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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019238 Rhodoferax koreense strain DCY-110 plasmid unnamed2 0 crisprs NA 0 0 0 0
NZ_CP019236 Rhodoferax koreense strain DCY-110 chromosome, complete genome 5 crisprs WYL,csa3,RT,DEDDh,DinG,cas3 0 1 9 0
NZ_CP019237 Rhodoferax koreense strain DCY-110 plasmid unnamed1 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP019236
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019236_1 3558929-3559027 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019236_2 3881846-3881966 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019236_3 4152375-4152478 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019236_4 4943776-4943884 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019236_5 5231386-5231490 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019236_3 3.1|4152403|48|NZ_CP019236|CRISPRCasFinder 4152403-4152450 48 NZ_CP020539 Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence 818576-818623 13 0.729

1. spacer 3.1|4152403|48|NZ_CP019236|CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 13, identity: 0.729

ggaacaaatacccccgttcgtgctgagcctgtcgaagcatctgcacca	CRISPR spacer
cctacaactacccccgttcgtcctgagcctgtcgaaggacgcacatgg	Protospacer
   **** ************* *************** *. ..**. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 232127 : 264408 29 uncultured_virus(50.0%) integrase,transposase attL 219337:219352|attR 272792:272807
DBSCAN-SWA_2 895903 : 906119 7 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_3 1605921 : 1616015 9 Escherichia_phage(16.67%) tRNA NA
DBSCAN-SWA_4 2256811 : 2264221 9 Vibrio_phage(16.67%) NA NA
DBSCAN-SWA_5 2319672 : 2329289 12 uncultured_phage(33.33%) NA NA
DBSCAN-SWA_6 3115979 : 3171067 51 Planktothrix_phage(22.22%) coat,plate,tRNA NA
DBSCAN-SWA_7 3408885 : 3422185 17 Pseudomonas_virus(22.22%) integrase attL 3417169:3417184|attR 3432198:3432213
DBSCAN-SWA_8 3998462 : 4016657 20 Pseudomonas_phage(41.67%) integrase,plate,tRNA,tail attL 3994810:3994827|attR 4010643:4010660
DBSCAN-SWA_9 4021918 : 4033032 12 Burkholderia_phage(33.33%) terminase,portal,tail,head,capsid,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage