CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP013917	Sphingomonas sp. LK11 plasmid unnamed2, complete sequence	0 crisprs	NA	0	0
NZ_CP013916	Sphingomonas sp. LK11 chromosome, complete genome	4 crisprs	DEDDh,DinG,cas3,csa3,WYL	1	4
NZ_CP013918	Sphingomonas sp. LK11 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP013916_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013916_1

962471-962570

Orphan

Consensus_repeat	Method
ACCCCTCCCCTGAAGGGGAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013916_1

>merge|NZ_CP013916|1|962471-962570|CRISPRCasFinder
ACCCCTCCCCTGAAGGGGAGGGGGCGGGGGGTGGGGCGCTTCCGCAAACGTTTCGCCGGTGGACAGGCCCCACCCCAACCCCTCCCCTGAAGGGGAGGGG

>NZ_CP013916|1|1|962471-962570|CRISPRCasFinder
ACCCCTCCCCTGAAGGGGAGGGG	GCGGGGGGTGGGGCGCTTCCGCAAACGTTTCGCCGGTGGACAGGCCCCACCCCA
ACCCCTCCCCTGAAGGGGAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013916.1\|WP_076714869.1\|966571_968149_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|237436
NZ_CP013916.1\|WP_076714862.1\|963520_964183_-\|extensin-family-protein	unknown	unknown	gnl\|CDD\|369129
NZ_CP013916.1\|WP_056430890.1\|956223_957198_+\|class-II-fructose-bisphosphatase	unknown	unknown	gnl\|CDD\|236536
NZ_CP013916.1\|WP_076714872.1\|968970_970077_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|372589
NZ_CP013916.1\|WP_156884173.1\|962071_962467_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013916.1\|WP_042490639.1\|962599_963487_-\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP013916.1\|WP_076714852.1\|955308_956064_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP013916.1\|WP_076714858.1\|960610_961957_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|227122
NZ_CP013916.1\|WP_076714854.1\|958937_959870_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP013916.1\|WP_076714868.1\|965266_966421_+\|phosphoserine-transaminase	unknown	unknown	gnl\|CDD\|235103
NZ_CP013916.1\|WP_076714871.1\|968632_968974_+\|endonuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NZ_CP013916.1\|WP_076714850.1\|953770_955312_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|270325
NZ_CP013916.1\|WP_076714876.1\|971602_972019_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374106
NZ_CP013916.1\|WP_076714874.1\|970189_971479_+\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|234904
NZ_CP013916.1\|WP_058745464.1\|958179_958941_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
NZ_CP013916.1\|WP_076714864.1\|964225_964447_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226181
NZ_CP013916.1\|WP_083706538.1\|957332_958052_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP013916.1\|WP_076714848.1\|952537_953365_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	unknown	unknown	gnl\|CDD\|236996
NZ_CP013916.1\|WP_076714866.1\|964446_964953_-\|DUF2975-domain-containing-protein	unknown	unknown	gnl\|CDD\|378586
NZ_CP013916.1\|WP_076714856.1\|959903_960611_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239321

Protein	Function_ID	Function_description	E-value
NZ_CP013916.1\|WP_076714869.1\|966571_968149_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|237436	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional.	0
NZ_CP013916.1\|WP_076714862.1\|963520_964183_-\|extensin-family-protein	gnl\|CDD\|369129	pfam06904, Extensin-like_C, Extensin-like protein C-terminus. This family represents the C-terminus (approx. 120 residues) of a number of bacterial extensin-like proteins. Extensins are cell wall glycoproteins normally associated with plants, where they strengthen the cell wall in response to mechanical stress. Note that many family members of this family are hypothetical.	2.26589e-66
NZ_CP013916.1\|WP_056430890.1\|956223_957198_+\|class-II-fructose-bisphosphatase	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
NZ_CP013916.1\|WP_076714872.1\|968970_970077_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|372589	pfam13393, tRNA-synt_His, Histidyl-tRNA synthetase. This is a family of class II aminoacyl-tRNA synthetase-like and ATP phosphoribosyltransferase regulatory subunits.	9.83065e-77
NZ_CP013916.1\|WP_042490639.1\|962599_963487_-\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.26877e-49
NZ_CP013916.1\|WP_076714852.1\|955308_956064_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	7.71894e-95
NZ_CP013916.1\|WP_076714858.1\|960610_961957_-\|M48-family-metalloprotease	gnl\|CDD\|227122	COG4783, COG4783, Putative Zn-dependent protease, contains TPR repeats [General function prediction only].	4.94327e-81
NZ_CP013916.1\|WP_076714854.1\|958937_959870_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	2.64815e-95
NZ_CP013916.1\|WP_076714868.1\|965266_966421_+\|phosphoserine-transaminase	gnl\|CDD\|235103	PRK03080, PRK03080, phosphoserine transaminase.	0
NZ_CP013916.1\|WP_076714871.1\|968632_968974_+\|endonuclease-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	1.35128e-39
NZ_CP013916.1\|WP_076714850.1\|953770_955312_-\|ABC-transporter-permease-subunit	gnl\|CDD\|270325	cd13607, PBP2_AfProX_like, Substrate-binding protein ProX of ABC-type osmoregulatory transporter from Archaeoglobus fulgidus and its related proteins; the type 2 periplasmic-binding protein fold. This subfamily includes the periplasmic substrate-binding protein ProX from the hyperthermophilic archaeon Archaeoglobus fulgidus and its related proteins. AfProX is involved in uptake of compatible solutes such as the trimethylammonium compound glycine betaine and the dimethylammonium compound proline betaine, but the relative substrate preference is not known. To counteract the efflux of water, many microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. AfProX belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.33898e-111
NZ_CP013916.1\|WP_076714876.1\|971602_972019_-\|hypothetical-protein	gnl\|CDD\|374106	pfam15782, GREB1, Gene regulated by oestrogen in breast cancer. GREB1 (gene regulated by estrogen in breast cancer 1) was first identified as an oestrogen-regulated gene expressed in breast cancer. Its exact function is not known but its expression is regulated by the coordinated binding of oestrogen-receptors to distal sites interacting with Pol II to activate gene transcription from core promoters located at a considerable distance from the greb1 gene.	0.000345369
NZ_CP013916.1\|WP_076714874.1\|970189_971479_+\|adenylosuccinate-synthase	gnl\|CDD\|234904	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional.	0
NZ_CP013916.1\|WP_058745464.1\|958179_958941_-\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	1.5061e-60
NZ_CP013916.1\|WP_076714864.1\|964225_964447_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|226181	COG3655, COG3655, Predicted transcriptional regulator [Transcription].	1.52512e-26
NZ_CP013916.1\|WP_083706538.1\|957332_958052_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.17696e-12
NZ_CP013916.1\|WP_076714848.1\|952537_953365_+\|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase	gnl\|CDD\|236996	PRK11830, dapD, 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional.	0
NZ_CP013916.1\|WP_076714866.1\|964446_964953_-\|DUF2975-domain-containing-protein	gnl\|CDD\|378586	pfam11188, DUF2975, Protein of unknown function (DUF2975). This family of bacterial proteins have no known function. These proteins are likely to be integral membrane proteins. The proteins contain a highly conserved glutamic acid close to their C-terminus.	6.19978e-06
NZ_CP013916.1\|WP_076714856.1\|959903_960611_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|239321	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.	1.11633e-56

>NZ_CP013916.1|WP_156884173.1|962071_962467_+|hypothetical-protein
MLMIDAGQVSPMPALPNCAIAGARPATRRMAELPTPVHDALLASVGQPIAEAGGPFHASDVVPPNAPPRVRFLRAYRVRDLWLVWVEKGGIGHDFRLLAFRDAAKGASVAVPVPQDTSRNLCTASRAMAKV
>NZ_CP013916.1|WP_076714858.1|960610_961957_-|M48-family-metalloprotease
MKRLIAAFAVTVLIWAQPVAAQSILRDAETESLFADMSAPMIKAAGLSPRDVKIVLINDDSINAFVAGGQIVYVHSGLLQAADNVNEVQGVVAHELGHIADGHVILSEQAMKPAMKMQLLSMVLGLATIAMGGGAAGMGVLAAGQQAAMGQVLAFSRNQESAADAAGARYLTTAGITGKGMLSFFKKLQNQQYRYGYTNIDPFAQTHPLSATRIQSLTADLQGSPAWNTPIDPRLQERFLRVKAKLFGYVSPPETTLSKYPDTDQSVYAHYARAYAYHKAAYPDKAEAEAVALIAKDPKDPYFQEIQGQILLESGKPQEALAPLRAATMGSGQNALIATTFGHALIATEDKRNLPEAVKVLKVAVQRDEDNPFAWVQLGTAYEQMGDEPRAALATAERASMMGDTRTAIQSARYAMANLTPNTSEWIRAQDIAMTSADAAASSKKKRR
>NZ_CP013916.1|WP_076714856.1|959903_960611_-|thioredoxin-domain-containing-protein
MGMKTLAAVAVLGGLVGGGTALALAPLVASGGASGDSVRAYLLDHPEVIPEAMQRLQDREQGKAVAAIGGDLTKPFGNAYTGNPKGDVTLVEFYDYNCGYCRASLPLLKQLAQADPKLRIVYRELPILAPSSRAAARASLLAASQGKFAAFHDALYAGGPVSDATIAAAAAKAGVDMSRMAAFQPQADAEIARNLEAAGRLGLTGTPSWIVGNRILSGALPLEQLQKAVAEARNR
>NZ_CP013916.1|WP_076714854.1|958937_959870_-|ABC-transporter-ATP-binding-protein
MTDPILSVEGVTKTYKGGFTALQPVDLSIRRGEIFALLGPNGAGKTTLISIVCGIVTPSAGTIRVDGHDALRDYKGARRKIGLVPQELSVDMFERVIDTVNFSRGLFGRAPSPAYVEQVLRDLSLWDKRHAKLMELSGGMKRRVLIAKALSHEPDLLFLDEPTAGVDVELRRDMWKLVHRLRERGVTIILTTHYIEEAEEMADRVGVIAKGKLLLVEEKAEMMKKLGKREMVLTLAEPMAAIPATLAEWQLTLEDEGKRLRYIFDARAEHTGIPSLLRRLGELGIGFNDLETYKSSLEDIFVDLVEGTRA
>NZ_CP013916.1|WP_058745464.1|958179_958941_-|ABC-transporter-permease
MNLHGIWSIYRFEMARFRRTVWTSLMVPVITTTLYFVVFGTAIGSAMNQVSGVPYGAFIVPGLMLLSIFSESILNASLGIYMPKFTGTMYEILSAPLSPIETVLGYVGAAASKSMVIGLVILATAHLFVDLTILHPVAMLFYLLLVAVTFSLFGFAIGIWARGFEQLQVIPLLIVTPLTFLGGAFYSVTILPEPWRTVTLFNPVVYLINGFRWTFFGTSDVTPGVSLGVTALFLLACLAWIGWIFRTGWRLKN
>NZ_CP013916.1|WP_083706538.1|957332_958052_+|CPBP-family-intramembrane-metalloprotease
MTTAAALLLLAALAGIWWFQKGDLGEYRRFSALNDSHSRRMRFRLWLARSALAFLLPVLVGLALLGRSDALVVMPDEFAPVAATMPPIFDSGEAMQGMLIGGAIGGLVVGAVLARLRKRKPLGNISALLPRERREVKYAAALSIMAGVTEEAFFRLYLPLLVAMATGQAGIGFVASLILFGAMHRYQGWVGVVATTALGAVMTGLYLMTGSLWVVMLVHVLVDLNGLVVTPVLGGVLRK
>NZ_CP013916.1|WP_056430890.1|956223_957198_+|class-II-fructose-bisphosphatase
MSQTDLQSASQVLDRVLVLEMVRVTEAAAIAASTLVGRGDEKAADAAAVEAMRAALNELDMDGTVVIGEGERDEAPMLFIGEKVGTGNGPEIDIALDPLEGTTICAKAGPNSLAVLAIAEKGHLLNAPDVYMDKIAVGPGYPAGVIDLDRSPSDNIRAIAEAKGVAAKDIVVCVLDRPRHEGLIAELRGLGCGVVLIGDGDVAGVIATTDPDTTIDVYMGSGGAPEGVLACAALRCVGGQFKGRLLFRNDAERARAHKWGVTDLDKQYDLTELAQGDCIFAATGVTDGSLLAGVKRRPKVMTTESVVMRASSGTVRWVKGQHRL
>NZ_CP013916.1|WP_076714852.1|955308_956064_-|ATP-binding-cassette-domain-containing-protein
MPKPMIVLEKVSRRYGTVAAVDTVSLTVERGAFVALVGASGSGKSTLLRMINRLEQPDTGRVLIDGQDVTAEPPPLLRRHIGYVFQQHGLFPHMTVAANIAIGLRIAGRTVGNRMDELLDLVDLPRDVAQRMPDALSGGQRQRVAIARALATEPPILLLDEALGALDPVTRDAVAGRLVELHQRLGLTTILVTHDMAEALLTAARVLVMEAGRIVADATPAQLVRGEGGSAAQDLMAVPRHQAERLAALQA
>NZ_CP013916.1|WP_076714850.1|953770_955312_-|ABC-transporter-permease-subunit
MSPFLDALTRVPPLLAQHVLVSMAALLLGILIAVPLAFACARRPGLSRVALGFASLVQTIPALALLALFYPVLLSLSGLVGGGIPALGFLPSLLALTLYALLPILRNGVTGLVELDPAVLQAADAVGMTRAQKLRLVEAPLVAPVLAAGIRTAAVWTIGAATLSTTVGQPSLGDLIFAGLQTQAWALVLAGCFAAAALALVVDALIGLIERGLATRRRWMWLGGLVALALGIALATQPLWPRGGDARRQVVIGAKNFSEQYILARLIGDRLTRAGYDVSYRDGLGSTVAFEATAGGRVDVYVDYAGTLWTTAMRRHDSPPRAAMLGALKDWAATRDVTMLGPLGFENAYAFAMKAPLAQRMGVRSLADLSAAAPRLKLGSDLEFLDRPEWAAVRDAYGLRFARMTPYSPTFMYRALESGRADVISAFSSDGRIAAERLTVLGDPKRAIPGYDAVLLVAKDRAGDAKFVQALRPMLNRIPVEAMREANYRVDRDDAAKESTEAAARWLAKRVGL
>NZ_CP013916.1|WP_076714848.1|952537_953365_+|2,3,4,5-tetrahydropyridine-2,6-dicarboxylate-N-succinyltransferase
MAHELAATIDAAWDNRAELNFATQGEERIAVDRALALLDRGEARVAEPDGDGGWTVNQWLKKAVLLSFRLNDNVLIDNGPGAGHWFDKVPSKFSGWSEADFRAAGFRAVPGSVVRRGAHVAKGAILMPSFVNIGAYVGEGTMVDTWATVGSCAQIGKNVHLSGGAGIGGVLEPLQADPVIIEDGAFIGARAEVAEGVRVGEGAVLSMGVYLGASTKIIDRETGEVFRGHVPPYSVVVPGTTPSVDGKPGLYCAVIVKRVDAQTRSKTSINDLLRD
>NZ_CP013916.1|WP_042490639.1|962599_963487_-|TIGR00730-family-Rossman-fold-protein
MTDKTQVPNRVFPNASQDAESAKTIVSTPQTESPAYTLAFQDMDFLLREDLRPVRFQLELLKAQLLLEEAKIASTFVFYGSARIPEPAKAEALLALAHDDKSRKIAENLVAKSKYYDIARELAQITSRLPRDDRGMRQFVVCSGGGPSIMEAANRGAADVGAESVGLNIVLPHEQAPNPYVTPSLSLQFHYFALRKMHFLLHARALAAFPGGFGTFDELFELLTLIQTGKIQPIPVLLFGRAFWERVVNFEALVEEGVVSERDLGIFTYVETAEEAWDVVRNFYEERARKEAEQA
>NZ_CP013916.1|WP_076714862.1|963520_964183_-|extensin-family-protein
MVRVPLFLVVPILGAALLSACGRPDRPVQQASRPEPYRPPVRETAQCEADLRREGVDYRRLPDKELGPGCGLYGAVQLTDIGVPVTGVTAMRCGNARAFAGWVRNAVAPAAWQILGSPLAKVEGMGTYACRNIVGTKRIGDRRSGHALANAVDVGGFVLKDGRRITLLNDWHSTDPQVRQFWTVIRASACKRFGTVLSPDYNAAHRNHLHLEDDAAHFCR
>NZ_CP013916.1|WP_076714864.1|964225_964447_-|helix-turn-helix-transcriptional-regulator
MAIRINLDRLLLDRRMSLTELAERVDLTLANLSILKTGKARAIRFTTLDAICTVLDCQPGDILEHVADTPQNG
>NZ_CP013916.1|WP_076714866.1|964446_964953_-|DUF2975-domain-containing-protein
MTRFASHISTLLYVALLAILAFVTAVILAAAGVLIVDAISPGALGAVHVNAKALDMKTSGVVAAALAVMLTALGLAWASLLPLIQMLRSTAAGAPFTLANVKRLNWIAGTIAVAYLLQFALPPILPFDAHDMVKPMGVDGVFAILLTLVLAQIFREGVRLREDAEGTI
>NZ_CP013916.1|WP_076714868.1|965266_966421_+|phosphoserine-transaminase
MTDLNTADATLAPAKPATKPARPYFSSGPCAKPPGWEAAKLATDSLGRSHRSKIGKQRLQYCIDLMRELLKLPDTHRIGIVPGSDTGAFEMAMWTMLGARPVTTLAWESFGEGWVTDAVKQLKLDPTVLRADYGQIADLDAVDWSNDVLFTWNGTTSGVRVPNGDWIADDREGLSFADATSAVFAYDLPWDKIDVATFSWQKVLGGEGAHGVLILGPRAVERLETYTPAWPLPKVFRLVSKGKLAEGVFKGETINTPSMLAVEDAILALEWGKGLGGAEALIKRSDANAAALNKIVEERDWLGHLAADPAIRSTTSVCLTVEGADEAVIKKMTALLEAEGAAYDVAGYRDAPAGLRIWCGATVETADIEALGPWLDWAYATAKA
>NZ_CP013916.1|WP_076714869.1|966571_968149_+|phosphoglycerate-dehydrogenase
MPKVLISDKMDPKAAQIFRERGVEVDEITGKTPEELKAIIGEYDGLAIRSSTKVTKEILEHATNLKVVGRAGIGVDNVDIPAASAKGVVVMNTPFGNSITTAEHAIALMFALARQLPEADASTQAGKWEKNRFMGVELTSKTLGLIGAGNIGSIVADRALGLRMKVVAFDPFLTPERALEMGVEKVTLDELLARADFITLHTPLTDQTRNILSAENLAKTKKGVRIINCARGGLIDEEALKAGLDSGHIGGAALDVFKVEPAKESPLFGTPNFISTPHLGASTTEAQVNVAIQVAEQLADFLVSGGVTNALNMPSLTAEEAPKLKPYMALAEKLGSLVGQLSHGAVTGIAIEAEGAAAALNLKPITGAVLAGFMRVHSDTVNMVNAPFLAKERGLDVREVRHDREGDYHTLVRVTVTTADGERSVAGTLFGDQAPRLVELFGIKVEADLAGPMLYVVNEDAPGFIGRLGTTLGEAGVNIGTFHLGRRSAGGEAVLLLSVDEAVDAELLAKVKALPGVKTAMGLVF
>NZ_CP013916.1|WP_076714871.1|968632_968974_+|endonuclease-domain-containing-protein
MQTDPVLRDRARAMRREMTEPEKRLWLILRDRRFHNIKFSRQVAIGPYIADFAARSHKLVIEVDGDTHNDQSRDARRTTWLQSRGYAVIRFRNADVMTNPDGVAHTLMNRLIR
>NZ_CP013916.1|WP_076714872.1|968970_970077_+|ATP-phosphoribosyltransferase-regulatory-subunit
MTALLPEGYHDRLPPYADAAASVEARVLEAARLHGYERADPPSIEFAEALGSRLKAGGLHDAVRFVDPVSQRTLAIRPDLTAQVARIAATRMGHHPRPVRLSYAGTVVRLRGSELAPAREWRQIGAELIGLDSTAAATEVVRVAVEALIAAGTTGISIDFTLPDLVDLLAAGPLPVAADQVAALRDRLDAKDAGGVAAIAPDYLPLVEAAGPFATAMERLRAFDAQGVLAGRLDALEAIAGALGERVSMTLDPTERHGFEFQSWLGFSLFVAGPPREVGRGGTYTIFHEDGAEEKATGFSLYADAIVATAPPTERRRLFLPFGTAPETGASLRVQGWVTVQALEEGDTPEAQLCTHILNNGQPTAIAG
>NZ_CP013916.1|WP_076714874.1|970189_971479_+|adenylosuccinate-synthase
MANVAVIGAQWGDEGKGKIVDWLAERADMVVRFQGGHNAGHTLVVGENVYKLSLLPSGIVRGTPSVIGNGVVLDPWALKAEIERLAEQGVHASPETLRIADNCPLILPIHRDLDGLREDASGAGKIGTTRRGIGPAYEDKVGRRAIRVCDLAHLDDLGPQLDRLCAHHDALRAGFGEPPVDRERLLADLREIAAFVLPFAKPVWRDLNEARTGGKRILFEGAQGVLLDIDHGTYPFVTSSNTIAGAAAGGSGLGPSGVGFVLGIAKAYTTRVGSGPFPTELEDETGQRLGERGHEFGTVTGRKRRCGWFDSVLVRQSAAVGGITGIALTKIDVLDGFDEVKICVGYKLGDETLDYYPTHAADQAKVVPVYETMEGWQESTAGARSWADLPAQAIKYIRRIEELIRCPVALVSTSPEREDTILVRDPFAD
>NZ_CP013916.1|WP_076714876.1|971602_972019_-|hypothetical-protein
MRYMHVIAAAALVIPAAGFAQVSGGTAGGMSGQTTAPGQSMPGQTMPGQMPGQTMGQPGDTMSTTPGTTTRSTTRGKSRSRTTTPDSTVNTPSTLPDATGSSTTTGSGTLGSDPTTSGQVGTGTSGGTTTPPGSSGGM

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Crispr_ID: NZ_CP013916_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013916_2

3694358-3694479

Orphan

Consensus_repeat	Method
CCGGCCAAGCCCAAGCGTGTCCGCAAGAAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013916_2

>merge|NZ_CP013916|2|3694358-3694479|CRISPRCasFinder
CCGGCCAAGCCCAAGCGTGTCCGCAAGAAGGCCGCTCCCAAGGTTGCCGCCGAGGAAGCCGCTCCGGTCGCCGAGGCGGAAGCCGAAGCCCCGGCCAAGCCCAAGCGCGTCCGCAAGAAGGC

>NZ_CP013916|2|2|3694358-3694479|CRISPRCasFinder
CCGGCCAAGCCCAAGCGTGTCCGCAAGAAGGC	CGCTCCCAAGGTTGCCGCCGAGGAAGCCGCTCCGGTCGCCGAGGCGGAAGCCGAAGCC
CCGGCCAAGCCCAAGCGCGTCCGCAAGAAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013916.1\|WP_076717575.1\|3690252_3691488_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_CP013916.1\|WP_156884327.1\|3683563_3684010_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013916.1\|WP_076717579.1\|3695406_3696621_+\|methionine-gamma-lyase	unknown	unknown	gnl\|CDD\|181005
NZ_CP013916.1\|WP_056436618.1\|3684284_3685055_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225139
NZ_CP013916.1\|WP_172839695.1\|3706220_3706949_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP013916.1\|WP_056437140.1\|3705131_3705701_+\|NifU-family-protein	unknown	unknown	gnl\|CDD\|214919
NZ_CP013916.1\|WP_076717567.1\|3682826_3683567_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|286740
NZ_CP013916.1\|WP_076717563.1\|3680884_3681352_-\|dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|365932
NZ_CP013916.1\|WP_172839744.1\|3699258_3702189_-\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP013916.1\|WP_076717590.1\|3706948_3707434_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP013916.1\|WP_156884395.1\|3686250_3688671_-\|transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|227342
NZ_CP013916.1\|WP_076717586.1\|3705700_3706291_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP013916.1\|WP_042489612.1\|3697157_3698999_-\|translational-GTPase-TypA	unknown	unknown	gnl\|CDD\|224138
NZ_CP013916.1\|WP_076717582.1\|3702398_3703118_+\|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377460
NZ_CP013916.1\|WP_156884328.1\|3689873_3690182_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013916.1\|WP_076718432.1\|3694836_3695292_-\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP013916.1\|WP_076717573.1\|3688809_3689763_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|223982
NZ_CP013916.1\|WP_156884326.1\|3682247_3682631_+\|DNA-repair-protein	unknown	unknown	gnl\|CDD\|163702
NZ_CP013916.1\|WP_076717584.1\|3703230_3705027_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP013916.1\|WP_056436615.1\|3685056_3686184_-\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799

Protein	Function_ID	Function_description	E-value
NZ_CP013916.1\|WP_076717575.1\|3690252_3691488_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	4.7173e-51
NZ_CP013916.1\|WP_076717579.1\|3695406_3696621_+\|methionine-gamma-lyase	gnl\|CDD\|181005	PRK07503, PRK07503, methionine gamma-lyase; Provisional.	0
NZ_CP013916.1\|WP_056436618.1\|3684284_3685055_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	5.88942e-10
NZ_CP013916.1\|WP_172839695.1\|3706220_3706949_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	1.3935e-40
NZ_CP013916.1\|WP_076717590.1\|3706948_3707434_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	7.52448e-26
NZ_CP013916.1\|WP_076717567.1\|3682826_3683567_-\|hypothetical-protein	gnl\|CDD\|286740	pfam09694, Gcw_chp, Bacterial protein of unknown function (Gcw_chp). This entry represents a conserved hypothetical protein about 240 residues in length found so far in Proteobacteria including Shewanella oneidensis and Ralstonia solanacearum, usually as part of a paralogous family. The function is unknown.	9.8977e-14
NZ_CP013916.1\|WP_076717563.1\|3680884_3681352_-\|dihydrofolate-reductase	gnl\|CDD\|365932	pfam00186, DHFR_1, Dihydrofolate reductase.	3.00885e-73
NZ_CP013916.1\|WP_172839744.1\|3699258_3702189_-\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	5.75739e-44
NZ_CP013916.1\|WP_156884395.1\|3686250_3688671_-\|transglycosylase-domain-containing-protein	gnl\|CDD\|227342	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP013916.1\|WP_076717586.1\|3705700_3706291_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	3.04444e-108
NZ_CP013916.1\|WP_042489612.1\|3697157_3698999_-\|translational-GTPase-TypA	gnl\|CDD\|224138	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms].	0
NZ_CP013916.1\|WP_076717582.1\|3702398_3703118_+\|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein	gnl\|CDD\|377460	pfam05118, Asp_Arg_Hydrox, Aspartyl/Asparaginyl beta-hydroxylase. Iron (II)/2-oxoglutarate (2-OG)-dependent oxygenases catalyze oxidative reactions in a range of metabolic processes. Proline 3-hydroxylase hydroxylates proline at position 3, the first of a 2-OG oxygenase catalyzing oxidation of a free alpha-amino acid. The structure of proline 3-hydroxylase contains the conserved motifs present in other 2-OG oxygenases including a jelly roll strand core and residues binding iron and 2-oxoglutarate, consistent with divergent evolution within the extended family. This family represent the arginine, asparagine and proline hydroxylases. The aspartyl/asparaginyl beta-hydroxylase (EC:1.14.11.16) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins.	2.11303e-32
NZ_CP013916.1\|WP_056437140.1\|3705131_3705701_+\|NifU-family-protein	gnl\|CDD\|214919	smart00932, Nfu_N, Scaffold protein Nfu/NifU N terminal. This domain is found at the N terminus of NifU and NifU related proteins, and in the human Nfu protein. Both of these proteins are thought to be involved in the the assembly of iron-sulphur clusters.	1.01556e-41
NZ_CP013916.1\|WP_076718432.1\|3694836_3695292_-\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.78776e-49
NZ_CP013916.1\|WP_076717573.1\|3688809_3689763_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|223982	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only].	3.29042e-156
NZ_CP013916.1\|WP_156884326.1\|3682247_3682631_+\|DNA-repair-protein	gnl\|CDD\|163702	cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.	1.37451e-26
NZ_CP013916.1\|WP_076717584.1\|3703230_3705027_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.20705e-65
NZ_CP013916.1\|WP_056436615.1\|3685056_3686184_-\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0

>NZ_CP013916.1|WP_076717575.1|3690252_3691488_-|N-acetylmuramoyl-L-alanine-amidase
MAFRWTSDARARHGCRVVLMLFTFLIGLFAPMSAMAATVQKVVVRGARLIIRFDTPVKRARSVMLTEQRRVAIDVTGASPGPATIDDGVVRGLTQTRIQPGVTRLTFALAQDAAIFDGGFDDDGKTLSLTLKPMVGRYTQASFAGVLDFFPFHFQRKPAYTLTVPVPSPSRALPLPRVKGADNRPLVVIDAGHGGVDPGAINPQTGLREKDVTLAIAKEIRDTLVASGRVRAALTREDDRYILHRERYGIARRLHADLFISIHCDSAGAGEARGATAYTLSDVASDKEAARLAARENKADVIAGVDLGGNSDVSSILIDLTQRETMNASASFARLLGREAQPLIPVKPTFHRMASLMVLKAPDMPSILFETGYISNMQDAAFLASEEGRERIAKAVLQAVEVHFARRMAAR
>NZ_CP013916.1|WP_156884328.1|3689873_3690182_+|hypothetical-protein
MLNDVYFPDTSYTSITNPDSTVCHECWTLGGNMKISKLAILAAIMMSTTAAAQYTDYAYVKVYYTDATRQQVAGRETAYCSGDIEYSGNATPYYRYYNGMCP
>NZ_CP013916.1|WP_076717573.1|3688809_3689763_-|rhodanese-related-sulfurtransferase
MIRVCALYRFAAFPDPAALRAPLLAVAEANGIRGTLLLASEGINGTVAGSTHAIEALLAHIRTLPGCADVDYKDSTAETMPFHRMKVRLKREIVSMGVEGIDPRREVGTYVAGEEWNALITDPDTLLIDTRNDYEVAIGTFDGAVDPGTRSFRDFPDWFRQNRDELMAGKSKVAMFCTGGIRCEKATAFLKAEGVADVFHLDGGILKYLETMPEEKSRWKGECFVFDARVAVGHGLAQGSHGLCHGCRMPVSPEDRASPLYVEGVSCPACHGTRDAERLAAYAERHRQEALAAARGQAHVGARYPSAEDARDEPQPL
>NZ_CP013916.1|WP_156884395.1|3686250_3688671_-|transglycosylase-domain-containing-protein
MRVLAVLALLAAIGGGVFWFVFIRDLPSVDALKAYEPPLPTHVRGIDGTPIQSYARERRVELSYNEYPPLLVRAFLAAEDKSFFEHGGVDYPGLAGAVIDYAKKFGSGRRARGGSTITQQVAKNLLIGDAYSPTRKIKEAILAYKIEDTLTKPQILELYLNQIALGRNAFGVEAAAHAYFDKELDELTLGQMAYLALLPKGPANYDPVRHPDRALERRAYVLREMLSNNFITRAQYDAAMAEPLGTVLRRTPKYAQVGGYFVEEVRRQLIKRYGEKAESGPNSVYDGGLWVRTSLDTRLQDLAAEALRDGLIRFEGGRGWSGPIRHEDIEDGNWQQVLLNTNIGLDYRDWRAGIVTAKTSGEATIGFANGRTGTLPRSFAQMPRRGTAATAFSALKVGDIIAVSPAGEQFQLRSIPRISGGFVVEEPATGRVLAMQGGFDARLQAFNRATQAERQPGSTIKPIVYSAALNSGMTPASIIVDGPFCVDQGAGLGTKCFRNFGNSAGAGPHTMRWGIEQSRNLMTVRTASTVGMKNVVATIKQMGIGDFPPYLAYALGAGETTVGQMVNAYAILANNGRGGDPSLIDFAQDRHGKVIWPENWRACDRCNAADYDGKPMPRPVSRQRQVLDAMTAYQMVHITEGVIQRGTATGLRDLNRPMFGKTGTNNGPTDVWFVGGTPQFVGGLYIGYDTPRSLGGYAQGGTIAVPIFRQFAEKAYEGLEKLPFRAAPGIRMVRIDRASGRPVYGTFPTGDDPKPAVIWEAFKPESEPRRRARRAAAAEAPATPTGPTRPAPPRDSDFLQREGGIY
>NZ_CP013916.1|WP_056436615.1|3685056_3686184_-|peptide-chain-release-factor-2
MRAEAQAHVDKIKDALELLRRFLDWDRALRRLDELNARVEDQALWNDPKQAQEVMRERRRLDEAITATRAIENELSGTVELIELAEMEGDEDLEKEAVASLGELAKKAEADKIKALLAGEADANDSYIEINAGAGGTESQDWAGMLQRMYTRWAERHGMKVELIDYHAGEQAGIKSATLLVKGENAYGYAKVESGVHRLVRISPYDSAARRHTSFSSVWVYPVIDDNIEVEINESELRIDTYRASGAGGQHINTTDSAVRITHLPTGIVVQCQNQRSQHKNKAEAYNQLRARLYERELAEREAVANAENATKTDIGWGHQIRSYVLQPYQLVKDLRTGTTSTAPGDVLDGDLDAFMAAALSQRVTGEAVAVEDVD
>NZ_CP013916.1|WP_056436618.1|3684284_3685055_-|methyltransferase-domain-containing-protein
MRVRGAGPLMAAAALVIALGGVVAACDGSKPLIQQRDDGDDDKVGPFPAADRPVADVVSSRWSSEDARDRLREADQVMDRAKIRPGMTVADIGAGEGYYTVRLAQRVGKTGRVLAEDIVAAWRDRLAERVSRERLDNVSVRLGEPADPKLPPTSFDRVLMVHMYHEIEQPYEFLWRLFPALKSDGLVVVVDADRRTKAHGTPPALLKCEFEAVGFTQVSIENMPSAGGYLATFRATGPRPDPKAIRPCRMKDNQGG
>NZ_CP013916.1|WP_156884327.1|3683563_3684010_-|hypothetical-protein
MNMLLIAGLALGGVVASDGALEHRVQLDHHSGPVAVRYSADVGVTHKQIGAVTTGGRPSTLRCLWSANVTVHREARGASGTALMRSAAQDRVIEGSRPGWCSTNRNAIAQEVARRHDAVRDHLQAVAQEDHGLLRAEMDRLHAETRAG
>NZ_CP013916.1|WP_076717567.1|3682826_3683567_-|hypothetical-protein
MSLRIIALGVVLGTSIASPLLAQERPSIGVEVNSDENRRGLSWSGGRVSPSADIFATSGPFEASGRIVALRESARHGGAGVVGDLSLGASTLLGPVTVRGRVTGHLFGGAGFNADYVELGGSAAYTLGPVQVDAGADYAPSQSAIGGDNLYLHAGAQAGIPGTPWTLLAGLGHSSGKIDNPFRAARLRPGGDYSDWRVGVQHVTGPVTLGLDYVGTDVSDRAASAFPLADARHSGDRIVGRVRFGF
>NZ_CP013916.1|WP_156884326.1|3682247_3682631_+|DNA-repair-protein
MPRPPLRIVTRRDALGLFGGLDRRDKEAMGIAYLGSERMLLGLRHIAGRHDSVTVPVARIARDAILMEASAVLIAHNHPDGDTRPSAADLSLTRRLAQGLAALDVMLLDHLILGSGRVLSFREEGLV
>NZ_CP013916.1|WP_076717563.1|3680884_3681352_-|dihydrofolate-reductase
MITLVLARARNGVIGRDGGLPWHLPADLKRFKALTMGKPMIMGRKTFDSFPAPLPGRRHIVLTRDRAWSAPGAEVAHDVAGALALAGEGPVAVIGGAEIFDLFRDIADRVELTEVNIDAEGDVVVATFSNWREVERQDHPASDDRPSYSFVTLER
>NZ_CP013916.1|WP_076718432.1|3694836_3695292_-|Lrp/AsnC-family-transcriptional-regulator
MDTKDRQIVRLLQQDGRLTNQELSERVGLSPSPCLRRVRLLEQAGVIQGYGAIVDQQRYGLPVTAFIRVRLERHARDLVQQFEEAIRQLDEVMDCHLLTGDADYLLRVIVADLEAYERFIRRKMHAIAGITSLDTTFAYGVVKSSRTFPVD
>NZ_CP013916.1|WP_076717579.1|3695406_3696621_+|methionine-gamma-lyase
MSTPAPFGFSTAAIHHGYDPQDHEGALTPPLHLTSTFAFESAEDGAARFSGEAPGHVYSRISNPTLDLLERRVAHLEGAEAALGTASGMGAITATLWTLLRPGDEILTDMTLYGCTFAFMQHGLGRFGIRVTHVDMTDIAAVEAAFGPDTKLVYFETPANPNMRLVDIQAVCALAKAHGAWSMVDNTYATPVITRPIALGADFVVHSATKYLGGHGDLVAGMVLGRAADIQQVRLFGVKDMTGAVLSPFNAMLILRGLKTLELRVQRHAASAQAIAERLQAHPAVHAVHYPGLESFPQHDLARRQMALPGGMIAFQVRGGFEAGKRVMNRLTLIQRAVSLGDAETLIQHPASMTHSTYPVEQLIAHGIMPDLVRLSVGLEDVRDIWADLGAALDAELGTLSHAA
>NZ_CP013916.1|WP_042489612.1|3697157_3698999_-|translational-GTPase-TypA
MSLRNVAIIAHVDHGKTTLVDQLFRQSGTFRDNQRVEERAMDSNDLEKERGITILAKPTSVDWTPPGSDESIRINIVDTPGHADFGGEVERILSMVDGVVLLVDSSEGAMPQTKFVTGKALALGLKPIVVVNKVDRADARIQEVLDEVFDLFVSLDANDEQLDFPVLYASGRNGYASTDMDAREGTLIPMFETIVNHVPAPKVEVEDVPFTFLVTLLDRDNFLGRILTGRVNSGTVKLNQAIHALDADGNIVETGRASKIMSFRGLDRVPVEEAKAGDIISLAGLAVATVANTIADTSVSEPLKAQPIDPPTLSMRFAVNDSPMAGREGSKVTSRMIRDRLMREAESNVAVKVTESDDRDSFEVAGRGELQLGVLIETMRREGFELGISRPRVLFGEDEDGKKTEPYETVIIDVDEEYSGTVVEKMNLRKAEMTDMRPSGGGKTRITFSAPSRGMIGYHGEFLSDTRGTGIMNRLFEKYGPHKGKIEGRKNGVLISNGAGEAQGYALGPLEERGILFVGHGEALYEGMIIGENAKTDDLEVNPMKAKQLTNFRASGGKDDAIRLTPPKKMTLEQAIAYIDDDEMVEVTPKSIRLRKRYLDPNERKRAARSKAA
>NZ_CP013916.1|WP_172839744.1|3699258_3702189_-|insulinase-family-protein
MRRLALPVLLGLAIPVIGQVPGQTDNRSVPQGMPVSASVAPPPSTPAADPLAPLPPIPGVDQTPWLYKGSDLPQDKMWKFGRLANGLRFAVRRNGVPPGQVAVRVRIDAGALNEQASERGFAHLIEHLSFRGSQYVPDGEAKRIWQRLGATFGSDSNASTTPTQTVYQLDLPGATEAGLDESLKILSGMMAAPSLTAQSLNAERPVVLAERREQPGPQVRYSDKLRETFFAGQPLAERSPIGQLKTLEAATPQTVKAFHDRWYRPERAVVIISGDMDPALLARLVTKNFGSWQGVGPNPPDPDFGKPTADAPVAGALVEPSMPPVVAMAVLRPWQYQDDTAIFNQKRMVDMVAARLISRRLENRARAGGSFLQASVALDDVSRSANLTTVNVVPIGDNWEAALKDVRAVVADAMATPPTQGEIDRELADYDAILRNQVETARVEAGSKQADDMVGALDIRETVTAPETSYQILRQAIDKKMFTPETVLASTRKIFQGTATRALVNTRNVQADAVARLTAALKADVRPLAEQRRRQGTVSFAQLPKLGTPGKVVSREKVSELGLEKVTFANGTRLLLFANDGETARVYLRIRFGRGYDALPANRESPAWAADLALVAGGIGKFDQGDLDRLTAGRTMGLDFDVDDDAFAFNALSSPGDYADNLKLMAAKLIAPRWDAAPVNRAKAAMLAGYDGFDSSPDGVLGHDLERLLRDGDPRWGTPPRDAVVATTPQSFKALWAPLLASGPIEVSVFGDVKADEAIKAVADSFGAIPARKGATGPVPPIRFPAHVATPVVRTHTGPADQAAAVIAWPTGGGSADDRIRNRLDVLAQVFADRLFDRLRSQAGASYSPQVASQWPIGLPGGGRMIAIGMVAPDKVDFFLSTARAIAADLASKPIDADELQRIKRPMAQRLARMASGNLFWMQRLGGATYDPQRIEATKRLAQDFVSIGPADLQAVAARYLRPDTDWTLKVVPRAK
>NZ_CP013916.1|WP_076717582.1|3702398_3703118_+|aspartyl/asparaginyl-beta-hydroxylase-domain-containing-protein
MTKSIKASAQRQGPATIWHNSGEAERPVRPVPTLVAAIPSLPSPPAPPHPALAALCRVFDGVIAASSLVPNDPVLDIRDFDWTAGLRRQWRAIRDEAVAVSGPASTSRIVPLLRDGETANRCPVATAALAEVPGLHDAAFALLAPGAHVEMRRGATKGLLTCHLGLAVPRDGGARMRVRDRIVRWAEGETLIFDDSYPHELWNEAEAARIVLRLRFARPLRQPGQAVADGLLRLIGKTA
>NZ_CP013916.1|WP_076717584.1|3703230_3705027_+|methyl-accepting-chemotaxis-protein
MFIKSVAARLIAPVLVSMLLLAILSAVTLQTEGRVARANQDAAHAEAVMLRLAELRSLSRSLQRDALNLVIESDPAERKVIQGKFDTRLGKFADQLGTLQGDAARYAITPAYFTSQARVRHELTEVGRLAGTGDRAAGLSHFRQRVRPAERLASRIADARIDALTDEVKALHVRADTVAEQGRWILIGATLLLAIAGLATGLYMALRTVVRPLHELRQAMGLLAEGQTGRAIPHAEREDEVGEMARSMVAFRDQLARAEAEKTAQTQLIVASIGQGLSALAKGDLTARIDARLDEPFARLKNDFNTAMAALHATMARVVGATSGVRAGAMDIRQASDDLSQRTEQQAASLEETAAAMDEITATVRHAATGAGDAALALEQTRADARDGGAVVVRARAAMVDIERASSEIEEIIGVIDGIAFQTNLLALNAGVEAARAGEAGRGFAVVASEVRALAQRSADAARDVKQRVLASASGVQNGVALVGETGVALEKINEGMGRLGTLMTGIADDANRQAKGLGEVNTSLSQMDMVTQQNAAMVEQATAAARSLAEEAEQLSQAVERFVLDMPPAPLRVVESVKERVVPLPVRRAANEDWSAF
>NZ_CP013916.1|WP_056437140.1|3705131_3705701_+|NifU-family-protein
MLIETEPTPNPATLKFLPGRKVMDSGTRDFASPEEAAASPLAEAIFNLGDVTGVFFGRDFVSVTVAPGTDWSDVKPDVLGILLDHFSAQMPLFRQGAADFSVPSEDSFTDDPEDADIVAQIRELIDTRVRPAVANDGGDIVYRGFDKGKVYLKMQGACAGCPSSTATLKNGIEQLLRHYVPEVTEVRAV
>NZ_CP013916.1|WP_076717586.1|3705700_3706291_+|malonic-semialdehyde-reductase
MNPIDDASLDRLFREGRTFNHYLDKAVGEDEIRAIWDLMKMPPTSTNQSPARMVWCLSAEAKEKLASCASDSNADKIRNAPAAVIIGMDVNFHETLPQLFPHVDAKSWFDGNTELREASAFRNSSLQGAYLILAARALGLDTGAMSGFDQGAVDKAFFADQPGVRSNFIATLGYGDTSKLHPRNPRLAFEQANRIA
>NZ_CP013916.1|WP_172839695.1|3706220_3706949_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MATRRSCIRATPGWRSNKPTGSPEPNLRTLVIDTATAACSVALLDGDRVVAHGHDVVGRGHAERLVPMIAALPDGGRAARILVDCGPGSFTGIRVGIAAARGLALGWGVTATGYQSLALVAAAGFAARDDAALTVVLEGGHGEVFVQAFARDLTALSPFASMKPDAALAALEGRVAIGNGVRWLTALAPDLPVVEALPDASEAWRLPADLTALPPRPVYGRAPDAKLPGGITPPDAVGLGAA
>NZ_CP013916.1|WP_076717590.1|3706948_3707434_+|GNAT-family-N-acetyltransferase
MASIGISLRPGDARDAGVVERVMAAAFDPQWGEAWTRSQLLGVMALPGIKLLVAEAGEDPAGFALTRSVLDEAELLLLGVTPEHRRTRIGSLLVEAVVADCAAHGVETLHLEVRSNNPAILFYSAHGFAKCGERRNYYKGADGRHYDAHTYRRSIATRAIG

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Crispr_ID: NZ_CP013916_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013916_3

3744737-3744836

Orphan

Consensus_repeat	Method
CCCCTCCCCTTCAGGGGAGGGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013916_3

>merge|NZ_CP013916|3|3744737-3744836|CRISPRCasFinder
CCCCTCCCCTTCAGGGGAGGGGTCGGGGGTGGGGCGCCCGCAACAGGCGAACGGCCAGTGGATAGTCCCCACCCCAACCCCTCCCCTTCAGGGGAGGGGC

>NZ_CP013916|3|3|3744737-3744836|CRISPRCasFinder
CCCCTCCCCTTCAGGGGAGGGGT	CGGGGGTGGGGCGCCCGCAACAGGCGAACGGCCAGTGGATAGTCCCCACCCCAA
CCCCTCCCCTTCAGGGGAGGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013916.1\|WP_156884397.1\|3731338_3732247_+\|4-hydroxybenzoate-octaprenyltransferase	unknown	unknown	gnl\|CDD\|183808
NZ_CP013916.1\|WP_076717646.1\|3757101_3758628_-\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP013916.1\|WP_083706714.1\|3733756_3736189_+\|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NZ_CP013916.1\|WP_076717642.1\|3755758_3756529_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236163
NZ_CP013916.1\|WP_076717640.1\|3752390_3753413_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|273075
NZ_CP013916.1\|WP_172839698.1\|3729032_3730043_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NZ_CP013916.1\|WP_076717626.1\|3738418_3739681_+\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234824
NZ_CP013916.1\|WP_076717622.1\|3732352_3733663_+\|Nramp-family-divalent-metal-transporter	unknown	unknown	gnl\|CDD\|234815
NZ_CP013916.1\|WP_076717644.1\|3756525_3756945_-\|methylmalonyl-CoA-epimerase	unknown	unknown	gnl\|CDD\|319912
NZ_CP013916.1\|WP_056436502.1\|3744847_3745231_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
NZ_CP013916.1\|WP_076717634.1\|3747866_3748754_-\|ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|182518
NZ_CP013916.1\|WP_076717636.1\|3748804_3749248_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013916.1\|WP_076717632.1\|3745227_3745863_-\|cytochrome-(ubi)quinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|239214
NZ_CP013916.1\|WP_076717630.1\|3742914_3744714_+\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP013916.1\|WP_076717624.1\|3736185_3738339_+\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP013916.1\|WP_076718438.1\|3730082_3731093_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NZ_CP013916.1\|WP_042489487.1\|3731089_3731236_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013916.1\|WP_076717628.1\|3741139_3742765_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|100087
NZ_CP013916.1\|WP_076717638.1\|3749326_3750169_+\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP013916.1\|WP_076718442.1\|3753427_3755686_-\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508

Protein	Function_ID	Function_description	E-value
NZ_CP013916.1\|WP_156884397.1\|3731338_3732247_+\|4-hydroxybenzoate-octaprenyltransferase	gnl\|CDD\|183808	PRK12878, ubiA, 4-hydroxybenzoate octaprenyltransferase.	4.54515e-143
NZ_CP013916.1\|WP_076717646.1\|3757101_3758628_-\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP013916.1\|WP_083706714.1\|3733756_3736189_+\|glycogen/starch/alpha-glucan-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NZ_CP013916.1\|WP_076717642.1\|3755758_3756529_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236163	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.	6.15253e-85
NZ_CP013916.1\|WP_172839698.1\|3729032_3730043_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	3.50137e-51
NZ_CP013916.1\|WP_076717626.1\|3738418_3739681_+\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|234824	PRK00725, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_CP013916.1\|WP_076717622.1\|3732352_3733663_+\|Nramp-family-divalent-metal-transporter	gnl\|CDD\|234815	PRK00701, PRK00701, divalent metal cation transporter MntH.	0
NZ_CP013916.1\|WP_056436502.1\|3744847_3745231_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	3.25301e-33
NZ_CP013916.1\|WP_076717638.1\|3749326_3750169_+\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	3.87766e-70
NZ_CP013916.1\|WP_076717644.1\|3756525_3756945_-\|methylmalonyl-CoA-epimerase	gnl\|CDD\|319912	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.	4.46257e-51
NZ_CP013916.1\|WP_076717632.1\|3745227_3745863_-\|cytochrome-(ubi)quinol-oxidase-subunit-III	gnl\|CDD\|239214	cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.	6.67375e-79
NZ_CP013916.1\|WP_076717630.1\|3742914_3744714_+\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP013916.1\|WP_076717624.1\|3736185_3738339_+\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP013916.1\|WP_076718438.1\|3730082_3731093_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	2.75755e-44
NZ_CP013916.1\|WP_076717634.1\|3747866_3748754_-\|ubiquinol-oxidase-subunit-II	gnl\|CDD\|182518	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional.	2.58754e-102
NZ_CP013916.1\|WP_076717628.1\|3741139_3742765_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|100087	cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP013916.1\|WP_076717640.1\|3752390_3753413_-\|biotin-synthase-BioB	gnl\|CDD\|273075	TIGR00433, biotin_synthase, biotin synthase. Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	6.66598e-159
NZ_CP013916.1\|WP_076718442.1\|3753427_3755686_-\|methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0

>NZ_CP013916.1|WP_076717630.1|3742914_3744714_+|glycogen-debranching-protein-GlgX
MTNQLALPLGATPVPGGTRFAVRSTAERVELCLFDGADERRLAMTRDGDVWTTTAPGTNHLYGYRAHGEYDPGRNLWFDPAKLLVDPYALELDRPFIQSPRLAAYGEDTADIVPRARVVTPLTDTPARPLFRPGGLIYELNVRGFTMRHPAIPPEQRGTLAALAHPAVLDHLRKLGVAAVELMPITAAIDERHLPPLGLRNAWGYNPVVPMALCPERVPGGVAELVSTAAVLRQAGIGVILDLVFNHMGESDIHGGTLSFRGLDPDAYARTTDGTLINDAGTGNTLDASRPGVRAMILDSLRHFARAGVDGFRFDLAPVLARGSGFDARAPIFTEIAADPILSTRIMIAEPWDIGPGGYQLGNFPDHWLEWNDKYRDQVRRFWRGDGRAGDLATRIAGSADVFASAASRSVNFVAAHDGFTLADLAAYAQRHNHANGEDNRDGHGDEVSWNHGQEGATDDPAIRGARTRSVRAMLATLFLSRGTPMLTAGDEFGRSQNGNNNGYAQDNEATWLDWEDRDEALEDFVAQLSAFRRDMPLDWTDWLAGGEWRNLSGGPMMPEDWDKGEGFALHLPIGDEKLILRFDHRHGVSAIRGRVLES
>NZ_CP013916.1|WP_076717628.1|3741139_3742765_+|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MIKTVATEPYLDQKPGTSGLRKKVRVFQQRNYAENFIQSTFDALGDEKTGQTLVIGGDGRFLNREVIQVAIRMAAANGFARVVVGQGGILSTPAASNVIRQRKALGGLVLSASHNPGGPDEDFGIKYNISNGGPAPEKVTDAIHANTKSISRWLTVEADDIDLDTPGEVTVGDMTVEVIDSVADYAALMESLFDFAAIQKAVEGGFTMSFDAMSAVTGPYATEILENRLGFAPGTVKNGTPLPDFGGHHPDPNLVHARQLYDRMMAPDAPDFGAASDGDGDRNLIIGRGRFITPSDSLAMLAANAHLAPAYAGGLKGIARSMPTSAAADRVAEKLGIPAYETPTGWKFFGNLLDAGMATICGEESAGTGSDHVREKDGLWAVLLWLNILAASGKSVDQIARDHWATYGRNYYARHDYEGVESERADALMADLRAKLATLPGETFAGLTVEAADDFAYTDPTDQSVSRNQGIRVLFVGGSRVVFRLSGTGTSGATLRVYLERYSADQLDRETPEMLADIIAAADEIAGITQHTGRTEPDVVT
>NZ_CP013916.1|WP_076717626.1|3738418_3739681_+|glucose-1-phosphate-adenylyltransferase
MDLRRGQPLARDAMAYVLAGGRGSRLMELTDTRAKPAVYFGGKARIIDFALSNAINSGIRRIGVATQYKAHSLIRHLQRGWNFLRDERNESFDILPASQRISEFQWYEGTADAVFQNIDIIESYAPEFMVILAGDHVYKMDYELMLQQHCDSGADVTVACLEVSREEASAFGVMHVDETDRIIDFVEKPADPPSIPGNPGVSLASLGIYVFRTAFLFEQLRRDAETPGSSRDFGKDIIPYLVEHGKAQAHRFSASCVRSEDEPGAYWRDVGTVDAYWEASLDLTDVVPQLDLYDRSWPLWTYAEITPPAKFVHDVEGRRGSAVASLIAGDCIVSGSSINRSLLSTGVRTHSYASLNEAVVLPFCQIGRGAQLRRVILDRGVRIPDGLVVGEDPVLDAHRFRRTDKGICLITQPMIDRLAN
>NZ_CP013916.1|WP_076717624.1|3736185_3738339_+|1,4-alpha-glucan-branching-protein-GlgB
MKPPRAALDALIEGRNADPFALLGPHEGPGGTFLRALVPGAEAVMAFDLSGTALGDLKSVDARGLFEGAVEGPAQPVKYRARGHGAEWWITDPYSFGPVLGPLDDFLMGEGNHFRLYDKMGAHLIEHQGVAGVHFAVWAPNAERVAVVGDFNDWNPGRHVMRRRLDVGVWEIFIPDIGEGRAYKFAITGPHGAEQPMKADPFAFAAELRPKTASVTTAPPQHVWKDAPHREHWSKIDPRRVPISIYEVHAGSWDRDENGWYLSWDALADRLIPYVVEMGFTHIEFLPISEHPYDPSWGYQTTGLYAPSARFGDVEGFSRFVDGAHRAGVGVILDWVPAHFPTDAHGLSHFDGTALYEHEDPRQGFHPDWNTAIYNFGRREVSSFLVNNALFWPERYHIDGLRVDAVASMLYRDYSRKDGEWVPNEQGGRENWEAVEFLRQVNRQVYGQHPGVFTVAEESTAWPGVSAPAHDGGLGFGFKWNMGFMHDTLQYMAREPVHRRHHHGEILFGLHYAFDENFVLPLSHDEVVHGKGSLLTKMAGDDWQKFANLRAYYAFMWAYPGKKLLFMGQEFAQREEWSEDRPLDWHLRCSHAHEGVRSLVRDLNHLYRDTPALHARDCEREGFEWLVADDSAQSVFAWLRKAPGEKPVAVIANMTPVARAPYRLPLPHDGRWTEVLNSDATQYWGSGLGNMGGVDASDGAAWVTLPPLATVMLRFDG
>NZ_CP013916.1|WP_083706714.1|3733756_3736189_+|glycogen/starch/alpha-glucan-phosphorylase
MTTTITTLHVDDTGPLADAIVDTLVHRIGKDAANARRHDWLAATILTVRNDIIERWMASTREAHAAGAKRVYYLSLEFLIGRLLRDALSNMGVMAQVAGALQTLGVDLAGLEEIEPDAALGNGGLGRLAACFMESLASLDLPAYGYGIRYVNGMFRQRIDDGWQVELPETWLSHGNPWEFERRESAYFVGFGGEVIGTESGAVHWKPAEAVEAVAVDTPVVGWRGKRVNTLRLWTAQAIDPIRLDRFNAGDYTGALAGQLAAETLVRVLYPSDSSPAGQELRLRQEYFFSSASLQDIVRRHIQYFKDIRTLPDKAAIQLNDTHPAVSVAELMRLLVDHHDLGFEEAWEITRRTFGYTNHTLLPEALESWPLHLFERLLPRHMQLIYAINAKLLREARAVEDMDDRAIAAISLIDEGGERRVRMANLAFAGSHSVNGVAALHTELMKKTVFADLHRLYPTRINNKTNGITPRRWLQQCNPQLTALIREAIGPGFEDDAEKLIALTEFAQDANFRERFLAIKRSNKVGLGNYLRESTGLRVDPDALFDVQIKRIHEYKRQLLNIIETVALYDQIRSHPERDWTPRVKLFAGKAASSYHNAKLVIKLANDVARRINSDPSVGHLLKVGFIPNYNVSLAEKIIPAADLSEQISTAGMEASGTGNMKFALNGALTIGTLDGANVEIKEHVGDDHIVIFGLTADEVAAKRRDGYNPREVIEGSPELRQAVSAIASGVFSPDDPGRYAGLMGGLYDGDWFMVAADFDAYAAAQRSVDTRWQDQAGWATSAIHNVAKVGWFSSDRTIRQYAEEIWNVM
>NZ_CP013916.1|WP_076717622.1|3732352_3733663_+|Nramp-family-divalent-metal-transporter
MTVATPATRSLAESHRSIAIPEGASFLRRLFAFAGPGYLVAVGYMDPGNWATDIAGGSAYGYALLSVILLSNIMAMILQALSARLGIAAGLDLAQACRAAYSKPVSRILWLLCEIAIIACDLAEVLGTAIALQLLFDLPLVWGVLITGLDVFLILALQRYGFRKVEAFIIALLLIIGGCFLYELIASRPDPGAVMAGFIPTTRIVTDPAMLYIAIGILGATVMPHNLYLHSSVVQTRAFGLTTEGKRDAIKMATIDSTVALFFAFFINAAILIVAAATFHVAGRTDVAEIDQAYRLLAPMLGAGAASVVFGVALLASGQNSTVTGTLAGQIVMEGFLDLRLAPWLRRLITRGLAIVPAVLVVGASGQAGATKLLVLSQVILSLQLPFAVVPLVRFTANKGMMGPFASPVWLRILAWIIAAIIIGLNLTLLWGLATG
>NZ_CP013916.1|WP_156884397.1|3731338_3732247_+|4-hydroxybenzoate-octaprenyltransferase
MTVEIVPDSEHKGLVGRLPPRLRGLALLARFDRPIGWWLLFWPGVWAIALAGGLPDRWPLVLWFLLGSIAMRGAGCVFNDIVDRDLDAQVARTRARPIPSGLVSVKLAAVWLVALCLIGLVVLVQLRPLAAIVAVASLAPVAAYPFMKRITWWPQAWLGMVFSWAALVGWAEVAGSLSAPLWLLYAGSIAWVIGYDTIYALQDREDDALIGVRSSALRMGAHVKPGVGAFYLAAVLCWAGAIWLVRPDAIALAALMPVALHLGWQVATLKPDDGAGALHRFRSNRFAGLLMALACAVVGSSL
>NZ_CP013916.1|WP_042489487.1|3731089_3731236_-|hypothetical-protein
MIGLSVAVGRFVEALFWAILRVAGMVGGVVLLVGVVLGVMWWLIRRRR
>NZ_CP013916.1|WP_076718438.1|3730082_3731093_+|glycosyltransferase-family-2-protein
MMSRPVSIAATLIVRNEARCLARCLGSVAPFVDRMVVLDTGSTDGTVAIAKAAGAEVHHLPWPDSFSVARNHLLDLADSDWALMLDADEWLVTGGELLREWCGGPARLGRVCIHNQHDDGETATRSWITRLIPRGARYEGRVHEQVASPLPRVPLPLHVAHDGYLAAQIAPKRNRNHILLLRDLAEQPDDPYLHYQIARDARMRDDLDAACTHFAQALALTPADANWRHELVVTAITVLTKAARLDEALALADREMPHWPESPDFFFVLGDLLLDRAMADPANAIGHWLPLAEGSWQRCLAIGERPELEGSVAGRGSHLAQHNLDVIRSQLAMLAA
>NZ_CP013916.1|WP_172839698.1|3729032_3730043_+|glycosyltransferase-family-2-protein
MLPPAPRIAATLIVRNEARCLARCLESVAPFVDRIVVLDTGSTDRTVAIAKAAGAEVHHLPWPDDFAEARNHVMACADADWNLMLDADEWISAGGEQLRRWCAGPPRLGSVCIENETDGSAYPTRSWIARLLPRGTYYEGRIHEQVVSPLPITPTPIHVGHDGYLAAQKARKIDRNYQLLQRELAEQPDNPYLMFQFGMEAQARRDLPTACDYLQRALATAPRDAGWRHPLVTSAMTLMAYMGRRDEALALAYAEFPHWQHSPDYFCVLGDILFDQALADPAQAIDHWLPLAQGAWERCLAIGERPDLDGSVAGRGSYLPQQSLDIVRSQLATLAA
>NZ_CP013916.1|WP_056436502.1|3744847_3745231_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MSERPDEEMARDETAPGVESEKDSVVGGIRSYAIGLVAAAILTAASFALVQFDIVWGPAVPAALVALAIGQMGVHLVFFLHITTGPDNSNNVLALLFGILIVALVLLGSIWIMGHLNHNLMGPMATP
>NZ_CP013916.1|WP_076717632.1|3745227_3745863_-|cytochrome-(ubi)quinol-oxidase-subunit-III
MSGAARTHDPNKLGRSAEPNPDGPAPKRVVVSYGFWIFLLSDFILFACFFAGYAVLKDATAGGPSGKDLFELKLVETETVLLLLSSFACGLAGIATLARDMRWFQIAMAATGLLGAGFLALETYEFLNLIGEGAGPGRSAFLSAFFALVGCHGLHVLLGMLWLTTMMAQAWAKGFREDILRRILCFSLFWHALDIIWVALFTMVYLMGVRG
>NZ_CP013916.1|WP_076717634.1|3747866_3748754_-|ubiquinol-oxidase-subunit-II
MFRDPRLAKIPARFACLGSCVVLSACEPGILDPAGPIAAGERSIFFNSLAVMLAIVVPVIILAFAFGWWFRAGNTRAKHLPEWAYSGRLELLVWSIPALAIMFLGGIAWIGSHDLDPPKPIASKARTMTVEVVATDWKWLFLYPEQGIATINRLVVPVGTPVKFRITSAGVMNSFFVPQLGSQIYAMSGMDSTLHLRADKAGRYRGLSAHYSGEGFADMDFFVDAVPQASFDRFVATAQGGQGKTLDWSEFVAMAHPSRNVRPASYPRIQPGLYDQIVMKNGAPEGEKAKDGREQ
>NZ_CP013916.1|WP_076717636.1|3748804_3749248_-|hypothetical-protein
MTATLLLLGLTITLHVWPNLPISRWLAAMLVEAPARLLGRVRPGHWAMMALGIALLGLAIWFEIDEIRMLVAAAAPMGDLVMLASAIEWGGVAELVMAAVLSSSMLARWPVFGRWAGRMSASRTARPRRVERPANDSDDGEGRRLAA
>NZ_CP013916.1|WP_076717638.1|3749326_3750169_+|CoA-ester-lyase
MTLRSALFLPASNPRAIAKARMLDSDAVILDLEDAVAPDAKAGARDAAVAAVREEGFGERVLVVRTNGFDSPHAAEDLAALAEACPAAVLIPKVDDVATLAAARAALGQDVPLWAMIETCRGILSLGAIAQAARELGLTALIAGTNDLAKEMRLPSPPAPEALLPLRVQIVVAARSAGLIALDGVCNALDAPDRLAAECAEGRRLGFDGKTLIHPNQIAAANTGFGPDAAEIAWARRVVEAFADAEQAALGAIRLDGQMVERLHLTEAERILALVQRPAE
>NZ_CP013916.1|WP_076717640.1|3752390_3753413_-|biotin-synthase-BioB
MTTTTALRPEAALRTDWTRAEIAALFDLPFPELLFRAAEVHRAHHAADEVQLCTLLSIKTGGCPEDCGYCSQSASAESDVKAEKLMDVQAVLAAAAEAKAAGSQRFCMGAAWRSPKERDMDKVVAMVEGVKAMGLETCMTLGMLDAPQAQRLAEAGLDYYNHNIDTSPENYANVITTRCFEDRLATLSNVREAGISVCCGGIVGMGETRGDRVGFVHALATLPRHPESVPVNALVPVKGTVLGDMLADTPLARIDDIEFVRTVAVARITMPMSMVRLSAGRESMSAATQALCFMAGANSIFTGDKLLTAGNAGDDADAALFARLGLKPMEGAEPMRVAAE
>NZ_CP013916.1|WP_076718442.1|3753427_3755686_-|methylmalonyl-CoA-mutase
MAERPELSDWEALAAREVKGRDLSWQTPEGITVKPLYTAEDVKTDPGLPGFAPFTRGVRASMYAGRPWTIRQYAGFSTAEESNAFYRRNLAAGQKGLSVAFDLATHRGYDSDHPRVTGDVGKAGVAIDTVEDMKILFDGIPLDAMSVSMTMNGAVIPVLAFFIVAAEEQGVHRSKLEGTIQNDILKEFMVRNTYIYPPEPSMRIISDIFAYTSVEMPKFNSISISGYHMQEAGATQLQELAFTIADGMEYVKYGVASGLDIDKFAGRLSFFFAIGMNFFMEVAKLRAARVLWHRAMTQLGAKDERSKMLRTHCQTSGVSLTEQDPYNNVIRTTIEAMAAMLGGTQSLHTNALDEAIALPTDFSARIARNTQIVLQEETGMTKVVDPLGGSYYVESLTQSLVDGAWALIERIEAEGGMAKAVASGWPKAMIEEASAARAAKVDRGEDVIVGVNTYRLADEAPVEILDIDNHAVRAGQVARIAAVKAARDEAAAQAALDALRQAAQNPPQARLGEGDHPKDGGGAGADGAPPPRPAGAVPLPEQAQGGMGSNLLALAVEAARARATLGEISAALEDAFGRYGTQPTPVSGIYGGAYGEDERWARLLRGVEAVERRLGRKPRLFVAKMGQDGHDRGANLVSSMFGDLGFEVVAGALFQTPEEAAQVALTRDVDVVGASSLAAGHKTLIPELIGHLRDAGRADIKVIAGGVIPAQDYQALYDAGVQAIFGPGTNLVKAAEDVLRLLGHNMPPETGE
>NZ_CP013916.1|WP_076717642.1|3755758_3756529_-|enoyl-CoA-hydratase/isomerase-family-protein
MSEPVLLAERRGGVLVLTLNRPDRLNAAPPELFDRIGEALAARGDARAVLLTGAGKAFCSGADISGGDVGPETVHRALVDHFNPLFLTLADLPIPVVSAVRGAAAGIGCSLALAADFCVASETAYFLHAFVNIGMVPDGGASWLLPRLIGRARAAEMMMLGERVGAVRALDWGMIHKVAADDRLDAEAFALAERLAAGPSVALGLMRRALHAGFDSDYATALAREAEDQRSARATQDGEEGGRAFFEKRPPRFLGR
>NZ_CP013916.1|WP_076717644.1|3756525_3756945_-|methylmalonyl-CoA-epimerase
MTLGRLNHIGIATPSIEKTVETYRHILGAEAIGEPFDLPPQGVRVCFIDAPNTQIELIQPLDETSPIANFLKKNPAGGQHHLCFEVADMAAAVAELQAKGATLLGQPRIGAHGTPVVFLHPRDMGGVLVELMEAPGEGH
>NZ_CP013916.1|WP_076717646.1|3757101_3758628_-|acyl-CoA-carboxylase-subunit-beta
MASTMVELERRRAAARAGGGEKRVAAQHAKGKLTARERLDVLLDEDSFEELDMFVEHNCTDFGMTEQVIPGDGVVTGSGTINGRLVFVFSQDFTVFGGSLSERHAQKICKIMDMAMKVGAPVIGLNDSGGARIQEGVASLGGYAEVFQRNVLASGVVPQLSLIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEVVTQEALGGAVTHTTKTGVADVAFEDDIEALLAARDFIDFLPANNREGVPERPTADAWDRQEESLDTLIPASANQPYDMHELLSKVVDEGDFFEVQPAHGANIITGFGRIEGRTVGFVANQPMVLAGVLDINASRKAARFVRFCDAFEIPIVTFVDVPGFLPGTSQEHNGIIKHGAKLLFAYAEATVPKITVITRKAYGGAYDVMASKHLRGDLNYAWPTAEIAVMGAKGAVEIIFRGKTPEEIAERTAEYEARFANPFVAASKGFVDEVIQPHSTRRRIALGLRKLRNKDLANPWKKHDNLPL

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Crispr_ID: NZ_CP013916_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP013916_4

3756993-3757070

Orphan

Consensus_repeat	Method
TCCCCTCCCGCTTGCGGGAGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP013916_4

>merge|NZ_CP013916|4|3756993-3757070|CRISPRCasFinder
TCCCCTCCCGCTTGCGGGAGGGGCGTGTTTGGGGGCAGCTCTCGCCCAGAGCTTCTCCCCTCCCGCTGGCGGGAGGGG

>NZ_CP013916|4|4|3756993-3757070|CRISPRCasFinder
TCCCCTCCCGCTTGCGGGAGGGG	CGTGTTTGGGGGCAGCTCTCGCCCAGAGCTTC
TCCCCTCCCGCTGGCGGGAGGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP013916.1\|WP_076717646.1\|3757101_3758628_-\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP013916.1\|WP_076717648.1\|3758906_3759839_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|234786
NZ_CP013916.1\|WP_076717632.1\|3745227_3745863_-\|cytochrome-(ubi)quinol-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|239214
NZ_CP013916.1\|WP_076717654.1\|3765987_3767766_+\|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl\|CDD\|225922
NZ_CP013916.1\|WP_076717642.1\|3755758_3756529_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|236163
NZ_CP013916.1\|WP_076717638.1\|3749326_3750169_+\|CoA-ester-lyase	unknown	unknown	gnl\|CDD\|225184
NZ_CP013916.1\|WP_076717656.1\|3767747_3769178_+\|trehalose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|274112
NZ_CP013916.1\|WP_156361080.1\|3765241_3765988_+\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|319767
NZ_CP013916.1\|WP_172839745.1\|3762183_3762612_+\|succinate-dehydrogenase,-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|239579
NZ_CP013916.1\|WP_076717636.1\|3748804_3749248_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP013916.1\|WP_056436502.1\|3744847_3745231_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|131894
NZ_CP013916.1\|WP_056433571.1\|3762611_3762995_+\|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein	unknown	unknown	gnl\|CDD\|239575
NZ_CP013916.1\|WP_076717640.1\|3752390_3753413_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|273075
NZ_CP013916.1\|WP_076717644.1\|3756525_3756945_-\|methylmalonyl-CoA-epimerase	unknown	unknown	gnl\|CDD\|319912
NZ_CP013916.1\|WP_076717652.1\|3760612_3761995_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP013916.1\|WP_076717630.1\|3742914_3744714_+\|glycogen-debranching-protein-GlgX	unknown	unknown	gnl\|CDD\|131155
NZ_CP013916.1\|WP_076718442.1\|3753427_3755686_-\|methylmalonyl-CoA-mutase	unknown	unknown	gnl\|CDD\|236508
NZ_CP013916.1\|WP_056433568.1\|3762994_3764803_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236375
NZ_CP013916.1\|WP_076717634.1\|3747866_3748754_-\|ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|182518
NZ_CP013916.1\|WP_076717650.1\|3759828_3760536_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491

Protein	Function_ID	Function_description	E-value
NZ_CP013916.1\|WP_076717646.1\|3757101_3758628_-\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP013916.1\|WP_076717648.1\|3758906_3759839_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	9.0527e-58
NZ_CP013916.1\|WP_076717632.1\|3745227_3745863_-\|cytochrome-(ubi)quinol-oxidase-subunit-III	gnl\|CDD\|239214	cd02863, Ubiquinol_oxidase_III, Ubiquinol oxidase subunit III subfamily. Ubiquinol oxidase, the terminal oxidase in the respiratory chains of aerobic bacteria, is a multi-chain transmembrane protein located in the cell membrane. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Ubiquinol oxidases feature four subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of bovine CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in bovine CcO. Although not required for catalytic activity, subunit III appears to be involved in assembly of the multimer complex.	6.67375e-79
NZ_CP013916.1\|WP_076717654.1\|3765987_3767766_+\|glycoside-hydrolase-family-15-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	9.35572e-75
NZ_CP013916.1\|WP_076717642.1\|3755758_3756529_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|236163	PRK08140, PRK08140, enoyl-CoA hydratase; Provisional.	6.15253e-85
NZ_CP013916.1\|WP_076717638.1\|3749326_3750169_+\|CoA-ester-lyase	gnl\|CDD\|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	3.87766e-70
NZ_CP013916.1\|WP_076717656.1\|3767747_3769178_+\|trehalose-6-phosphate-synthase	gnl\|CDD\|274112	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see Wolf, et al., ). [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP013916.1\|WP_156361080.1\|3765241_3765988_+\|trehalose-phosphatase	gnl\|CDD\|319767	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2. Trehalose biosynthesis in bacteria is known through three pathways - OtsAB, TreYZ and TreS. The OtsAB pathway, also known as the trehalose 6-phosphate synthase (TSP)/ Trehalose-6-phosphate phosphatase (TPP) pathway, is the most common route known to be involved in the stress response of Escherichia coli. It involves converting glucose-6-phosphate and UDP-glucose to form trehalose-6-phosphate (T6P), catalyzed by TPS, the product of the otsA gene, this step is followed by the dephosphorylation of T6P to yield trehalose and inorganic phosphate, catalyzed by a specific TPP, the product of otsB gene. This OtsAB (or TSP/TPP) pathway, is also the most common route known to be involved in the stress response of yeast In Saccharomyces cerevisiae, the corresponding enzymes, TPS1p and TPS2p, form a multimeric synthase complex together with additional regulatory subunits encoded by Tsl1 and Tps3. Trehalose is a common disaccharide accumulated by organisms as a reservation of carbohydrate and in response to unfavorable growth conditions. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	7.14533e-55
NZ_CP013916.1\|WP_172839745.1\|3762183_3762612_+\|succinate-dehydrogenase,-cytochrome-b556-subunit	gnl\|CDD\|239579	cd03499, SQR_TypeC_SdhC, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase C (SdhC) subunit; composed of bacterial SdhC and eukaryotic large cytochrome b binding (CybL) proteins. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this family reduce high potential quinones such as ubiquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Proteins in this subfamily are classified as Type C SQRs because they contain two transmembrane subunits and one heme group. The heme and quinone binding sites reside in the transmembrane subunits. The SdhC or CybL protein is one of the two transmembrane subunits of bacterial and eukaryotic SQRs. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	6.42498e-35
NZ_CP013916.1\|WP_076717650.1\|3759828_3760536_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.2724e-53
NZ_CP013916.1\|WP_056436502.1\|3744847_3745231_-\|cytochrome-o-ubiquinol-oxidase-subunit-IV	gnl\|CDD\|131894	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV. Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain which reacts with oxygen, reducing it to water with the concomitant transport of 4 protons across the membrane. Also known as the cytochrome bo complex, cytochrome o ubiquinol oxidase contains four subunits, two heme b cofactors and a copper atom which is believed to be the oxygen active site. This complex is structurally related to the cytochrome caa3 oxidases which utilize cytochrome c as the reductant and contain heme a cofactors, as well as the intermediate form aa3 oxidases which also react directly with quinones as the reductant. [Energy metabolism, Electron transport].	3.25301e-33
NZ_CP013916.1\|WP_076717640.1\|3752390_3753413_-\|biotin-synthase-BioB	gnl\|CDD\|273075	TIGR00433, biotin_synthase, biotin synthase. Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	6.66598e-159
NZ_CP013916.1\|WP_076717644.1\|3756525_3756945_-\|methylmalonyl-CoA-epimerase	gnl\|CDD\|319912	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.	4.46257e-51
NZ_CP013916.1\|WP_076717652.1\|3760612_3761995_-\|chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.10745e-41
NZ_CP013916.1\|WP_076717630.1\|3742914_3744714_+\|glycogen-debranching-protein-GlgX	gnl\|CDD\|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP013916.1\|WP_076718442.1\|3753427_3755686_-\|methylmalonyl-CoA-mutase	gnl\|CDD\|236508	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed.	0
NZ_CP013916.1\|WP_056433568.1\|3762994_3764803_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236375	PRK09078, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP013916.1\|WP_076717634.1\|3747866_3748754_-\|ubiquinol-oxidase-subunit-II	gnl\|CDD\|182518	PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II; Provisional.	2.58754e-102
NZ_CP013916.1\|WP_056433571.1\|3762611_3762995_+\|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein	gnl\|CDD\|239575	cd03495, SQR_TypeC_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type C subfamily, Succinate dehydrogenase D (SdhD) subunit-like; composed of predominantly uncharacterized bacterial proteins with similarity to the E. coli SdhD subunit. One characterized protein is the respiratory Complex II SdhD subunit of the only eukaryotic member, Reclinomonas americana. SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. It is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. E. coli SQR is classified as Type C SQRs because it contains two transmembrane subunits and one heme group. The SdhD and SdhC subunits are membrane anchor subunits containing heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	7.20747e-26

>NZ_CP013916.1|WP_076717644.1|3756525_3756945_-|methylmalonyl-CoA-epimerase
MTLGRLNHIGIATPSIEKTVETYRHILGAEAIGEPFDLPPQGVRVCFIDAPNTQIELIQPLDETSPIANFLKKNPAGGQHHLCFEVADMAAAVAELQAKGATLLGQPRIGAHGTPVVFLHPRDMGGVLVELMEAPGEGH
>NZ_CP013916.1|WP_076717642.1|3755758_3756529_-|enoyl-CoA-hydratase/isomerase-family-protein
MSEPVLLAERRGGVLVLTLNRPDRLNAAPPELFDRIGEALAARGDARAVLLTGAGKAFCSGADISGGDVGPETVHRALVDHFNPLFLTLADLPIPVVSAVRGAAAGIGCSLALAADFCVASETAYFLHAFVNIGMVPDGGASWLLPRLIGRARAAEMMMLGERVGAVRALDWGMIHKVAADDRLDAEAFALAERLAAGPSVALGLMRRALHAGFDSDYATALAREAEDQRSARATQDGEEGGRAFFEKRPPRFLGR
>NZ_CP013916.1|WP_076718442.1|3753427_3755686_-|methylmalonyl-CoA-mutase
MAERPELSDWEALAAREVKGRDLSWQTPEGITVKPLYTAEDVKTDPGLPGFAPFTRGVRASMYAGRPWTIRQYAGFSTAEESNAFYRRNLAAGQKGLSVAFDLATHRGYDSDHPRVTGDVGKAGVAIDTVEDMKILFDGIPLDAMSVSMTMNGAVIPVLAFFIVAAEEQGVHRSKLEGTIQNDILKEFMVRNTYIYPPEPSMRIISDIFAYTSVEMPKFNSISISGYHMQEAGATQLQELAFTIADGMEYVKYGVASGLDIDKFAGRLSFFFAIGMNFFMEVAKLRAARVLWHRAMTQLGAKDERSKMLRTHCQTSGVSLTEQDPYNNVIRTTIEAMAAMLGGTQSLHTNALDEAIALPTDFSARIARNTQIVLQEETGMTKVVDPLGGSYYVESLTQSLVDGAWALIERIEAEGGMAKAVASGWPKAMIEEASAARAAKVDRGEDVIVGVNTYRLADEAPVEILDIDNHAVRAGQVARIAAVKAARDEAAAQAALDALRQAAQNPPQARLGEGDHPKDGGGAGADGAPPPRPAGAVPLPEQAQGGMGSNLLALAVEAARARATLGEISAALEDAFGRYGTQPTPVSGIYGGAYGEDERWARLLRGVEAVERRLGRKPRLFVAKMGQDGHDRGANLVSSMFGDLGFEVVAGALFQTPEEAAQVALTRDVDVVGASSLAAGHKTLIPELIGHLRDAGRADIKVIAGGVIPAQDYQALYDAGVQAIFGPGTNLVKAAEDVLRLLGHNMPPETGE
>NZ_CP013916.1|WP_076717640.1|3752390_3753413_-|biotin-synthase-BioB
MTTTTALRPEAALRTDWTRAEIAALFDLPFPELLFRAAEVHRAHHAADEVQLCTLLSIKTGGCPEDCGYCSQSASAESDVKAEKLMDVQAVLAAAAEAKAAGSQRFCMGAAWRSPKERDMDKVVAMVEGVKAMGLETCMTLGMLDAPQAQRLAEAGLDYYNHNIDTSPENYANVITTRCFEDRLATLSNVREAGISVCCGGIVGMGETRGDRVGFVHALATLPRHPESVPVNALVPVKGTVLGDMLADTPLARIDDIEFVRTVAVARITMPMSMVRLSAGRESMSAATQALCFMAGANSIFTGDKLLTAGNAGDDADAALFARLGLKPMEGAEPMRVAAE
>NZ_CP013916.1|WP_076717638.1|3749326_3750169_+|CoA-ester-lyase
MTLRSALFLPASNPRAIAKARMLDSDAVILDLEDAVAPDAKAGARDAAVAAVREEGFGERVLVVRTNGFDSPHAAEDLAALAEACPAAVLIPKVDDVATLAAARAALGQDVPLWAMIETCRGILSLGAIAQAARELGLTALIAGTNDLAKEMRLPSPPAPEALLPLRVQIVVAARSAGLIALDGVCNALDAPDRLAAECAEGRRLGFDGKTLIHPNQIAAANTGFGPDAAEIAWARRVVEAFADAEQAALGAIRLDGQMVERLHLTEAERILALVQRPAE
>NZ_CP013916.1|WP_076717636.1|3748804_3749248_-|hypothetical-protein
MTATLLLLGLTITLHVWPNLPISRWLAAMLVEAPARLLGRVRPGHWAMMALGIALLGLAIWFEIDEIRMLVAAAAPMGDLVMLASAIEWGGVAELVMAAVLSSSMLARWPVFGRWAGRMSASRTARPRRVERPANDSDDGEGRRLAA
>NZ_CP013916.1|WP_076717634.1|3747866_3748754_-|ubiquinol-oxidase-subunit-II
MFRDPRLAKIPARFACLGSCVVLSACEPGILDPAGPIAAGERSIFFNSLAVMLAIVVPVIILAFAFGWWFRAGNTRAKHLPEWAYSGRLELLVWSIPALAIMFLGGIAWIGSHDLDPPKPIASKARTMTVEVVATDWKWLFLYPEQGIATINRLVVPVGTPVKFRITSAGVMNSFFVPQLGSQIYAMSGMDSTLHLRADKAGRYRGLSAHYSGEGFADMDFFVDAVPQASFDRFVATAQGGQGKTLDWSEFVAMAHPSRNVRPASYPRIQPGLYDQIVMKNGAPEGEKAKDGREQ
>NZ_CP013916.1|WP_076717632.1|3745227_3745863_-|cytochrome-(ubi)quinol-oxidase-subunit-III
MSGAARTHDPNKLGRSAEPNPDGPAPKRVVVSYGFWIFLLSDFILFACFFAGYAVLKDATAGGPSGKDLFELKLVETETVLLLLSSFACGLAGIATLARDMRWFQIAMAATGLLGAGFLALETYEFLNLIGEGAGPGRSAFLSAFFALVGCHGLHVLLGMLWLTTMMAQAWAKGFREDILRRILCFSLFWHALDIIWVALFTMVYLMGVRG
>NZ_CP013916.1|WP_056436502.1|3744847_3745231_-|cytochrome-o-ubiquinol-oxidase-subunit-IV
MSERPDEEMARDETAPGVESEKDSVVGGIRSYAIGLVAAAILTAASFALVQFDIVWGPAVPAALVALAIGQMGVHLVFFLHITTGPDNSNNVLALLFGILIVALVLLGSIWIMGHLNHNLMGPMATP
>NZ_CP013916.1|WP_076717630.1|3742914_3744714_+|glycogen-debranching-protein-GlgX
MTNQLALPLGATPVPGGTRFAVRSTAERVELCLFDGADERRLAMTRDGDVWTTTAPGTNHLYGYRAHGEYDPGRNLWFDPAKLLVDPYALELDRPFIQSPRLAAYGEDTADIVPRARVVTPLTDTPARPLFRPGGLIYELNVRGFTMRHPAIPPEQRGTLAALAHPAVLDHLRKLGVAAVELMPITAAIDERHLPPLGLRNAWGYNPVVPMALCPERVPGGVAELVSTAAVLRQAGIGVILDLVFNHMGESDIHGGTLSFRGLDPDAYARTTDGTLINDAGTGNTLDASRPGVRAMILDSLRHFARAGVDGFRFDLAPVLARGSGFDARAPIFTEIAADPILSTRIMIAEPWDIGPGGYQLGNFPDHWLEWNDKYRDQVRRFWRGDGRAGDLATRIAGSADVFASAASRSVNFVAAHDGFTLADLAAYAQRHNHANGEDNRDGHGDEVSWNHGQEGATDDPAIRGARTRSVRAMLATLFLSRGTPMLTAGDEFGRSQNGNNNGYAQDNEATWLDWEDRDEALEDFVAQLSAFRRDMPLDWTDWLAGGEWRNLSGGPMMPEDWDKGEGFALHLPIGDEKLILRFDHRHGVSAIRGRVLES
>NZ_CP013916.1|WP_076717646.1|3757101_3758628_-|acyl-CoA-carboxylase-subunit-beta
MASTMVELERRRAAARAGGGEKRVAAQHAKGKLTARERLDVLLDEDSFEELDMFVEHNCTDFGMTEQVIPGDGVVTGSGTINGRLVFVFSQDFTVFGGSLSERHAQKICKIMDMAMKVGAPVIGLNDSGGARIQEGVASLGGYAEVFQRNVLASGVVPQLSLIMGPCAGGAVYSPAMTDFIFMVKDSSYMFVTGPDVVKTVTNEVVTQEALGGAVTHTTKTGVADVAFEDDIEALLAARDFIDFLPANNREGVPERPTADAWDRQEESLDTLIPASANQPYDMHELLSKVVDEGDFFEVQPAHGANIITGFGRIEGRTVGFVANQPMVLAGVLDINASRKAARFVRFCDAFEIPIVTFVDVPGFLPGTSQEHNGIIKHGAKLLFAYAEATVPKITVITRKAYGGAYDVMASKHLRGDLNYAWPTAEIAVMGAKGAVEIIFRGKTPEEIAERTAEYEARFANPFVAASKGFVDEVIQPHSTRRRIALGLRKLRNKDLANPWKKHDNLPL
>NZ_CP013916.1|WP_076717648.1|3758906_3759839_-|50S-ribosomal-protein-L11-methyltransferase
MSADSWKLTLPCTRDEAEAIDAADDLAIEAVIMTTEEIEDDREHWRLDAYFEAEPDATTIEAIRALVPSAGDHPAMVEHVPAQDWVTISQAGLEPLSVGRFFVHTGDEAVPEGLRGFHIPAGRAFGTGHHETTSGCLAMLDAMASGTVTNAIDVGTGTGLLAFAARHLWPEAKVVATDIDPIAIDVTAENAAINGVDGVELIVADGALADPIMAAAPYDLVIANILAGPLISMAPELAAIAGPEATLVLAGLLETQRADVVAAYEACGCTLETVDRRGDWSVLRLRAGRERFVPNAPFDPKGRDGWALDI
>NZ_CP013916.1|WP_076717650.1|3759828_3760536_-|SDR-family-oxidoreductase
MTTILVTGSSRGIGAAIASSLGDLPDTRVLGHATRSGPGANLAADLSDPDAPARLWAEALDQAGGAIDVLVNNAGIFEASPLDADDWSDSWARTMQINLTASTELCRLAVLHWQERGVGGRIVNIASRAAYRGDSPAHWHYAASKGGMVAMTKTIARGYAAQGILAFAVCPGFTMTGMADDYLASRGGDTLLADIPLGRVASPEEVAATVRFLCTDAPPSMTGAVLDVNGASYVR
>NZ_CP013916.1|WP_076717652.1|3760612_3761995_-|chemotaxis-protein
MPERENIVAETDLPPPTEITAGIDLDARVRAFDGGDGALTRLAADLWPAIESRADEVIEAYWNHWRRANPGAPDWTKMDRERQLTAGRAYLRNRFCHLSGRDWVESLGRSVASAYAAGVPPMDVLAMSCASDRAALKVLQESVPPDDPRRGVMIDTLLRLFGMETELTVELFAGFREWSAERERERLAGDFRNGISLVVENASVEGRDLRRQAQEASLSTRGMLGKSSEVAAAAEQSAVAMREAAQTAAGLIRAIEDARTEVDQAADVANRAADQAGQAVGMSEMLSDHAKSIESILGLIRDIAGQTNLLALNATIEAARAGDAGRGFAVVAQEVKSLASQTARATDDIATKIAAIQAATRSTVETNASIKATVHEVQVSAERIRHAMEAQAQTVTAITAAVDETALAADSMSHTIAAIRQDTEHVAQEIDRVGRGFDHLDTQLGDLKTSASQFVARVAA
>NZ_CP013916.1|WP_172839745.1|3762183_3762612_+|succinate-dehydrogenase,-cytochrome-b556-subunit
MFEDLPLAARNTARPLSPHLQIWKWGPNMLVSILHRATGTGMATVGAALLVWFLAAVAAGPESYATFRDVFTVQSGGLNIIGYVVGIGLTACLFQHMANGIRHLFMDVGAGFELKSNKLQAQATMIFAVLMTVAFWLYLGIK
>NZ_CP013916.1|WP_056433571.1|3762611_3762995_+|succinate-dehydrogenase,-hydrophobic-membrane-anchor-protein
MRSGTAIGRVRGLGSAKSGTHHWLNQRLTAGSNFLLVVWLLISILRQPSFDYAAMHLWLTNPWAAIPMAMLVASIFYHMRLGLQVVIEDYEQDQNRVALLVVMNLFVFTIAAIAIFSILKIAFGAAA
>NZ_CP013916.1|WP_056433568.1|3762994_3764803_+|succinate-dehydrogenase-flavoprotein-subunit
MSAAAYKIIDHTYDAVVVGAGGSGLRATMGIAEAGLKTACITKVFPTRSHTVAAQGGIAASLGNMGPDHWTWHMYDTVKGSDWLGDQDAIEYLCREAPAAVYELEHAGVPFSRTEEGKIYQRPFGGMMQNMGEGPPAQRTCAAADRTGHAMLHALYQQSLKYDADFFIEYFALDLIMDDQGNCRGVIALCMEDGSIHRFRAHNVVLATGGYGRCYFSATSAHTCTGDGGGMVLRAGLPLQDMEFVQFHPTGIYGAGVLITEGARGEGGYLTNSEGERFMERYAPSAKDLASRDVVSRSMAMEIREGRGVGKEGDHIYLHLDHIDPKVLAERLPGITETGKIFAGVDLTRQPLPVTPTVHYNMGGIPTNYHGEVVRLKDGNPDSVVPGLFAVGEAACVSVHGANRLGSNSLIDLVVFGRATGLRIKDTLKPGTPHAPLPAGSEELALGRLDHFRNAAGSSTTASVRSEMQKTMQRHCAVFRTDELLTEGRQMIRATYDRMKDIGIKDRSLIWNTDLVETLELDNLISQAVVTMESALNRKESRGAHVNEDFPDRDDANWMKHTVATFDGWGGQGGGVEIDYRPVHDYTLTDDIEYIKPKKRVY
>NZ_CP013916.1|WP_156361080.1|3765241_3765988_+|trehalose-phosphatase
MLADLAPPPPRLSATDSLFLDFDGTLVDLADNPEGVHVSTELADRLDALAAHMPGRLAIVSGRSIAQLDALFGPQAEHFTLAGSHGAERRSPEDGHVQPDKPDHLATATDEMRAVAEANDLYFETKSFGAGLHYRRHPQAEPLAIREATAIAERHGLTLQPGKMMVEIRLPGDKGRAIETLMQAPAMQGTVPIFFGDDVTDEDGFVAAAALGGAGVLVGPMRETAARYRLPDVAAVHIWLAQALENAK
>NZ_CP013916.1|WP_076717654.1|3765987_3767766_+|glycoside-hydrolase-family-15-protein
MQQDMNLWPIGNCQVSALVDSAGRFVWGCVPRVDGDPAFCALLGDGEPETGYWSIELEDRVSTTQGYLRNTPILVTTHMDDRGNGIEITDFCPRFSREGRVYRPTSYVRIVRPIGSPRIRIALRVATDWGTPTERTQGSNHIRYLMTQQTLRLTTDAPVGHIAAEQWFRLERPIHMFLGPDESFAGVLSEASRAMLERTTHEWHHWVRGLATPVEWQAVVIRAAITLKLCQHEETGAIVAALTTSLPEHADSGRNWDYRYCWIRDAYYTVQALNRLGALDVLEGYLEYLRNIVDAARGGHIQPLYGVGGEATLVERIETKLPGYRAMGPVRVGNQAYEQIQHDAYGQIVLSDVQAFFDTRLFRMSGVEDFHSLERVGERAWAKYDQPDAGLWELRTKSHVHTYSAAMCWAACDRLANAAQALGLEERRAFWQERADLMRETIEQSAWREETQRMSATFGGDDLDASIIQLLDLRFLSPDDPRFRSTLEAVEKGLRRGSHMLRYATEDDFGLPHTAFNVCTFWLIEALYVTGRHEDARALFEEMVARCTPAGLLSEDIDPNTGELWGNYPQTYSLVGLINCAVLLSKPWSAVR
>NZ_CP013916.1|WP_076717656.1|3767747_3769178_+|trehalose-6-phosphate-synthase
MECRAMSRLIVISNRVQPPTTGPGGNQGGLAVALLAALREQGGIWFGWSGETTDQFSGHINFQQGGGVTTATIDLEEQDIEEYYNGYANRTLWPLFHYRIDLTEFERDFDSGYARVNDRFAETVQPLIEPDDLVWVHDYHLIPLGRDLRKRGFKNRMGFFLHIPWPPVRLLMSLPSHRKLVESLFAYDVVGFHTEDWLDSFRDYVTKELGGTLGENGEVTWNGRTICAIRAPIGIETKEFEEAANGHDARFARERMYMSATGRSLIVGVDRLDYSKGLAERFLGYERFLAQNPERRALVYMLQIAPPSREKVNTYQEIRANLDALSGRINGEYADIDWVPIRYVNKGFPRPVLAGIYRAARIGLVTPLRDGMNLVAKEYVAAQDPEDPGVLILSRFAGAAEQLKDAVLINPYSAEEMSDAIVQALAMPRAERIRRWESLIENVRREDVFWWCELFLAALRGDGVKAEAKAIEAAAS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP013916_4	4.1\|3757016\|32\|NZ_CP013916\|CRISPRCasFinder	3757016-3757047	32	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	148982-149013	8	0.75
NZ_CP013916_4	4.1\|3757016\|32\|NZ_CP013916\|CRISPRCasFinder	3757016-3757047	32	MN694345	Marine virus AFVG_250M178, complete genome	9533-9564	8	0.75

1. spacer 4.1|3757016|32|NZ_CP013916|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 8, identity: 0.75

--cgtgtttgggggcagctctcgcccagagcttc	CRISPR spacer
gcgatgact--gggcagcgctcgcgcagagcttc	Protospacer
   .** .*  ******* ***** *********

2. spacer 4.1|3757016|32|NZ_CP013916|CRISPRCasFinder matches to MN694345 (Marine virus AFVG_250M178, complete genome) position: , mismatch: 8, identity: 0.75

cgtgtttgggggcagctctcgcccagagcttc	CRISPR spacer
cctgtttgtgggcagctctcgaccaaggcaag	Protospacer
* ****** ************ ***..**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

24578 : 109667

uncultured_Caudovirales_phage(14.29%)

portal,terminase,protease,integrase,tail,transposase,head,capsid

attL 36642:36659|attR 111554:111569

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076713804.1\|24578_25742_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_076713806.1\|25754_26522_-	hypothetical protein	NA	NA	NA	NA
WP_007407063.1\|26767_27199_+	50S ribosomal protein L11	NA	NA	NA	NA
WP_056433483.1\|27203_27896_+	50S ribosomal protein L1	NA	NA	NA	NA
WP_076713808.1\|28261_29161_-	sugar kinase	NA	NA	NA	NA
WP_172839590.1\|29312_30503_+	mannonate dehydratase	NA	NA	NA	NA
WP_076713810.1\|30499_31912_+	glucuronate isomerase	NA	NA	NA	NA
WP_156884332.1\|31953_33285_+	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	1.9e-44	33.8
WP_076717677.1\|33423_33747_-	hypothetical protein	NA	NA	NA	NA
WP_172839591.1\|33783_35331_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_076713815.1\|35783_38693_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	2.2e-42	24.8
36642:36659	attL	NA	NA	NA	NA
WP_076713817.1\|38776_39982_-	carbohydrate porin	NA	NA	NA	NA
36642:36659	attL	NA	NA	NA	NA
WP_076713820.1\|40235_42002_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.8e-09	29.4
WP_156884132.1\|42188_42945_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_083706493.1\|43345_43498_+	DUF4142 domain-containing protein	NA	NA	NA	NA
WP_076713824.1\|49882_50875_-	FAH family protein	NA	NA	NA	NA
WP_076713826.1\|50945_52469_-	aldehyde dehydrogenase (NADP(+))	NA	NA	NA	NA
WP_056431939.1\|52618_53350_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_076717679.1\|53649_54513_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_172839592.1\|54541_55330_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_076713828.1\|55341_56487_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_056431841.1\|56670_57045_+	hypothetical protein	NA	NA	NA	NA
WP_076713829.1\|57113_58910_-	dihydroxy-acid dehydratase family protein	NA	NA	NA	NA
WP_172839593.1\|58923_60018_-	galactose mutarotase	NA	NA	NA	NA
WP_056431830.1\|60201_61512_+	sugar MFS transporter	NA	NA	NA	NA
WP_172839594.1\|61651_62263_+	DUF1826 domain-containing protein	NA	NA	NA	NA
WP_083706716.1\|62328_63441_+	DUF1624 domain-containing protein	NA	NA	NA	NA
WP_076713831.1\|63474_64596_-	copper resistance protein B	NA	NA	NA	NA
WP_083706495.1\|64592_66428_-	copper resistance system multicopper oxidase	NA	NA	NA	NA
WP_076713833.1\|66472_67036_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_083706717.1\|67044_67476_-	periplasmic heavy metal sensor	NA	NA	NA	NA
WP_083706496.1\|67484_67772_-	hypothetical protein	NA	NA	NA	NA
WP_076713837.1\|67827_68256_+	hypothetical protein	NA	NA	NA	NA
WP_156884133.1\|68503_69409_+	hypothetical protein	NA	NA	NA	NA
WP_076717688.1\|69629_70865_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q8W6M6	Sinorhizobium_phage	1.5e-67	39.7
WP_076713841.1\|71102_72713_-	hypothetical protein	NA	NA	NA	NA
WP_076713843.1\|72712_72976_-	hypothetical protein	NA	NA	NA	NA
WP_076713845.1\|72987_73764_-	DNA adenine methylase	A0A219VHB5	Ochrobactrum_phage	7.2e-73	52.4
WP_083706497.1\|73919_74849_-	DNA cytosine methyltransferase	A0A0F7L3T9	uncultured_marine_virus	3.0e-33	35.0
WP_156884134.1\|75225_75753_-	hypothetical protein	NA	NA	NA	NA
WP_083706498.1\|75769_76279_-	N-acetylmuramoyl-L-alanine amidase	F6MIJ9	Haemophilus_phage	1.3e-33	47.5
WP_076713850.1\|76309_76657_-	hypothetical protein	NA	NA	NA	NA
WP_076713852.1\|76683_77190_-	right-handed parallel beta-helix repeat-containing protein	NA	NA	NA	NA
WP_076713854.1\|77144_79295_-	hypothetical protein	NA	NA	NA	NA
WP_076713856.1\|79291_80104_-	hypothetical protein	NA	NA	NA	NA
WP_076713858.1\|80129_83138_-	DUF1983 domain-containing protein	NA	NA	NA	NA
82314:82331	attR	NA	NA	NA	NA
WP_076713860.1\|83141_83564_-	hypothetical protein	A0A2P1CKK9	Pantoea_phage	6.2e-18	37.0
82314:82331	attR	NA	NA	NA	NA
WP_076713862.1\|83590_84181_-	hypothetical protein	NA	NA	NA	NA
WP_076713864.1\|84180_84774_-	hypothetical protein	NA	NA	NA	NA
WP_076713866.1\|84773_88481_-	hypothetical protein	NA	NA	NA	NA
WP_083706499.1\|88492_88612_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_076713868.1\|88611_89037_-	hypothetical protein	NA	NA	NA	NA
WP_076713869.1\|89033_89354_-	hypothetical protein	NA	NA	NA	NA
WP_156884136.1\|89357_89783_-	hypothetical protein	NA	NA	NA	NA
WP_076713872.1\|89855_90245_-	hypothetical protein	NA	NA	NA	NA
WP_076713874.1\|90237_90777_-	hypothetical protein	NA	NA	NA	NA
WP_076713875.1\|90776_91124_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_076713877.1\|91120_91441_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_076713878.1\|91440_91737_-	hypothetical protein	NA	NA	NA	NA
WP_076713880.1\|91811_93071_-\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	2.4e-65	37.3
WP_076713882.1\|93158_93908_-\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	2.9e-42	48.8
WP_076713884.1\|93873_95214_-\|portal	phage portal protein	Q6JIM9	Burkholderia_virus	7.6e-46	31.4
WP_076713886.1\|95210_97067_-\|terminase	terminase	B0VK29	Azospirillum_phage	8.2e-139	43.8
WP_083706500.1\|97050_97521_-\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_076717694.1\|97608_97893_-	HNH endonuclease	NA	NA	NA	NA
WP_076713888.1\|97990_98227_-	hypothetical protein	NA	NA	NA	NA
WP_076713889.1\|98237_98816_-	host-nuclease inhibitor Gam family protein	NA	NA	NA	NA
WP_156884137.1\|98815_99031_-	hypothetical protein	NA	NA	NA	NA
WP_076713893.1\|99033_99330_-	hypothetical protein	NA	NA	NA	NA
WP_156884138.1\|99462_100206_-	hypothetical protein	NA	NA	NA	NA
WP_076713895.1\|100224_100569_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_076713897.1\|100705_100909_+	hypothetical protein	NA	NA	NA	NA
WP_076713899.1\|100952_101339_-	type II toxin-antitoxin system HicB family antitoxin	A0A2H4J4X8	uncultured_Caudovirales_phage	6.7e-11	36.4
WP_076713901.1\|101399_101588_-	type II toxin-antitoxin system HicA family toxin	D6R431	Bacillus_phage	1.7e-15	60.0
WP_076713903.1\|101810_102158_-	hypothetical protein	NA	NA	NA	NA
WP_076713904.1\|102171_102621_-	hypothetical protein	NA	NA	NA	NA
WP_076713906.1\|102668_103019_-	hypothetical protein	NA	NA	NA	NA
WP_076713908.1\|103048_103525_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_076713909.1\|103607_104099_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_083706502.1\|104184_104463_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_172839595.1\|104656_105169_+	hypothetical protein	NA	NA	NA	NA
WP_076713915.1\|105292_105538_+	hypothetical protein	NA	NA	NA	NA
WP_076713917.1\|105534_105900_+	hypothetical protein	NA	NA	NA	NA
WP_076713919.1\|105896_106109_+	hypothetical protein	NA	NA	NA	NA
WP_076713921.1\|106105_106309_+	hypothetical protein	NA	NA	NA	NA
WP_076713923.1\|106305_106647_+	hypothetical protein	NA	NA	NA	NA
WP_156884139.1\|106639_106957_+	hypothetical protein	NA	NA	NA	NA
WP_156884140.1\|107019_107709_+	hypothetical protein	NA	NA	NA	NA
WP_076713929.1\|107705_107936_+	hypothetical protein	NA	NA	NA	NA
WP_076713932.1\|108335_109667_+\|integrase	site-specific integrase	NA	NA	NA	NA
111554:111569	attR	NA	NA	NA	NA

DBSCAN-SWA_2

896276 : 909278

Gordonia_phage(11.11%)

portal,protease,tail,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076714781.1\|896276_897587_+	DNA-packaging protein	A0A0K0N6T3	Gordonia_phage	9.7e-70	39.6
WP_076714783.1\|897738_898842_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	2.1e-49	38.5
WP_056431169.1\|898838_899144_+	hypothetical protein	NA	NA	NA	NA
WP_076714785.1\|899140_899521_+\|head,protease	HK97 family phage prohead protease	A0A0U2BX10	Paracoccus_phage	2.1e-09	33.6
WP_076714787.1\|899522_900521_+\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	1.8e-79	49.8
WP_076717865.1\|900740_901214_+	hypothetical protein	NA	NA	NA	NA
WP_076714789.1\|901210_901600_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_076714791.1\|901611_902019_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_076714793.1\|902015_902324_+	gene transfer agent family protein	NA	NA	NA	NA
WP_076714795.1\|902320_902518_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_076714797.1\|902510_903047_+\|tail	tail tape measure protein	D6PEW0	uncultured_phage	6.6e-09	33.8
WP_076714798.1\|903207_905481_+	DUF2460 domain-containing protein	A0A140G5Z8	Enterobacteria_phage	1.7e-53	29.5
WP_076714800.1\|905477_906284_+	DUF2163 domain-containing protein	Q5DN21	Alphaproteobacteria_virus	3.1e-10	39.3
WP_076714802.1\|906280_906649_+	hypothetical protein	NA	NA	NA	NA
WP_076714804.1\|906648_908772_+	hypothetical protein	A0A1W6DWX7	Sphingobium_phage	2.0e-24	37.4
WP_076714806.1\|908771_909278_+	DUF2793 domain-containing protein	A0A0K1LM54	Rhodobacter_phage	3.3e-18	44.8

DBSCAN-SWA_3

1325603 : 1337122

Caulobacter_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076715240.1\|1325603_1327058_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.4e-29	31.0
WP_007404630.1\|1327446_1327653_+	30S ribosomal protein S21	M1HLV7	Pelagibacter_phage	1.3e-05	49.2
WP_056429956.1\|1327797_1328373_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_042490327.1\|1329115_1329355_-	hypothetical protein	NA	NA	NA	NA
WP_076715241.1\|1329549_1330308_-	serine/threonine protein phosphatase	A0A1V0EF12	Caulobacter_phage	7.9e-32	41.7
WP_076715243.1\|1330380_1331643_-	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HFY9	Paramecium_bursaria_Chlorella_virus	2.8e-21	28.5
WP_076715244.1\|1331626_1332757_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	3.2e-13	24.5
WP_058745066.1\|1332870_1333731_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	4.3e-66	47.7
WP_076715246.1\|1333931_1334288_-	hypothetical protein	NA	NA	NA	NA
WP_076715247.1\|1334284_1335052_-	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_156884182.1\|1335048_1335486_-	hypothetical protein	NA	NA	NA	NA
WP_056429933.1\|1335488_1335938_-	dUTP diphosphatase	K4JSC8	Caulobacter_phage	6.3e-37	56.5
WP_076715250.1\|1335934_1337122_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.8e-38	33.8

DBSCAN-SWA_4

1344391 : 1380715

Enterobacteria_phage(30.0%)

portal,terminase,protease,tail,head,tRNA,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_076715261.1\|1344391_1345399_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_076715263.1\|1345407_1346985_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_042490310.1\|1346998_1347505_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_156361003.1\|1347966_1348617_+	Tim44/TimA family putative adaptor protein	NA	NA	NA	NA
WP_156884183.1\|1348634_1350002_+	MltA domain-containing protein	NA	NA	NA	NA
WP_076717966.1\|1350531_1351647_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_156884184.1\|1351758_1351929_+	hypothetical protein	NA	NA	NA	NA
WP_076715265.1\|1352145_1352634_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_076715266.1\|1352716_1353379_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_076715268.1\|1356862_1357537_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_076715269.1\|1357533_1359231_-	membrane protein insertase YidC	NA	NA	NA	NA
WP_058743809.1\|1359249_1359462_-	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_172839719.1\|1359464_1359902_-	ribonuclease P protein component	NA	NA	NA	NA
WP_042490346.1\|1359910_1360045_-	50S ribosomal protein L34	NA	NA	NA	NA
WP_076715271.1\|1361506_1363240_+	recombinase family protein	NA	NA	NA	NA
WP_076715272.1\|1363412_1363907_-	hypothetical protein	NA	NA	NA	NA
WP_076715274.1\|1363971_1364412_-	hypothetical protein	NA	NA	NA	NA
WP_156884185.1\|1364626_1364869_+	hypothetical protein	NA	NA	NA	NA
WP_156884186.1\|1365210_1365441_-	hypothetical protein	NA	NA	NA	NA
WP_083706567.1\|1365600_1365768_+	AlpA family phage regulatory protein	Q7M299	Enterobacteria_phage	8.9e-05	42.6
WP_076715280.1\|1365784_1366528_+	hypothetical protein	NA	NA	NA	NA
WP_076715282.1\|1366524_1367082_+	hypothetical protein	NA	NA	NA	NA
WP_076715283.1\|1368442_1369036_-	glycoside hydrolase	A0A2H4JDB4	uncultured_Caudovirales_phage	2.6e-54	56.3
WP_076715285.1\|1369262_1369574_+	hypothetical protein	NA	NA	NA	NA
WP_076715286.1\|1369570_1369765_+	hypothetical protein	NA	NA	NA	NA
WP_076715288.1\|1369761_1370007_+	hypothetical protein	NA	NA	NA	NA
WP_156884187.1\|1370013_1370199_+	hypothetical protein	NA	NA	NA	NA
WP_076715289.1\|1370452_1371247_+	hypothetical protein	A0A223W011	Agrobacterium_phage	2.1e-43	37.6
WP_076715291.1\|1371270_1371567_-	hypothetical protein	NA	NA	NA	NA
WP_076715292.1\|1371563_1371827_-	hypothetical protein	NA	NA	NA	NA
WP_076715294.1\|1371897_1372125_+	hypothetical protein	NA	NA	NA	NA
WP_156884189.1\|1372145_1372397_+	hypothetical protein	NA	NA	NA	NA
WP_076715297.1\|1372393_1372855_+	HNH endonuclease	Q2NPG0	Xanthomonas_virus	1.7e-24	41.8
WP_156884190.1\|1372793_1373171_+	HNH endonuclease	A8B112	Xanthomonas_virus	2.6e-15	56.3
WP_172839629.1\|1374175_1374625_+\|terminase	phage terminase small subunit P27 family	Q8W632	Enterobacteria_phage	9.2e-12	38.8
WP_083706568.1\|1374627_1376199_+	hypothetical protein	K7P7K8	Enterobacteria_phage	1.3e-89	41.2
WP_076715301.1\|1376235_1377537_+\|portal	phage portal protein	A0A0F7L418	uncultured_marine_virus	2.6e-67	40.1
WP_172839630.1\|1377523_1378153_+\|head,protease	HK97 family phage prohead protease	A0A2H4J6Z9	uncultured_Caudovirales_phage	1.3e-19	38.2
WP_076715304.1\|1378203_1379376_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	1.7e-49	33.8
WP_156884192.1\|1379375_1379552_+	hypothetical protein	NA	NA	NA	NA
WP_076715306.1\|1379600_1380146_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_076715308.1\|1380158_1380365_+	hypothetical protein	NA	NA	NA	NA
WP_076715309.1\|1380367_1380715_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP013916

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection