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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019304 Arthrobacter sp. QXT-31 chromosome, complete genome 3 crisprs csa3,DinG,cas3,DEDDh,WYL 0 6 1 0

Results visualization

1. NZ_CP019304
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019304_1 619457-619554 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019304_2 3792776-3792938 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019304_3 4855752-4856528 Orphan NA
14 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019304_3 3.11|4856313|33|NZ_CP019304|CRT 4856313-4856345 33 NZ_CP039693 Agrobacterium larrymoorei strain CFBP5473 plasmid pAlCFBP5473, complete sequence 123895-123927 6 0.818
NZ_CP019304_3 3.11|4856313|33|NZ_CP019304|CRT 4856313-4856345 33 NZ_CP024314 Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence 1985958-1985990 6 0.818
NZ_CP019304_3 3.5|4855989|33|NZ_CP019304|CRT 4855989-4856021 33 MH976511 Gordonia phage Gaea, complete genome 17015-17047 7 0.788
NZ_CP019304_3 3.5|4855989|33|NZ_CP019304|CRT 4855989-4856021 33 MT723937 Gordonia phage JKSyngboy, complete genome 17773-17805 7 0.788
NZ_CP019304_3 3.5|4855989|33|NZ_CP019304|CRT 4855989-4856021 33 MH450129 Gordonia phage Ribeye, complete genome 18335-18367 7 0.788
NZ_CP019304_3 3.5|4855989|33|NZ_CP019304|CRT 4855989-4856021 33 MT723941 Gordonia phage YorkOnyx, complete genome 17398-17430 7 0.788
NZ_CP019304_3 3.5|4855989|33|NZ_CP019304|CRT 4855989-4856021 33 MH976509 Gordonia phage Bizzy, complete genome 17308-17340 7 0.788
NZ_CP019304_3 3.5|4855989|33|NZ_CP019304|CRT 4855989-4856021 33 MH651168 Gordonia phage Ashertheman, complete genome 17407-17439 7 0.788
NZ_CP019304_3 3.5|4855989|33|NZ_CP019304|CRT 4855989-4856021 33 MH976513 Gordonia phage Kroos, complete genome 17872-17904 7 0.788
NZ_CP019304_3 3.5|4855989|33|NZ_CP019304|CRT 4855989-4856021 33 MK967396 Gordonia phage Tangerine, complete genome 17000-17032 7 0.788
NZ_CP019304_3 3.6|4856043|33|NZ_CP019304|CRT 4856043-4856075 33 MH976511 Gordonia phage Gaea, complete genome 17015-17047 7 0.788
NZ_CP019304_3 3.6|4856043|33|NZ_CP019304|CRT 4856043-4856075 33 MT723937 Gordonia phage JKSyngboy, complete genome 17773-17805 7 0.788
NZ_CP019304_3 3.6|4856043|33|NZ_CP019304|CRT 4856043-4856075 33 MH450129 Gordonia phage Ribeye, complete genome 18335-18367 7 0.788
NZ_CP019304_3 3.6|4856043|33|NZ_CP019304|CRT 4856043-4856075 33 MT723941 Gordonia phage YorkOnyx, complete genome 17398-17430 7 0.788
NZ_CP019304_3 3.6|4856043|33|NZ_CP019304|CRT 4856043-4856075 33 MH976509 Gordonia phage Bizzy, complete genome 17308-17340 7 0.788
NZ_CP019304_3 3.6|4856043|33|NZ_CP019304|CRT 4856043-4856075 33 MH651168 Gordonia phage Ashertheman, complete genome 17407-17439 7 0.788
NZ_CP019304_3 3.6|4856043|33|NZ_CP019304|CRT 4856043-4856075 33 MH976513 Gordonia phage Kroos, complete genome 17872-17904 7 0.788
NZ_CP019304_3 3.6|4856043|33|NZ_CP019304|CRT 4856043-4856075 33 MK967396 Gordonia phage Tangerine, complete genome 17000-17032 7 0.788
NZ_CP019304_3 3.9|4856205|33|NZ_CP019304|CRT 4856205-4856237 33 NZ_CP010683 Phaeobacter piscinae strain P14 plasmid pP14_b, complete sequence 3834-3866 7 0.788
NZ_CP019304_3 3.9|4856205|33|NZ_CP019304|CRT 4856205-4856237 33 NZ_CP010718 Phaeobacter piscinae strain P18 plasmid pP18_c, complete sequence 3834-3866 7 0.788
NZ_CP019304_3 3.4|4855935|33|NZ_CP019304|CRT 4855935-4855967 33 MH976511 Gordonia phage Gaea, complete genome 17015-17047 8 0.758
NZ_CP019304_3 3.4|4855935|33|NZ_CP019304|CRT 4855935-4855967 33 MT723937 Gordonia phage JKSyngboy, complete genome 17773-17805 8 0.758
NZ_CP019304_3 3.4|4855935|33|NZ_CP019304|CRT 4855935-4855967 33 MT723941 Gordonia phage YorkOnyx, complete genome 17398-17430 8 0.758
NZ_CP019304_3 3.8|4856151|33|NZ_CP019304|CRT 4856151-4856183 33 MH976511 Gordonia phage Gaea, complete genome 17015-17047 8 0.758
NZ_CP019304_3 3.8|4856151|33|NZ_CP019304|CRT 4856151-4856183 33 MT723937 Gordonia phage JKSyngboy, complete genome 17773-17805 8 0.758
NZ_CP019304_3 3.8|4856151|33|NZ_CP019304|CRT 4856151-4856183 33 MT723941 Gordonia phage YorkOnyx, complete genome 17398-17430 8 0.758
NZ_CP019304_3 3.9|4856205|33|NZ_CP019304|CRT 4856205-4856237 33 NZ_CP030772 Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence 679884-679916 8 0.758
NZ_CP019304_3 3.4|4855935|33|NZ_CP019304|CRT 4855935-4855967 33 MH450129 Gordonia phage Ribeye, complete genome 18335-18367 10 0.697
NZ_CP019304_3 3.4|4855935|33|NZ_CP019304|CRT 4855935-4855967 33 MH976509 Gordonia phage Bizzy, complete genome 17308-17340 10 0.697
NZ_CP019304_3 3.4|4855935|33|NZ_CP019304|CRT 4855935-4855967 33 MH651168 Gordonia phage Ashertheman, complete genome 17407-17439 10 0.697
NZ_CP019304_3 3.4|4855935|33|NZ_CP019304|CRT 4855935-4855967 33 MH976513 Gordonia phage Kroos, complete genome 17872-17904 10 0.697
NZ_CP019304_3 3.4|4855935|33|NZ_CP019304|CRT 4855935-4855967 33 MK967396 Gordonia phage Tangerine, complete genome 17000-17032 10 0.697
NZ_CP019304_3 3.8|4856151|33|NZ_CP019304|CRT 4856151-4856183 33 MH450129 Gordonia phage Ribeye, complete genome 18335-18367 10 0.697
NZ_CP019304_3 3.8|4856151|33|NZ_CP019304|CRT 4856151-4856183 33 MH976509 Gordonia phage Bizzy, complete genome 17308-17340 10 0.697
NZ_CP019304_3 3.8|4856151|33|NZ_CP019304|CRT 4856151-4856183 33 MH651168 Gordonia phage Ashertheman, complete genome 17407-17439 10 0.697
NZ_CP019304_3 3.8|4856151|33|NZ_CP019304|CRT 4856151-4856183 33 MH976513 Gordonia phage Kroos, complete genome 17872-17904 10 0.697
NZ_CP019304_3 3.8|4856151|33|NZ_CP019304|CRT 4856151-4856183 33 MK967396 Gordonia phage Tangerine, complete genome 17000-17032 10 0.697

1. spacer 3.11|4856313|33|NZ_CP019304|CRT matches to NZ_CP039693 (Agrobacterium larrymoorei strain CFBP5473 plasmid pAlCFBP5473, complete sequence) position: , mismatch: 6, identity: 0.818

accgtccaggcaggggtcgccatgc---cgaacgga	CRISPR spacer
gccgtcaaggcaggcgtcgccatgctgtcgaac---	Protospacer
.***** ******* **********   *****   

2. spacer 3.11|4856313|33|NZ_CP019304|CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 6, identity: 0.818

accgtccaggcaggggtcgccatgc---cgaacgga	CRISPR spacer
gccgtcaaggcaggcgtcgccatgctgtcgaac---	Protospacer
.***** ******* **********   *****   

3. spacer 3.5|4855989|33|NZ_CP019304|CRT matches to MH976511 (Gordonia phage Gaea, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .** 

4. spacer 3.5|4855989|33|NZ_CP019304|CRT matches to MT723937 (Gordonia phage JKSyngboy, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .** 

5. spacer 3.5|4855989|33|NZ_CP019304|CRT matches to MH450129 (Gordonia phage Ribeye, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcgtacg	Protospacer
 **** ************** *** *.**  ** 

6. spacer 3.5|4855989|33|NZ_CP019304|CRT matches to MT723941 (Gordonia phage YorkOnyx, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .** 

7. spacer 3.5|4855989|33|NZ_CP019304|CRT matches to MH976509 (Gordonia phage Bizzy, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcgtacg	Protospacer
 **** ************** *** *.**  ** 

8. spacer 3.5|4855989|33|NZ_CP019304|CRT matches to MH651168 (Gordonia phage Ashertheman, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcgtacg	Protospacer
 **** ************** *** *.**  ** 

9. spacer 3.5|4855989|33|NZ_CP019304|CRT matches to MH976513 (Gordonia phage Kroos, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcgtacg	Protospacer
 **** ************** *** *.**  ** 

10. spacer 3.5|4855989|33|NZ_CP019304|CRT matches to MK967396 (Gordonia phage Tangerine, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcgtacg	Protospacer
 **** ************** *** *.**  ** 

11. spacer 3.6|4856043|33|NZ_CP019304|CRT matches to MH976511 (Gordonia phage Gaea, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .** 

12. spacer 3.6|4856043|33|NZ_CP019304|CRT matches to MT723937 (Gordonia phage JKSyngboy, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .** 

13. spacer 3.6|4856043|33|NZ_CP019304|CRT matches to MH450129 (Gordonia phage Ribeye, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcgtacg	Protospacer
 **** ************** *** *.**  ** 

14. spacer 3.6|4856043|33|NZ_CP019304|CRT matches to MT723941 (Gordonia phage YorkOnyx, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .** 

15. spacer 3.6|4856043|33|NZ_CP019304|CRT matches to MH976509 (Gordonia phage Bizzy, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcgtacg	Protospacer
 **** ************** *** *.**  ** 

16. spacer 3.6|4856043|33|NZ_CP019304|CRT matches to MH651168 (Gordonia phage Ashertheman, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcgtacg	Protospacer
 **** ************** *** *.**  ** 

17. spacer 3.6|4856043|33|NZ_CP019304|CRT matches to MH976513 (Gordonia phage Kroos, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcgtacg	Protospacer
 **** ************** *** *.**  ** 

18. spacer 3.6|4856043|33|NZ_CP019304|CRT matches to MK967396 (Gordonia phage Tangerine, complete genome) position: , mismatch: 7, identity: 0.788

gtcgtccaggccgacgggactatgcccgccaac-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcgtacg	Protospacer
 **** ************** *** *.**  ** 

19. spacer 3.9|4856205|33|NZ_CP019304|CRT matches to NZ_CP010683 (Phaeobacter piscinae strain P14 plasmid pP14_b, complete sequence) position: , mismatch: 7, identity: 0.788

accgcccaggcaggggtcgccatgccgaacgga	CRISPR spacer
cgcgcccaggcagcggtcgccatggcgcgctga	Protospacer
  *********** ********** ** .* **

20. spacer 3.9|4856205|33|NZ_CP019304|CRT matches to NZ_CP010718 (Phaeobacter piscinae strain P18 plasmid pP18_c, complete sequence) position: , mismatch: 7, identity: 0.788

accgcccaggcaggggtcgccatgccgaacgga	CRISPR spacer
cgcgcccaggcagcggtcgccatggcgcgctga	Protospacer
  *********** ********** ** .* **

21. spacer 3.4|4855935|33|NZ_CP019304|CRT matches to MH976511 (Gordonia phage Gaea, complete genome) position: , mismatch: 8, identity: 0.758

gtcgtccaggccgacgggactatgcccgccaat-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .*. 

22. spacer 3.4|4855935|33|NZ_CP019304|CRT matches to MT723937 (Gordonia phage JKSyngboy, complete genome) position: , mismatch: 8, identity: 0.758

gtcgtccaggccgacgggactatgcccgccaat-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .*. 

23. spacer 3.4|4855935|33|NZ_CP019304|CRT matches to MT723941 (Gordonia phage YorkOnyx, complete genome) position: , mismatch: 8, identity: 0.758

gtcgtccaggccgacgggactatgcccgccaat-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .*. 

24. spacer 3.8|4856151|33|NZ_CP019304|CRT matches to MH976511 (Gordonia phage Gaea, complete genome) position: , mismatch: 8, identity: 0.758

gtcgtccaggccgacgggactatgcccgccaat-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .*. 

25. spacer 3.8|4856151|33|NZ_CP019304|CRT matches to MT723937 (Gordonia phage JKSyngboy, complete genome) position: , mismatch: 8, identity: 0.758

gtcgtccaggccgacgggactatgcccgccaat-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .*. 

26. spacer 3.8|4856151|33|NZ_CP019304|CRT matches to MT723941 (Gordonia phage YorkOnyx, complete genome) position: , mismatch: 8, identity: 0.758

gtcgtccaggccgacgggactatgcccgccaat-	CRISPR spacer
ctcgtgcaggccgacgggacgatg-ctgcggacg	Protospacer
 **** ************** *** *.** .*. 

27. spacer 3.9|4856205|33|NZ_CP019304|CRT matches to NZ_CP030772 (Streptomyces sp. YIM 121038 plasmid pSSP121038, complete sequence) position: , mismatch: 8, identity: 0.758

accgcccaggcaggggtcgccat-gccgaacgga	CRISPR spacer
accgccctggccggggtcgccatggtccggcgc-	Protospacer
******* *** *********** *.* ..**  

28. spacer 3.4|4855935|33|NZ_CP019304|CRT matches to MH450129 (Gordonia phage Ribeye, complete genome) position: , mismatch: 10, identity: 0.697

gtcgtccaggccgacgggactatgcccgccaat	CRISPR spacer
ctcgtgcaggccgacgggacgatgctgcgtacg	Protospacer
 **** ************** ****.   .*  

29. spacer 3.4|4855935|33|NZ_CP019304|CRT matches to MH976509 (Gordonia phage Bizzy, complete genome) position: , mismatch: 10, identity: 0.697

gtcgtccaggccgacgggactatgcccgccaat	CRISPR spacer
ctcgtgcaggccgacgggacgatgctgcgtacg	Protospacer
 **** ************** ****.   .*  

30. spacer 3.4|4855935|33|NZ_CP019304|CRT matches to MH651168 (Gordonia phage Ashertheman, complete genome) position: , mismatch: 10, identity: 0.697

gtcgtccaggccgacgggactatgcccgccaat	CRISPR spacer
ctcgtgcaggccgacgggacgatgctgcgtacg	Protospacer
 **** ************** ****.   .*  

31. spacer 3.4|4855935|33|NZ_CP019304|CRT matches to MH976513 (Gordonia phage Kroos, complete genome) position: , mismatch: 10, identity: 0.697

gtcgtccaggccgacgggactatgcccgccaat	CRISPR spacer
ctcgtgcaggccgacgggacgatgctgcgtacg	Protospacer
 **** ************** ****.   .*  

32. spacer 3.4|4855935|33|NZ_CP019304|CRT matches to MK967396 (Gordonia phage Tangerine, complete genome) position: , mismatch: 10, identity: 0.697

gtcgtccaggccgacgggactatgcccgccaat	CRISPR spacer
ctcgtgcaggccgacgggacgatgctgcgtacg	Protospacer
 **** ************** ****.   .*  

33. spacer 3.8|4856151|33|NZ_CP019304|CRT matches to MH450129 (Gordonia phage Ribeye, complete genome) position: , mismatch: 10, identity: 0.697

gtcgtccaggccgacgggactatgcccgccaat	CRISPR spacer
ctcgtgcaggccgacgggacgatgctgcgtacg	Protospacer
 **** ************** ****.   .*  

34. spacer 3.8|4856151|33|NZ_CP019304|CRT matches to MH976509 (Gordonia phage Bizzy, complete genome) position: , mismatch: 10, identity: 0.697

gtcgtccaggccgacgggactatgcccgccaat	CRISPR spacer
ctcgtgcaggccgacgggacgatgctgcgtacg	Protospacer
 **** ************** ****.   .*  

35. spacer 3.8|4856151|33|NZ_CP019304|CRT matches to MH651168 (Gordonia phage Ashertheman, complete genome) position: , mismatch: 10, identity: 0.697

gtcgtccaggccgacgggactatgcccgccaat	CRISPR spacer
ctcgtgcaggccgacgggacgatgctgcgtacg	Protospacer
 **** ************** ****.   .*  

36. spacer 3.8|4856151|33|NZ_CP019304|CRT matches to MH976513 (Gordonia phage Kroos, complete genome) position: , mismatch: 10, identity: 0.697

gtcgtccaggccgacgggactatgcccgccaat	CRISPR spacer
ctcgtgcaggccgacgggacgatgctgcgtacg	Protospacer
 **** ************** ****.   .*  

37. spacer 3.8|4856151|33|NZ_CP019304|CRT matches to MK967396 (Gordonia phage Tangerine, complete genome) position: , mismatch: 10, identity: 0.697

gtcgtccaggccgacgggactatgcccgccaat	CRISPR spacer
ctcgtgcaggccgacgggacgatgctgcgtacg	Protospacer
 **** ************** ****.   .*  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 4827052 : 4884143 39 Bacillus_phage(25.0%) tail,plate NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage