53242 50 Escherichia_phage(27.78%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP015387
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 48 : 19164 26 Stx2-converting_phage(20.0%) transposase NA
DBSCAN-SWA_2 69356 : 108735 46 Escherichia_phage(16.67%) transposase NA
DBSCAN-SWA_3 128964 : 135454 7 Burkholderia_phage(33.33%) integrase,transposase attL 126393:126452|attR 134860:135517
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage